RNA2D.js is a tool to visualize and interact with RNA Secondary structures. It is meant to create the standard airport diagrams and provide a way to interact with them. Currently, we can easily integrate the 2D visualization with the 3D visualization provided by jmolTools.More details
In the default select mode, click and drag to create a selection box. All nucleotides within the selection box will be displayed in a jmol window to the right.
The selection box is dragable and resizeable. Click inside and drag to move it. Click on the border and drag to resize it.
In click mode, click on a interaction to display the interaction in 3D. To switch to the click mode use the selection mode control.
Interactions are displayed as black bars connecting nucleotides, by default only cWW interactions are displayed. To display other interactions use the interaction controls.