PDBID | FR3D analysis | NTs | Pairs | Res | Date | Organism | Description provided by author | Author | Also represents |
3F1H | FR3D | 2998 | 1310 | 3.0 | 12-23-08 | THERMUS THERMOPHILUS,THERMUS THERMOPHILUS | CRYSTAL STRUCTURE OF A TRANSLATION TERMINATION COMPLEX FORMED WITH RELEASE FACTOR RF2. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. | A.KOROSTELEV,H.ASAHARA,L.LANCASTER,M.LAURBERG,A.HIRSCHI, H.F.NOLLER | 2XG2 2Y19 2XTG 3FIN 2Y17 2J03 3D5D 3I9C 2WDJ 3OH5 2V47 3KIR 2WRR 2WDN 2HGU 3F1F 3OHZ 3MRZ 2WDI 2Y0X 2HGJ 3KNO 2WRJ 3PYR 2Y11 2B66 1VSP 3KIT 3KNK 2WRO 3OI3 3PYV 3KIW 3OHK 2XQE 3HUX 2XUX 3PYO 2WH2 2X9U 2V49 3I9E 3D5B 2Y15 1VSA 3I8I 2Y0V 3KNI 2WDL 1YL3 2XG0 3MS1 3OHJ 3PYT 2B9N 3HUZ 2HGQ 2WH4 2Y0Z 3KIY 3OI1 2X9S 2WRL 3I8F 3OH7 3KNM 2B9P 2J01 2Y13 3OI5 |
1S72 | FR3D | 2871 | 1376 | 2.4 | 6-15-04 | HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI | REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION | D.J.KLEIN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ | 1VQK 2QEX 1VQ4 1NJI 1K9M 3CCL 1VQO 1Q86 3CCQ 1M90 3CD6 1VQ8 1KC8 1K73 1Q82 3I55 3CC7 1YJW 1M1K 1KQS 2OTJ 1K8A 1W2B 3CCM 1VQ7 1VQ9 1QVG 1YI2 3I56 3CC4 3G71 1VQN 3CMA 3CCJ 3G4S 1N8R 3CCS 1YHQ 1VQ6 1VQM 2OTL 1FFZ 1JJ2 2QA4 3CCV 1FG0 1YJ9 3CPW 1Q7Y 1QVF 1YIJ 1FFK 3CCR 1Q81 1VQL 3CXC 1VQ5 3CCE 3CC2 1KD1 1VQP 1YIT 3G6E 3CME 3CCU 1YJN |
2ZJR | FR3D | 2808 | 1180 | 2.9 | 6-17-08 | DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS | REFINED NATIVE STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS | J.M.HARMS,D.N.WILSON,F.SCHLUENZEN,S.R.CONNELL,T.STACHELHAUS, Z.ZABOROWSKA,C.M.T.SPAHN,P.FUCINI | 2O43 1JZZ 2AAR 1OND 1J5A 3FWO 2OGM 3DLL 2D3O 2O44 2ZJP 3PIP 1NWX 1K01 1NJO 1P9X 2OGN 1NWY 1Z58 2O45 1NJM 1NJP 2ZJQ 2OGO 1NKW 3JQ4 1JZY 3PIO 1Y69 1XBP 1JZX 1SM1 1NJN 3CF5 |
1FJG | FR3D | 1513 | 690 | 3.0 | 9-25-00 | THERMUS THERMOPHILUS,THERMUS THERMOPHILUS | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN | A.P.CARTER,W.M.CLEMONS JR.,D.E.BRODERSEN,B.T.WIMBERLY, R.J.MORGAN-WARREN,V.RAMAKRISHNAN | 3KNN 2UUC 2WH3 2HGP 1HR0 2Y0Y 2XQD 1I96 3F1G 3FIC 2X9T 2WRI 2OW8 3I8G 2V46 2WRN 3OHD 2XSY 1I95 2Y12 1N34 3HUY 3OI2 2XG1 1YL4 2UUB 2HHH 2VQF 3KNH 1HNZ 2Y16 3I9D 2Y18 3MR8 3OHY 3MS0 1XMO 1I97 3OGE 2UXB 2VQE 3F1E 2WDM 1HNX 2E5L 2B9M 2XFZ 2Y0W 1IBM 3PYQ 2ZM6 2Y10 2WH1 2UXC 1XNR 3KIX 2UUA 2X9R 1N32 2J00 3PYU 3HUW 1FKA 3PYN 2XUY 3OI0 3KIS 3KNL 1IBL 3D5A 2WRK 3OTO 3OI4 2HGR 2HGI 2WDG 3OGY 1XNQ 2B9O 2Y14 1HNW 2WDK 3D5C 2J02 3KIQ 3OHC 2F4V 3KNJ 1N36 2Y0U 2QNH 3I8H 2V48 1XMQ 1I94 1IBK 3I9B 2B64 3KIU 1N33 1J5E 2WRQ 2UXD 3PYS 2WDH 2UU9 |
