Individual-group diagnostic, all groups
Listing groups by interaction signature
Group  34 is from J4_57327.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_57327.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-F-F-F-F-F-F-F-F-cWW-F-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UAUCGCC*GGCAC*GCUUUCC*GUA (   1) MLPS -14.97 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_57327.1  4V7M U    6 A   66'

 matches the original group, cWW-F-F-F-F-F-F-F-F-cWW-F-cWW-F-F-F
Group  62 is from J4_94519.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_94519.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 AUAG*CAGC*GAAGGUCG*UU (   1) MLPS -12.80 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_94519.1  1QF6 A    7 U   66'

 matches the original group, cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 AUAG*CAGG*CCGUGUCC*GU (   1) MLPS -14.61 deficit   1.81 prct   0.00 CutScore  90.97;  Ed  0, 0
ans =

    ' J4_94519.1  4V90 A    7 U   66'

 matches the original group, cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
Group  38 is from J4_60168.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_60168.1
This group is considered to be structured ***************************
Number of NTs: 20  Signature: cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CAAG*CGAAG*CGAG*CGUUAAG (   1) MLPS -14.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_60168.1  5J7L C  601 G  656'

 matches the original group, cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Better:   0 Equal:   0 Score 1.00 CAAG*CGUAG*CGAGU*GCGUUUAG (   1) MLPS -15.01 deficit   0.73 prct   0.00 CutScore  96.33;  Ed  0, 0
ans =

    ' J4_60168.1  4WF9 C  644 G  701'

 matches the original group, cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Group  45 is from J4_65285.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_65285.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GUGG*CGGC*GCUUUACC*GC (   1) MLPS -15.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_65285.1  2DU3 G  907 C  965'

 matches the original group, cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
Better:   1 Equal:   0 Score 0.00 AUAG*CAUU*AGAGGUCC*GU (   1) MLPS -18.02 deficit   2.21 prct   0.00 CutScore  87.68;  Ed  0, 0
ans =

    ' J4_65285.1  5WWT A    7 U   66'

 scores better against   1 groups: J4_94519.1, 15 NTs, cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW       , Ed  6, 2, MLPS -16.36, deficit  3.55, prct   0.00; 
Group  58 is from J4_80682.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_80682.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UUAAC*GCGC*GAGGUCC*GA (   1) MLPS -15.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_80682.1  3ICQ U    7 A   66'

 matches the original group, cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
Better:   0 Equal:   0 Score 1.00 GUAGU*GCAGC*GCCUUACG*CC (   1) MLPS -17.71 deficit   1.79 prct   0.00 CutScore  90.91;  Ed  0, 0
ans =

    ' J4_80682.1  5X6B G    7 C   65'

 matches the original group, cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
Group   6 is from J4_10408.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_10408.3
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GAUUAG*CAC*GGGGUCG*CAUC (   1) MLPS -14.55 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_10408.3  6OF1 G    5 C   68'

 matches the original group, cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
Better:   0 Equal:   0 Score 1.00 AUAUAG*CGC*GAGGUCG*CUAU (   1) MLPS -15.19 deficit   0.64 prct   0.00 CutScore  96.78;  Ed  0, 0
ans =

    ' J4_10408.3  6GSK A    5 U   68'

 matches the original group, cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
Group  64 is from J4_98739.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_98739.1
This group is considered to be structured ***************************
Number of NTs: 23  Signature: cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CGAG*CGGAG*CGAGU*GGCGGCAUUAG (   1) MLPS -13.87 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_98739.1  7A0S C  611 G  669'

 matches the original group, cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F
Group  18 is from J4_34476.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_34476.1
This group is considered to be structured ***************************
Number of NTs: 21  Signature: cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GACUG*CAUAG*UGAAU*AUUAAC (   1) MLPS -13.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_34476.1  4V9F G 1828 C 2020'

 matches the original group, cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
Better:   0 Equal:   0 Score 1.00 GACUG*CAUAG*UGAUU*AUUAAC (   1) MLPS -13.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_34476.1  5TBW G 2130 C 2322'

 matches the original group, cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
Group  36 is from J4_59634.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_59634.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-F-F-cHS-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UUAGCU*AGCG*UGGGCG*CA (   1) MLPS -13.03 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_59634.1  4V8N U    7 A   68'

 matches the original group, cWW-F-F-F-cHS-F-F-F-F-F-F-F-F
Group   2 is from J4_04237.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_04237.1
This group is considered to be structured ***************************
Number of NTs: 29  Signature: cWW-F-F-F-cWH-F-F-F-F-cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GUGGUGGAAUUGGUAGACACGC*GUG*CUUA*UC (   1) MLPS -21.11 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_04237.1  4WSM G    7 C   77'

 matches the original group, cWW-F-F-F-cWH-F-F-F-F-cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F
Group   7 is from J4_10571.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_10571.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-F-F-F-cWW-F-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     UGG*CAC*GCAGG*UA (   1) MLPS  -9.13 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_10571.1  2ZNI U    7 A   66'

 matches the original group, cWW-F-F-F-cWW-F-F-cWW-F
Group  10 is from J4_16596.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_16596.1
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GGAAAG*CACA*UAC*GAAUGC (   1) MLPS -13.03 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_16596.1  4FRN G   18 C   71'

 matches the original group, cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
Better:   0 Equal:   0 Score 1.00 GGAAAG*CAGA*UAC*GAAUGC (   1) MLPS -13.55 deficit   0.51 prct   0.00 CutScore  97.45;  Ed  0, 0
ans =

    ' J4_16596.1  4FRG G   18 C   73'

 matches the original group, cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
Better:   0 Equal:   0 Score 1.00 GGGAAG*CACG*CAC*GGAAACC (   1) MLPS -17.03 deficit   3.99 prct   0.00 CutScore  80.04;  Ed  0, 0
ans =

    ' J4_16596.1  4GXY G   40 C  161'

 matches the original group, cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
Group  61 is from J4_91882.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_91882.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-F-F-F-cWW-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00  GUGG*CGU*AAGGUUG*UC (   1) MLPS -13.47 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_91882.1  2AKE G    7 C   66'

 scores better against   1 groups: J4_70449.12, 13 NTs, cWW-F-cWW-cWW-cHS-F-cWW-cWW             , Ed  0, 0, MLPS -10.15, deficit  1.75, prct   0.00; 
Better:   0 Equal:   0 Score 1.00  GUAG*CAG*CCUUACG*CC (   1) MLPS -14.89 deficit   1.42 prct   0.00 CutScore  92.64;  Ed  0, 0
ans =

