Structural Databases

RNA 3D Hub is a new resource, which contains:

RNA 3D Motif Atlas, a representative collection of RNA 3D motifs.

Non-redundant lists of RNA-containing 3D structures.

Structural annotations for all atomic-resolution RNA 3D structures deposited in PDB/NDB, including FR3D basepairing and base-stacking annotations and internal, hairpin, and 3-way junction loops.

Motifs NR lists Structure Atlas

Web Applications

R3D Align is a web application for detailed global nucleotide to nucleotide pairwise alignments of RNA 3D structures.

WebFR3D is the online version of FR3D, a program for symbolic and geometric searching of RNA 3D structures.

New! JAR3D is an application for predicting RNA 3D motifs in sequences and sequence alignments.

WebFR3D JAR3D R3D Align