Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node
BasepairNode | Deletion Probability [0.0000000084804438] | Pair Probability [[0.008894382,0.017456687,0.009874685,0.200388445,0.000000000],[0.019919321,0.009382195,0.211811819,0.011398792,0.000000000],[0.009920382,0.190241337,0.001981207,0.027150094,0.000000000],[0.222684300,0.011022076,0.037919425,0.009954853,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.008193363,0.983203605,0.008193363,0.000409668] | Left Letter Distribution [0.437500000,0.062500000,0.062500000,0.437500000,0.000000000] | Right Length Distribution [0.497737557,0.497737557,0.004319210,0.000205677] | Right Letter Distribution [0.100000000,0.100000000,0.100000000,0.700000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair U34 - A60 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009004919,0.020901101,0.009727834,0.243134360,0.000000000],[0.016789640,0.009213063,0.188260006,0.010437069,0.000000000],[0.009692617,0.200658900,0.001971846,0.046963954,0.000000000],[0.189062828,0.011054541,0.022216105,0.010911216,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair A36 - U58 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