3G78 | FR3D | 398 | 181 | 2.8 | 2-16-10 | OCEANOBACILLUS IHEYENSIS,synthetic | INSIGHT INTO GROUP II INTRON CATALYSIS FROM REVISED CRYSTAL STRUCTURE | J.WANG | 3EOH 3EOG 3IGI |
3DIR | FR3D | 172 | 81 | 2.9 | 9-16-08 | synthetic | CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO N6-1-IMINOETHYL-L-LYSINE | A.A.SERGANOV | 3DIS 3DIL 3DIZ 3DJ2 3DIM 3DIQ 3DIX 3DIO 3DIG 3DJ0 3DIY |
3D0U | FR3D | 161 | 76 | 2.8 | 7-01-08 | synthetic | CRYSTAL STRUCTURE OF LYSINE RIBOSWITCH BOUND TO LYSINE | A.D.GARST,A.HEROUX,R.P.RAMBO,R.T.BATEY | 3D0X |
2QBZ | FR3D | 153 | 73 | 2.6 | 9-18-07 | synthetic | STRUCTURE OF THE M-BOX RIBOSWITCH APTAMER DOMAIN | C.E.DANN III,W.C.WINKLER | 3PDR |
1GID | FR3D | 316 | 153 | 2.5 | 12-31-96 | SYNTHETIC CONSTRUCT | CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING | J.H.CATE,A.R.GOODING,E.PODELL,K.ZHOU,B.L.GOLDEN,C.E.KUNDROT, T.R.CECH,J.A.DOUDNA | 1L8V 1HR2 2R8S |
1U9S | FR3D | 155 | 73 | 2.9 | 10-26-04 | synthetic | CRYSTAL STRUCTURE OF THE SPECIFICITY DOMAIN OF RIBONUCLEASE P OF THE A-TYPE | A.S.KRASILNIKOV,Y.XIAO,T.PAN,A.MONDRAGON | |
2NZ4 | FR3D | 594 | 238 | 2.5 | 1-16-07 | synthetic,synthetic | STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS CATALYTIC COFACTOR | J.C.COCHRANE | 3G9C 3L3C 3G8S 3G8T 3G96 |
3NDB | FR3D | 136 | 59 | 3.0 | 2-23-11 | METHANOCALDOCOCCUS JANNASCHII DSM 2661 | CRYSTAL STRUCTURE OF A SIGNAL SEQUENCE BOUND TO THE SIGNAL RECOGNITION PARTICLE | T.HAINZL,S.HUANG,E.SAUER-ERIKSSON | |
3HHN | FR3D | 272 | 113 | 3.0 | 11-24-09 | HOMO SAPIENS | CRYSTAL STRUCTURE OF CLASS I LIGASE RIBOZYME SELF-LIGATION PRODUCT, IN COMPLEX WITH U1A RBD | D.M.SHECHNER,R.A.GRANT,S.C.BAGBY,D.P.BARTEL | |
1L9A | FR3D | 125 | 45 | 2.9 | 6-28-02 | synthetic | CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA | C.OUBRIDGE,A.KUGLSTATTER,L.JOVINE,K.NAGAI | 2GO5 1MFQ 1RY1 |
2HO7 | FR3D | 141 | 64 | 2.9 | 9-26-06 | synthetic,synthetic | PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSE-6-PHOSPHATE | D.J.KLEIN,A.R.FERRE-D'AMARE | 3B4A 2H0Z 2H0X 2GCV 2HO6 2GCS 3B4C 2Z74 2Z75 2H0S 3B4B 2H0W |
3F2Q | FR3D | 107 | 49 | 3.0 | 1-27-09 | synthetic | CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN | A.A.SERGANOV,L.HUANG | 3F2Y 3F2T 3F2W 3F30 3F2X |
1LNG | FR3D | 97 | 44 | 2.3 | 6-07-02 | METHANOCALDOCOCCUS JANNASCHII | CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII | T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON | 2V3C 1Z43 |
2GIS | FR3D | 94 | 44 | 2.9 | 7-04-06 | synthetic | STRUCTURE OF THE S-ADENOSYLMETHIONINE RIBOSWITCH MRNA REGULATORY ELEMENT | R.K.MONTANGE,R.T.BATEY | 3GX6 3GX3 3IQR 3GX2 3IQP 3GX7 3IQN 3GX5 |
