Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.007253114,0.013699912,0.008242886,0.181833342,0.000000000],[0.027788027,0.008199773,0.282270141,0.009810792,0.000000000],[0.008298667,0.168056500,0.001633589,0.020963852,0.000000000],[0.192534686,0.009565865,0.051828173,0.008020681,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [1] | Right Index [8] // Basepair A5 - U20 cWW 
BasepairNode | Deletion Probability [0.0000209846238635] | Pair Probability [[0.011823422,0.153399812,0.016237784,0.017637607,0.000000000],[0.029224834,0.034050334,0.016775124,0.110855086,0.000000000],[0.016222751,0.026518020,0.003153692,0.032769014,0.000000000],[0.016282726,0.093918790,0.021146531,0.399984472,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.969093178,0.030790225,0.000114438,0.000002159] | Left Letter Distribution [0.166666667,0.166666667,0.166666667,0.500000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair C6 - U19 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.011725351,0.189011212,0.014540024,0.017716441,0.000000000],[0.012140299,0.012411945,0.015918332,0.122357310,0.000000000],[0.014161748,0.016451909,0.003012255,0.047253660,0.000000000],[0.015584383,0.089202364,0.012585451,0.405927317,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair U7 - U18 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.007429037,0.020970865,0.008350474,0.164338391,0.000000000],[0.013875484,0.007371580,0.225553960,0.009985920,0.000000000],[0.008320782,0.296175947,0.001607931,0.034906996,0.000000000],[0.162761128,0.010109058,0.019708730,0.008533718,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair G8 - C17 cWW 
HairpinNode  | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