    ' J4_91882.1  2ZZN G    7 C   66'

 matches the original group, cWW-F-F-F-cWW-F-cWW-cWW
Group  55 is from J4_76405.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_76405.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-F-F-F-cWW-F-cWW-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     UCA*UC*GAG*CAAAA (   1) MLPS  -8.42 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_76405.1  2QUS U   11 A   54'

 matches the original group, cWW-F-F-F-cWW-F-cWW-cWW-F
Group  20 is from J4_36296.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_36296.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-F-F-F-cWW-cWW-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   2 Equal:   0 Score 0.00  AUAG*CAG*CGUGUCC*GU (   1) MLPS -12.19 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_36296.1  4YCO A    7 U   66'

 scores better against   2 groups: J4_22413.2, 15 NTs, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F         , Ed  4, 0, MLPS -10.94, deficit  0.19, prct   0.00; J4_70449.12, 13 NTs, cWW-F-cWW-cWW-cHS-F-cWW-cWW             , Ed  0, 0, MLPS -11.58, deficit  3.18, prct   0.00; 
Better:   2 Equal:   0 Score 0.00  GUAG*CAC*GGUGUCG*CC (   1) MLPS -12.20 deficit   0.01 prct   0.00 CutScore  99.95;  Ed  0, 0
ans =

    ' J4_36296.1  3WFS G    7 C   66'

 scores better against   2 groups: J4_70449.12, 13 NTs, cWW-F-cWW-cWW-cHS-F-cWW-cWW             , Ed  2, 0, MLPS -10.59, deficit  2.19, prct   0.00; J4_22413.2, 15 NTs, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F         , Ed  0, 0, MLPS -10.76, deficit  0.00, prct   0.00; 
Better:   2 Equal:   0 Score 0.00  GUAG*CGG*CAGGUCG*CC (   1) MLPS -14.65 deficit   2.46 prct   0.00 CutScore  86.36;  Ed  0, 0
ans =

    ' J4_36296.1  2CSX G    7 C   66'

 scores better against   2 groups: J4_70449.12, 13 NTs, cWW-F-cWW-cWW-cHS-F-cWW-cWW             , Ed  1, 0, MLPS -8.91, deficit  0.51, prct   0.00; J4_91882.1, 12 NTs, cWW-F-F-F-cWW-F-cWW-cWW                 , Ed  5, 2, MLPS -13.78, deficit  0.32, prct   0.00; 
Better:   1 Equal:   0 Score 0.00   UUAA*UAG*UCUAGU*AA (   1) MLPS -14.90 deficit   2.71 prct   0.00 CutScore  84.99;  Ed  0, 0
ans =

    ' J4_36296.1  1B23 U    7 A   66'

 scores better against   1 groups: J4_22413.2, 15 NTs, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F         , Ed  0, 0, MLPS -12.92, deficit  2.17, prct   0.00; 
Better:   0 Equal:   0 Score 1.00  AUCG*CAC*GCAUUCC*GU (   1) MLPS -16.30 deficit   4.11 prct   0.00 CutScore  77.23;  Ed  0, 0
ans =

    ' J4_36296.1  1QTQ A  907 U  966'

 matches the original group, cWW-F-F-F-cWW-cWW-F-cWW
Group  17 is from J4_28473.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_28473.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-F-F-F-cWW-cWW-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     GAAC*GG*CACG*CAC (   1) MLPS  -8.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_28473.1  4V9F G 2679 C 2806'

 matches the original group, cWW-F-F-F-cWW-cWW-F-cWW-F
Group  63 is from J4_97835.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_97835.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-F-F-cWW-cWW-cHS-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UAUAG*CGC*GAGGUCA*UUA (   1) MLPS -13.55 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_97835.1  6ORD U    6 A   67'

 matches the original group, cWW-F-F-F-cWW-cWW-cHS-F-cWW-cWW
Group  33 is from J4_54165.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_54165.1
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GAGU*AAC*GGAACG*CAGC (   1) MLPS -11.54 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_54165.1  7A0S G 2622 C 2751'

 matches the original group, cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F
Group   9 is from J4_12209.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_12209.1
This group is considered to be structured ***************************
Number of NTs: 27  Signature: cWW-F-F-F-cWW-tWH-F-cWW-F-F-F-tWS-tWH-F-F-F-F-F-cSH-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CACAGAGAAGAGAC*GGUGAAACG*CG*CACG (   1) MLPS -14.31 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_12209.1  1U9S C  119 G  222'

 matches the original group, cWW-F-F-F-cWW-tWH-F-cWW-F-F-F-tWS-tWH-F-F-F-F-F-cSH-cWW-F
Group   8 is from J4_11418.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_11418.1
This group is considered to be structured ***************************
Number of NTs: 19  Signature: cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 ACGAAG*CGUG*CAG*CGUACU (   1) MLPS  -9.92 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_11418.1  4V9F A  302 U  349'

 matches the original group, cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Group   4 is from J4_07491.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_07491.1
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-F-F-tWS-F-F-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     AUAAU*AG*CC*GACU (   1) MLPS  -5.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_07491.1  1Y27 A   21 U   75'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     AUAAU*AG*CC*GACU (   1) MLPS  -5.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_07491.1  4LX6 A   21 U   75'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     AUAAU*AG*CC*GACU (   1) MLPS  -5.86 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_07491.1  3LA5 A   21 U   75'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     AUAAC*GG*CC*GACU (   1) MLPS  -6.44 deficit   0.58 prct   0.00 CutScore  96.52;  Ed  0, 0
ans =

    ' J4_07491.1  3IVN A   12 U   66'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     AUAAC*GG*CC*GACU (   1) MLPS  -6.44 deficit   0.58 prct   0.00 CutScore  96.52;  Ed  0, 0
ans =

    ' J4_07491.1  3RKF A   21 U   75'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     AUAAU*AG*CC*GAUU (   1) MLPS  -6.96 deficit   1.10 prct   0.00 CutScore  93.40;  Ed  0, 0
ans =

    ' J4_07491.1  4XNR A   21 U   75'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     AUAAU*AG*CC*GAUU (   1) MLPS  -6.96 deficit   1.10 prct   0.00 CutScore  93.40;  Ed  0, 0
ans =

    ' J4_07491.1  1Y26 A   21 U   75'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     ACAGG*UG*CC*GACU (   1) MLPS  -9.29 deficit   3.43 prct   0.00 CutScore  79.38;  Ed  0, 0
ans =

    ' J4_07491.1  3SKI A   30 U   81'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00     ACAGG*UG*CC*GACU (   1) MLPS  -9.29 deficit   3.43 prct   0.00 CutScore  79.38;  Ed  0, 0
ans =

    ' J4_07491.1  3SKL A   29 U   80'

 matches the original group, cWW-F-F-tWS-F-F-cWW-cWW-cWW
Group  13 is from J4_24220.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_24220.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-F-tWS-F-F-cWW-tHS-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   AUAUAC*GAG*CC*GACU (   1) MLPS  -9.96 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_24220.1  4FEN A   21 U   75'

 matches the original group, cWW-F-F-tWS-F-F-cWW-tHS-cWW-cWW
Group   3 is from J4_04930.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_04930.2
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00  CAAAG*UUGAC*GGG*CGG (   1) MLPS  -7.54 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_04930.2  4WF9 C 2312 G 2410'

 matches the original group, cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
Better:   0 Equal:   0 Score 1.00  CAAAG*UUGAC*GGG*CGG (   1) MLPS  -7.54 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_04930.2  7A0S C 2264 G 2362'

 matches the original group, cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
Better:   0 Equal:   0 Score 1.00  CGAAG*UUGAC*GGU*AGG (   1) MLPS  -8.49 deficit   0.95 prct   0.00 CutScore  95.23;  Ed  0, 0
ans =