3ADD | FR3D | 176 | 73 | 2.4 | 7-28-10 | METHANOPYRUS KANDLERI | CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 3) | Y.ITOH,S.CHIBA,S.SEKINE,S.YOKOYAMA | 3ADB |
3CUL | FR3D | 182 | 67 | 2.8 | 6-24-08 | engineered,HOMO SAPIENS | AMINOACYL-TRNA SYNTHETASE RIBOZYME | H.XIAO,H.MURAKAMI,H.SUGA,A.R.FERRE-D'AMARE | 3CUN |
1M5O | FR3D | 224 | 94 | 2.2 | 10-12-02 | synthetic,synthetic | TRANSITION STATE STABILIZATION BY A CATALYTIC RNA | P.B.RUPERT,A.P.MASSEY,S.T.SIGURDSSON,A.R.FERRE-D'AMARE | 1M5V 1M5P 1M5K |
3ADC | FR3D | 180 | 70 | 2.9 | 7-28-10 | METHANOPYRUS KANDLERI | CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 2) | Y.ITOH,S.CHIBA,S.SEKINE,S.YOKOYAMA | |
3MUR | FR3D | 91 | 38 | 3.0 | 8-25-10 | synthetic | CRYSTAL STRUCTURE OF THE C92U MUTANT C-DI-GMP RIBOSWITH BOUND TO C-DI- GMP | S.A.STROBEL,K.D.SMITH | 3MXH 3MUM 3IRW 3MUV 3MUT |
1DUH | FR3D | 88 | 38 | 2.7 | 5-08-00 | synthetic | CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA | L.JOVINE,T.HAINZL,C.OUBRIDGE,W.G.SCOTT,J.LI,T.K.SIXMA, A.WONACOTT,T.SKARZYNSKI,K.NAGAI | |
3OWZ | FR3D | 168 | 79 | 3.0 | 12-29-10 | synthetic,synthetic | CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, SOAKED IN IRIDIUM | L.HUANG,A.SERGANOV,D.J.PATEL | 3OXB 3OXJ 3OXM 3OWI 3OWW 3OX0 3OXE 3OXD |
2ZZM | FR3D | 84 | 27 | 2.6 | 9-15-09 | synthetic | THE COMPLEX STRUCTURE OF ATRM5 AND TRNALEU | S.GOTO-ITO,T.ITO,S.YOKOYAMA | |
3HL2 | FR3D | 82 | 31 | 2.8 | 10-06-09 | HOMO SAPIENS | THE CRYSTAL STRUCTURE OF THE HUMAN SEPSECS-TRNASEC COMPLEX | S.PALIOURA,T.A.STEITZ,D.SOLL,M SIMONOVIC | 3A3A |
3AM1 | FR3D | 81 | 34 | 2.4 | 12-29-10 | synthetic | CRYSTAL STRUCTURE OF PROTEIN | Y.ARAISO,R.ISHITANI,O.NUREKI | |
2GDI | FR3D | 156 | 74 | 2.0 | 7-04-06 | synthetic | CRYSTAL STRUCTURE OF THIAMINE PYROPHOSPHATE-SPECIFIC RIBOSWITCH IN COMPLEX WITH THIAMINE PYROPHOSPHATE | A.SERGANOV | |
2BTE | FR3D | 156 | 69 | 2.9 | 9-15-05 | THERMUS THERMOPHILUS | THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION AND A POST-TRANSFER EDITING SUBSTRATE ANALOGUE | S.CUSACK,M.TUKALO,A.YAREMCHUK,R.FUKUNAGA,S.YOKOYAMA | 2V0G 2BYT |
3D2V | FR3D | 154 | 71 | 2.0 | 7-01-08 | ARABIDOPSIS THALIANA | STRUCTURE OF THE EUKARYOTIC TPP-SPECIFIC RIBOSWITCH BOUND TO THE ANTIBACTERIAL COMPOUND PYRITHIAMINE PYROPHOSPHATE | S.THORE,C.FRICK,N.BAN | 2CKY 3D2X 3D2G |
1H3E | FR3D | 77 | 31 | 2.9 | 10-27-02 | THERMUS THERMOPHILUS | TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH WILD-TYPE TRNATYR(GUA) AND WITH ATP AND TYROSINOL | S.CUSACK,A.YAREMCHUK,I.KRIKLIVYI,M.TUKALO | |
