| Column number: Node in JAR3D model: Insertion positions indicated by I: Position in motif group: | 1 1 I | 2 2 1 | 3 2 I | 4 3 2 | 5 3 I | 6 4 | 7 3 I | 8 3 3 | 9 2 I | 10 2 4 | 11 1 I | In acceptance region | Cutoff score | Full edit distance | Interior edit distance | Alignment score deficit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IL_82107.4_Instance_1 IL_82107.4,IL_5WTK_001,A3_U23 | A | C | G | AC | U | |||||||||||
| IL_82107.4_Sequence_1 IL_82107.45WTK_A3_U23 | A | C | * | G | AC | U | true | 81 | 0 | 0 | 1.76 | |||||
| IL_82107.4_Instance_2 IL_82107.4,IL_7OS0_002,A11_U32 | A | C | G | AC | U | |||||||||||
| IL_82107.4_Sequence_2 IL_82107.47OS0_A11_U32 | A | C | * | G | AC | U | true | 81 | 0 | 0 | 1.76 | |||||
| IL_82107.4_Instance_3 IL_82107.4,IL_3MXH_004,G56_C84 | G | G | U | AG | C | |||||||||||
| IL_82107.4_Sequence_3 IL_82107.43MXH_G56_C84 | G | G | * | U | AG | C | true | 87 | 0 | 0 | 1.23 | |||||
| IL_82107.4_Instance_4 IL_82107.4,IL_3IWN_004,G46_C79 | G | G | U | AG | C | |||||||||||
| IL_82107.4_Sequence_4 IL_82107.43IWN_G46_C79 | G | G | * | U | AG | C | true | 87 | 0 | 0 | 1.23 | |||||
| IL_82107.4_Instance_5 IL_82107.4,IL_4V9F_067,U1897_A1942 | U | G | U | CA | A | |||||||||||
| IL_82107.4_Sequence_5 IL_82107.44V9F_U_1897_A_1942 | U | G | * | U | CA | A | true | 85 | 0 | 0 | 1.47 | |||||
| IL_82107.4_Instance_6 IL_82107.4,IL_5XWP_001,A5_U25 | A | C | G | AC | U | |||||||||||
| IL_82107.4_Sequence_6 IL_82107.45XWP_A5_U25 | A | C | * | G | AC | U | true | 81 | 0 | 0 | 1.76 | |||||
| IL_82107.4_Instance_7 IL_82107.4,IL_8SP9_001,C106_G79 | C | G | C | UA | G | |||||||||||
| IL_82107.4_Sequence_7 IL_82107.48SP9_C106_G79 | C | G | * | C | UA | G | true | 85 | 0 | 0 | 1.40 | |||||
| IL_82107.4_Instance_8 IL_82107.4,IL_5J7L_315,U1841_A1901 | U | G | U | AA | A | |||||||||||
| IL_82107.4_Sequence_8 IL_82107.45J7L_U_1841_A_1901 | U | G | * | U | AA | A | true | 100 | 0 | 0 | 0.00 | |||||
| IL_82107.4_Instance_9 IL_82107.4,IL_8CRE_090,U2178_A2222 | U | G | U | AA | A | |||||||||||
| IL_82107.4_Sequence_9 IL_82107.48CRE_U_2178_A_2222 | U | G | * | U | AA | A | true | 100 | 0 | 0 | 0.00 | |||||
| IL_82107.4_Instance_10 IL_82107.4,IL_1FUF_002,G23_C8 | G | G | U | UU | C | |||||||||||
| IL_82107.4_Sequence_10 IL_82107.41FUF_G23_C8 | G | G | * | U | UU | C | true | 78 | 0 | 0 | 2.08 | |||||
| IL_82107.4_Instance_11 IL_82107.4,IL_8P9A_313,U2200_A2244 | U | G | U | AA | A | |||||||||||
| IL_82107.4_Sequence_11 IL_82107.48P9A_U_2200_A_2244 | U | G | * | U | AA | A | true | 100 | 0 | 0 | 0.00 | |||||
| IL_82107.4_Instance_12 IL_82107.4,IL_1FUF_003,G9_C22 | G | G | U | UU | C | |||||||||||
| IL_82107.4_Sequence_12 IL_82107.41FUF_G9_C22 | G | G | * | U | UU | C | true | 78 | 0 | 0 | 2.08 | |||||
| IL_82107.4_Instance_13 IL_82107.4,IL_5W1H_001,A-23_U-4 | A | G | C | AA | U | |||||||||||
| IL_82107.4_Sequence_13 IL_82107.45W1H_A-23_U-4 | A | G | * | C | AA | U | true | 99 | 0 | 0 | 0.13 | |||||
| IL_82107.4_Instance_14 IL_82107.4,IL_5WLH_001,A-23_U-4 | A | G | C | AA | U | |||||||||||
