Alignment of IL_89505.4 sequences from 3D to the JAR3D model

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The correspondence between sequences from 3D structures and the motif group is shown in blue and the JAR3D alignment of the sequences to the motif group is shown in black. Occasionally the two disagree, in which case the JAR3D alignment is shown in red.
Column number:
Node in JAR3D model:
Insertion positions indicated by I:
Position in motif group:		1
1
I

2
2

1
3
2
I

4
3

2
5
4
I

6
5

3
7
5
I

8
6


9
5
I

10
5

4
11
2
I

12
2

5
13
1
I


In
acceptance
region

Cutoff
score
Full
edit
distance
Interior
edit
distance
Alignment
score
deficit
IL_89505.4_Instance_1 IL_89505.4,IL_8CRE_422,G555_C585GUCGC
IL_89505.4_Sequence_1 IL_89505.48CRE_G555_C585GUC*GCtrue99000.13
IL_89505.4_Instance_2 IL_89505.4,IL_8P9A_403,G557_C587GUCGC
IL_89505.4_Sequence_2 IL_89505.48P9A_G557_C587GUC*GCtrue99000.13
IL_89505.4_Instance_3 IL_89505.4,IL_8P9A_372,A89_U69AUCGU
IL_89505.4_Sequence_3 IL_89505.48P9A_A89_U69AUC*GUtrue90000.92
IL_89505.4_Instance_4 IL_89505.4,IL_8CRE_098,G2387_C2784GUUAC
IL_89505.4_Sequence_4 IL_89505.48CRE_G_2387_C_2784GUU*ACtrue93000.70
IL_89505.4_Instance_5 IL_89505.4,IL_6LT7_001,G46_C42GUUAC
IL_89505.4_Sequence_5 IL_89505.46LT7_G46_C42GUU*ACtrue93000.70
IL_89505.4_Instance_6 IL_89505.4,IL_8CRE_056,G1203_C1293GUGCC
IL_89505.4_Sequence_6 IL_89505.48CRE_G_1203_C_1293GUG*CCtrue100000.00
IL_89505.4_Instance_7 IL_89505.4,IL_8P9A_321,G2409_C2812GUUAC
IL_89505.4_Sequence_7 IL_89505.48P9A_G_2409_C_2812GUU*ACtrue93000.70
IL_89505.4_Instance_8 IL_89505.4,IL_9DFE_080,G2067_C2443GUGCC
IL_89505.4_Sequence_8 IL_89505.49DFE_G_2067_C_2443GUG*CCtrue100000.00
IL_89505.4_Instance_9 IL_89505.4,IL_7KVT_002,G50_C67GUAUC
IL_89505.4_Sequence_9 IL_89505.47KVT_G50_C67GUA*UCtrue93000.64
IL_89505.4_Instance_10 IL_89505.4,IL_5J7L_017,U367_A393UUGCA
IL_89505.4_Sequence_10 IL_89505.45J7L_U367_A393UUG*CAtrue88001.14
IL_89505.4_Instance_11 IL_89505.4,IL_8P9A_396,U439_A464UUAUA
IL_89505.4_Sequence_11 IL_89505.48P9A_U439_A464UUA*UAtrue81001.78
IL_89505.4_Instance_12 IL_89505.4,IL_8P9A_281,G1207_C1297GUGCC
IL_89505.4_Sequence_12 IL_89505.48P9A_G_1207_C_1297GUG*CCtrue100000.00
IL_89505.4_Instance_13 IL_89505.4,IL_8CRE_413,U437_A462UUAUA
IL_89505.4_Sequence_13 IL_89505.48CRE_U437_A462UUA*UAtrue81001.78
IL_89505.4_Instance_14 IL_89505.4,IL_8P9A_427,G1051_C1067GUGCC
IL_89505.4_Sequence_14 IL_89505.48P9A_G_1051_C_1067GUG*CCtrue100000.00
IL_89505.4_Instance_15 IL_89505.4,IL_9DFE_037,G1011_C1150GUCGC
IL_89505.4_Sequence_15 IL_89505.49DFE_G_1011_C_1150GUC*GCtrue99000.13
