Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node
BasepairNode | Deletion Probability [0.0000000004344338] | Pair Probability [[0.007352364,0.015458058,0.008132561,0.234302393,0.000000000],[0.014892494,0.007575875,0.187107197,0.009242303,0.000000000],[0.008118683,0.218624531,0.001617322,0.026794729,0.000000000],[0.218227615,0.009329764,0.024878966,0.008345147,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.898444648,0.101305830,0.000241204,0.000008317] | Left Letter Distribution [0.500000000,0.300000000,0.100000000,0.100000000,0.000000000] | Right Length Distribution [0.000055366,0.034825457,0.963430501,0.001608394,0.000080281] | Right Letter Distribution [0.532786885,0.122950820,0.155737705,0.188524590,0.000000000] | Left Index [1] | Right Index [4] // Basepair A3 - U23 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009462367,0.102416152,0.009542731,0.151921384,0.000000000],[0.012944891,0.008540487,0.145167079,0.010476313,0.000000000],[0.009435297,0.170514653,0.001995658,0.208970182,0.000000000],[0.112941808,0.010985606,0.016729665,0.017955727,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair C4 - G20 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