| IL_82107.4_Sequence_14 IL_82107.45WLH_A-23_U-4 | A | G | * | C | AA | U | true | 99 | 0 | 0 | 0.13 | |||||
| IL_82107.4_Instance_15 IL_82107.4,IL_8CRE_398,A298_U116 | A | A | U | CG | U | |||||||||||
| IL_82107.4_Sequence_15 IL_82107.48CRE_A298_U116 | A | A | * | U | CG | U | true | 69 | 0 | 0 | 2.94 | |||||
| IL_82107.4_Instance_16 IL_82107.4,IL_6IV9_001,A-29_U-6 | A | C | G | UC | U | |||||||||||
| IL_82107.4_Sequence_16 IL_82107.46IV9_A-29_U-6 | A | C | * | G | UC | U | true | 71 | 0 | 0 | 2.80 | |||||
| IL_82107.4_Instance_17 IL_82107.4,IL_8P9A_381,A300_U116 | A | A | U | CG | U | |||||||||||
| IL_82107.4_Sequence_17 IL_82107.48P9A_A300_U116 | A | A | * | U | CG | U | true | 69 | 0 | 0 | 2.94 | |||||
| IL_82107.4_Instance_18 IL_82107.4,IL_1U9S_003,U116_A227 | U | G | C | AA | A | |||||||||||
| IL_82107.4_Sequence_18 IL_82107.41U9S_U116_A227 | U | G | * | C | AA | A | true | 98 | 0 | 0 | 0.20 | |||||
| IL_82107.4_Instance_19 IL_82107.4,IL_4WF9_071,U1868_A1928 | U | G | U | AA | A | |||||||||||
| IL_82107.4_Sequence_19 IL_82107.44WF9_U_1868_A_1928 | U | G | * | U | AA | A | true | 100 | 0 | 0 | 0.00 | |||||
| IL_82107.4_Instance_20 IL_82107.4,IL_5J7L_005,U103_A66 | U | G | C | GA | A | |||||||||||
| IL_82107.4_Sequence_20 IL_82107.45J7L_U103_A66 | U | G | * | C | GA | A | true | 85 | 0 | 0 | 1.43 | |||||
| IL_82107.4_Instance_21 IL_82107.4,IL_4LFB_005,C103_G66 | C | G | C | GU | G | |||||||||||
| IL_82107.4_Sequence_21 IL_82107.44LFB_C103_G66 | C | G | * | C | GU | G | true | 72 | 0 | 0 | 2.63 | |||||
| IL_82107.4_Instance_22 IL_82107.4,IL_4V9F_021,C726_G702 | C | G | C | AU | G | |||||||||||
| IL_82107.4_Sequence_22 IL_82107.44V9F_C726_G702 | C | G | * | C | AU | G | true | 85 | 0 | 0 | 1.40 | |||||
| IL_82107.4_Instance_23 IL_82107.4,IL_1NBS_009,U181_A231 | U | G | U | AA | A | |||||||||||
| IL_82107.4_Sequence_23 IL_82107.41NBS_U181_A231 | U | G | * | U | AA | A | true | 100 | 0 | 0 | 0.00 | |||||
| IL_82107.4_Instance_24 IL_82107.4,IL_5M0H_004,A35_U11 | A | C | G | AA | U | |||||||||||
| IL_82107.4_Sequence_24 IL_82107.45M0H_A35_U11 | A | C | * | G | AA | U | true | 97 | 0 | 0 | 0.29 | |||||
| IL_82107.4_Instance_25 IL_82107.4,IL_4YAZ_008,G51_C67 | G | G | C | AG | C | |||||||||||
| IL_82107.4_Sequence_25 IL_82107.44YAZ_G51_C67 | G | G | * | C | AG | C | true | 85 | 0 | 0 | 1.43 | |||||
| IL_82107.4_Instance_26 IL_82107.4,IL_4YAZ_007,C68_G50 | C | G | U | AA | G | |||||||||||
| IL_82107.4_Sequence_26 IL_82107.44YAZ_C68_G50 | C | G | * | U | AA | G | true | 98 | 0 | 0 | 0.15 | |||||
| IL_82107.4_Instance_27 IL_82107.4,IL_9DID_004,A15_U74 | A | C | U | A | U | U | ||||||||||
| IL_82107.4_Sequence_27 IL_82107.49DID_A15_U74 | A | C | U | * | A | U | U | true | 19 | 0 | 0 | 7.66 | ||||
| IL_82107.4_Instance_28 IL_82107.4,IL_8CRE_070,G1619_C1818 | G | G | U | UU | C | |||||||||||
| IL_82107.4_Sequence_28 IL_82107.48CRE_G_1619_C_1818 | G | G | * | U | UU | C | true | 78 | 0 | 0 | 2.08 | |||||