    ' J4_04930.2  5J7L C 2285 G 2383'

 matches the original group, cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
Better:   0 Equal:   0 Score 1.00  CAAAG*CUGAC*GGG*CGG (   1) MLPS  -8.79 deficit   1.25 prct   0.00 CutScore  93.73;  Ed  0, 0
ans =

    ' J4_04930.2  4Y4O C 2285 G 2383'

 matches the original group, cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
Better:   0 Equal:   0 Score 1.00  CUAUG*UUGAC*GAC*GUG (   1) MLPS -10.75 deficit   3.21 prct   0.00 CutScore  83.96;  Ed  0, 0
ans =

    ' J4_04930.2  4V9F C 2319 G 2420'

 matches the original group, cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
Better:   0 Equal:   0 Score 1.00  CUAAG*UUGAU*ACC*GUG (   1) MLPS -11.13 deficit   3.59 prct   0.00 CutScore  82.04;  Ed  0, 0
ans =

    ' J4_04930.2  5TBW C 2654 G 2753'

 matches the original group, cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
Group  11 is from J4_19572.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_19572.1
This group is considered to be structured ***************************
Number of NTs: 31  Signature: cWW-F-cSW-F-F-tWH-cWW-F-cHW-F-cWW-F-tWS-F-cWW-F-F-F-cSH-tWH-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CACAGAGAAGAGAC*GGUGAAACG*CGC*GGCACG (   1) MLPS -15.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_19572.1  1U9S C  119 G  222'

 matches the original group, cWW-F-cSW-F-F-tWH-cWW-F-cHW-F-cWW-F-tWS-F-cWW-F-F-F-cSH-tWH-cWW-F-F-F
Group  59 is from J4_89787.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_89787.1
This group is considered to be structured ***************************
Number of NTs: 16  Signature: cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CAGCGAUAG*CG*CUGUC*GG (   1) MLPS -11.84 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_89787.1  4V9F C 1374 G 2051'

 matches the original group, cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
Group  23 is from J4_40439.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_40439.2
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   CAAGAG*CG*CAAUU*AG (   1) MLPS  -8.85 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_40439.2  5FJC C    8 G   86'

 matches the original group, cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
Better:   0 Equal:   0 Score 1.00   CAAGAG*CG*CAAUU*AG (   1) MLPS  -8.85 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_40439.2  4AOB C    8 G   86'

 matches the original group, cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
Better:   0 Equal:   0 Score 1.00   CAAGAG*CA*UAAAU*AG (   1) MLPS  -9.42 deficit   0.57 prct   0.00 CutScore  96.45;  Ed  0, 0
ans =

    ' J4_40439.2  4KQY C    8 G  110'

 matches the original group, cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
Group  16 is from J4_28426.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_28426.1
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-F-cWW-F-F-F-F-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00    CACGAG*CG*UCAC*GG (   1) MLPS  -9.97 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_28426.1  4OQU C    5 G   67'

 matches the original group, cWW-F-cWW-F-F-F-F-F-cWW-cWW
Group  19 is from J4_35578.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_35578.2
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00  GAGUAACG*UC*GUAG*CC (   1) MLPS  -8.26 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_35578.2  4LFB G  115 C  312'

 matches the original group, cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GAGUAACG*UC*GUAG*CC (   1) MLPS  -8.26 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_35578.2  6CZR G  109 C  308'

 matches the original group, cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GAGUAAUG*UG*CUAG*CC (   1) MLPS  -8.82 deficit   0.56 prct   0.00 CutScore  97.18;  Ed  0, 0
ans =

    ' J4_35578.2  5J7L G  115 C  312'

 matches the original group, cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Group  48 is from J4_69568.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_69568.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-F-cWW-F-cWW-F-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   CAAAUAU*AG*UGAU*AG (   1) MLPS -10.60 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_69568.1  5TBW C 1451 G 2353'

 matches the original group, cWW-F-cWW-F-cWW-F-F-cWW
Group  12 is from J4_22413.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_22413.2
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00  GUAG*CAU*AGUGUCC*GC (   1) MLPS -10.75 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_22413.2  2IY5 G    7 C   66'

 matches the original group, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
Better:   1 Equal:   0 Score 0.00  GUAG*CAC*GGUGUCG*CC (   1) MLPS -10.76 deficit   0.00 prct   0.00 CutScore  99.98;  Ed  0, 0
ans =

    ' J4_22413.2  5WT1 G    7 C   66'

 scores better against   1 groups: J4_70449.12, 13 NTs, cWW-F-cWW-cWW-cHS-F-cWW-cWW             , Ed  2, 0, MLPS -10.59, deficit  2.19, prct   0.00; 
Better:   0 Equal:   0 Score 1.00   UUAA*UAG*UCUAGU*AA (   1) MLPS -12.92 deficit   2.17 prct   0.00 CutScore  88.60;  Ed  0, 0
ans =

    ' J4_22413.2  1U0B U    7 A   66'

 matches the original group, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
Group  35 is from J4_57344.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_57344.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-cWW-F-cWW-cSH-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       CUG*CG*CAGC*GG (   1) MLPS  -6.55 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_57344.1  5UD5 C    7 G   66'

 matches the original group, cWW-F-cWW-F-cWW-cSH-cWW
Group  46 is from J4_69051.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_69051.2
This group is considered to be structured ***************************
Number of NTs: 20  Signature: cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GGUUC*GGUUAG*CU*ACCCGUAC (   1) MLPS  -8.36 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_69051.2  4Y4O G 1310 C 1604'

 matches the original group, cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 GGUUC*GGUUAG*CC*GUCCGUAC (   1) MLPS  -9.11 deficit   0.75 prct   0.00 CutScore  96.19;  Ed  0, 0
ans =

    ' J4_69051.2  4V9F G 1416 C 1679'

 matches the original group, cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 GGUUC*GGUUAG*CC*GGUCGUAC (   1) MLPS  -9.70 deficit   1.34 prct   0.00 CutScore  93.22;  Ed  0, 0
ans =

    ' J4_69051.2  5TBW G 1492 C 1836'

 matches the original group, cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 GUUUC*GGUUAG*CC*GCCCGUAC (   1) MLPS  -9.82 deficit   1.46 prct   0.00 CutScore  92.61;  Ed  0, 0
ans =

    ' J4_69051.2  4WF9 G 1347 C 1648'

 matches the original group, cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 GGUUC*GGUGAG*CU*AAUCGUAC (   1) MLPS -10.89 deficit   2.53 prct   0.00 CutScore  87.17;  Ed  0, 0
ans =

