Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.010105956,0.014294290,0.012538510,0.074336848,0.000000000],[0.227638118,0.022507790,0.068249640,0.014086747,0.000000000],[0.012757176,0.074242340,0.002835564,0.018300194,0.000000000],[0.100545145,0.013190349,0.322292680,0.012078652,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair U7 - G22 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.016741257,0.014897014,0.041955243,0.018198591,0.000000000],[0.013575875,0.010812137,0.021416189,0.285830786,0.000000000],[0.039708464,0.042405319,0.003368294,0.036512912,0.000000000],[0.017094082,0.409556656,0.014955075,0.012972107,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair U8 - C21 cWW 
BasepairNode | Deletion Probability [0.0000141488146644] | Pair Probability [[0.078067699,0.015118939,0.041287581,0.018317064,0.000000000],[0.015492012,0.011752380,0.023072419,0.395686323,0.000000000],[0.042288810,0.022374564,0.003666644,0.016524013,0.000000000],[0.019267313,0.267022936,0.016982566,0.013078738,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.895351728,0.103902560,0.000720855,0.000024857] | Right Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair C9 - U20 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.013490579,0.223742772,0.012567813,0.099617307,0.000000000],[0.013809273,0.011284142,0.064117464,0.012941809,0.000000000],[0.012330652,0.077328212,0.002790039,0.318021113,0.000000000],[0.073610163,0.013912715,0.017797981,0.032637965,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair G10 - U19 cWW 
HairpinNode  | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