| IL_82107.4_Instance_29 IL_82107.4,IL_7JJU_001,G36_C9 | G | A | A | U | AG | C | ||||||||||
| IL_82107.4_Sequence_29 IL_82107.47JJU_G36_C9 | G | A | A | * | U | AG | C | true | 53 | 0 | 0 | 4.42 | ||||
| IL_82107.4_Instance_30 IL_82107.4,IL_7JJU_003,G36_C9 | G | A | A | U | AG | C | ||||||||||
| IL_82107.4_Sequence_30 IL_82107.47JJU_G36_C9 | G | A | A | * | U | AG | C | true | 53 | 0 | 0 | 4.42 |
1 2 s35 1 4 cWW 2 3 cWW 2 4 s55JAR3D SCFG/MRF model for IL_82107.4:
Character Definition | A,C,G,U,* // Identity and order of characters in matrices InitialNode | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node BasepairNode | Deletion Probability [0.0000000004344338] | Pair Probability [[0.007352364,0.015458058,0.008132561,0.234302393,0.000000000],[0.014892494,0.007575875,0.187107197,0.009242303,0.000000000],[0.008118683,0.218624531,0.001617322,0.026794729,0.000000000],[0.218227615,0.009329764,0.024878966,0.008345147,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.898444648,0.101305830,0.000241204,0.000008317] | Left Letter Distribution [0.500000000,0.300000000,0.100000000,0.100000000,0.000000000] | Right Length Distribution [0.000055366,0.034825457,0.963430501,0.001608394,0.000080281] | Right Letter Distribution [0.532786885,0.122950820,0.155737705,0.188524590,0.000000000] | Left Index [1] | Right Index [4] // Basepair A3 - U23 cWW BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009462367,0.102416152,0.009542731,0.151921384,0.000000000],[0.012944891,0.008540487,0.145167079,0.010476313,0.000000000],[0.009435297,0.170514653,0.001995658,0.208970182,0.000000000],[0.112941808,0.010985606,0.016729665,0.017955727,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair C4 - G20 cWW HairpinNode | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type * Interaction | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncationSequences of instances from IL_82107.4:
> IL_82107.4 5WTK A 3 U 23 AC*GACU > IL_82107.4 7OS0 A 11 U 32 AC*GACU > IL_82107.4 3MXH G 56 C 84 GG*UAGC > IL_82107.4 3IWN G 46 C 79 GG*UAGC > IL_82107.4 4V9F U 1897 A 1942 UG*UCAA > IL_82107.4 5XWP A 5 U 25 AC*GACU > IL_82107.4 8SP9 C 106 G 79 CG*CUAG > IL_82107.4 5J7L U 1841 A 1901 UG*UAAA > IL_82107.4 8CRE U 2178 A 2222 UG*UAAA > IL_82107.4 1FUF G 23 C 8 GG*UUUC > IL_82107.4 8P9A U 2200 A 2244 UG*UAAA > IL_82107.4 1FUF G 9 C 22 GG*UUUC > IL_82107.4 5W1H A -23 U -4 AG*CAAU > IL_82107.4 5WLH A -23 U -4 AG*CAAU > IL_82107.4 8CRE A 298 U 116 AA*UCGU > IL_82107.4 6IV9 A -29 U -6 AC*GUCU > IL_82107.4 8P9A A 300 U 116 AA*UCGU > IL_82107.4 1U9S U 116 A 227 UG*CAAA > IL_82107.4 4WF9 U 1868 A 1928 UG*UAAA > IL_82107.4 5J7L U 103 A 66 UG*CGAA > IL_82107.4 4LFB C 103 G 66 CG*CGUG > IL_82107.4 4V9F C 726 G 702 CG*CAUG > IL_82107.4 1NBS U 181 A 231 UG*UAAA > IL_82107.4 5M0H A 35 U 11 AC*GAAU > IL_82107.4 4YAZ G 51 C 67 GG*CAGC > IL_82107.4 4YAZ C 68 G 50 CG*UAAG > IL_82107.4 9DID A 15 U 74 ACU*AUU > IL_82107.4 8CRE G 1619 C 1818 GG*UUUC > IL_82107.4 7JJU G 36 C 9 GAA*UAGC > IL_82107.4 7JJU G 36 C 9 GAA*UAGC