IL_89505.4_Instance_16 IL_89505.4,IL_3MEI_001,C15_G8CUGCG
IL_89505.4_Sequence_16 IL_89505.43MEI_C15_G8CUG*CGtrue89001.05
IL_89505.4_Instance_17 IL_89505.4,IL_7VTI_004,G21_C15GUGCC
IL_89505.4_Sequence_17 IL_89505.47VTI_G21_C15GUG*CCtrue100000.00
IL_89505.4_Instance_18 IL_89505.4,IL_4LFB_014,U367_A393UUCGA
IL_89505.4_Sequence_18 IL_89505.44LFB_U367_A393UUC*GAtrue87001.27
IL_89505.4_Instance_19 IL_89505.4,IL_4V9F_039,G1108_C1254GUGCC
IL_89505.4_Sequence_19 IL_89505.44V9F_G_1108_C_1254GUG*CCtrue100000.00
IL_89505.4_Instance_20 IL_89505.4,IL_2A64_002,G51_C396GUCGC
IL_89505.4_Sequence_20 IL_89505.42A64_G51_C396GUC*GCtrue99000.13
IL_89505.4_Instance_21 IL_89505.4,IL_8CRE_053,A1176_U1321AUGCU
IL_89505.4_Sequence_21 IL_89505.48CRE_A_1176_U_1321AUG*CUtrue92000.79
IL_89505.4_Instance_22 IL_89505.4,IL_3D2V_001,G73_C6GUGCC
IL_89505.4_Sequence_22 IL_89505.43D2V_G73_C6GUG*CCtrue100000.00
IL_89505.4_Instance_23 IL_89505.4,IL_5J7L_388,G2067_C2443GUGCC
IL_89505.4_Sequence_23 IL_89505.45J7L_G_2067_C_2443GUG*CCtrue100000.00
IL_89505.4_Instance_24 IL_89505.4,IL_7A0S_075,G2050_C2422GUGCC
IL_89505.4_Sequence_24 IL_89505.47A0S_G_2050_C_2422GUG*CCtrue100000.00
IL_89505.4_Instance_25 IL_89505.4,IL_8CRE_003,A12_U145AUCGU
IL_89505.4_Sequence_25 IL_89505.48CRE_A12_U145AUC*GUtrue90000.92
IL_89505.4_Instance_26 IL_89505.4,IL_8P9A_232,A13_U145AUCGU
IL_89505.4_Sequence_26 IL_89505.48P9A_A13_U145AUC*GUtrue90000.92
IL_89505.4_Instance_27 IL_89505.4,IL_4WF9_080,G2094_C2470GUGCC
IL_89505.4_Sequence_27 IL_89505.44WF9_G_2094_C_2470GUG*CCtrue100000.00
IL_89505.4_Instance_28 IL_89505.4,IL_5J7L_279,G1011_C1150GUCGC
IL_89505.4_Sequence_28 IL_89505.45J7L_G_1011_C_1150GUC*GCtrue99000.13
IL_89505.4_Instance_29 IL_89505.4,IL_4V9F_107,G86_C96GUGCC
IL_89505.4_Sequence_29 IL_89505.44V9F_G86_C96GUG*CCtrue100000.00
IL_89505.4_Instance_30 IL_89505.4,IL_4V9F_074,A2108_U2478AUGCU
IL_89505.4_Sequence_30 IL_89505.44V9F_A_2108_U_2478AUG*CUtrue92000.79
IL_89505.4_Instance_31 IL_89505.4,IL_2OIU_003,G18_C42GUUAC
IL_89505.4_Sequence_31 IL_89505.42OIU_G18_C42GUU*ACtrue93000.70
IL_89505.4_Instance_32 IL_89505.4,IL_6UFH_004,U139_G155UUCGG
IL_89505.4_Sequence_32 IL_89505.46UFH_U139_G155UUC*GGtrue82001.69
IL_89505.4_Instance_33 IL_89505.4,IL_8F5G_001,A5_U22AUCGU
IL_89505.4_Sequence_33 IL_89505.48F5G_A5_U22AUC*GUtrue90000.92
IL_89505.4_Instance_34 IL_89505.4,IL_5J7L_046,G1048_C1209GUGCC
IL_89505.4_Sequence_34 IL_89505.45J7L_G_1048_C_1209GUG*CCtrue100000.00
IL_89505.4_Instance_35 IL_89505.4,IL_4WF9_038,A1055_U1194AUAUU
IL_89505.4_Sequence_35 IL_89505.44WF9_A_1055_U_1194AUA*UUtrue85001.42
IL_89505.4_Instance_36 IL_89505.4,IL_2PJP_001,G16_C30GUUAC