2HOJ | FR3D | 74 | 33 | 2.5 | 9-19-06 | synthetic | CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO THIAMINE PYROPHOSPHATE, MANGANESE IONS | T.E.EDWARDS,A.R.FERRE-D'AMARE | 2HOO 2HOM 2HOL 2HOK |
2CV1 | FR3D | 150 | 65 | 2.4 | 9-05-06 | synthetic | GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU), ATP, AND AN ANALOG OF L-GLUTAMATE: A QUATERNARY COMPLEX | S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) | 2DXI 2CV2 1G59 1N77 1N78 2CV0 |
2ZUE | FR3D | 75 | 29 | 2.0 | 8-18-09 | synthetic | CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG) AND AN ATP ANALOG (ANP) | M.KONNO,T.SUMIDA,E.UCHIKAWA,Y.MORI,T.YANAGISAWA,S.SEKINE, S.YOKOYAMA | 2ZUF |
2CT8 | FR3D | 148 | 53 | 2.7 | 9-20-05 | synthetic | CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET) AND METHIONYL-ADENYLATE ANOLOGUE | K.NAKANISHI,Y.OGISO,T.NAKAMA,S.FUKAI,O.NUREKI,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) | 2CSX |
2DR2 | FR3D | 75 | 20 | 3.0 | 7-11-06 | BOS TAURUS | STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN COMPLEX WITH TRNA(TRP) | N.SHEN,L.GUO,B.YANG,Y.JIN,J.DING | 2AKE |
1QU2 | FR3D | 75 | 31 | 2.2 | 8-31-99 | STAPHYLOCOCCUS AUREUS | INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN | L.F.SILVIAN,J.WANG,T.A.STEITZ | 1QU3 1FFY |
1GAX | FR3D | 150 | 60 | 2.9 | 12-06-00 | synthetic | CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE | S.FUKAI,O.NUREKI,S.SEKINE,A.SHIMADA,J.TAO,D.G.VASSYLYEV, S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) | 1IVS |
1O0C | FR3D | 74 | 31 | 2.7 | 4-15-03 | synthetic | CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE | T.L.BULLOCK,J.J.PERONA | 1QRS 1GTS 2RE8 1ZJW 1QRT 1EXD 1EUQ 1EUY 1QTQ 1QRU 1GTR 1O0B 2RD2 |
1VBY | FR3D | 73 | 30 | 2.9 | 5-18-04 | synthetic | CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, AND MN2+ BOUND | A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA | 1SJ4 1SJ3 1VC7 1VC6 1VC5 1VBX 1VC0 1SJF 1DRZ 2OIH 1VBZ 2OJ3 1CX0 |
1J1U | FR3D | 74 | 31 | 1.9 | 6-03-03 | synthetic | CRYSTAL STRUCTURE OF ARCHAEAL TYROSYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(TYR) AND L-TYROSINE | T.KOBAYASHI,O.NUREKI,R.ISHITANI,M.TUKALO,S.CUSACK, K.SAKAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) | |
3FOZ | FR3D | 143 | 58 | 2.5 | 1-20-09 | synthetic,synthetic | STRUCTURE OF E. COLI ISOPENTENYL-TRNA TRANSFERASE IN COMPLEX WITH E. COLI TRNA(PHE) | E.SEIF,B.M.HALLBERG | 2ZM5 2ZXU |
1U0B | FR3D | 74 | 30 | 2.3 | 11-23-04 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF CYSTEINYL-TRNA SYNTHETASE BINARY COMPLEX WITH TRNACYS | S.HAUENSTEIN,C.M.ZHANG,Y.M.HOU,J.J.PERONA | |
