PDBID | FR3D analysis | NTs | Pairs | Res | Date | Organism | Description provided by author | Author | Also represents |
1S72 | FR3D | 2871 | 1376 | 2.4 | 6-15-04 | HALOARCULA MARISMORTUI | REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION | D.J.KLEIN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ | 3CMA 3CCJ 3G4S 1N8R 1VQK 2QEX 1VQ4 1NJI 3CCS 1K9M 3CCL 1VQO 1YHQ 1VQ6 1VQM 2OTL 1FFZ 1Q86 1JJ2 3CCQ 1M90 3CD6 1VQ8 2QA4 3CCV 1KC8 1FG0 1YJ9 3CPW 1Q7Y 1K73 1Q82 1QVF 1YIJ 3I55 3CC7 1FFK 3CCR 1YJW 1M1K 1Q81 3CXC 1VQL 1VQ5 1KQS 3CCE 2OTJ 1K8A 1W2B 3CCM 1VQ7 3CC2 1VQ9 1KD1 1QVG 1YI2 3I56 1VQP 3CC4 3G71 1YIT 3G6E 3CME 3CCU 1VQN 1YJN |
2VQE | FR3D | 1522 | 681 | 2.5 | 4-29-08 | THERMUS THERMOPHILUS | MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING | S.KURATA,A.WEIXLBAUMER,T.OHTSUKI,T.SHIMAZAKI,T.WADA, Y.KIRINO,K.TAKAI,K.WATANABE,V.RAMAKRISHNAN,T.SUZUKI | 3KNN 2UUC 3PYQ 2WH3 2ZM6 2HGP 2Y10 2WH1 1FJG 2UXC 1HR0 1XNR 2Y0Y 2XQD 3KIX 1I96 2UUA 2X9R 3F1G 1N32 3FIC 1S1H 2J00 3PYU 2X9T 3HUW 2WRI 2OW8 1FKA 3PYN 3I8G 2XUY 3OI0 2V46 2WRN 3KIS 3KNL 3OHD 2XSY 1I95 1IBL 3D5A 2WRK 3OTO 2Y12 3OI4 2HGR 1N34 3HUY 3OI2 2HGI 2WDG 1PNX 3OGY 1XNQ 2XG1 1YL4 2B9O 2UUB 2HHH 2VQF 1VOS 2Y14 3KNH 1HNW 1HNZ 2Y16 2WDK 3D5C 2J02 3KIQ 3OHC 3I9D 2Y18 2F4V 3KNJ 1N36 3MR8 3OHY 3MS0 1XMO 1I97 2Y0U 2QNH 3I8H 3OGE 2V48 1XMQ 1I94 1VOX 2UXB 1IBK 1VOV 3I9B 2B64 3KIU 1N33 3F1E 2WDM 1J5E 2WRQ 1HNX 2UXD 2E5L 3PYS 2B9M 2WDH 1VOZ 2XFZ 2Y0W 2UU9 1IBM 1VOQ 1PNS |
3DIL | FR3D | 173 | 81 | 1.9 | 9-16-08 | synthetic | CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE | A.A.SERGANOV | 3DIS 3DIQ 3DIZ 3DJ2 3DIX 3DIM 3DIR 3DIO 3DIG 3DJ0 3DIY |
3PDR | FR3D | 322 | 148 | 1.9 | 2-23-11 | BACILLUS SUBTILIS | CRYSTAL STRUCTURE OF MANGANESE BOUND M-BOX RNA | A RAMESH,W.C.WINKLER | 2QBZ |
1GID | FR3D | 316 | 153 | 2.5 | 12-31-96 | SYNTHETIC CONSTRUCT | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | J.H.CATE,A.R.GOODING,E.PODELL,K.ZHOU,B.L.GOLDEN,C.E.KUNDROT, T.R.CECH,J.A.DOUDNA | 1HR2 1L8V 2R8S |
2NZ4 | FR3D | 594 | 238 | 2.5 | 1-16-07 | synthetic | STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS CATALYTIC COFACTOR | J.C.COCHRANE | 3G8S 3G9C 3L3C 3G96 3G8T |
2Z75 | FR3D | 140 | 62 | 1.7 | 9-04-07 | synthetic | T. TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSAMINE-6- PHOSPHATE | D.J.KLEIN,S.R.WILKINSON,M.D.BEEN,A.R.FERRE-D'AMARE | 3B4C 2HO7 2Z74 3B4A 2H0Z 2H0S 2H0X 3B4B 2GCV 2HO6 2GCS 2H0W |
1LNG | FR3D | 97 | 44 | 2.3 | 6-07-02 | METHANOCALDOCOCCUS JANNASCHII | CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII | T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON | 1Z43 2V3C |
3GX5 | FR3D | 94 | 43 | 2.4 | 1-12-10 | synthetic | CRYSTAL STRUCTURE OF T. TENCONGENSIS SAM-I RIBOSWITCH VARIANT A94G/U34 BOUND WITH SAM | R.K.MONTANGE,R.T.BATEY | 3GX6 3IQN 3GX3 3IQR 3GX2 3IQP 2GIS 3GX7 |
1M5O | FR3D | 224 | 94 | 2.2 | 10-12-02 | synthetic | TRANSITION STATE STABILIZATION BY A CATALYTIC RNA | P.B.RUPERT,A.P.MASSEY,S.T.SIGURDSSON,A.R.FERRE-D'AMARE | 1M5P 1M5V 1M5K |
3MXH | FR3D | 91 | 37 | 2.3 | 8-25-10 | synthetic | NATIVE STRUCTURE OF A C-DI-GMP RIBOSWITCH FROM V. CHOLERAE | S.A.STROBEL,K.D.SMITH | 3MUR 3MUT 3MUM 3IRW 3MUV |
3ADD | FR3D | 176 | 73 | 2.4 | 7-28-10 | METHANOPYRUS KANDLERI | CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 3) | Y.ITOH,S.CHIBA,S.SEKINE,S.YOKOYAMA | 3ADB |
3AM1 | FR3D | 81 | 34 | 2.4 | 12-29-10 | synthetic | CRYSTAL STRUCTURE OF PROTEIN | Y.ARAISO,R.ISHITANI,O.NUREKI | |
2GDI | FR3D | 156 | 74 | 2.0 | 7-04-06 | synthetic | CRYSTAL STRUCTURE OF THIAMINE PYROPHOSPHATE-SPECIFIC RIBOSWITCH IN COMPLEX WITH THIAMINE PYROPHOSPHATE | A.SERGANOV | |
3D2V | FR3D | 154 | 71 | 2.0 | 7-01-08 | ARABIDOPSIS THALIANA | STRUCTURE OF THE EUKARYOTIC TPP-SPECIFIC RIBOSWITCH BOUND TO THE ANTIBACTERIAL COMPOUND PYRITHIAMINE PYROPHOSPHATE | S.THORE,C.FRICK,N.BAN | 2CKY 3D2X 3D2G |
2CV1 | FR3D | 150 | 65 | 2.4 | 9-05-06 | synthetic | GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU), ATP, AND AN ANALOG OF L-GLUTAMATE: A QUATERNARY COMPLEX | S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) | 2CV2 1G59 1N77 2DXI 1N78 2CV0 |
2ZUE | FR3D | 75 | 29 | 2.0 | 8-18-09 | synthetic | CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG) AND AN ATP ANALOG (ANP) | M.KONNO,T.SUMIDA,E.UCHIKAWA,Y.MORI,T.YANAGISAWA,S.SEKINE, S.YOKOYAMA | 2ZUF |
1QU2 | FR3D | 75 | 31 | 2.2 | 8-31-99 | STAPHYLOCOCCUS AUREUS | INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN | L.F.SILVIAN,J.WANG,T.A.STEITZ | 1QU3 1FFY |
