Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000002742290896] | Pair Probability [[0.007616767,0.013631137,0.008873864,0.164651631,0.000000000],[0.073924421,0.011232688,0.181557405,0.010241111,0.000000000],[0.008944073,0.165268252,0.001846015,0.020726326,0.000000000],[0.159590649,0.009965294,0.153232092,0.008698273,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.877368673,0.092123023,0.030453305,0.000052707,0.000002292] | Left Letter Distribution [0.214285714,0.071428571,0.071428571,0.642857143,0.000000000] | Right Length Distribution [0.544534612,0.212829798,0.242234759,0.000382507,0.000018324] | Right Letter Distribution [0.460000000,0.100000000,0.420000000,0.020000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair U429 - A630 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.012026214,0.212886471,0.017547247,0.017721795,0.000000000],[0.013467489,0.045681108,0.016521712,0.078193960,0.000000000],[0.016868910,0.017130199,0.003047856,0.043938483,0.000000000],[0.015753350,0.151456595,0.013513350,0.324245261,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair U430 - U629 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.007580968,0.027541873,0.008374980,0.185777216,0.000000000],[0.014276863,0.007544614,0.230597314,0.009821300,0.000000000],[0.008360285,0.230893610,0.001646337,0.051284487,0.000000000],[0.175840424,0.009898534,0.021138811,0.009422385,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair U431 - A628 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
