Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [4] // Initial node
BasepairNode | Deletion Probability [0.0000000002643351] | Pair Probability [[0.008631686,0.016437923,0.009848509,0.189184836,0.000000000],[0.017448891,0.008723077,0.266011264,0.012104366,0.000000000],[0.009898469,0.210629286,0.001882854,0.023934598,0.000000000],[0.180847211,0.011941002,0.023214651,0.009261378,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.612007709,0.003236579,0.230209054,0.153884631,0.000632604,0.000029423] | Left Letter Distribution [0.178571429,0.250000000,0.107142857,0.464285714,0.000000000] | Right Length Distribution [0.382167478,0.003821675,0.611541458,0.002351800,0.000117590] | Right Letter Distribution [0.194444444,0.027777778,0.027777778,0.750000000,0.000000000] | Left Index [1] | Right Index [4] // Basepair C3349 - G3356 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.008641799,0.016568117,0.009864960,0.180145637,0.000000000],[0.017321684,0.008717222,0.247681545,0.012081646,0.000000000],[0.009883410,0.228987209,0.001883003,0.022298134,0.000000000],[0.189915970,0.011965123,0.024857566,0.009186974,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [3] // Basepair C3350 - G3353 cWW 
HairpinNode  | Num Bases [1] | Left Index [3] | Right Index [3] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