1VC7 | FR3D | 74 | 30 | 2.5 | 5-18-04 | synthetic | CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN SR2+ SOLUTION | A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA | 1SJ4 1SJ3 1VC0 1SJF 1DRZ 1VC6 2OIH 1VBZ 2OJ3 1VC5 1VBX 1CX0 1VBY |
1J1U | FR3D | 74 | 31 | 1.9 | 6-03-03 | synthetic | CRYSTAL STRUCTURE OF ARCHAEAL TYROSYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(TYR) AND L-TYROSINE | T.KOBAYASHI,O.NUREKI,R.ISHITANI,M.TUKALO,S.CUSACK, K.SAKAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) | |
1QTQ | FR3D | 74 | 30 | 2.2 | 5-27-98 | ESCHERICHIA COLI | GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG | V.L.RATH,L.F.SILVIAN,B.BEIJER,B.S.SPROAT,T.A.STEITZ | 1EUQ 1EUY 1QRS 1GTS 1O0C 1QRU 2RE8 1ZJW 1GTR 1O0B 1QRT 1EXD 2RD2 |
3FOZ | FR3D | 143 | 58 | 2.5 | 1-20-09 | synthetic | STRUCTURE OF E. COLI ISOPENTENYL-TRNA TRANSFERASE IN COMPLEX WITH E. COLI TRNA(PHE) | E.SEIF,B.M.HALLBERG | 2ZXU 2ZM5 |
1U0B | FR3D | 74 | 30 | 2.3 | 11-23-04 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF CYSTEINYL-TRNA SYNTHETASE BINARY COMPLEX WITH TRNACYS | S.HAUENSTEIN,C.M.ZHANG,Y.M.HOU,J.J.PERONA | |
2HOJ | FR3D | 74 | 33 | 2.5 | 9-19-06 | synthetic | CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO THIAMINE PYROPHOSPHATE, MANGANESE IONS | T.E.EDWARDS,A.R.FERRE-D'AMARE | 2HOK 2HOO 2HOM 2HOL |
1Y26 | FR3D | 71 | 35 | 2.1 | 12-28-04 | VIBRIO VULNIFICUS | A-RIBOSWITCH-ADENINE COMPLEX | A.SERGANOV,Y.R.YUAN,D.J.PATEL | |
3LA5 | FR3D | 71 | 35 | 1.7 | 1-26-10 | BACILLUS SUBTILIS | X-RAY CRYSTAL STRUCTURE OF MC6 RNA RIBOSWITCH BOUND TO AZACYTOSINE | M.S.DUNSTAN,D.LEYS | |
1C0A | FR3D | 68 | 25 | 2.4 | 11-23-99 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX | S.EILER,A.-C.DOCK-BREGEON,L.MOULINIER,J.-C.THIERRY,D.MORAS | |
2QUS | FR3D | 136 | 48 | 2.4 | 7-15-08 | synthetic | HAMMERHEAD RIBOZYME G12A MUTANT PRE-CLEAVAGE | Y.I.CHI,W.G.SCOTT,S.H.KIM | |
3FO4 | FR3D | 63 | 32 | 1.9 | 6-23-09 | synthetic | CRYSTAL STRUCTURE OF GUANINE RIBOSWITCH C74U MUTANT BOUND TO 6-CHLOROGUANINE | S.D.GILBERT,R.T.BATEY | 3GAO 2EES 2G9C 2EEW 3FO6 2B57 3GOT 3GES 1Y27 2EEU 3DS7 2EET 3GOG 1U8D 2EEV 3G4M 3GER |
3NKB | FR3D | 70 | 31 | 1.9 | 9-01-10 | HOMO SAPIENS | A 1.9A CRYSTAL STRUCTURE OF THE HDV RIBOZYME PRECLEAVAGE SUGGESTS BOTH LEWIS ACID AND GENERAL ACID MECHANISMS CONTRIBUTE TO PHOSPHODIESTER CLEAVAGE | J.-H.CHEN,R.YAJIMA,D.M.CHADALAVADA,E.CHASE,P.C.BEVILACQUA,B.L.GOLDEN | |
3EGZ | FR3D | 64 | 20 | 2.2 | 10-28-08 | synthetic | CRYSTAL STRUCTURE OF AN IN VITRO EVOLVED TETRACYCLINE APTAMER AND ARTIFICIAL RIBOSWITCH | H.XIAO,T.E.EDWARDS,A.R.FERRE-D'AMARE | |
1F7U | FR3D | 63 | 22 | 2.2 | 6-27-01 | synthetic | CRYSTAL STRUCTURE OF THE ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNA(ARG) AND L-ARG | B.DELAGOUTTE,D.MORAS,J.CAVARELLI | 1F7V |
1EHZ | FR3D | 62 | 23 | 1.9 | 10-02-00 | synthetic | THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA AT 1.93 A RESOLUTION | H.SHI,P.B.MOORE | 1SZ1 1TRA 1TTT 1ML5 1OB2 1MJ1 1FCW 1TN2 4TRA 6TNA 4TNA 1EVV 1OB5 |
3HJW | FR3D | 70 | 30 | 2.4 | 6-23-09 | synthetic | STRUCTURE OF A FUNCTIONAL RIBONUCLEOPROTEIN PSEUDOURIDINE SYNTHASE BOUND TO A SUBSTRATE RNA | B.LIANG,J.ZHOU,E.KAHEN,R.M.TERNS,M.P.TERNS,H.LI | 3LWR 3LWV 3LWQ 3LWP 3LWO |
3HAX | FR3D | 71 | 31 | 2.1 | 6-23-09 | synthetic | CRYSTAL STRUCTURE OF A SUBSTRATE-BOUND GAR1-MINUS H/ACA RNP FROM PYROCOCCUS FURIOSUS | K.YE | |
2QUW | FR3D | 134 | 49 | 2.2 | 7-15-08 | synthetic | HAMMERHEAD RIBOZYME G12A MUTANT AFTER CLEAVAGE | Y.I.CHI,W.G.SCOTT,S.H.KIM | |
2HVY | FR3D | 57 | 20 | 2.3 | 9-12-06 | synthetic | CRYSTAL STRUCTURE OF AN H/ACA BOX RNP FROM PYROCOCCUS FURIOSUS | K.YE | |
2DLC | FR3D | 57 | 20 | 2.4 | 6-12-07 | SACCHAROMYCES CEREVISIAE | CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF YEAST TYROSYL- TRNA SYNTHETASE | M.TSUNODA,Y.KUSAKABE,N.TANAKA,K.T.NAKAMURA | |
3E5C | FR3D | 52 | 21 | 2.2 | 10-07-08 | synthetic | CRYSTAL STRUCTURE OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SAM | C.LU | 3E5E 3E5F |
3NPQ | FR3D | 150 | 53 | 2.2 | 10-06-10 | RALSTONIA SOLANACEARUM | STRUCTURE OF THE S-ADENOSYLHOMOCYSTEINE RIBOSWITCH AT 2.18 A | F.E.REYES,A.E.EDWARDS,R.T.BATEY | 3NPN |
2PXV | FR3D | 49 | 22 | 2.0 | 8-07-07 | synthetic | VARIANT 6 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE | A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT | 2PXF 2PXB 2PXK 1DUL 2PXD 2PXT 2PXU 2PXP 3LQX 2PXE 2PXQ 2PXL 1HQ1 |
2VPL | FR3D | 94 | 38 | 2.3 | 9-23-08 | METHANOCALDOCOCCUS JANNASCHII | THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII | V.KLJASHTORNY,S.TISHCHENKO,N.NEVSKAYA,S.NIKONOV,M.GARBER | |