    ' J4_69051.2  5J7L G 1310 C 1604'

 matches the original group, cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 GGUUC*GGAAAG*CC*GCCCGUAC (   1) MLPS -10.92 deficit   2.56 prct   0.00 CutScore  87.04;  Ed  0, 0
ans =

    ' J4_69051.2  7A0S G 1323 C 1620'

 matches the original group, cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Group  29 is from J4_47478.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_47478.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-cWW-cWS-cHW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   1 Score 0.50       GAAC*GA*UUG*CC (   1) MLPS  -8.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_47478.1  1KH6 G    5 C   49'

 matches the original group, cWW-F-cWW-cWS-cHW-cWW-cWW
Group  40 is from J4_61885.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_61885.2
This group is considered to be structured ***************************
Number of NTs: 22  Signature: cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GGG*CGAAAG*CCCUAAACGAUG*CC (   1) MLPS -11.41 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_61885.2  4LFB G  575 C  880'

 matches the original group, cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00 GGG*CGAAAG*CCCUAAACGAUG*CC (   1) MLPS -11.41 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_61885.2  6CZR G  559 C  858'

 matches the original group, cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00 GCG*CGAAAG*CCGUAAACGAUG*CC (   1) MLPS -12.44 deficit   1.02 prct   0.00 CutScore  95.91;  Ed  0, 0
ans =

    ' J4_61885.2  5J7L G  575 C  880'

 matches the original group, cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
Better:   0 Equal:   0 Score 1.00 AAG*CGAAAG*CCAUAAACUAUG*UU (   1) MLPS -13.96 deficit   2.55 prct   0.00 CutScore  89.82;  Ed  0, 0
ans =

    ' J4_61885.2  4V88 A  622 U 1104'

 matches the original group, cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
Group  52 is from J4_72305.3 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_72305.3
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-cWW-cWW-cHS-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00     GUGG*UG*CGACA*UC (   1) MLPS -10.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_72305.3  2D6F G  907 C  966'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW
Better:   0 Equal:   0 Score 1.00     CUGG*UG*CGACC*GG (   1) MLPS -10.35 deficit   0.07 prct   0.00 CutScore  99.48;  Ed  0, 0
ans =

    ' J4_72305.3  4QEI C    7 G   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW
Better:   0 Equal:   0 Score 1.00     CUGG*UG*CGACC*GG (   1) MLPS -10.35 deficit   0.07 prct   0.00 CutScore  99.48;  Ed  0, 0
ans =

    ' J4_72305.3  5E6M C    7 G   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW
Better:   0 Equal:   0 Score 1.00     GUCG*CG*UGGUG*CC (   1) MLPS -11.90 deficit   1.62 prct   0.00 CutScore  88.06;  Ed  0, 0
ans =

    ' J4_72305.3  3AL0 G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW
Better:   0 Equal:   0 Score 1.00     GUAG*CA*UGUCG*CC (   1) MLPS -12.86 deficit   2.58 prct   0.00 CutScore  81.01;  Ed  0, 0
ans =

    ' J4_72305.3  5WT1 G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW
Better:   0 Equal:   0 Score 1.00    GUAG*CG*UUGUUG*UC (   1) MLPS -15.66 deficit   5.38 prct   0.00 CutScore  60.40;  Ed  0, 0
ans =

    ' J4_72305.3  6CU1 G   52 C   37'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW
Group  49 is from J4_70449.12 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_70449.12
This group is considered to be structured ***************************
Number of NTs: 13  Signature: cWW-F-cWW-cWW-cHS-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00  GUAG*CGC*GAGGCCG*CC (   1) MLPS  -8.40 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_70449.12  3WQY G 1607 C 1666'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CGU*AAGGUCG*CC (   1) MLPS  -8.61 deficit   0.21 prct   0.00 CutScore  98.85;  Ed  0, 0
ans =

    ' J4_70449.12  7K98 G    7 C   67'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  AUAG*CGC*GAGGUCG*CU (   1) MLPS  -8.83 deficit   0.43 prct   0.00 CutScore  97.63;  Ed  0, 0
ans =

    ' J4_70449.12  6UFM A    7 U   67'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CAC*GGGGUCA*UC (   1) MLPS  -9.01 deficit   0.61 prct   0.00 CutScore  96.68;  Ed  0, 0
ans =

    ' J4_70449.12  4V9K G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CGG*CAGGUCC*GC (   1) MLPS  -9.05 deficit   0.65 prct   0.00 CutScore  96.43;  Ed  0, 0
ans =

    ' J4_70449.12  2ZUE G  907 C  966'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CGC*GAGGUCG*UC (   1) MLPS  -9.07 deficit   0.67 prct   0.00 CutScore  96.36;  Ed  0, 0
ans =

    ' J4_70449.12  1QU2 G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  UUAG*CGC*GAGGUCC*GA (   1) MLPS  -9.08 deficit   0.68 prct   0.00 CutScore  96.27;  Ed  0, 0
ans =

    ' J4_70449.12  5AXM U    7 A   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CAC*GGGGUCG*UC (   1) MLPS  -9.17 deficit   0.77 prct   0.00 CutScore  95.77;  Ed  0, 0
ans =

    ' J4_70449.12  6JXM G    7 C   87'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CAC*GGGGUCG*UC (   1) MLPS  -9.17 deficit   0.77 prct   0.00 CutScore  95.77;  Ed  0, 0
ans =

    ' J4_70449.12  4RDX G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CAC*GGGGUCG*UC (   1) MLPS  -9.17 deficit   0.77 prct   0.00 CutScore  95.77;  Ed  0, 0
ans =

    ' J4_70449.12  4MGN G    7 C   65'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  CUAG*CGC*GAGGUCG*CG (   1) MLPS  -9.19 deficit   0.79 prct   0.00 CutScore  95.70;  Ed  0, 0
ans =

    ' J4_70449.12  1GAX C  907 G  965'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  AUAG*CAU*AGGGUCC*GU (   1) MLPS  -9.24 deficit   0.84 prct   0.00 CutScore  95.41;  Ed  0, 0
ans =

    ' J4_70449.12  7MRL A    7 U   69'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  AUAG*CAU*AGGGUCC*GU (   1) MLPS  -9.24 deficit   0.84 prct   0.00 CutScore  95.41;  Ed  0, 0
ans =

    ' J4_70449.12  1FIR A    7 U   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  AUAG*CAU*AGGGUCC*GU (   1) MLPS  -9.24 deficit   0.84 prct   0.00 CutScore  95.41;  Ed  0, 0
ans =

    ' J4_70449.12  5CCB A    7 U   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGGUCG*CC (   1) MLPS  -9.48 deficit   1.08 prct   0.00 CutScore  94.09;  Ed  0, 0
ans =

    ' J4_70449.12  4V9Q G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGGUCG*CC (   1) MLPS  -9.48 deficit   1.08 prct   0.00 CutScore  94.09;  Ed  0, 0
ans =

    ' J4_70449.12  5E81 G    7 C   67'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGGUCG*CC (   1) MLPS  -9.48 deficit   1.08 prct   0.00 CutScore  94.09;  Ed  0, 0
ans =

