Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.008032221,0.016254158,0.009105995,0.184155982,0.000000000],[0.015239427,0.008031998,0.219377157,0.010914397,0.000000000],[0.009072523,0.278419306,0.001741514,0.023494187,0.000000000],[0.174966950,0.011073712,0.021469355,0.008651118,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair G7 - C28 cWW 
BasepairNode | Deletion Probability [0.0000003223953951] | Pair Probability [[0.166399001,0.014257371,0.324672144,0.016633196,0.000000000],[0.048083333,0.009491110,0.017694617,0.031196661,0.000000000],[0.234602578,0.017648448,0.003371478,0.015304541,0.000000000],[0.029271882,0.032748883,0.027203319,0.011421437,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.182901112,0.815134090,0.001872216,0.000092582] | Left Letter Distribution [0.425000000,0.075000000,0.225000000,0.275000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A8 - A27 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.008626261,0.037041618,0.009603658,0.163007117,0.000000000],[0.036436504,0.009664800,0.177657300,0.011170114,0.000000000],[0.009570628,0.236692128,0.001921763,0.061844213,0.000000000],[0.153887491,0.011327515,0.060267879,0.011281012,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G10 - C26 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