2OEU | FR3D | 59 | 24 | 2.0 | 2-20-07 | synthetic | FULL-LENGTH HAMMERHEAD RIBOZYME WITH MN(II) BOUND | M.MARTICK,W.G.SCOTT | 2GOZ |
3P22 | FR3D | 190 | 104 | 2.5 | 12-08-10 | synthetic | CRYSTAL STRUCTURE OF THE ENE, A VIRAL RNA STABILITY ELEMENT, IN COMPLEX WITH A9 RNA | R.M.MITTON-FRY,S.J.DEGREGORIO,J.WANG,T.A.STEITZ,J.A.STEITZ | |
2ZY6 | FR3D | 38 | 12 | 1.8 | 6-30-09 | synthetic | CRYSTAL STRUCTURE OF A TRUNCATED TRNA, TPHE39A | I.TANAKA,M.YAO,Y.TANAKA,Y.KITAGO,S.YMAGATA | |
2HW8 | FR3D | 36 | 17 | 2.1 | 12-19-06 | synthetic | STRUCTURE OF RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 RESOLUTION. | S.TISHCHENKO,E.NIKONOVA,A.NIKULIN,N.NEVSKAYA,S.VOLCHKOV, W.PIENDL,M.GARBER,S.NIKONOV | 1ZHO |
3OVA | FR3D | 34 | 13 | 2.0 | 12-01-10 | synthetic | HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE IN POSITION 76 OF TRNA | B.C.PAN,Y.XIONG,T.A.STEITZ | 3OUY 3OVB 3OV7 3OVS |
1ET4 | FR3D | 175 | 75 | 2.3 | 11-13-00 | synthetic | CRYSTAL STRUCTURE OF A VITAMIN B12 BINDING RNA APTAMER WITH LIGAND AT 2.3 A | D.SUSSMAN,C.WILSON | 1DDY |
2DR8 | FR3D | 33 | 13 | 2.5 | 11-14-06 | synthetic | COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDC AND CTP | K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI | 2DRB 2ZH5 1VFG 2ZH3 2ZH1 2DR5 2ZHA 2ZH7 2DVI 2DR9 2ZH4 2ZHB 2ZH9 2ZH2 2ZH8 2DR7 2ZH6 2DRA |
1MJI | FR3D | 68 | 28 | 2.5 | 1-21-03 | ESCHERICHIA COLI | DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX | A.PEREDERINA,N.NEVSKAYA,O.NIKONOV,A.NIKULIN,P.DUMAS,M.YAO, I.TANAKA,M.GARBER,G.GONGADZE,S.NIKONOV | |
1JBR | FR3D | 61 | 26 | 2.1 | 10-26-01 | synthetic | CRYSTAL STRUCTURE OF THE RIBOTOXIN RESTRICTOCIN AND A 31- MER SRD RNA INHIBITOR | X.YANG,T.GERCZEI,L.GLOVER,C.C.CORRELL | 1JBT |
2BH2 | FR3D | 29 | 5 | 2.1 | 3-30-05 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SUBSTRATE AND S-ADENOSYLHOMOCYSTEINE. | T.T.LEE,S.AGARWALLA,R.M.STROUD | |
3B5S | FR3D | 59 | 28 | 2.2 | 8-12-08 | synthetic | MINIMALLY HINGED HAIRPIN RIBOZYME INCORPORATES A38DAP MUTATION AND 2'-O-METHYL MODIFICATION AT THE ACTIVE SITE | C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND | 3B58 3I2R 3BBK 3BBI 3B91 3I2Q 3B5F 3CQS 3B5A 3BBM 3I2U 3CR1 3I2S |
3K1V | FR3D | 29 | 13 | 2.2 | 10-06-09 | synthetic | COCRYSTAL STRUCTURE OF A MUTANT CLASS-I PREQ1 RIBOSWITCH | D.J.KLEIN,T.E.EDWARDS,A.R.FERRE-D'AMARE | 3FU2 |
1OOA | FR3D | 58 | 18 | 2.5 | 7-22-03 | synthetic | CRYSTAL STRUCTURE OF NF-KB(P50)2 COMPLEXED TO A HIGH- AFFINITY RNA APTAMER | D.B.HUANG,D.VU,L.A.CASSIDAY,J.M.ZIMMERMAN,L.J.MAHER III, G.GHOSH | |
3B31 | FR3D | 43 | 16 | 2.4 | 12-25-07 | synthetic | CRYSTAL STRUCTURE OF DOMAIN III OF THE CRICKET PARALYSIS VIRUS IRES RNA | J.S.KIEFT,D.A.COSTANTINO,J.S.PFINGSTEN,R.P.RAMBO | 3MJA 3MJB 3MJ3 |
1Q96 | FR3D | 81 | 37 | 1.8 | 11-25-03 | synthetic | CRYSTAL STRUCTURE OF A MUTANT OF THE SARCIN/RICIN DOMAIN FROM RAT 28S RRNA | C.C.CORRELL,J.BENEKEN,M.J.PLANTINGA,M.LUBBERS,Y.L.CHAN | 430D 1Q93 |
2NUF | FR3D | 56 | 26 | 2.5 | 11-20-07 | synthetic | CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.5-ANGSTROM RESOLUTION | J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI | |
2EZ6 | FR3D | 56 | 26 | 2.0 | 2-07-06 | synthetic | CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS RNASE III (D44N) COMPLEXED WITH PRODUCT OF DOUBLE-STRANDED RNA PROCESSING | J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI | |
3DVZ | FR3D | 27 | 10 | 1.0 | 3-24-09 | synthetic | CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA | V.OLIERIC,U.RIEDER,K.LANG,A.SERGANOV,C.SCHULZE-BRIESE,R.MICURA, P.DUMAS,E.ENNIFAR | 1Q9A 480D 3DW6 483D 3DW4 3DW5 1MSY 3DW7 |
1D4R | FR3D | 81 | 22 | 2.0 | 12-02-99 | synthetic | -MER FRAGMENT OF HUMAN SRP RNA HELIX 6 | K.WILD,O.WEICHENRIEDER,G.A.LEONARD,S.CUSACK | |
1L2X | FR3D | 27 | 14 | 1.2 | 3-22-02 | synthetic | ATOMIC RESOLUTION CRYSTAL STRUCTURE OF A VIRAL RNA PSEUDOKNOT | M.EGLI,G.MINASOV,L.SU,A.RICH | 437D 1L3D |
1JID | FR3D | 26 | 10 | 1.8 | 10-19-01 | synthetic | HUMAN SRP19 IN COMPLEX WITH HELIX 6 OF HUMAN SRP RNA | K.WILD,I.SINNING,S.CUSACK | 1L1W |
2A43 | FR3D | 26 | 13 | 1.3 | 9-27-05 | synthetic | CRYSTAL STRUCTURE OF A LUTEOVIRAL RNA PSEUDOKNOT AND MODEL FOR A MINIMAL RIBOSOMAL FRAMESHIFTING MOTIF | P.S.PALLAN,W.S.MARSHALL,J.HARP,F.C.JEWETT III,Z.WAWRZAK, B.A.BROWN II,A.RICH,M.EGLI | |
2QUX | FR3D | 150 | 54 | 2.4 | 12-18-07 | PSEUDOMONAS PHAGE PP7 | PP7 COAT PROTEIN DIMER IN COMPLEX WITH RNA HAIRPIN | J.A.CHAO | |
