Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node
BasepairNode | Deletion Probability [0.0000000002895327] | Pair Probability [[0.008969761,0.014504301,0.010656642,0.136574671,0.000000000],[0.090299181,0.013352686,0.232102407,0.012912518,0.000000000],[0.010815234,0.139273999,0.002180738,0.018747938,0.000000000],[0.150727103,0.012244267,0.136715226,0.009923328,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.000000000,0.003038975,0.851419455,0.144857801,0.000658445,0.000025325] | Right Letter Distribution [0.421875000,0.390625000,0.015625000,0.171875000,0.000000000] | Left Index [1] | Right Index [4] // Basepair C2547 - G2609 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.008297200,0.017048681,0.009160150,0.204582216,0.000000000],[0.017794466,0.008685966,0.186404359,0.010355522,0.000000000],[0.009149365,0.204057250,0.001840014,0.027144774,0.000000000],[0.241414653,0.010248314,0.034463575,0.009353495,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair C2548 - G2606 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