IL_89505.4_Sequence_36 IL_89505.42PJP_G16_C30GUU*ACtrue93000.70
IL_89505.4_Instance_37 IL_89505.4,IL_8CRE_451,G1253_C1427GUGCC
IL_89505.4_Sequence_37 IL_89505.48CRE_G_1253_C_1427GUG*CCtrue100000.00
IL_89505.4_Instance_38 IL_89505.4,IL_8TQX_001,G14_C5GUAUC
IL_89505.4_Sequence_38 IL_89505.48TQX_G14_C5GUA*UCtrue93000.64
IL_89505.4_Instance_39 IL_89505.4,IL_8P9A_437,G1268_C1441GUGCC
IL_89505.4_Sequence_39 IL_89505.48P9A_G_1268_C_1441GUG*CCtrue100000.00
IL_89505.4_Instance_40 IL_89505.4,IL_2PN3_003,G105_C62GUGUC
IL_89505.4_Sequence_40 IL_89505.42PN3_G105_C62GUG*UCtrue79001.97
IL_89505.4_Instance_41 IL_89505.4,IL_8CRE_140,G3305_C3329GUAUC
IL_89505.4_Sequence_41 IL_89505.48CRE_G_3305_C_3329GUA*UCtrue93000.64
IL_89505.4_Instance_42 IL_89505.4,IL_5J7L_298,G1459_C1451GUCGC
IL_89505.4_Sequence_42 IL_89505.45J7L_G_1459_C_1451GUC*GCtrue99000.13
IL_89505.4_Instance_43 IL_89505.4,IL_8P9A_357,G3318_C3388GUAUC
IL_89505.4_Sequence_43 IL_89505.48P9A_G_3318_C_3388GUA*UCtrue93000.64
IL_89505.4_Instance_44 IL_89505.4,IL_4LFB_046,C1195_G1061CUGCG
IL_89505.4_Sequence_44 IL_89505.44LFB_C_1195_G_1061CUG*CGtrue89001.05
IL_89505.4_Instance_45 IL_89505.4,IL_4FRG_002,G23_C40GUGCC
IL_89505.4_Sequence_45 IL_89505.44FRG_G23_C40GUG*CCtrue100000.00
IL_89505.4_Instance_46 IL_89505.4,IL_3TZR_002,G105_C62GUGUC
IL_89505.4_Sequence_46 IL_89505.43TZR_G105_C62GUG*UCtrue79001.97
IL_89505.4_Instance_47 IL_89505.4,IL_8CRE_136,G3283_C3353GUAUC
IL_89505.4_Sequence_47 IL_89505.48CRE_G_3283_C_3353GUA*UCtrue93000.64
IL_89505.4_Instance_48 IL_89505.4,IL_4LFB_042,G1048_C1209GUGCC
IL_89505.4_Sequence_48 IL_89505.44LFB_G_1048_C_1209GUG*CCtrue100000.00
IL_89505.4_Instance_49 IL_89505.4,IL_3WBM_001,G2_C24GUAUC
IL_89505.4_Sequence_49 IL_89505.43WBM_G2_C24GUA*UCtrue93000.64
IL_89505.4_Instance_50 IL_89505.4,IL_8P9A_278,A1180_U1325AUAUU
IL_89505.4_Sequence_50 IL_89505.48P9A_A_1180_U_1325AUA*UUtrue85001.42
IL_89505.4_Instance_51 IL_89505.4,IL_7PMQ_002,A24_U41AUAUU
IL_89505.4_Sequence_51 IL_89505.47PMQ_A24_U41AUA*UUtrue85001.42
IL_89505.4_Instance_52 IL_89505.4,IL_8P9A_361,G3340_C3364GUAUC
IL_89505.4_Sequence_52 IL_89505.48P9A_G_3340_C_3364GUA*UCtrue93000.64
IL_89505.4_Instance_53 IL_89505.4,IL_6JQ5_003,A38_U56AUCGU
IL_89505.4_Sequence_53 IL_89505.46JQ5_A38_U56AUC*GUtrue90000.92
IL_89505.4_Instance_54 IL_89505.4,IL_3NDB_005,C139_G238CUCGG
IL_89505.4_Sequence_54 IL_89505.43NDB_C139_G238CUC*GGtrue88001.18
IL_89505.4_Instance_55 IL_89505.4,IL_6UFG_004,U138_G154UUCGG
IL_89505.4_Sequence_55 IL_89505.46UFG_U138_G154UUC*GGtrue82001.69
IL_89505.4_Instance_56 IL_89505.4,IL_6JQ5_006,A38_U56AUCGU
IL_89505.4_Sequence_56 IL_89505.46JQ5_A38_U56AUC*GUtrue90000.92