2ANN | FR3D | 23 | 6 | 2.3 | 10-24-06 | synthetic | CRYSTAL STRUCTURE (I) OF NOVA-1 KH1/KH2 DOMAIN TANDEM WITH 25 NT RNA HAIRPIN | L.MALININA,M.TEPLOVA,K.MUSUNURU,A.TEPLOV,J.C.DARNELL, S.K.BURLEY,R.B.DARNELL,D.J.PATEL | 2ANR |
2PN4 | FR3D | 84 | 32 | 2.3 | 4-01-08 | synthetic | CRYSTAL STRUCTURE OF HEPATITIS C VIRUS IRES SUBDOMAIN IIA | Q.ZHAO,Q.HAN,C.R.KISSINGER,P.A.THOMPSON | 2PN3 2NOK |
1A9N | FR3D | 48 | 12 | 2.4 | 9-23-98 | HOMO SAPIENS | CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B''-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUCLEAR RNA | S.R.PRICE,P.R.EVANS,K.NAGAI | |
1XPF | FR3D | 46 | 20 | 2.3 | 10-18-05 | synthetic | HIV-1 SUBTYPE A GENOMIC RNA DIMERIZATION INITIATION SITE | E.ENNIFAR,P.DUMAS | 1YXP 2FD0 2FCY 1ZCI 1Y3S 1Y3O 2FCX 1XP7 2FCZ 1K9W 2B8S |
2PJP | FR3D | 23 | 10 | 2.3 | 10-30-07 | ESCHERICHIA COLI | STRUCTURE OF THE MRNA-BINDING DOMAIN OF ELONGATION FACTOR SELB FROM E.COLI IN COMPLEX WITH SECIS RNA | N.SOLER,D.FOURMY,S.YOSHIZAWA | |
2QEK | FR3D | 46 | 20 | 1.8 | 5-06-08 | synthetic | HIV-1 SUBTYPE F DIS RNA EXTENDED DUPLEX FORM | S.FREISZ,E.ENNIFAR,P.DUMAS | |
1NLC | FR3D | 46 | 22 | 1.9 | 5-13-03 | synthetic | HIV-1 DIS(MAL) DUPLEX ZN-SOAKED | E.ENNIFAR,P.WALTER,P.DUMAS | 1Y73 1WVD 1Y6T 3C44 1Y6S 462D 3DVV 1Y95 1O3Z 1Y90 1Y99 |
2UWM | FR3D | 46 | 19 | 2.3 | 5-08-07 | MOORELLA THERMOACETICA | C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA | T.OSE,N.SOLER,L.RASUBALA,K.KUROKI,D.KOHDA,D.FOURMY, S.YOSHIZAWA,K.MAENAKA | 1WSU 2PLY |
2OIY | FR3D | 46 | 20 | 1.6 | 12-25-07 | synthetic | CRYSTAL STRUCTURE OF THE DUPLEX FORM OF THE HIV-1(LAI) RNA DIMERIZATION INITIATION SITE | E.ENNIFAR,P.WALTER,P.DUMAS | 2OJ0 2OIJ 3FAR |
1XPE | FR3D | 46 | 20 | 1.9 | 10-18-05 | synthetic | HIV-1 SUBTYPE B GENOMIC RNA DIMERIZATION INITIATION SITE | E.ENNIFAR,P.DUMAS | 2B8R |
3BNQ | FR3D | 86 | 32 | 2.0 | 6-24-08 | synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE IN THE PRESENCE OF SRCL2 (A1555G MUTANT, BR-DERIVATIVE) | J.KONDO,E.WESTHOF | 3BNR 3BNS |
2FQN | FR3D | 43 | 18 | 2.3 | 2-14-06 | synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING A SITE | J.KONDO,A.URZHUMTSEV,E.WESTHOF | 2G5K 2O3W 2O3Y |
3MEI | FR3D | 44 | 19 | 2.0 | 1-26-11 | synthetic | REGULATORY MOTIF FROM THE THYMIDYLATE SYNTHASE MRNA | S.DIBROV,J.MCLEAN,T.HERMANN | |
3LOA | FR3D | 42 | 15 | 2.3 | 8-04-10 | synthetic | CRYSTAL STRUCTURE ANALYSIS OF THE RNA CONSTRUCT WITH TWO ADJACENT LIGAND BINDING SITES OF HELIX H44 IN 16S RIBOSOMAL RNA | S.DIBROV | |
1FEU | FR3D | 80 | 32 | 2.3 | 6-25-01 | synthetic | CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA. | R.V.FEDOROV,V.A.MESHCHERYAKOV,G.M.GONGADZE,N.P.FOMENKOVA, N.A.NEVSKAYA,M.SELMER,M.LAURBERG,O.KRISTENSEN,S.AL- KARADAGHI,A.LILJAS,M.B.GARBER,S.V.NIKONOV | |
3BNO | FR3D | 80 | 27 | 2.4 | 6-24-08 | synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE (BR-DERIVATIVE) | J.KONDO,E.WESTHOF | 3BNP 3BNN |
1URN | FR3D | 55 | 13 | 1.9 | 3-08-96 | synthetic | U1A MUTANT/RNA COMPLEX + GLYCEROL | C.OUBRIDGE,N.ITO,P.R.EVANS,C.-H.TEO,K.NAGAI | |
1MWL | FR3D | 42 | 18 | 2.4 | 2-18-03 | synthetic | CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE | Q.VICENS,E.WESTHOF | 2ESJ 2G5Q 1J7T 2ET4 1YRJ 2BEE 2ET5 1LC4 2ESI 2PWT 2BE0 2F4T 2ET3 |
1O9M | FR3D | 42 | 17 | 2.4 | 3-27-03 | ESCHERICHIA COLI | THE COMPLEX OF A NOVEL ANTIBIOTIC WITH THE AMINOACYL SITE OF THE BACTERIAL RIBOSOME REVEALED BY X-RAY CRYSTALLOGRAPHY. | R.RUSSELL,J.B.MURRAY | 2F4U 2ET8 |
2ZKO | FR3D | 42 | 18 | 1.7 | 10-14-08 | INFLUENZA A VIRUS | STRUCTURAL BASIS FOR DSRNA RECOGNITION BY NS1 PROTEIN OF HUMAN INFLUENZA VIRUS A | Y.A.YUAN | |
1K8W | FR3D | 21 | 8 | 1.9 | 12-31-01 | synthetic | CRYSTAL STRUCTURE OF THE E. COLI PSEUDOURIDINE SYNTHASE TRUB BOUND TO A T STEM-LOOP RNA | C.HOANG,A.R.FERRE-D'AMARE | 1ZL3 |
1RPU | FR3D | 42 | 19 | 2.5 | 1-13-04 | synthetic | CRYSTAL STRUCTURE OF CIRV P19 BOUND TO SIRNA | J.M.VARGASON,G.SZITTYA,J.BURGYAN,T.M.T.HALL | |
1EC6 | FR3D | 40 | 9 | 2.4 | 2-21-00 | synthetic | CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN BOUND TO 20-MER RNA HAIRPIN | H.A.LEWIS,K.MUSUNURU,K.B.JENSEN,C.EDO,H.CHEN | |
2I82 | FR3D | 79 | 28 | 2.0 | 11-21-06 | synthetic | CRYSTAL STRUCTURE OF PSEUDOURIDINE SYNTHASE RLUA: INDIRECT SEQUENCE READOUT THROUGH PROTEIN-INDUCED RNA STRUCTURE | C.HOANG | |
2P7E | FR3D | 60 | 28 | 2.0 | 5-22-07 | synthetic | VANADATE AT THE ACTIVE SITE OF A SMALL RIBOZYME SUGGESTS A ROLE FOR WATER IN TRANSITION-STATE STABILIZATION | A.T.TORELLI,J.KRUCINSKA,J.E.WEDEKIND | 3GS8 2P7D 1ZFX 3GS1 2OUE 1X9K 2D2K 2FGP 1X9C 2P7F 2NPZ 2BCZ 1ZFT 2NPY 2BCY 1ZFV |
