Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [5] // Initial node
BasepairNode | Deletion Probability [0.0000000210112506] | Pair Probability [[0.009348761,0.038147238,0.010456812,0.170408364,0.000000000],[0.037974672,0.010389401,0.196909720,0.012323520,0.000000000],[0.010446456,0.206469380,0.002079245,0.055983327,0.000000000],[0.160739688,0.012410573,0.053888617,0.012024225,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.085066814,0.579969693,0.250740460,0.083809753,0.000396060,0.000017220] | Right Letter Distribution [0.527777778,0.194444444,0.027777778,0.250000000,0.000000000] | Left Index [1] | Right Index [5] // Basepair G41 - C6 cWW 
FixedNode    | Deletion Probability [0.0050000000000000] | Letter Distribution [0.607142857,0.107142857,0.107142857,0.178571429,0.000000000] | Position [1] | Left Index [2] | Right Index [4] // Fixed node on left for 2ET8|1|A|U|5
InitialNode  | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [1.000000000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // New Initial node after Fixed node
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009204057,0.038143215,0.010196140,0.182474066,0.000000000],[0.016794277,0.009018005,0.227863705,0.012191705,0.000000000],[0.010190093,0.209690660,0.001986965,0.056400376,0.000000000],[0.169679553,0.012266937,0.022151727,0.011748520,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair C43 - G4 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