3AKZ | FR3D | 296 | 112 | 2.9 | 9-29-10 | synthetic | CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA NONDISCRIMINATING GLUTAMYL- TRNA SYNTHETASE IN COMPLEX WITH TRNAGLN AND A GLUTAMYL-AMP ANALOG | T.ITO,S.YOKOYAMA | 3AL0 |
1I9V | FR3D | 73 | 29 | 2.6 | 6-04-01 | SACCHAROMYCES CEREVISIAE | CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX | N.E.MIKKELSEN,K.JOHANSSON,A.VIRTANEN,L.A.KIRSEBOM | 1ZO3 1ZO1 |
3L0U | FR3D | 73 | 30 | 3.0 | 3-16-10 | synthetic | THE CRYSTAL STRUCTURE OF UNMODIFIED TRNAPHE FROM ESCHERICHIA COLI | R.T.BYRNE,A.L.KONEVEGA,M.V.RODNINA,A.A.ANTSON | |
2FMT | FR3D | 144 | 44 | 2.8 | 7-29-99 | synthetic | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL- METHIONYL-TRNAFMET | E.SCHMITT,Y.MECHULAM,S.BLANQUET | 3CW5 3CW6 3DEG |
2AZX | FR3D | 144 | 60 | 2.8 | 8-01-06 | synthetic | CHARGED AND UNCHARGED TRNAS ADOPT DISTINCT CONFORMATIONS WHEN COMPLEXED WITH HUMAN TRYPTOPHANYL-TRNA SYNTHETASE | X.L.YANG,F.J.OTERO,K.L.EWALT,J.LIU,M.A.SWAIRJO,C.KOHRER, U.L.RAJBHANDARY,R.J.SKENE,D.E.MCREE,P.SCHIMMEL | |
1Y26 | FR3D | 71 | 35 | 2.1 | 12-28-04 | VIBRIO VULNIFICUS | A-RIBOSWITCH-ADENINE COMPLEX | A.SERGANOV,Y.R.YUAN,D.J.PATEL | |
2DU3 | FR3D | 71 | 26 | 2.6 | 3-13-07 | synthetic | CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS AND O-PHOSPHOSERINE | R.FUKUNAGA | 2DU4 2DU5 2DU6 |
3KFU | FR3D | 278 | 110 | 3.0 | 8-25-10 | THERMUS THERMOPHILUS | CRYSTAL STRUCTURE OF THE TRANSAMIDOSOME | M.BLAISE,M.BAILLY,M.FRECHIN,S.THIRUP,H.D.BECKER,D.KERN | |
2ZZN | FR3D | 142 | 58 | 3.0 | 9-15-09 | synthetic | THE COMPLEX STRUCTURE OF ATRM5 AND TRNACYS | S.GOTO-ITO,T.ITO,S.YOKOYAMA | |
2OIU | FR3D | 142 | 62 | 2.6 | 3-13-07 | synthetic | L1 RIBOZYME LIGASE CIRCULAR ADDUCT | M.P ROBERTSON,W.G.SCOTT | |
3LA5 | FR3D | 71 | 35 | 1.7 | 1-26-10 | BACILLUS SUBTILIS | X-RAY CRYSTAL STRUCTURE OF MC6 RNA RIBOSWITCH BOUND TO AZACYTOSINE | M.S.DUNSTAN,D.LEYS | |
1KXK | FR3D | 70 | 28 | 3.0 | 3-22-02 | synthetic | CRYSTAL STRUCTURE OF A RNA MOLECULE CONTAINING DOMAIN 5 AND 6 OF THE YEAST AI5G GROUP II SELF-SPLICING INTRON | L.ZHANG,J.A.DOUDNA | |
3IVN | FR3D | 138 | 60 | 2.8 | 1-19-10 | BACILLUS SUBTILIS | STRUCTURE OF THE U65C MUTANT A-RIBOSWITCH APTAMER FROM THE BACILLUS SUBTILIS PBUE OPERON | V.DELFOSSE,P.DAGENAIS,D.CHAUSSE,G.DI TOMASSO,P.LEGAULT | |
3EPH | FR3D | 138 | 48 | 3.0 | 11-04-08 | synthetic | CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM | R.H.HUANG,C.ZHOU | 3EPJ 3EPL 3EPK |
