Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node
BasepairNode | Deletion Probability [0.0000000000030927] | Pair Probability [[0.009192854,0.020706043,0.010085615,0.225768905,0.000000000],[0.016854189,0.009292783,0.192061375,0.011199507,0.000000000],[0.010026535,0.214869253,0.002001534,0.041416213,0.000000000],[0.191480098,0.011785275,0.022529294,0.010730527,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.009799118,0.979911808,0.009799118,0.000489956] | Left Letter Distribution [0.500000000,0.357142857,0.071428571,0.071428571,0.000000000] | Right Length Distribution [0.000000000,0.009799118,0.979911808,0.009799118,0.000489956] | Right Letter Distribution [0.458333333,0.208333333,0.041666667,0.291666667,0.000000000] | Left Index [1] | Right Index [4] // Basepair A2095 - U2650 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.009280432,0.020368229,0.010312873,0.215702181,0.000000000],[0.016772457,0.009285906,0.193782875,0.011767824,0.000000000],[0.010233627,0.226772067,0.002010885,0.036277626,0.000000000],[0.192008674,0.012321377,0.022616385,0.010486579,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair G2097 - C2647 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