    ' J4_70449.12  6CFJ G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGGUCG*CC (   1) MLPS  -9.48 deficit   1.08 prct   0.00 CutScore  94.09;  Ed  0, 0
ans =

    ' J4_70449.12  4WT8 G    7 C   67'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGGUCG*CC (   1) MLPS  -9.48 deficit   1.08 prct   0.00 CutScore  94.09;  Ed  0, 0
ans =

    ' J4_70449.12  4TUE G    6 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  AUAG*CAG*CGGGUCC*GU (   1) MLPS  -9.54 deficit   1.15 prct   0.00 CutScore  93.75;  Ed  0, 0
ans =

    ' J4_70449.12  7LYF A    7 U  129'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  AUAG*CAA*UGGGUCC*GU (   1) MLPS  -9.72 deficit   1.32 prct   0.00 CutScore  92.79;  Ed  0, 0
ans =

    ' J4_70449.12  4WJ4 A    7 U   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGGUUG*UC (   1) MLPS -10.15 deficit   1.75 prct   0.00 CutScore  90.45;  Ed  0, 0
ans =

    ' J4_70449.12  2AZX G  507 C  566'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  UUGG*CAC*GGGGUCG*UA (   1) MLPS -10.54 deficit   2.14 prct   0.00 CutScore  88.32;  Ed  0, 0
ans =

    ' J4_70449.12  6NWY U    7 A   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CGC*GCGGUCG*CC (   1) MLPS -10.56 deficit   2.16 prct   0.00 CutScore  88.20;  Ed  0, 0
ans =

    ' J4_70449.12  3AMU G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CGG*CAUGUCG*CC (   1) MLPS -10.95 deficit   2.55 prct   0.00 CutScore  86.08;  Ed  0, 0
ans =

    ' J4_70449.12  1J1U G  507 C  567'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGAUCG*CC (   1) MLPS -11.04 deficit   2.64 prct   0.00 CutScore  85.61;  Ed  0, 0
ans =

    ' J4_70449.12  5L4O G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGU*AAGAUUC*GC (   1) MLPS -11.23 deficit   2.83 prct   0.00 CutScore  84.57;  Ed  0, 0
ans =

    ' J4_70449.12  1F7U G  907 C  966'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*UAC*GGGGUCG*UC (   1) MLPS -11.25 deficit   2.85 prct   0.00 CutScore  84.44;  Ed  0, 0
ans =

    ' J4_70449.12  6UGG G    6 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CAU*AGUGUCG*UC (   1) MLPS -11.37 deficit   2.97 prct   0.00 CutScore  83.79;  Ed  0, 0
ans =

    ' J4_70449.12  3TUP G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUGG*CGC*GAUGUCC*GC (   1) MLPS -11.50 deficit   3.10 prct   0.00 CutScore  83.09;  Ed  0, 0
ans =

    ' J4_70449.12  1YFG G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   1 Equal:   0 Score 0.00  AUAG*CAG*CGUGUCC*GU (   1) MLPS -11.58 deficit   3.18 prct   0.00 CutScore  82.64;  Ed  0, 0
ans =

    ' J4_70449.12  3FOZ A    7 U   66'

 scores better against   1 groups: J4_22413.2, 15 NTs, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F         , Ed  4, 0, MLPS -10.94, deficit  0.19, prct   0.00; 
Better:   0 Equal:   0 Score 1.00  UUAG*CAG*UUGGUCG*CA (   1) MLPS -11.86 deficit   3.46 prct   0.00 CutScore  81.12;  Ed  0, 0
ans =

    ' J4_70449.12  5E81 U    7 A   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  UUAG*CAG*UUGGUCG*CA (   1) MLPS -11.86 deficit   3.46 prct   0.00 CutScore  81.12;  Ed  0, 0
ans =

    ' J4_70449.12  5EL4 U    7 A   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CAG*UAGGUCG*CC (   1) MLPS -12.19 deficit   3.79 prct   0.00 CutScore  79.32;  Ed  0, 0
ans =

    ' J4_70449.12  3KFU G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*CAC*GGGGGCG*UC (   1) MLPS -12.42 deficit   4.02 prct   0.00 CutScore  78.07;  Ed  0, 0
ans =

    ' J4_70449.12  1H4S G    7 C   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  AUGG*CAG*UUGGUCC*GU (   1) MLPS -12.76 deficit   4.36 prct   0.00 CutScore  76.20;  Ed  0, 0
ans =

    ' J4_70449.12  3EPH A    7 U   66'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00  GUAG*UAC*GCGGUCG*CC (   1) MLPS -13.35 deficit   4.95 prct   0.00 CutScore  72.98;  Ed  0, 0
ans =

    ' J4_70449.12  6GSL G    7 C   67'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00   AUAG*UGG*CAGAUC*GU (   1) MLPS -14.37 deficit   5.97 prct   0.00 CutScore  67.44;  Ed  0, 0
ans =

    ' J4_70449.12  1IL2 A  907 U  966'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00   AUCG*CGC*GAAACG*CU (   1) MLPS -15.48 deficit   7.08 prct   0.00 CutScore  61.36;  Ed  0, 0
ans =

    ' J4_70449.12  1N78 A  507 U  566'

 matches the original group, cWW-F-cWW-cWW-cHS-F-cWW-cWW
Better:   1 Equal:   0 Score 0.00   UUCG*CAC*GUAACA*UA (   1) MLPS -17.52 deficit   9.12 prct   0.00 CutScore  50.24;  Ed  0, 0
ans =

    ' J4_70449.12  2DER U    7 A   66'

 scores better against   1 groups: J4_22413.2, 15 NTs, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F         , Ed  8, 4, MLPS -17.24, deficit  6.49, prct   0.00; 
Better:   1 Equal:   0 Score 0.00   UUCG*CAC*GUAACA*UA (   1) MLPS -17.52 deficit   9.12 prct   0.00 CutScore  50.24;  Ed  0, 0
ans =

    ' J4_70449.12  5HR6 U    6 A   65'

 scores better against   1 groups: J4_22413.2, 15 NTs, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F         , Ed  8, 4, MLPS -17.24, deficit  6.49, prct   0.00; 
Better:   1 Equal:   0 Score 0.00   UUCG*CAC*GUAACA*UA (   1) MLPS -17.52 deficit   9.12 prct   0.00 CutScore  50.24;  Ed  0, 0
ans =