IL_89505.4_Instance_57 IL_89505.4,IL_8VMB_001,G40_C37GUGCC
IL_89505.4_Sequence_57 IL_89505.48VMB_G40_C37GUG*CCtrue100000.00
IL_89505.4_Instance_58 IL_89505.4,IL_6JQ6_006,A38_U56AUCGU
IL_89505.4_Sequence_58 IL_89505.46JQ6_A38_U56AUC*GUtrue90000.92
IL_89505.4_Instance_59 IL_89505.4,IL_2A64_003,G66_C78GUGCC
IL_89505.4_Sequence_59 IL_89505.42A64_G66_C78GUG*CCtrue100000.00
IL_89505.4_Instance_60 IL_89505.4,IL_4V9F_013,G307_C323GUCGC
IL_89505.4_Sequence_60 IL_89505.44V9F_G307_C323GUC*GCtrue99000.13
IL_89505.4_Instance_61 IL_89505.4,IL_4O26_001,G181_C194GUCGC
IL_89505.4_Sequence_61 IL_89505.44O26_G181_C194GUC*GCtrue99000.13
IL_89505.4_Instance_62 IL_89505.4,IL_2R8S_004,G129_C193GUUAC
IL_89505.4_Sequence_62 IL_89505.42R8S_G129_C193GUU*ACtrue93000.70
IL_89505.4_Instance_63 IL_89505.4,IL_5J7L_331,U2202_G2221UUGUG
IL_89505.4_Sequence_63 IL_89505.45J7L_U_2202_G_2221UUG*UGtrue63003.53
IL_89505.4_Instance_64 IL_89505.4,IL_7A0S_035,A1022_U1161AUGCU
IL_89505.4_Sequence_64 IL_89505.47A0S_A_1022_U_1161AUG*CUtrue92000.79
IL_89505.4_Instance_65 IL_89505.4,IL_8CRE_472,U1643_A1731UUGUA
IL_89505.4_Sequence_65 IL_89505.48CRE_U_1643_A_1731UUG*UAtrue67003.11
IL_89505.4_Instance_66 IL_89505.4,IL_8P9A_458,U1656_A1744UUGUA
IL_89505.4_Sequence_66 IL_89505.48P9A_U_1656_A_1744UUG*UAtrue67003.11
IL_89505.4_Instance_67 IL_89505.4,IL_3CUL_007,U17_G2UUCGG
IL_89505.4_Sequence_67 IL_89505.43CUL_U17_G2UUC*GGtrue82001.69
IL_89505.4_Instance_68 IL_89505.4,IL_4V9F_029,G834_C848GUGCC
IL_89505.4_Sequence_68 IL_89505.44V9F_G834_C848GUG*CCtrue100000.00
IL_89505.4_Instance_69 IL_89505.4,IL_3SNP_004,G18_C14GUUAC
IL_89505.4_Sequence_69 IL_89505.43SNP_G18_C14GUU*ACtrue93000.70
IL_89505.4_Instance_70 IL_89505.4,IL_8P9A_241,G189_C205GUUAC
IL_89505.4_Sequence_70 IL_89505.48P9A_G189_C205GUU*ACtrue93000.70
IL_89505.4_Instance_71 IL_89505.4,IL_8CRE_013,G188_C204GUUAC
IL_89505.4_Sequence_71 IL_89505.48CRE_G188_C204GUU*ACtrue93000.70
IL_89505.4_Instance_72 IL_89505.4,IL_8CRE_068,G1556_C1574GUGCC
IL_89505.4_Sequence_72 IL_89505.48CRE_G_1556_C_1574GUG*CCtrue100000.00
IL_89505.4_Instance_73 IL_89505.4,IL_8CRE_035,C869_G883CUGCG
IL_89505.4_Sequence_73 IL_89505.48CRE_C869_G883CUG*CGtrue89001.05
IL_89505.4_Instance_74 IL_89505.4,IL_8P9A_260,C873_G887CUGCG
IL_89505.4_Sequence_74 IL_89505.48P9A_C873_G887CUG*CGtrue89001.05
IL_89505.4_Instance_75 IL_89505.4,IL_7KKV_001,U497_G507UUUAG
IL_89505.4_Sequence_75 IL_89505.47KKV_U497_G507UUU*AGtrue76002.27
IL_89505.4_Instance_76 IL_89505.4,IL_6MWN_006,U659_A647UUCGA
IL_89505.4_Sequence_76 IL_89505.46MWN_U659_A647UUC*GAtrue87001.27