1QF6 | FR3D | 69 | 29 | 2.9 | 5-06-99 | ESCHERICHIA COLI | STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE COMPLEXED WITH ITS COGNATE TRNA | R.SANKARANARAYANAN,A.C.DOCK-BREGEON,B.REES,D.MORAS | |
3MOJ | FR3D | 69 | 26 | 2.9 | 8-04-10 | ESCHERICHIA COLI | STRUCTURE OF THE RNA BINDING DOMAIN OF THE BACILLUS SUBTILIS YXIN PROTEIN COMPLEXED WITH A FRAGMENT OF 23S RIBOSOMAL RNA | J.W.HARDIN,Y.HU,D.B.MCKAY | |
1C0A | FR3D | 68 | 25 | 2.4 | 11-23-99 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX | S.EILER,A.-C.DOCK-BREGEON,L.MOULINIER,J.-C.THIERRY,D.MORAS | |
2QUS | FR3D | 136 | 48 | 2.4 | 7-15-08 | synthetic | HAMMERHEAD RIBOZYME G12A MUTANT PRE-CLEAVAGE | Y.I.CHI,W.G.SCOTT,S.H.KIM | |
1IL2 | FR3D | 129 | 56 | 2.6 | 9-28-01 | SACCHAROMYCES CEREVISIAE | CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE:YEAST TRNAASP:ASPARTYL-ADENYLATE COMPLEX | L.MOULINIER,S.EILER,G.ERIANI,J.GANGLOFF,J.C.THIERRY, K.GABRIEL,W.H.MCCLAIN,D.MORAS | 1ASZ 1ASY |
3FO4 | FR3D | 63 | 32 | 1.9 | 6-23-09 | synthetic | CRYSTAL STRUCTURE OF GUANINE RIBOSWITCH C74U MUTANT BOUND TO 6-CHLOROGUANINE | S.D.GILBERT,R.T.BATEY | 2EES 2EEW 3FO6 2XNZ 1Y27 3DS7 2EET 3G4M 3GAO 2G9C 2B57 3GOT 3GES 2EEU 3GOG 1U8D 2EEV 3GER |
1B23 | FR3D | 66 | 23 | 2.6 | 12-07-98 | ESCHERICHIA COLI | E. COLI CYSTEINYL-TRNA AND T. AQUATICUS ELONGATION FACTOR EF-TU:GTP TERNARY COMPLEX | P.NISSEN,M.KJELDGAARD,S.THIRUP,J.NYBORG | |
2TRA | FR3D | 65 | 28 | 3.0 | 11-06-87 | SACCHAROMYCES CEREVISIAE | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | E.WESTHOF,P.DUMAS,D.MORAS | 3TRA |
1H4S | FR3D | 65 | 26 | 2.9 | 6-18-01 | THERMUS THERMOPHILUS | PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG) AND A PROLYL-ADENYLATE ANALOGUE | A.YAREMCHUK,M.TUKALO,S.CUSACK | 1H4Q |
3NKB | FR3D | 70 | 31 | 1.9 | 9-01-10 | HOMO SAPIENS | A 1.9A CRYSTAL STRUCTURE OF THE HDV RIBOZYME PRECLEAVAGE SUGGESTS BOTH LEWIS ACID AND GENERAL ACID MECHANISMS CONTRIBUTE TO PHOSPHODIESTER CLEAVAGE | J.-H.CHEN,R.YAJIMA,D.M.CHADALAVADA,E.CHASE,P.C.BEVILACQUA,B.L.GOLDEN | |
3EGZ | FR3D | 64 | 20 | 2.2 | 10-28-08 | synthetic | CRYSTAL STRUCTURE OF AN IN VITRO EVOLVED TETRACYCLINE APTAMER AND ARTIFICIAL RIBOSWITCH | H.XIAO,T.E.EDWARDS,A.R.FERRE-D'AMARE | |
1YFG | FR3D | 64 | 23 | 3.0 | 9-03-97 | SACCHAROMYCES CEREVISIAE | YEAST INITIATOR TRNA | R.BASAVAPPA,P.B.SIGLER | |
1F7V | FR3D | 60 | 22 | 2.9 | 6-27-01 | synthetic | CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNAARG | B.DELAGOUTTE,D.MORAS,J.CAVARELLI | 1F7U |