1QC0 | FR3D | 57 | 28 | 1.6 | 11-11-99 | synthetic | CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX | P.S.KLOSTERMAN,S.A.SHAH,T.A.STEITZ | |
1DFU | FR3D | 38 | 15 | 1.8 | 12-02-99 | synthetic | CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION | M.LU,T.A.STEITZ | |
1F27 | FR3D | 30 | 14 | 1.3 | 6-12-00 | synthetic | CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT | J.NIX,D.SUSSMAN,C.WILSON | |
1R9F | FR3D | 38 | 19 | 1.9 | 1-27-04 | synthetic | CRYSTAL STRUCTURE OF P19 COMPLEXED WITH 19-BP SMALL INTERFERING RNA | K.YE,L.MALININA,D.J.PATEL | |
2AB4 | FR3D | 19 | 7 | 2.4 | 12-13-05 | synthetic | DISSECTING THE ROLES OF A STRICTLY CONSERVED TYROSINE IN SUBSTRATE RECOGNITION AND CATALYSIS BY PSEUDOURIDINE 55 SYNTHASE | K.PHANNACHET,Y.ELIAS,R.H.HUANG | 1ZE2 |
1ZEV | FR3D | 36 | 13 | 1.6 | 10-25-05 | synthetic | CRYSTAL STRUCTURE OF A PATHOGENIC RNA: CUG REPEATS | B.H.MOOERS,J.S.LOGUE,J.A.BERGLUND | 3GM7 |
1T0D | FR3D | 64 | 28 | 2.2 | 6-15-04 | synthetic | CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA | S.SHANDRICK,Q.ZHAO,Q.HAN,B.K.AYIDA,M.TAKAHASHI,G.C.WINTERS, K.B.SIMONSEN,D.VOURLOUMIS,T.HERMANN | 2A04 1ZZ5 1T0E 1ZX7 |
3OL9 | FR3D | 140 | 62 | 2.2 | 12-22-10 | synthetic | POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH 3'-DEOXY-CTP | P.GONG,O.B.PEERSEN | 3OLB 3OL7 3OL8 3OL6 3OLA |
3BT7 | FR3D | 36 | 11 | 2.4 | 4-29-08 | synthetic | STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE TRMA IN COMPLEX WITH 19 NUCLEOTIDE T-ARM ANALOGUE | A.ALIAN,R.M.STROUD,J.FINER-MOORE | |
3KS8 | FR3D | 36 | 18 | 2.4 | 1-12-10 | synthetic | CRYSTAL STRUCTURE OF RESTON EBOLAVIRUS VP35 RNA BINDING DOMAIN IN COMPLEX WITH 18BP DSRNA | C.R.KIMBERLIN,Z.A.BORNHOLDT,S.LI,V.L.WOODS,I.J.MACRAE, E.O.SAPHIRE | |
2OE5 | FR3D | 33 | 14 | 1.5 | 2-13-07 | synthetic | .5 A X-RAY CRYSTAL STRUCTURE OF APRAMYCIN COMPLEX WITH RNA FRAGMENT GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC CONTAINING THE HUMAN RIBOSOMAL DECODING A SITE: RNA CONSTRUCT WITH 3'- OVERHANG | T.HERMANN,V.TERESHKO,E.SKRIPKIN,D.J.PATEL | 2OE8 2OE6 |
1R3E | FR3D | 50 | 20 | 2.1 | 11-04-03 | synthetic | CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA-PROTEIN RECOGNITION THROUGH A COMBINATION OF RIGID DOCKING AND INDUCED FIT | H.PAN,S.AGARWALLA,D.T.MOUSTAKAS,J.FINER-MOORE,R.M.STROUD | |
1JBS | FR3D | 34 | 12 | 2.0 | 10-26-01 | synthetic | CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN AND A 29-MER SRD RNA ANALOG | X.YANG,T.GERCZEI,L.GLOVER,C.C.CORRELL | |
2D2L | FR3D | 58 | 26 | 2.5 | 11-01-05 | synthetic | CRYSTAL STRUCTURE OF A MINIMAL, ALL-RNA HAIRPIN RIBOZYME WITH A PROPYL LINKER (C3) AT POSITION U39 | S.ALAM,V.GRUM-TOKARS,J.KRUCINSKA,M.L.KUNDRACIK,J.E.WEDEKIND | |
420D | FR3D | 32 | 16 | 1.9 | 1-13-99 | synthetic | CRYSTAL STRUCTURE OF A 16-MER RNA DUPLEX WITH NON-ADJACENT A(ANTI).G(SYN) MISMATCHES | B.PAN,S.N.MITRA,M.SUNDARALINGAM | 1YZD 1YY0 1Z7F 1Z79 405D 2H1M |
406D | FR3D | 32 | 15 | 1.8 | 2-05-99 | engineered | '-R(*CP*AP*CP*CP*GP*GP*AP*UP*GP*GP*UP*(BRO) UP*CP*GP*GP*UP*G)-3' | S.A.SHAH,A.T.BRUNGER | |
2BU1 | FR3D | 32 | 12 | 2.2 | 8-18-05 | BACTERIOPHAGE MS2 | MS2-RNA HAIRPIN (5BRU-5) COMPLEX | E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS | 2B2E 2IZM 1AQ4 2B2G 2C4Y 2C51 2BQ5 2BNY 1ZDH 1AQ3 2IZ8 2C4Q 1ZDK 2C4Z 2C50 2IZ9 1ZDI |
3AGV | FR3D | 25 | 2 | 2.1 | 11-10-10 | synthetic | CRYSTAL STRUCTURE OF A HUMAN IGG-APTAMER COMPLEX | Y.NOMURA,S.SUGIYAMA,T.SAKAMOTO,S.MIYAKAWA,H.ADACHI,K.TAKANO, S.MURAKAMI,T.INOUE,Y.MORI,Y.NAKAMURA,H.MATSUMURA | |
397D | FR3D | 27 | 11 | 1.3 | 9-11-98 | synthetic | A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS- ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION- DEPENDENT BULGE CONFORMATION | J.A.IPPOLITO,T.A.STEITZ | |
1CSL | FR3D | 28 | 11 | 1.6 | 2-14-00 | synthetic | CRYSTAL STRUCTURE OF THE RRE HIGH AFFINITY SITE | J.A.IPPOLITO,T.A.STEITZ | |
3DD2 | FR3D | 15 | 3 | 1.9 | 11-11-08 | synthetic | CRYSTAL STRUCTURE OF AN RNA APTAMER BOUND TO HUMAN THROMBIN | S.B.LONG,B.A.SULLENGER | |
2B3J | FR3D | 50 | 12 | 2.0 | 1-24-06 | synthetic | CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE, TADA, IN COMPLEX WITH RNA | H.C.LOSEY,A.J.RUTHENBURG,G.L.VERDINE | |
2F8K | FR3D | 15 | 6 | 2.0 | 1-24-06 | synthetic | SEQUENCE SPECIFIC RECOGNITION OF RNA HAIRPINS BY THE SAM DOMAIN OF VTS1 | T.AVIV,Z.LIN,G.BEN-ARI,C.A.SMIBERT,F.SICHERI | |
3EQT | FR3D | 16 | 8 | 2.0 | 3-10-09 | synthetic | CRYSTAL STRUCTURE OF HUMAN LGP2 C-TERMINAL DOMAIN IN COMPLEX WITH DSRNA | P.LI,X.LI | 3OG8 1DI2 1PBM 3JXQ 3ADL 1RC7 3JXR 1G3A 3LRN |