IL_89505.4_Instance_77 IL_89505.4,IL_7PMM_002,A15_U32AUAUU
IL_89505.4_Sequence_77 IL_89505.47PMM_A15_U32AUA*UUtrue85001.42
IL_89505.4_Instance_78 IL_89505.4,IL_8K85_008,U30_G21UUGCG
IL_89505.4_Sequence_78 IL_89505.48K85_U30_G21UUG*CGtrue84001.56
IL_89505.4_Instance_79 IL_89505.4,IL_8P9A_358,U3381_G3325UUGCG
IL_89505.4_Sequence_79 IL_89505.48P9A_U_3381_G_3325UUG*CGtrue84001.56
IL_89505.4_Instance_80 IL_89505.4,IL_8P9A_314,C2204_G2238CUGCG
IL_89505.4_Sequence_80 IL_89505.48P9A_C_2204_G_2238CUG*CGtrue89001.05
IL_89505.4_Instance_81 IL_89505.4,IL_8VMA_002,G40_C37GUGCC
IL_89505.4_Sequence_81 IL_89505.48VMA_G40_C37GUG*CCtrue100000.00
IL_89505.4_Instance_82 IL_89505.4,IL_8KAL_003,G58_C55GUCGC
IL_89505.4_Sequence_82 IL_89505.48KAL_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_83 IL_89505.4,IL_4WF9_030,A969_U898AUUAU
IL_89505.4_Sequence_83 IL_89505.44WF9_A969_U898AUU*AUtrue84001.49
IL_89505.4_Instance_84 IL_89505.4,IL_5FQ5_002,G58_C55GUCGC
IL_89505.4_Sequence_84 IL_89505.45FQ5_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_85 IL_89505.4,IL_7QQP_002,G58_C55GUCGC
IL_89505.4_Sequence_85 IL_89505.47QQP_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_86 IL_89505.4,IL_7QR8_002,G58_C55GUCGC
IL_89505.4_Sequence_86 IL_89505.47QR8_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_87 IL_89505.4,IL_7QQX_002,G58_C55GUCGC
IL_89505.4_Sequence_87 IL_89505.47QQX_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_88 IL_89505.4,IL_5B2T_002,G58_C55GUCGC
IL_89505.4_Sequence_88 IL_89505.45B2T_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_89 IL_89505.4,IL_7QR0_002,G58_C55GUCGC
IL_89505.4_Sequence_89 IL_89505.47QR0_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_90 IL_89505.4,IL_7ZO1_002,G58_C55GUCGC
IL_89505.4_Sequence_90 IL_89505.47ZO1_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_91 IL_89505.4,IL_5VW1_002,G58_C55GUCGC
IL_89505.4_Sequence_91 IL_89505.45VW1_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_92 IL_89505.4,IL_6M0X_002,A59_U56AUGCU
IL_89505.4_Sequence_92 IL_89505.46M0X_A59_U56AUG*CUtrue92000.79
IL_89505.4_Instance_93 IL_89505.4,IL_8CRE_407,G277_C274GUGCC
IL_89505.4_Sequence_93 IL_89505.48CRE_G277_C274GUG*CCtrue100000.00
IL_89505.4_Instance_94 IL_89505.4,IL_8KAJ_003,G58_C55GUCGC
IL_89505.4_Sequence_94 IL_89505.48KAJ_G58_C55GUC*GCtrue99000.13
IL_89505.4_Instance_95 IL_89505.4,IL_8P9A_253,A775_U756AUUAU
IL_89505.4_Sequence_95 IL_89505.48P9A_A775_U756AUU*AUtrue84001.49
IL_89505.4_Instance_96 IL_89505.4,IL_8CRE_027,A771_U752AUUAU
IL_89505.4_Sequence_96 IL_89505.48CRE_A771_U752AUU*AUtrue84001.49
IL_89505.4_Instance_97 IL_89505.4,IL_8TQX_002,G14_C5GUAUC
