Motifs in release J4\3.48

There are 65 motif groups, of which 57 are structured
RNA 3D hub site for this release
J4_01665.1 1 instances 18 conserved NTs Model Interactions Alignment cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
J4_04237.1 1 instances 29 conserved NTs Model Interactions Alignment cWW-F-F-F-cWH-F-F-F-F-cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F
J4_04930.2 6 instances 15 conserved NTs Model Interactions Alignment cWW-F-F-tWW-cWW-cWW-cHW-cWW-F
J4_07491.1 9 instances 13 conserved NTs Model Interactions Alignment cWW-F-F-tWS-F-F-cWW-cWW-cWW
J4_10313.2 5 instances 16 conserved NTs Model Interactions Alignment cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
J4_10408.3 2 instances 15 conserved NTs Model Interactions Alignment cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
J4_10571.1 1 instances 12 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-F-F-cWW-F
J4_11418.1 1 instances 19 conserved NTs Model Interactions Alignment cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
J4_12209.1 1 instances 27 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-tWH-F-cWW-F-F-F-tWS-tWH-F-F-F-F-F-cSH-cWW-F
J4_16596.1 3 instances 17 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F
J4_19572.1 1 instances 31 conserved NTs Model Interactions Alignment cWW-F-cSW-F-F-tWH-cWW-F-cHW-F-cWW-F-tWS-F-cWW-F-F-F-cSH-tWH-cWW-F-F-F
J4_22413.2 3 instances 15 conserved NTs Model Interactions Alignment cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
J4_24220.1 1 instances 15 conserved NTs Model Interactions Alignment cWW-F-F-tWS-F-F-cWW-tHS-cWW-cWW
J4_26776.1 1 instances 14 conserved NTs Model Interactions Alignment cWW-tSH-F-cWW-cWW-F-tHS-cWW
J4_26796.1 1 instances 18 conserved NTs Model Interactions Alignment cWW-cSH-cWW-F-F-F-tHW-F-cWW-F-F-F-cWW
J4_28426.1 1 instances 14 conserved NTs Model Interactions Alignment cWW-F-cWW-F-F-F-F-F-cWW-cWW
J4_28473.1 1 instances 13 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-cWW-F-cWW-F
J4_34476.1 2 instances 21 conserved NTs Model Interactions Alignment cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
J4_35578.2 3 instances 15 conserved NTs Model Interactions Alignment cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
J4_36296.1 5 instances 12 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-cWW-F-cWW
J4_36540.1 2 instances 14 conserved NTs Model Interactions Alignment cWW-cWW-F-F-F-cWW-F-cWW-F-F
J4_36568.1 2 instances 17 conserved NTs Model Interactions Alignment cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F
J4_40439.2 3 instances 15 conserved NTs Model Interactions Alignment cWW-F-cWW-F-F-F-F-F-cWW-F-cWW
J4_43687.1 2 instances 10 conserved NTs Model Interactions Alignment cWW-cWW-cWW-cWW-cWW
J4_44058.1 1 instances 16 conserved NTs Model Interactions Alignment cWW-cWW-F-cWW-F-cWW-cWW-F-cWW-F
J4_45582.1 1 instances 11 conserved NTs Model Interactions Alignment cWW-F-cWW-cWW-cWW-cWW
J4_45801.2 6 instances 19 conserved NTs Model Interactions Alignment cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
J4_46448.1 1 instances 11 conserved NTs Model Interactions Alignment cWW-cWS-tSH-cWW-cWW-cWW
J4_47478.1 1 instances 11 conserved NTs Model Interactions Alignment cWW-F-cWW-cWS-cHW-cWW-cWW
J4_48692.1 1 instances 12 conserved NTs Model Interactions Alignment cWW-tHW-F-F-cWW-cWW-cWW
J4_48907.1 2 instances 8 conserved NTs Model Interactions Alignment cWW-cWW-cWW-cWW
J4_51403.1 1 instances 18 conserved NTs Model Interactions Alignment cWW-cHH-tSH-F-cWW-F-cWW-cSS-cWW-F-cWW