1EFW | FR3D | 126 | 50 | 3.0 | 6-19-00 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF ASPARTYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED TO TRNAASP FROM ESCHERICHIA COLI | C.BRIAND,A.POTERSZMAN,S.EILER,G.WEBSTER,J.-C.THIERRY,D.MORAS | |
1EHZ | FR3D | 62 | 23 | 1.9 | 10-02-00 | synthetic | THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA AT 1.93 A RESOLUTION | H.SHI,P.B.MOORE | 1ML5 1OB2 1MJ1 1FCW 1TN2 6TNA 4TNA 1EVV 1OB5 1SZ1 1TRA 1TTT 4TRA |
1SER | FR3D | 61 | 25 | 2.9 | 4-30-94 | THERMUS THERMOPHILUS | THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER | S.BIOU,V.CUSACK,A.YAREMCHUK,M.TUKALO | |
3HJW | FR3D | 70 | 30 | 2.4 | 6-23-09 | synthetic,synthetic | STRUCTURE OF A FUNCTIONAL RIBONUCLEOPROTEIN PSEUDOURIDINE SYNTHASE BOUND TO A SUBSTRATE RNA | B.LIANG,J.ZHOU,E.KAHEN,R.M.TERNS,M.P.TERNS,H.LI | 3LWR 3LWV 3LWQ 3LWP 3LWO |
1QA6 | FR3D | 116 | 54 | 2.8 | 5-25-99 | synthetic | CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX | G.L.CONN,D.E.DRAPER,E.E.LATTMAN,A.G.GITTIS | 1C04 1Y39 1HC8 |
1MMS | FR3D | 116 | 52 | 2.6 | 4-17-00 | synthetic | CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN L11-RNA COMPLEX | B.T.WIMBERLY,R.GUYMON,J.P.MCCUTCHEON,S.W.WHITE, V.RAMAKRISHNAN | 2JQ7 1OLN |
3HAX | FR3D | 71 | 31 | 2.1 | 6-23-09 | synthetic,synthetic | CRYSTAL STRUCTURE OF A SUBSTRATE-BOUND GAR1-MINUS H/ACA RNP FROM PYROCOCCUS FURIOSUS | K.YE | |
2QUW | FR3D | 67 | 25 | 2.2 | 7-15-08 | synthetic,synthetic | HAMMERHEAD RIBOZYME G12A MUTANT AFTER CLEAVAGE | Y.I.CHI,W.G.SCOTT,S.H.KIM | |
1F7Y | FR3D | 57 | 24 | 2.8 | 11-22-00 | synthetic | THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY | E.ENNIFAR,A.NIKOULINE,A.SERGANOV,S.TISHCHENKO,N.NEVSKAYA, M.GARBER,B.EHRESMANN,C.EHRESMANN,S.NIKONOV,P.DUMAS | 1DK1 1KUQ |
2HVY | FR3D | 57 | 20 | 2.3 | 9-12-06 | synthetic | CRYSTAL STRUCTURE OF AN H/ACA BOX RNP FROM PYROCOCCUS FURIOSUS | K.YE | |
2DLC | FR3D | 57 | 20 | 2.4 | 6-12-07 | SACCHAROMYCES CEREVISIAE | CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF YEAST TYROSYL- TRNA SYNTHETASE | M.TSUNODA,Y.KUSAKABE,N.TANAKA,K.T.NAKAMURA | |
3F4H | FR3D | 109 | 49 | 3.0 | 1-27-09 | synthetic,synthetic | CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO ROSEOFLAVIN | A.A.SERGANOV,L.HUANG | 3F4G 3F4E |
1MZP | FR3D | 55 | 25 | 2.6 | 1-21-03 | synthetic | STRUCTURE OF THE L1 PROTUBERANCE IN THE RIBOSOME | A.NIKULIN,I.ELISEIKINA,S.TISHCHENKO,N.NEVSKAYA,N.DAVYDOVA, O.PLATONOVA,W.PIENDL,M.SELMER,A.LILJAS,R.ZIMMERMANN, M.GARBER,S.NIKONOV | |
2FK6 | FR3D | 53 | 20 | 2.9 | 3-21-06 | synthetic | CRYSTAL STRUCTURE OF RNASE Z/TRNA(THR) COMPLEX | I.LI DE LA SIERRA-GALLAY,N.MATHY,O.PELLEGRINI,C.CONDON | |