1MHK | FR3D | 26 | 9 | 2.5 | 9-06-02 | synthetic | CRYSTAL STRUCTURE ANALYSIS OF A 26MER RNA MOLECULE, REPRESENTING A NEW RNA MOTIF, THE HOOK-TURN | S.SZEP,J.WANG,P.B.MOORE | |
1DUQ | FR3D | 104 | 44 | 2.1 | 5-16-00 | synthetic | CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1 | L.-W.HUNG,E.L.HOLBROOK,S.R.HOLBROOK | |
1RNA | FR3D | 28 | 14 | 2.2 | 4-15-91 | synthetic | CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2 | A.C.DOCK-BREGEON,B.CHEVRIER,A.PODJARNY,J.JOHNSON,J.S.DE BEAR,G.R.GOUGH,P.T.GILHAM,D.MORAS | |
2XLI | FR3D | 13 | 5 | 2.3 | 9-22-10 | PSEUDOMONAS AERUGINOSA | CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, MONOCLINIC FORM | R.E.HAURWITZ,M.JINEK,B.WIEDENHEFT,K.ZHOU,J.A.DOUDNA | 2XLJ 2XLK |
433D | FR3D | 28 | 14 | 2.1 | 12-04-98 | synthetic | CRYSTAL STRUCTURE OF A 14 BASE PAIR RNA DUPLEX WITH NONSYMMETRICAL TANDEM G.U WOBBLE BASE PAIRS | J.TRIKHA,D.J.FILMAN,J.M.HOGLE | |
3OIN | FR3D | 14 | 4 | 1.9 | 12-01-10 | synthetic | CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE NEP1/EMG1 BOUND TO S- ADENOSYLHOMOCYSTEINE AND 1 MOLECULE OF COGNATE RNA | S.R.THOMAS,N.LARONDE-LEBLANC | 3OIJ |
3CGR | FR3D | 24 | 10 | 2.1 | 7-01-08 | synthetic | X-RAY STRUCTURE CONTAINING THE PSEUDOURIDYLATED U2 SNRNA AND INTRON BRANCH SITE CONSENSUS SEQUENCES | Y.LIN,C.L.KIELKOPF | |
1NUJ | FR3D | 96 | 37 | 1.8 | 8-19-03 | synthetic | THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION | J.E.WEDEKIND,D.B.MCKAY | 1NUV 429D |
3CGS | FR3D | 24 | 10 | 1.6 | 7-01-08 | synthetic | X-RAY STRUCTURE CONTAINING THE PSEUDOURIDYLATED U2 SNRNA AND MAMMALIAN INTRON BRANCH SITE CONSENSUS SEQUENCES | Y.LIN,C.L.KIELKOPF | |
1FUF | FR3D | 26 | 12 | 1.7 | 11-09-01 | synthetic | CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE | J.DENG,Y.XIONG,C.SUDARSANAKUMAR,K.SHI,M.SUNDARALINGAM | 1IK5 |
3CGP | FR3D | 24 | 10 | 1.6 | 7-01-08 | synthetic | X-RAY STRUCTURE OF A PSEUDOURIDINE-CONTAINING YEAST SPLICEOSOMAL U2 SNRNA-INTRON BRANCH SITE DUPLEX BOUND TO IODIDE IONS | Y.LIN,C.L.KIELKOPF | 3CGQ |
1TFW | FR3D | 76 | 28 | 2.2 | 8-10-04 | synthetic | HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE | Y.XIONG,T.A.STEITZ | |
2R22 | FR3D | 26 | 13 | 1.4 | 9-25-07 | synthetic | STRUCTURE OF THE NATIVE RNA TRIDECAMER R(GCGUUUGAAACGC) AT 1.5 A (NATMN) | Y.TIMSIT,S.BOMBARD | 2R1S 2R21 2R20 |
1I9X | FR3D | 26 | 12 | 2.2 | 9-05-01 | synthetic | CRYSTAL STRUCTURE OF BPS-U2 SNRNA DUPLEX | J.A.BERGLUND,M.ROSBASH,S.C.SCHULTZ | |
354D | FR3D | 22 | 8 | 1.5 | 11-26-97 | ESCHERICHIA COLI | STRUCTURE OF LOOP E FROM E. COLI 5S RRNA | C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ | |
157D | FR3D | 24 | 12 | 1.8 | 5-31-94 | synthetic | CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS | G.A.LEONARD,K.E.MCAULEY-HECHT,S.EBEL,D.M.LOUGH,T.BROWN, W.N.HUNTER | 1YYO 1YYK 2G92 2Q1R 2Q1O |
3CJZ | FR3D | 24 | 10 | 1.8 | 10-14-08 | synthetic | EFFECTS OF N2,N2-DIMETHYLGUANOSINE ON RNA STRUCTURE AND STABILITY: CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH TANDEM M22G:A PAIRS | P.S.PALLAN,C.KREUTZ,S.BOSIO,R.MICURA,M.EGLI | |
1QBP | FR3D | 72 | 29 | 2.1 | 11-26-99 | synthetic | CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS | A.C.ANDERSON,R.H.O'NEIL,D.J.FILMAN,C.A.FREDERICK | |
280D | FR3D | 48 | 24 | 2.4 | 9-30-96 | engineered | THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES | S.E.LIETZKE,C.L.BARNES,C.E.KUNDROT | |
2BS0 | FR3D | 21 | 6 | 2.5 | 3-22-06 | BACTERIOPHAGE MS2 | MS2 (N87AE89K MUTANT) - VARIANT QBETA RNA HAIRPIN COMPLEX | W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY | 1ZSE 2B2D 2BS1 |
353D | FR3D | 24 | 11 | 2.4 | 11-10-97 | synthetic | CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE | C.BETZEL,S.LORENZ,J.P.FURSTE,R.BALD,M.ZHANG,T.R.SCHNEIDER, K.S.WILSON,V.A.ERDMANN | |
1KD5 | FR3D | 22 | 10 | 1.6 | 3-04-03 | synthetic | THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2 METAL FREE FORM | V.KACER,S.A.SCARINGE,J.N.SCARSDALE,J.P.RIFE | 1KD4 1KD3 |
2NUG | FR3D | 44 | 20 | 1.7 | 11-20-07 | synthetic | CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 1.7-ANGSTROM RESOLUTION | J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI | |
3IBK | FR3D | 22 | 12 | 2.2 | 5-12-10 | synthetic | CRYSTAL STRUCTURE OF A TELOMERIC RNA QUADRUPLEX | G.W.COLLIE,S.NEIDLE,G.N.PARKINSON | |
1QCU | FR3D | 44 | 22 | 1.2 | 11-11-99 | synthetic | CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX | P.S.KLOSTERMAN,S.A.SHAH,T.A.STEITZ | |