J4_54165.1 1 instances 17 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F
J4_57327.1 1 instances 18 conserved NTs Model Interactions Alignment cWW-F-F-F-F-F-F-F-F-cWW-F-cWW-F-F-F
J4_57344.1 1 instances 11 conserved NTs Model Interactions Alignment cWW-F-cWW-F-cWW-cSH-cWW
J4_59634.1 1 instances 15 conserved NTs Model Interactions Alignment cWW-F-F-F-cHS-F-F-F-F-F-F-F-F
J4_59845.1 2 instances 16 conserved NTs Model Interactions Alignment cWW-tSW-F-cWW-F-F-cWW-F-F-cWW-F-F
J4_60168.1 2 instances 20 conserved NTs Model Interactions Alignment cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
J4_61477.2 4 instances 19 conserved NTs Model Interactions Alignment cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
J4_61885.2 4 instances 22 conserved NTs Model Interactions Alignment cWW-F-cWW-cWW-F-F-F-tHW-F-F-F-F-F-cWW-F-F-F
J4_63076.1 2 instances 9 conserved NTs Model Interactions Alignment cWW-tSS-cWW-cWW-cWW
J4_64075.1 4 instances 20 conserved NTs Model Interactions Alignment cWW-tWW-cWW-F-F-cHW-F-cWW-tSS-cSS-cSH-tWH-tHS-cWW
J4_64571.2 4 instances 11 conserved NTs Model Interactions Alignment cWW-F-cWW-tSS-cWW-F-cWW
J4_65052.1 1 instances 12 conserved NTs Model Interactions Alignment cWW-cWW-cWW-F-cWW-tWS-cWW
J4_65285.1 2 instances 13 conserved NTs Model Interactions Alignment cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
J4_69051.2 6 instances 20 conserved NTs Model Interactions Alignment cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
J4_69073.1 1 instances 11 conserved NTs Model Interactions Alignment cWW-cHS-cWW-cWS-cHW-cWW-cWW
J4_69568.1 1 instances 12 conserved NTs Model Interactions Alignment cWW-F-cWW-F-cWW-F-F-cWW
J4_70449.12 42 instances 13 conserved NTs Model Interactions Alignment cWW-F-cWW-cWW-cHS-F-cWW-cWW
J4_70672.1 2 instances 24 conserved NTs Model Interactions Alignment cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
J4_71729.2 4 instances 17 conserved NTs Model Interactions Alignment cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
J4_72305.3 6 instances 11 conserved NTs Model Interactions Alignment cWW-F-cWW-cWW-cHS-F-cWW
J4_75852.1 1 instances 16 conserved NTs Model Interactions Alignment cWW-tSW-cSS-cWW-F-cSH-cWW-cWW-F-F
J4_75971.1 1 instances 11 conserved NTs Model Interactions Alignment cWW-tSS-cWW-cWW-cWW-cWW
J4_76405.1 1 instances 13 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-F-cWW-cWW-F
J4_77044.1 3 instances 15 conserved NTs Model Interactions Alignment cWW-cWW-F-cWW-tHS-cWW-F-F-cWW
J4_78628.1 4 instances 8 conserved NTs Model Interactions Alignment cWW-cWW-cWW-cWW
J4_80682.1 2 instances 18 conserved NTs Model Interactions Alignment cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
J4_89787.1 1 instances 16 conserved NTs Model Interactions Alignment cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
J4_91813.1 1 instances 15 conserved NTs Model Interactions Alignment cWW-cWW-F-tSH-cWW-F-F-F-cWW-F
J4_91882.1 2 instances 12 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-F-cWW-cWW
J4_94519.1 2 instances 15 conserved NTs Model Interactions Alignment cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
J4_97835.1 1 instances 15 conserved NTs Model Interactions Alignment cWW-F-F-F-cWW-cWW-cHS-F-cWW-cWW
J4_98739.1 1 instances 23 conserved NTs Model Interactions Alignment cWW-F-F-F-F-cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F
J4_99897.1 1 instances 14 conserved NTs Model Interactions Alignment cWW-F-cWW-cWW-cWW-cWW-F-cWW