Character Definition | A,C,G,U,* // Identity and order of characters in matrices
InitialNode  | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.000000000,0.000000000,0.000000000,0.000000000,0.000000000] | Left Index [1] | Right Index [6] // Initial node
BasepairNode | Deletion Probability [0.0000002208070251] | Pair Probability [[0.009990658,0.014058319,0.012326924,0.085261563,0.000000000],[0.195064146,0.020466820,0.119130690,0.014304613,0.000000000],[0.012560326,0.086504518,0.002714401,0.016472914,0.000000000],[0.116583221,0.013302208,0.269651622,0.011607056,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.114812666,0.880026871,0.004916181,0.000244282] | Right Letter Distribution [0.050000000,0.050000000,0.850000000,0.050000000,0.000000000] | Left Index [1] | Right Index [6] // Basepair U2081 - G2239 cWW 
BasepairNode | Deletion Probability [0.0000244705618206] | Pair Probability [[0.105505226,0.106289054,0.209220798,0.117772008,0.000000000],[0.111691501,0.111432869,0.001266520,0.110831278,0.000000000],[0.001266520,0.001266520,0.006191614,0.001266520,0.000000000],[0.005969112,0.001266520,0.107497421,0.001266520,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.997990020,0.001999980,0.000010000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.997990020,0.001999980,0.000010000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [2] | Right Index [5] // Basepair A2082 - G2237 tHS 
BasepairNode | Deletion Probability [0.0000249735224443] | Pair Probability [[0.011575431,0.133731232,0.011595033,0.139320497,0.000000000],[0.015110242,0.010311121,0.120072559,0.012664295,0.000000000],[0.011418277,0.161096143,0.002430837,0.185160248,0.000000000],[0.128300668,0.013357021,0.021286897,0.022569501,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000]] | Left Length Distribution [0.999900000,0.000100000] | Left Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Right Length Distribution [0.999900000,0.000100000] | Right Letter Distribution [0.250000000,0.250000000,0.250000000,0.250000000,0.000000000] | Left Index [3] | Right Index [4] // Basepair G2083 - U2236 cWW 
HairpinNode  | Num Bases [1] | Left Index [4] | Right Index [4] | Norm Constant [1.000000000000000] // Hairpin node type *
Interaction  | Interacting Bases [1,1] | Pair Probability [[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,0.000000000],[0.000000000,0.000000000,0.000000000,0.000000000,1.000000000]] // Hairpin for truncation