3LRR | FR3D | 22 | 9 | 2.1 | 6-02-10 | synthetic | CRYSTAL STRUCTURE OF HUMAN RIG-I CTD BOUND TO A 12 BP AU RICH 5' PPP DSRNA | P.LI | |
1LNT | FR3D | 22 | 11 | 1.7 | 6-03-03 | synthetic | CRYSTAL STRUCTURE OF THE HIGHLY CONSERVED RNA INTERNAL LOOP OF SRP | J.DENG,Y.XIONG,B.PAN,M.SUNDARALINGAM | |
3FS0 | FR3D | 21 | 8 | 2.3 | 2-24-09 | synthetic | CLASS II LIGASE RIBOZYME PRODUCT-TEMPLATE DUPLEX, STRUCTURE 2 | J.N.PITT,A.R.FERRE-D'AMARE | 3FTM |
1YZ9 | FR3D | 44 | 20 | 2.1 | 11-22-05 | synthetic | CRYSTAL STRUCTURE OF RNASE III MUTANT E110Q FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.1- ANGSTROM RESOLUTION | J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI | |
1A34 | FR3D | 20 | 9 | 1.8 | 4-29-98 | synthetic,TOBACCO NECROSIS SATELLITE VIRUS | SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX | S.B.LARSON,J.DAY,A.J.GREENWOOD,A.MCPHERSON | |
3NJ7 | FR3D | 60 | 24 | 1.9 | 8-25-10 | synthetic | .9 A RESOLUTION X-RAY STRUCTURE OF (GGCAGCAGCC)2 | A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI | 3NJ6 |
1DQH | FR3D | 19 | 9 | 1.7 | 11-13-00 | synthetic | CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS | Y.XIONG,M.SUNDARALINGAM | 1DQF |
3BSO | FR3D | 16 | 7 | 1.7 | 1-08-08 | synthetic | NORWALK VIRUS POLYMERASE BOUND TO CYTIDINE 5'-TRIPHOSPHATE AND PRIMER-TEMPLATE RNA | D.F.ZAMYATKIN,K.K.S.NG | 3H5X 3H5Y |
1ZH5 | FR3D | 18 | 4 | 1.9 | 1-17-06 | synthetic | STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOANTIGEN | M.TEPLOVA,Y.R.YUAN,S.ILIN,L.MALININA,A.T.PHAN,A.TEPLOV, D.J.PATEL | 1YTY |
1G2E | FR3D | 9 | 1 | 2.3 | 2-05-01 | synthetic | CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE TUMOR NECROSIS FACTOR ALPHA RNA | X.WANG,T.M.T.HALL | |
1YVP | FR3D | 44 | 10 | 2.2 | 6-07-05 | synthetic | RO AUTOANTIGEN COMPLEXED WITH RNAS | A.J.STEIN,G.FUCHS,C.FU,S.L.WOLIN,K.M.REINISCH | |
2AO5 | FR3D | 36 | 16 | 2.1 | 3-28-06 | synthetic | CRYSTAL STRUCTURE OF AN RNA DUPLEX R(GGCGBRUGCGCU)2 WITH TERMINAL AND INTERNAL TANDEM G-U BASE PAIRS | R.UTSUNOMIYA,K.SUTO,D.BALASUNDARESAN,A.FUKAMIZU,P.K.KUMAR, H.MIZUNO | |
2G91 | FR3D | 15 | 6 | 1.5 | 4-03-07 | synthetic | CRYSTAL STRUCTURE ANALYSIS OF THE AN RNA NONAMER R(GGUGCGC) D(BRC)R(C) | K.SHI,B.PAN,M.SUNDARALINGAM | |
2GQ6 | FR3D | 32 | 16 | 1.3 | 6-27-06 | synthetic | CRYSTAL STRUCTURE OF AN RNA RACEMATE | W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL, V.A.ERDMANN | 2GQ5 2GPM 2G32 2GQ7 2GQ4 |
2G3S | FR3D | 80 | 40 | 1.5 | 1-16-07 | synthetic | RNA STRUCTURE CONTAINING GU BASE PAIRS | S.B.JANG,L.W.HUNG,M.S.JEONG,E.L.HOLBROOK,X.CHEN,D.H.TURNER, S.R.HOLBROOK | 1EKD |
3BSN | FR3D | 16 | 6 | 1.8 | 1-08-08 | synthetic | NORWALK VIRUS POLYMERASE BOUND TO 5-NITROCYTIDINE TRIPHOSPHATE AND PRIMER-TEMPLATE RNA | D.F.ZAMYATKIN,K.K.S.NG | |
1N35 | FR3D | 13 | 5 | 2.5 | 12-25-02 | synthetic | LAMBDA3 ELONGATION COMPLEX WITH FOUR PHOSPHODIESTER BOND FORMED | Y.TAO,D.L.FARSETTA,M.L.NIBERT,S.C.HARRISON | 1N1H 1UON |
2BGG | FR3D | 29 | 10 | 2.2 | 3-31-05 | synthetic | THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT SIRNA DUPLEX. | J.S.PARKER,S.M.ROE,D.BARFORD | |
439D | FR3D | 16 | 8 | 1.6 | 9-14-01 | synthetic | '-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'- R(*CP*CP*GP*CP*CP*UP*GP*G)-3' | M.PERBANDT,S.LORENZ,M.VALLAZZA,V.A.ERDMANN,C.BETZEL | |
1J9H | FR3D | 32 | 16 | 1.4 | 10-26-01 | synthetic | CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES | Y.XIONG,J.DENG,C.SUDARSANAKUMAR,M.SUNDARALINGAM | |
438D | FR3D | 16 | 8 | 2.5 | 5-12-99 | synthetic | STRUCTURE OF AN RNA DUPLEX R(GGGCGCUCC)2 WITH NON-ADJACENT G.U BASE PAIRS | K.SHI,M.C.WAHL,M.SUNDARALINGAM | |
1JZV | FR3D | 30 | 15 | 1.7 | 11-11-03 | synthetic | CRYSTAL STRUCTURE OF A BULGED RNA FROM THE SL2 STEM-LOOP OF THE HIV-1 PSI-RNA | Y.XIONG,C.SUDARSANAKUMAR,J.DENG,B.PAN,M.SUNDARALINGAM | |
402D | FR3D | 16 | 8 | 2.3 | 6-16-98 | synthetic | '-R(*CP*GP*CP*CP*AP*GP*CP*G)-3' | S.B.JANG,L.-W.HUNG,Y.-I.CHI,E.L.HOLBROOK,R.CARTER, S.R.HOLBROOK | |
1FXL | FR3D | 8 | 1 | 1.8 | 2-05-01 | synthetic | CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE C-FOS RNA | X.WANG,T.M.T.HALL | |
435D | FR3D | 28 | 14 | 1.4 | 6-14-99 | synthetic | '-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | U.MUELLER,H.SCHUEBEL,M.SPRINZL,U.HEINEMANN | 3M85 3M7N 1G2J 2XPJ 2FZ2 1RXA 2WJ8 1RXB 259D |
398D | FR3D | 24 | 8 | 1.9 | 10-06-98 | synthetic | '-DNA-RNA-5' JUNCTION FORMED DURING INITIATION OF MINUS- STRAND SYNTHESIS OF HIV REPLICATION | U.MUELLER,G.MEIER,A.MOCHI-ONORI,L.CELLAI,H.HEUMANN | |
