Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [8] // Initial node
BasepairNode | Deletion Probability [0.0000115088153469] | Pair Probability [[0.007682320,0.026133847,0.008689026,0.158634876,0.000000000],[0.044312126,0.009379228,0.180587492,0.010109338,0.000000000],[0.008687435,0.240631375,0.001753755,0.048208849,0.000000000],[0.146233858,0.010136286,0.089274448,0.009545740,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.855888435,0.143836523,0.000264855,0.000010187] | Right Letter Distribution [0.785714286,0.071428571,0.071428571,0.071428571,0.000000000] | Left Index [1] | Right Index [8] // Basepair G4 - C25 cWW 
BasepairNode | Deletion Probability [0.0000181219558778] | Pair Probability [[0.013403974,0.155351779,0.139284205,0.020574552,0.000000000],[0.057164216,0.020980079,0.017081266,0.055720192,0.000000000],[0.162933689,0.017726201,0.065347822,0.089048633,0.000000000],[0.016843308,0.037444120,0.030589893,0.100506071,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.941449748,0.058397433,0.000148744,0.000004075] | Left Letter Distribution [0.125000000,0.125000000,0.625000000,0.125000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [7] // Basepair A5 - C24 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.014912692,0.035797027,0.212905716,0.040123374,0.000000000],[0.094914434,0.052460327,0.026156769,0.065107891,0.000000000],[0.210744066,0.025542656,0.012677954,0.015721826,0.000000000],[0.025811485,0.056005737,0.064779661,0.046338385,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [6] // Basepair C6 - A23 cWW 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.007385870,0.013469154,0.008548634,0.155660799,0.000000000],[0.045134987,0.009274620,0.263329698,0.010233458,0.000000000],[0.008605882,0.195005778,0.001705025,0.019258968,0.000000000],[0.153860105,0.010003744,0.090390033,0.008133247,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [4] | Right Index [5] // Basepair C7 - G22 cWW 
HairpinNode  | Num Bases [1] | Left Index [5] | Right Index [5] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