    ' J4_70449.12  5HR7 U    7 A   65'

 scores better against   1 groups: J4_22413.2, 15 NTs, cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F         , Ed  8, 4, MLPS -17.24, deficit  6.49, prct   0.00; 
Group  26 is from J4_45582.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_45582.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-cWW-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       CGA*UG*CGG*CAG (   1) MLPS  -7.87 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_45582.1  4Y1M C   17 G   94'

 matches the original group, cWW-F-cWW-cWW-cWW-cWW
Group  65 is from J4_99897.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_99897.1
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-F-cWW-cWW-cWW-cWW-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00    GUAG*CGC*GUAG*CGC (   1) MLPS  -8.55 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_99897.1  3SUX G    8 C   89'

 matches the original group, cWW-F-cWW-cWW-cWW-cWW-F-cWW
Group  43 is from J4_64571.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_64571.2
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-F-cWW-tSS-cWW-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   CGAUAAA*UC*GCGC*GG (   1) MLPS -10.38 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_64571.2  7A0S C 1283 G 1993'

 matches the original group, cWW-F-cWW-tSS-cWW-F-cWW
Better:   0 Equal:   0 Score 1.00   CGAUAAA*UC*GCGC*GG (   1) MLPS -10.38 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_64571.2  4Y4O C 1270 G 2010'

 matches the original group, cWW-F-cWW-tSS-cWW-F-cWW
Better:   0 Equal:   0 Score 1.00    CGAAAG*CC*GAGC*GG (   1) MLPS -11.33 deficit   0.95 prct   0.00 CutScore  94.22;  Ed  0, 0
ans =

    ' J4_64571.2  4WF9 C 1308 G 2037'

 matches the original group, cWW-F-cWW-tSS-cWW-F-cWW
Better:   0 Equal:   0 Score 1.00   CGAUAAA*UC*GCUU*AG (   1) MLPS -11.33 deficit   0.95 prct   0.00 CutScore  94.21;  Ed  0, 0
ans =

    ' J4_64571.2  5J7L C 1270 G 2010'

 matches the original group, cWW-F-cWW-tSS-cWW-F-cWW
Group  32 is from J4_51403.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_51403.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-cHH-tSH-F-cWW-F-cWW-cSS-cWW-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CUAUG*CGUC*GAG*CGUGUG (   1) MLPS -11.69 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_51403.1  5TBW C  185 G  231'

 matches the original group, cWW-cHH-tSH-F-cWW-F-cWW-cSS-cWW-F-cWW
Group  47 is from J4_69073.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_69073.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-cHS-cWW-cWS-cHW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   1 Score 0.50       GAAC*GA*UUG*CC (   1) MLPS  -8.29 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_69073.1  6U8D G  153 C  239'

 matches the original group, cWW-cHS-cWW-cWS-cHW-cWW-cWW
Group  15 is from J4_26796.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_26796.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-cSH-cWW-F-F-F-tHW-F-cWW-F-F-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CAUUAAAUC*GCC*GUAAC*GG (   1) MLPS -11.87 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_26796.1  4V88 C   99 G  384'

 matches the original group, cWW-cSH-cWW-F-F-F-tHW-F-cWW-F-F-F-cWW
Group  28 is from J4_46448.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_46448.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-cWS-tSH-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       CGU*AA*UG*UUAG (   1) MLPS  -6.85 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_46448.1  6CB3 C   15 G   90'

 matches the original group, cWW-cWS-tSH-cWW-cWW-cWW
Group  21 is from J4_36540.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_36540.1
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-cWW-F-F-F-cWW-F-cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   GG*CGAA*UUGAU*AACC (   1) MLPS -10.17 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_36540.1  3F2X G   32 C   83'

 matches the original group, cWW-cWW-F-F-F-cWW-F-cWW-F-F
Better:   0 Equal:   0 Score 1.00   GG*CGAA*UUGAU*AACC (   1) MLPS -10.17 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_36540.1  6DN2 G   32 C   83'

 matches the original group, cWW-cWW-F-F-F-cWW-F-cWW-F-F
Group  25 is from J4_44058.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_44058.1
This group is considered to be structured ***************************
Number of NTs: 16  Signature: cWW-cWW-F-cWW-F-cWW-cWW-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GGAAA*UGCG*CAC*GGAUAC (   1) MLPS -13.04 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_44058.1  6VMY G  245 C  309'

 matches the original group, cWW-cWW-F-cWW-F-cWW-cWW-F-cWW-F
Group  56 is from J4_77044.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_77044.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-cWW-F-cWW-tHS-cWW-F-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00   GGGC*GAC*GGAAG*CGC (   1) MLPS  -9.77 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_77044.1  4Y4O G 2643 C 2771'

 matches the original group, cWW-cWW-F-cWW-tHS-cWW-F-F-cWW
Better:   0 Equal:   0 Score 1.00   GGGC*GAC*GGAAG*UGC (   1) MLPS -10.02 deficit   0.24 prct   0.00 CutScore  98.71;  Ed  0, 0
ans =

    ' J4_77044.1  5J7L G 2643 C 2771'

 matches the original group, cWW-cWW-F-cWW-tHS-cWW-F-F-cWW
Better:   0 Equal:   0 Score 1.00   GAGC*GAC*GGACG*CCC (   1) MLPS -10.38 deficit   0.60 prct   0.00 CutScore  96.78;  Ed  0, 0
ans =

    ' J4_77044.1  4WF9 G 2670 C 2798'

 matches the original group, cWW-cWW-F-cWW-tHS-cWW-F-F-cWW
Group  60 is from J4_91813.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_91813.1
This group is considered to be structured ***************************
Number of NTs: 15  Signature: cWW-cWW-F-tSH-cWW-F-F-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00  AUG*UU*GGGAG*CGAAGU (   1) MLPS -10.45 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_91813.1  7A0S A 1458 U 1563'

 matches the original group, cWW-cWW-F-tSH-cWW-F-F-F-cWW-F
Group  27 is from J4_45801.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_45801.2
This group is considered to be structured ***************************
Number of NTs: 19  Signature: cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CC*GAGUAC*GGAAUCUG*UAAG (   1) MLPS -11.28 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_45801.2  4WF9 C  271 G  470'

 matches the original group, cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Better:   0 Equal:   0 Score 1.00 CC*GAGUAG*UGAAUAUG*CAAG (   1) MLPS -12.13 deficit   0.85 prct   0.00 CutScore  95.77;  Ed  0, 0
ans =

    ' J4_45801.2  5J7L C  268 G  424'

 matches the original group, cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Better:   0 Equal:   0 Score 1.00 CU*GAGUAC*GGAAUCUG*UAAG (   1) MLPS -12.25 deficit   0.97 prct   0.00 CutScore  95.15;  Ed  0, 0
ans =

    ' J4_45801.2  4Y4O C  268 G  424'

 matches the original group, cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Better:   0 Equal:   0 Score 1.00 CC*GAGUAG*UGAAUCCG*CAAG (   1) MLPS -12.64 deficit   1.36 prct   0.00 CutScore  93.22;  Ed  0, 0
ans =

    ' J4_45801.2  7A0S C  245 G  437'

 matches the original group, cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Better:   0 Equal:   0 Score 1.00 CC*GAGUAG*CGAAUAAC*GAAG (   1) MLPS -12.91 deficit   1.62 prct   0.00 CutScore  91.89;  Ed  0, 0
ans =

    ' J4_45801.2  4V9F C  239 G  431'

 matches the original group, cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Better:   0 Equal:   0 Score 1.00 UC*GAGUCG*CUAAGUG*UAAA (   1) MLPS -16.13 deficit   4.85 prct   0.00 CutScore  75.75;  Ed  0, 0
ans =