472D | FR3D | 16 | 8 | 1.9 | 11-27-00 | synthetic | STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS | J.DENG,M.SUNDARALINGAM | |
165D | FR3D | 16 | 8 | 1.6 | 8-31-94 | synthetic | THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE | W.CRUSE,P.SALUDJIAN,E.BIALA,P.STRAZEWSKI,T.PRANGE,O.KENNARD | |
3L25 | FR3D | 16 | 8 | 2.0 | 1-26-10 | synthetic | CRYSTAL STRUCTURE OF ZAIRE EBOLA VP35 INTERFERON INHIBITORY DOMAIN BOUND TO 8 BP DSRNA | D.W.LEUNG,K.C.PRINS,D.M.BOREK,M.FARAHBAKHSH,J.M.TUFARIELLO, P.RAMANAN,J.C.NIX,L.A.HELGESON,Z.OTWINOWSKI,R.B.HONZATKO, C.F.BASLER,G.K.AMARASINGHE | 3L26 333D |
3GLP | FR3D | 40 | 12 | 1.2 | 5-26-09 | synthetic | .23 A RESOLUTION X-RAY STRUCTURE OF (GCUGCUGC)2 | A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI | |
466D | FR3D | 28 | 14 | 1.2 | 8-16-99 | synthetic | DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | U.MUELLER,Y.A.MULLER,R.HERBST-IRMER,M.SPRINZL,U.HEINEMANN | 464D 434D |
2VAL | FR3D | 28 | 14 | 2.0 | 10-16-07 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF AN ESCHERICHIA COLI TRNAGLY MICROHELIX AT 2.0 ANGSTROM RESOLUTION | C.FORSTER,A.B.E.BRAUER,M.PERBANDT,D.LEHMANN,J.P.FURSTE, C.BETZEL,V.A.ERDMANN | |
2V6W | FR3D | 14 | 7 | 1.8 | 11-06-07 | ESCHERICHIA COLI | TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION | C.FOERSTER,A.B.E.BRAUER,S.BRODE,J.P.FUERSTE,C.BETZEL, V.A.ERDMANN | 1R9S 1SFO 2E2I 2KYE 3GTP 3GTJ 2NVZ 2NVQ 1R9T 2E2H 3GTQ 2YU9 2NVX 3GTG 3GTM 3GTL 3GTO 2E2J |
409D | FR3D | 42 | 18 | 2.5 | 1-13-99 | synthetic | CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOBBLES | B.PAN,S.N.MITRA,L.SUN,D.HART,M.SUNDARALINGAM | |
2V7R | FR3D | 14 | 7 | 1.2 | 3-18-08 | HOMO SAPIENS | CRYSTAL STRUCTURE OF A HUMAN TRNAGLY MICROHELIX AT 1.2 ANGSTROM RESOLUTION | C.FOERSTER,M.MANKOWSKA,J.P.FUERSTE,M.PERBANDT,C.BETZEL, V.A.ERDMANN | |
3KMQ | FR3D | 10 | 5 | 2.1 | 7-07-10 | synthetic | G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA, TETRAGONAL STRUCTURE | C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE | 1RAU 1WTT 3KOA 3KLV 3KMS 2E9Z 2E9R 1WNE 3KNA 2E9T 1ME1 2EC0 1QLN |
3GVN | FR3D | 14 | 7 | 1.2 | 7-28-09 | synthetic | THE 1.2 ANGSTROEM CRYSTAL STRUCTURE OF AN E.COLI TRNASER ACCEPTOR STEM MICROHELIX REVEALS TWO MAGNESIUM BINDING SITES | A.EICHERT,J.P.FURSTE,A.SCHREIBER,M.PERBANDT,C.BETZEL, V.A.ERDMANN,C.FORSTER | |
2VUQ | FR3D | 14 | 7 | 1.2 | 3-10-09 | HOMO SAPIENS | CRYSTAL STRUCTURE OF A HUMAN TRNAGLY ACCEPTOR STEM MICROHELIX (DERIVED FROM THE GENE SEQUENCE DG9990) AT 1.18 ANGSTROEM RESOLUTION | A.EICHERT,M.PERBANDT,A.SCHREIBER,J.P.FUERSTE,C.BETZEL, V.A.ERDMANN,C.FOERSTER | 2JLV 1FL8 2L9E 2JLY 2K65 2O81 2JLU 2JLW 2JLX 2JLZ 2W89 |
1L3Z | FR3D | 14 | 1 | 2.0 | 2-25-03 | synthetic | CRYSTAL STRUCTURE ANALYSIS OF AN RNA HEPTAMER | K.SHI,B.PAN,M.SUNDARALINGAM | |
2A0P | FR3D | 14 | 6 | 1.9 | 8-16-05 | synthetic | CRYSTAL STRUCTURE OF RNA OLIGOMER CONTAINING 4'-THIORIBOSE | P.HAEBERLI,I.BERGER,P.S.PALLAN,M.EGLI | |
1J8G | FR3D | 24 | 4 | 0.6 | 11-23-01 | synthetic | X-RAY ANALYSIS OF A RNA TETRAPLEX R(UGGGGU)4 AT ULTRA-HIGH RESOLUTION | J.DENG,Y.XIONG,M.SUNDARALINGAM | |
1YTU | FR3D | 19 | 7 | 2.5 | 4-05-05 | synthetic | STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF THE GUIDE RNA STRAND BY THE A. FULGIDUS PIWI PROTEIN | J.B.MA,Y.R.YUAN,G.MEISTER,Y.PEI,T.TUSCHL,D.J.PATEL | |
3MDI | FR3D | 6 | 1 | 2.1 | 6-02-10 | synthetic | CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FACTOR IM IN COMPLEX WITH RNA UGUAAA | Q.YANG,G.M.GILMARTIN,S.DOUBLIE | |
3G9Y | FR3D | 6 | 1 | 1.4 | 3-03-09 | synthetic | CRYSTAL STRUCTURE OF THE SECOND ZINC FINGER FROM ZRANB2/ZNF265 BOUND TO 6 NT SSRNA SEQUENCE AGGUAA | F.E.LOUGHLIN,A.P.MCGRATH,M.LEE,J.M.GUSS,J.P.MACKAY | |
3MDG | FR3D | 6 | 1 | 2.2 | 6-02-10 | synthetic | CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FACTOR IM IN COMPLEX WITH RNA UUGUAU | Q.YANG,G.M.GILMARTIN,S.DOUBLIE | 3Q2T |
2GXB | FR3D | 12 | 6 | 2.2 | 5-01-07 | synthetic | CRYSTAL STRUCTURE OF THE ZA DOMAIN BOUND TO Z-RNA | A.ATHANASIADIS,D.PLACIDO,A.RICH | 1T4X |
377D | FR3D | 20 | 8 | 1.8 | 8-10-98 | synthetic | '-R(*CP*GP*UP*AP*CP*DG)-3' | R.BISWAS,S.N.MITRA,M.SUNDARALINGAM | |
2AWE | FR3D | 39 | 24 | 2.1 | 2-07-06 | engineered | BASE-TETRAD SWAPPING RESULTS IN DIMERIZATION OF RNA QUADRUPLEXES: IMPLICATIONS FOR FORMATION OF I-MOTIF RNA OCTAPLEX | B.PAN,K.SHI,M.SUNDARALINGAM | |
2GRB | FR3D | 32 | 31 | 1.4 | 11-21-06 | synthetic | CRYSTAL STRUCTURE OF AN RNA QUADRUPLEX CONTAINING INOSINE- TETRAD | B.PAN,K.SHI,M.SUNDARALINGAM | |