IL_89505.4_Sequence_97 IL_89505.48TQX_G14_C5GUA*UCtrue93000.64
IL_89505.4_Instance_98 IL_89505.4,IL_5F9R_003,G76_C73GUCGC
IL_89505.4_Sequence_98 IL_89505.45F9R_G76_C73GUC*GCtrue99000.13
IL_89505.4_Instance_99 IL_89505.4,IL_8CRE_137,U3346_G3290UUGCG
IL_89505.4_Sequence_99 IL_89505.48CRE_U_3346_G_3290UUG*CGtrue84001.56
IL_89505.4_Instance_100 IL_89505.4,IL_2UWM_003,C25_G22CUGCG
IL_89505.4_Sequence_100 IL_89505.42UWM_C25_G22CUG*CGtrue89001.05
IL_89505.4_Instance_101 IL_89505.4,IL_6JDV_003,G95_C82GUGCC
IL_89505.4_Sequence_101 IL_89505.46JDV_G95_C82GUG*CCtrue100000.00
IL_89505.4_Instance_102 IL_89505.4,IL_2ZY6_002,G10_C25GUGCC
IL_89505.4_Sequence_102 IL_89505.42ZY6_G10_C25GUG*CCtrue100000.00
IL_89505.4_Instance_103 IL_89505.4,IL_5J7L_334,U2401_G2415UUCGG
IL_89505.4_Sequence_103 IL_89505.45J7L_U_2401_G_2415UUC*GGtrue82001.69
IL_89505.4_Instance_104 IL_89505.4,IL_4C7O_001,G38_C8GUAUC
IL_89505.4_Sequence_104 IL_89505.44C7O_G38_C8GUA*UCtrue93000.64
IL_89505.4_Instance_105 IL_89505.4,IL_3KTW_010,U178_G153UUCGG
IL_89505.4_Sequence_105 IL_89505.43KTW_U178_G153UUC*GGtrue82001.69
IL_89505.4_Instance_106 IL_89505.4,IL_4WF9_088,U2428_G2442UUCGG
IL_89505.4_Sequence_106 IL_89505.44WF9_U_2428_G_2442UUC*GGtrue82001.69
IL_89505.4_Instance_107 IL_89505.4,IL_8P9A_390,G279_C276GUGCC
IL_89505.4_Sequence_107 IL_89505.48P9A_G279_C276GUG*CCtrue100000.00
IL_89505.4_Instance_108 IL_89505.4,IL_4KZD_001,C74_G11CUGCG
IL_89505.4_Sequence_108 IL_89505.44KZD_C74_G11CUG*CGtrue89001.05
IL_89505.4_Instance_109 IL_89505.4,IL_1ET4_002,G226_C219GUGCC
IL_89505.4_Sequence_109 IL_89505.41ET4_G226_C219GUG*CCtrue100000.00
IL_89505.4_Instance_110 IL_89505.4,IL_3W3S_002,G43_C27GUGCC
IL_89505.4_Sequence_110 IL_89505.43W3S_G43_C27GUG*CCtrue100000.00
IL_89505.4_Instance_111 IL_89505.4,IL_8K85_005,U30_G21UUGCG
IL_89505.4_Sequence_111 IL_89505.48K85_U30_G21UUG*CGtrue84001.56
IL_89505.4_Instance_112 IL_89505.4,IL_1S03_001,A6_U42AUGCU
IL_89505.4_Sequence_112 IL_89505.41S03_A6_U42AUG*CUtrue92000.79
IL_89505.4_Instance_113 IL_89505.4,IL_1S03_005,A6_U42AUGCU
IL_89505.4_Sequence_113 IL_89505.41S03_A6_U42AUG*CUtrue92000.79
IL_89505.4_Instance_114 IL_89505.4,IL_5LYS_008,C62_G46CUGCG
IL_89505.4_Sequence_114 IL_89505.45LYS_C62_G46CUG*CGtrue89001.05
IL_89505.4_Instance_115 IL_89505.4,IL_7A0S_079,U2197_A2187UUCGA
IL_89505.4_Sequence_115 IL_89505.47A0S_U_2197_A_2187UUC*GAtrue87001.27
IL_89505.4_Instance_116 IL_89505.4,IL_3IWN_003,C42_G82CUCGG
IL_89505.4_Sequence_116 IL_89505.43IWN_C42_G82CUC*GGtrue88001.18
IL_89505.4_Instance_117 IL_89505.4,IL_3MXH_003,C52_G87CUCGG
IL_89505.4_Sequence_117 IL_89505.43MXH_C52_G87CUC*GGtrue88001.18