    ' J4_45801.2  5TBW U  112 A  319'

 matches the original group, cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Group  44 is from J4_65052.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_65052.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-cWW-cWW-F-cWW-tWS-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00      CUG*CGC*GA*UCUG (   1) MLPS  -8.42 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_65052.1  6N2V C   16 G   86'

 matches the original group, cWW-cWW-cWW-F-cWW-tWS-cWW
Group  31 is from J4_48907.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_48907.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          GC*GG*CG*CC (   1) MLPS  -6.00 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_48907.1  1NBS G   90 C  235'

 matches the original group, cWW-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00          GC*GG*CG*CC (   1) MLPS  -6.00 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_48907.1  1U9S G   79 C  231'

 matches the original group, cWW-cWW-cWW-cWW
Group  57 is from J4_78628.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_78628.1
This group is considered to be structured ***************************
Number of NTs:  8  Signature: cWW-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00          AG*UC*GG*CU (   1) MLPS  -6.82 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_78628.1  5TBW A 1752 U 1694'

 matches the original group, cWW-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00          GG*UU*AC*GC (   1) MLPS  -6.85 deficit   0.02 prct   0.00 CutScore  99.75;  Ed  0, 0
ans =

    ' J4_78628.1  5J7L G 1444 C 1547'

 matches the original group, cWW-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00          GG*CG*CG*UC (   1) MLPS  -7.67 deficit   0.84 prct   0.00 CutScore  91.11;  Ed  0, 0
ans =

    ' J4_78628.1  4V9F G 1627 C 1570'

 matches the original group, cWW-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00         GAC*GC*GG*CC (   1) MLPS  -8.87 deficit   2.05 prct   0.00 CutScore  78.44;  Ed  0, 0
ans =

    ' J4_78628.1  4Y4O G 1444 C 1547'

 matches the original group, cWW-cWW-cWW-cWW
Group  24 is from J4_43687.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_43687.1
This group is considered to be structured ***************************
Number of NTs: 10  Signature: cWW-cWW-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        UG*CUA*UCU*AA (   1) MLPS  -8.60 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_43687.1  7KKV U  526 A  513'

 matches the original group, cWW-cWW-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00       GC*GGC*GACG*CC (   1) MLPS  -9.76 deficit   1.16 prct   0.00 CutScore  87.75;  Ed  0, 0
ans =

    ' J4_43687.1  2A64 G   91 C  245'

 matches the original group, cWW-cWW-cWW-cWW-cWW
Group   5 is from J4_10313.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_10313.2
This group is considered to be structured ***************************
Number of NTs: 16  Signature: cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 UC*GGUUAG*CC*GCCCGUA (   1) MLPS  -8.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_10313.2  4WF9 U 1350 A 1647'

 matches the original group, cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 UC*GGUUAG*CU*ACCCGUA (   1) MLPS  -8.25 deficit   0.05 prct   0.00 CutScore  99.75;  Ed  0, 0
ans =

    ' J4_10313.2  4Y4O U 1313 A 1603'

 matches the original group, cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 UC*GGUUAG*CC*GUCCGUA (   1) MLPS  -9.05 deficit   0.85 prct   0.00 CutScore  95.76;  Ed  0, 0
ans =

    ' J4_10313.2  4V9F U 1419 A 1678'

 matches the original group, cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 UC*GGAAAG*CC*GCCCGUA (   1) MLPS -10.15 deficit   1.95 prct   0.00 CutScore  90.27;  Ed  0, 0
ans =

    ' J4_10313.2  7A0S U 1326 A 1619'

 matches the original group, cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Better:   0 Equal:   0 Score 1.00 UC*GGUGAG*CU*AAUCGUA (   1) MLPS -11.05 deficit   2.84 prct   0.00 CutScore  85.79;  Ed  0, 0
ans =

    ' J4_10313.2  5J7L U 1313 A 1603'

 matches the original group, cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Group  30 is from J4_48692.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_48692.1
This group is considered to be structured ***************************
Number of NTs: 12  Signature: cWW-tHW-F-F-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   1 Equal:   0 Score 0.00     AUAAU*AG*CC*GAUU (   1) MLPS  -7.44 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_48692.1  5SWD A   21 U   75'

 scores better against   1 groups: J4_07491.1, 13 NTs, cWW-F-F-tWS-F-F-cWW-cWW-cWW             , Ed  0, 0, MLPS -6.96, deficit  1.10, prct   0.00; 
Group  50 is from J4_70672.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_70672.1
This group is considered to be structured ***************************
Number of NTs: 24  Signature: cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CGGGGCAG*CGACC*GAC*GGAUGAGAG (   1) MLPS -13.70 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_70672.1  6DN2 C    8 G  105'

 matches the original group, cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
Better:   0 Equal:   0 Score 1.00 CGGGGCAG*CGACC*GAC*GGAUGAGAG (   1) MLPS -13.70 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_70672.1  3F2X C    8 G  105'

 matches the original group, cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
Group  14 is from J4_26776.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_26776.1
This group is considered to be structured ***************************
Number of NTs: 14  Signature: cWW-tSH-F-cWW-cWW-F-tHS-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00    CAG*CGGG*CAA*UGGG (   1) MLPS -10.51 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_26776.1  4RUM C   16 G   88'

 matches the original group, cWW-tSH-F-cWW-cWW-F-tHS-cWW
Group  51 is from J4_71729.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_71729.2
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CGAAG*CGCC*GAG*CGUAG (   1) MLPS  -8.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_71729.2  4Y4O C  297 G  341'

 matches the original group, cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Better:   0 Equal:   0 Score 1.00 CGAAG*CACC*GAA*UGUAG (   1) MLPS  -8.74 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_71729.2  7A0S C  308 G  352'

 matches the original group, cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Better:   0 Equal:   0 Score 1.00 GGAAG*CGCG*CAG*CGUAC (   1) MLPS  -8.94 deficit   0.20 prct   0.00 CutScore  98.94;  Ed  0, 0
ans =

    ' J4_71729.2  5J7L G  297 C  341'

 matches the original group, cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Better:   0 Equal:   0 Score 1.00 CGAAU*AAUC*GAA*UGUAG (   1) MLPS  -9.70 deficit   0.96 prct   0.00 CutScore  94.90;  Ed  0, 0
ans =

