Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.006523925,0.011984413,0.007503431,0.137078606,0.000000000],[0.032040545,0.007753369,0.293160733,0.009008445,0.000000000],[0.007548503,0.198804037,0.001486000,0.016493245,0.000000000],[0.181175620,0.008772008,0.073547105,0.007120018,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair C5 - G4 cWW 
BasepairNode | Deletion Probability [0.0000200792489427] | Pair Probability [[0.026264074,0.000968232,0.050442470,0.022960470,0.000000000],[0.000743538,0.012753126,0.000743538,0.000743538,0.000000000],[0.120375995,0.004590917,0.685087873,0.016590463,0.000000000],[0.021514603,0.012982100,0.000743538,0.022495523,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.979384363,0.020547465,0.000067211,0.000000960] | Left Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Right Length Distribution [0.979384363,0.020547465,0.000067211,0.000000960] | Right Letter Distribution [0.500000000,0.166666667,0.166666667,0.166666667,0.000000000] | Left Index [2] | Right Index [5] // Basepair G6 - G3 cHW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.006586221,0.026572057,0.007241811,0.167511481,0.000000000],[0.011828336,0.006477970,0.205525124,0.008413984,0.000000000],[0.007196346,0.265401131,0.001422875,0.086618644,0.000000000],[0.156276596,0.008603581,0.025951827,0.008372015,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G7 - C2 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