Conserved interactions between motif group positions in IL_89505.4:
1 3 s35 
1 5 cWW 
3 4 cWW 
3 5 s55 
4 5 s35
JAR3D SCFG/MRF model for IL_89505.4:
Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.004580792,0.009137496,0.005226938,0.178839264,0.000000000],[0.022130926,0.005393351,0.137733777,0.006092065,0.000000000],[0.005213880,0.392363068,0.001035430,0.013857721,0.000000000],[0.124939081,0.006170228,0.082204204,0.005081779,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair G555 - C585 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.004201681,0.004201681,0.004201681,0.987394958,0.000000000] | Position [1] | Left Index [2] | Right Index [4] // Fixed node on left for 8CRE|1|CM|U|556
InitialNode  | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.004604158,0.014563513,0.005124765,0.160930316,0.000000000],[0.008737818,0.004594439,0.267259117,0.006050736,0.000000000],[0.005114498,0.304438039,0.001000081,0.042497904,0.000000000],[0.150602346,0.006098936,0.012882139,0.005501193,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair C557 - G584 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
Sequences of instances from IL_89505.4:
> IL_89505.4  8CRE G  555 C  585
GUC*GC
> IL_89505.4  8P9A G  557 C  587
GUC*GC
> IL_89505.4  8P9A A   89 U   69
AUC*GU
> IL_89505.4  8CRE G 2387 C 2784
GUU*AC
> IL_89505.4  6LT7 G   46 C   42
GUU*AC
> IL_89505.4  8CRE G 1203 C 1293
GUG*CC
> IL_89505.4  8P9A G 2409 C 2812
GUU*AC
> IL_89505.4  9DFE G 2067 C 2443
GUG*CC
> IL_89505.4  7KVT G   50 C   67
GUA*UC
> IL_89505.4  5J7L U  367 A  393
UUG*CA
> IL_89505.4  8P9A U  439 A  464
UUA*UA
> IL_89505.4  8P9A G 1207 C 1297
GUG*CC
> IL_89505.4  8CRE U  437 A  462
UUA*UA
> IL_89505.4  8P9A G 1051 C 1067
GUG*CC
> IL_89505.4  9DFE G 1011 C 1150
GUC*GC
> IL_89505.4  3MEI C   15 G    8
CUG*CG
> IL_89505.4  7VTI G   21 C   15
GUG*CC
> IL_89505.4  4LFB U  367 A  393
UUC*GA
> IL_89505.4  4V9F G 1108 C 1254
GUG*CC
> IL_89505.4  2A64 G   51 C  396
GUC*GC
> IL_89505.4  8CRE A 1176 U 1321
AUG*CU
> IL_89505.4  3D2V G   73 C    6
GUG*CC
> IL_89505.4  5J7L G 2067 C 2443
GUG*CC
> IL_89505.4  7A0S G 2050 C 2422
GUG*CC
> IL_89505.4  8CRE A   12 U  145
AUC*GU
> IL_89505.4  8P9A A   13 U  145
AUC*GU
> IL_89505.4  4WF9 G 2094 C 2470
GUG*CC
> IL_89505.4  5J7L G 1011 C 1150
GUC*GC
> IL_89505.4  4V9F G   86 C   96
GUG*CC
> IL_89505.4  4V9F A 2108 U 2478
AUG*CU
> IL_89505.4  2OIU G   18 C   42
GUU*AC
> IL_89505.4  6UFH U  139 G  155
UUC*GG
> IL_89505.4  8F5G A    5 U   22
AUC*GU
> IL_89505.4  5J7L G 1048 C 1209
GUG*CC
> IL_89505.4  4WF9 A 1055 U 1194
AUA*UU
> IL_89505.4  2PJP G   16 C   30
GUU*AC
> IL_89505.4  8CRE G 1253 C 1427
GUG*CC
> IL_89505.4  8TQX G   14 C    5
GUA*UC
> IL_89505.4  8P9A G 1268 C 1441
GUG*CC
> IL_89505.4  2PN3 G  105 C   62
GUG*UC
> IL_89505.4  8CRE G 3305 C 3329
GUA*UC
> IL_89505.4  5J7L G 1459 C 1451
GUC*GC
> IL_89505.4  8P9A G 3318 C 3388
GUA*UC
> IL_89505.4  4LFB C 1195 G 1061
