Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000123078457223] | Pair Probability [[0.008994095,0.017473699,0.010139100,0.187878483,0.000000000],[0.052071973,0.011317263,0.178507624,0.011446803,0.000000000],[0.010178292,0.177591655,0.002089611,0.028389242,0.000000000],[0.203872482,0.011207449,0.078529039,0.010313190,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.869396619,0.129517605,0.001046999,0.000038778] | Right Letter Distribution [0.166666667,0.166666667,0.500000000,0.166666667,0.000000000] | Left Index [1] | Right Index [6] // Basepair U1707 - A2024 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.079371218,0.381823760,0.003594008,0.039224897,0.000000000],[0.017478854,0.015453019,0.010565705,0.015598029,0.000000000],[0.003594008,0.013590840,0.060797022,0.290335951,0.000000000],[0.016908297,0.015073879,0.016699524,0.019890989,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A1708 - C2023 tWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.008980070,0.019966660,0.009915932,0.228492889,0.000000000],[0.016346286,0.009031307,0.187563177,0.011164675,0.000000000],[0.009848690,0.228575642,0.001950482,0.037767838,0.000000000],[0.186418153,0.011718511,0.021945816,0.010313871,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair A1709 - U2022 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