    ' J4_71729.2  4WF9 C  340 G  384'

 matches the original group, cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Group  41 is from J4_63076.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_63076.1
This group is considered to be structured ***************************
Number of NTs:  9  Signature: cWW-tSS-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00        AC*GCAG*CC*GU (   1) MLPS  -6.22 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_63076.1  3HHN A   54 U  106'

 matches the original group, cWW-tSS-cWW-cWW-cWW
Better:   0 Equal:   0 Score 1.00        AC*GCAG*CC*GU (   1) MLPS  -6.22 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_63076.1  3IVK A   54 U  106'

 matches the original group, cWW-tSS-cWW-cWW-cWW
Group  54 is from J4_75971.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_75971.1
This group is considered to be structured ***************************
Number of NTs: 11  Signature: cWW-tSS-cWW-cWW-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00       UAA*UC*GCU*AUG (   1) MLPS  -6.77 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_75971.1  5TBW U 3010 G 3136'

 matches the original group, cWW-tSS-cWW-cWW-cWW-cWW
Group  22 is from J4_36568.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_36568.1
This group is considered to be structured ***************************
Number of NTs: 17  Signature: cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GAG*CAUGUG*CAAAG*CGC (   1) MLPS -10.05 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_36568.1  6CZR G  137 C  217'

 matches the original group, cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F
Better:   0 Equal:   0 Score 1.00 GAG*CAUGUG*CAAAG*CGC (   1) MLPS -10.05 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_36568.1  4LFB G  142 C  221'

 matches the original group, cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F
Group  37 is from J4_59845.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_59845.1
This group is considered to be structured ***************************
Number of NTs: 16  Signature: cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 AGU*AG*UACAC*GGUAGGU (   1) MLPS  -9.53 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_59845.1  6DLR A    5 U  104'

 matches the original group, cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F
Better:   0 Equal:   0 Score 1.00 AGU*AG*CACAC*GAUAGGU (   1) MLPS  -9.85 deficit   0.32 prct   0.00 CutScore  98.42;  Ed  0, 0
ans =

    ' J4_59845.1  6CK5 A    5 U  106'

 matches the original group, cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F
Group  39 is from J4_61477.2 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_61477.2
This group is considered to be structured ***************************
Number of NTs: 19  Signature: cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GACUG*CACAG*UGAC*GUAAC (   1) MLPS -11.09 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_61477.2  4WF9 G 1799 C 2006'

 matches the original group, cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Better:   0 Equal:   0 Score 1.00 GACUG*CACAG*UGAC*GUAAC (   1) MLPS -11.09 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_61477.2  7A0S G 1763 C 1962'

 matches the original group, cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Better:   0 Equal:   0 Score 1.00 AACUG*CACAG*UGAC*GUAAU (   1) MLPS -11.19 deficit   0.11 prct   0.00 CutScore  99.49;  Ed  0, 0
ans =

    ' J4_61477.2  5J7L A 1772 U 1979'

 matches the original group, cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Better:   0 Equal:   0 Score 1.00 GACUG*CACAG*CGAC*GUAAC (   1) MLPS -12.18 deficit   1.10 prct   0.00 CutScore  94.71;  Ed  0, 0
ans =

    ' J4_61477.2  4Y4O G 1772 C 1979'

 matches the original group, cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Group  53 is from J4_75852.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_75852.1
This group is considered to be structured ***************************
Number of NTs: 16  Signature: cWW-tSW-cSS-cWW-F-cSH-cWW-cWW-F-F
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00  AGU*AG*UACAC*GCAAGU (   1) MLPS -10.20 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_75852.1  6DME A    4 U   99'

 matches the original group, cWW-tSW-cSS-cWW-F-cSH-cWW-cWW-F-F
Group   1 is from J4_01665.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_01665.1
This group is considered to be structured ***************************
Number of NTs: 18  Signature: cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 GAG*CAUAACG*CCAAAG*UGC (   1) MLPS -11.32 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_01665.1  5J7L G  142 C  221'

 matches the original group, cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Group  42 is from J4_64075.1 which you can see at http://rna.bgsu.edu/rna3dhub/motif/view/J4_64075.1
This group is considered to be structured ***************************
Number of NTs: 20  Signature: cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
100.00% of rows in the alignment have core edit distance 0 from a sequence in 3D
Sequence (multiplicity in alignment) percentile, core edit distance
Better:   0 Equal:   0 Score 1.00 CUG*CG*CCUAAGGUAG*CGAAUG (   1) MLPS -12.19 deficit   0.00 prct   0.00 CutScore 100.00;  Ed  0, 0
ans =

    ' J4_64075.1  5J7L C 1833 G 1972'

 matches the original group, cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
Better:   0 Equal:   0 Score 1.00 CUG*CG*CUUAAGGUAG*UGAAUG (   1) MLPS -12.87 deficit   0.68 prct   0.00 CutScore  96.58;  Ed  0, 0
ans =

    ' J4_64075.1  5TBW C 2192 G 2315'

 matches the original group, cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
Better:   0 Equal:   0 Score 1.00 CUG*CG*CUUAAGGUAG*UGAAUG (   1) MLPS -12.87 deficit   0.68 prct   0.00 CutScore  96.58;  Ed  0, 0
ans =

    ' J4_64075.1  4V9F C 1889 G 2013'

 matches the original group, cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
Better:   0 Equal:   0 Score 1.00 UUG*CG*CCUAAGGUAG*CGAAAA (   1) MLPS -13.61 deficit   1.42 prct   0.00 CutScore  92.88;  Ed  0, 0
ans =

    ' J4_64075.1  4Y4O U 1833 A 1972'

 matches the original group, cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
Sequence    9 in group J4_07491.1 with cutoff score    93.4029 does better against group J4_48692.1 cutoff score   100.0000; AUAAU*AG*CC*GAUU
Sequence   10 in group J4_07491.1 with cutoff score    93.4029 does better against group J4_48692.1 cutoff score   100.0000; AUAAU*AG*CC*GAUU
Sequence   45 in group J4_36296.1 with cutoff score    86.3586 does better against group J4_70449.12 cutoff score    97.1922; GUAG*CGG*CAGGUCG*CC
Sequence   46 in group J4_36296.1 with cutoff score    99.9503 does better against group J4_22413.2 cutoff score    99.9794; GUAG*CAC*GGUGUCG*CC
Sequence   49 in group J4_36296.1 with cutoff score    84.9888 does better against group J4_22413.2 cutoff score    88.6037; UUAA*UAG*UCUAGU*AA
Sequence  118 in group J4_70449.12 with cutoff score    83.7857 does better against group J4_22413.2 cutoff score    88.6246; GUAG*CAU*AGUGUCG*UC
Sequence  118 in group J4_70449.12 with cutoff score    83.7857 does better against group J4_36296.1 cutoff score    86.9907; GUAG*CAU*AGUGUCG*UC
Sequence  123 in group J4_70449.12 with cutoff score    90.4492 does better against group J4_91882.1 cutoff score   100.0000; GUGG*CGU*AAGGUUG*UC
Sequence  149 in group J4_70449.12 with cutoff score    82.6431 does better against group J4_22413.2 cutoff score    99.0248; AUAG*CAG*CGUGUCC*GU
Sequence  149 in group J4_70449.12 with cutoff score    82.6431 does better against group J4_36296.1 cutoff score   100.0000; AUAG*CAG*CGUGUCC*GU
Sequence  173 in group J4_78628.1 with cutoff score    91.1122 does better against group J4_78628.1 cutoff score    99.4380; GG*CG*CG*UC