CUG*CG
> IL_89505.4  4FRG G   23 C   40
GUG*CC
> IL_89505.4  3TZR G  105 C   62
GUG*UC
> IL_89505.4  8CRE G 3283 C 3353
GUA*UC
> IL_89505.4  4LFB G 1048 C 1209
GUG*CC
> IL_89505.4  3WBM G    2 C   24
GUA*UC
> IL_89505.4  8P9A A 1180 U 1325
AUA*UU
> IL_89505.4  7PMQ A   24 U   41
AUA*UU
> IL_89505.4  8P9A G 3340 C 3364
GUA*UC
> IL_89505.4  6JQ5 A   38 U   56
AUC*GU
> IL_89505.4  3NDB C  139 G  238
CUC*GG
> IL_89505.4  6UFG U  138 G  154
UUC*GG
> IL_89505.4  6JQ5 A   38 U   56
AUC*GU
> IL_89505.4  8VMB G   40 C   37
GUG*CC
> IL_89505.4  6JQ6 A   38 U   56
AUC*GU
> IL_89505.4  2A64 G   66 C   78
GUG*CC
> IL_89505.4  4V9F G  307 C  323
GUC*GC
> IL_89505.4  4O26 G  181 C  194
GUC*GC
> IL_89505.4  2R8S G  129 C  193
GUU*AC
> IL_89505.4  5J7L U 2202 G 2221
UUG*UG
> IL_89505.4  7A0S A 1022 U 1161
AUG*CU
> IL_89505.4  8CRE U 1643 A 1731
UUG*UA
> IL_89505.4  8P9A U 1656 A 1744
UUG*UA
> IL_89505.4  3CUL U   17 G    2
UUC*GG
> IL_89505.4  4V9F G  834 C  848
GUG*CC
> IL_89505.4  3SNP G   18 C   14
GUU*AC
> IL_89505.4  8P9A G  189 C  205
GUU*AC
> IL_89505.4  8CRE G  188 C  204
GUU*AC
> IL_89505.4  8CRE G 1556 C 1574
GUG*CC
> IL_89505.4  8CRE C  869 G  883
CUG*CG
> IL_89505.4  8P9A C  873 G  887
CUG*CG
> IL_89505.4  7KKV U  497 G  507
UUU*AG
> IL_89505.4  6MWN U  659 A  647
UUC*GA
> IL_89505.4  7PMM A   15 U   32
AUA*UU
> IL_89505.4  8K85 U   30 G   21
UUG*CG
> IL_89505.4  8P9A U 3381 G 3325
UUG*CG
> IL_89505.4  8P9A C 2204 G 2238
CUG*CG
> IL_89505.4  8VMA G   40 C   37
GUG*CC
> IL_89505.4  8KAL G   58 C   55
GUC*GC
> IL_89505.4  4WF9 A  969 U  898
AUU*AU
> IL_89505.4  5FQ5 G   58 C   55
GUC*GC
> IL_89505.4  7QQP G   58 C   55
GUC*GC
> IL_89505.4  7QR8 G   58 C   55
GUC*GC
> IL_89505.4  7QQX G   58 C   55
GUC*GC
> IL_89505.4  5B2T G   58 C   55
GUC*GC
> IL_89505.4  7QR0 G   58 C   55
GUC*GC
> IL_89505.4  7ZO1 G   58 C   55
GUC*GC
> IL_89505.4  5VW1 G   58 C   55
GUC*GC
> IL_89505.4  6M0X A   59 U   56
AUG*CU
> IL_89505.4  8CRE G  277 C  274
GUG*CC
> IL_89505.4  8KAJ G   58 C   55
GUC*GC
> IL_89505.4  8P9A A  775 U  756
AUU*AU
> IL_89505.4  8CRE A  771 U  752
AUU*AU
> IL_89505.4  8TQX G   14 C    5
GUA*UC
> IL_89505.4  5F9R G   76 C   73
GUC*GC
> IL_89505.4  8CRE U 3346 G 3290
UUG*CG
> IL_89505.4  2UWM C   25 G   22
CUG*CG
> IL_89505.4  6JDV G   95 C   82
GUG*CC
> IL_89505.4  2ZY6 G   10 C   25
GUG*CC
> IL_89505.4  5J7L U 2401 G 2415
UUC*GG
> IL_89505.4  4C7O G   38 C    8
GUA*UC
> IL_89505.4  3KTW U  178 G  153
UUC*GG
> IL_89505.4  4WF9 U 2428 G 2442
UUC*GG
> IL_89505.4  8P9A G  279 C  276
GUG*CC
> IL_89505.4  4KZD C   74 G   11
CUG*CG
> IL_89505.4  1ET4 G  226 C  219
GUG*CC
> IL_89505.4  3W3S G   43 C   27
GUG*CC
> IL_89505.4  8K85 U   30 G   21
UUG*CG
> IL_89505.4  1S03 A    6 U   42
AUG*CU
> IL_89505.4  1S03 A    6 U   42
AUG*CU
> IL_89505.4  5LYS C   62 G   46
CUG*CG
> IL_89505.4  7A0S U 2197 A 2187
UUC*GA
> IL_89505.4  3IWN C   42 G   82
CUC*GG
> IL_89505.4  3MXH C   52 G   87
CUC*GG