3E5C | FR3D | 52 | 21 | 2.2 | 10-07-08 | synthetic | CRYSTAL STRUCTURE OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SAM | C.LU | 3E5E 3E5F |
2QWY | FR3D | 156 | 62 | 2.8 | 1-22-08 | synthetic | SAM-II RIBOSWITCH BOUND TO S-ADENOSYLMETHIONINE | S.D.GILBERT,R.P.RAMBO,D.VAN TYNE,R.T.BATEY | |
3NPN | FR3D | 50 | 18 | 2.8 | 10-06-10 | RALSTONIA SOLANACEARUM | STRUCTURE OF THE S-ADENOSYLHOMOCYSTEINE RIBOSWITCH AT 3.0A | F.E.REYES,A.E.EDWARDS,R.T.BATEY | 3NPQ |
2PXV | FR3D | 49 | 22 | 2.0 | 8-07-07 | synthetic | VARIANT 6 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE | A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT | 2PXK 2PXD 2PXU 2PXQ 2PXF 2PXB 1DUL 2PXT 2PXP 3LQX 2PXE 2PXL 1HQ1 |
2VPL | FR3D | 94 | 38 | 2.3 | 9-23-08 | METHANOCALDOCOCCUS JANNASCHII | THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII | V.KLJASHTORNY,S.TISHCHENKO,N.NEVSKAYA,S.NIKONOV,M.GARBER | |
1S03 | FR3D | 94 | 42 | 2.7 | 5-25-04 | synthetic | THE STRUCTURE OF A RIBOSOMAL PROTEIN S8/SPC OPERON MRNA COMPLEX | H.J.MERIANOS,J.WANG,P.B.MOORE | |
1XJR | FR3D | 46 | 20 | 2.7 | 2-01-05 | synthetic | THE STRUCTURE OF A RIGOROUSLY CONSERVED RNA ELEMENT WITHIN THE SARS VIRUS GENOME | M.P.ROBERTSON,H.IGEL,R.BAERTSCH,D.HAUSSLER,M.ARES JR., W.G.SCOTT | |
3IAB | FR3D | 46 | 13 | 2.7 | 1-26-10 | synthetic | CRYSTAL STRUCTURE OF RNASE P /RNASE MRP PROTEINS POP6, POP7 IN A COMPLEX WITH THE P3 DOMAIN OF RNASE MRP RNA | A.PEREDERINA,O.A.ESAKOVA,C.QUAN,E.KHANOVA,A.S.KRASILNIKOV | |
2NUE | FR3D | 46 | 21 | 2.9 | 11-20-07 | synthetic | CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.9-ANGSTROM RESOLUTION | J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI | |
1G1X | FR3D | 84 | 32 | 2.6 | 10-30-00 | synthetic,synthetic | STRUCTURE OF RIBOSOMAL PROTEINS S15, S6, S18, AND 16S RIBOSOMAL RNA | S.C.AGALAROV,G.S.PRASAD,P.M.FUNKE,C.D.STOUT,J.R.WILLIAMSON | |
2OEU | FR3D | 59 | 24 | 2.0 | 2-20-07 | synthetic,synthetic | FULL-LENGTH HAMMERHEAD RIBOZYME WITH MN(II) BOUND | M.MARTICK,W.G.SCOTT | 2GOZ |
3BNT | FR3D | 42 | 18 | 2.3 | 6-24-08 | synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE IN THE PRESENCE OF [CO(NH3)6]CL3 (A1555G MUTANT, BR-DERIVATIVE) | J.KONDO,E.WESTHOF | |
1KH6 | FR3D | 42 | 16 | 2.9 | 4-26-02 | synthetic | CRYSTAL STRUCTURE OF AN RNA TERTIARY DOMAIN ESSENTIAL TO HCV IRES-MEDIATED TRANSLATION INITIATION. | J.S.KIEFT,K.ZHOU,A.GRECH,R JUBIN,J.A.DOUDNA | |
3P22 | FR3D | 190 | 104 | 2.5 | 12-08-10 | synthetic,synthetic | CRYSTAL STRUCTURE OF THE ENE, A VIRAL RNA STABILITY ELEMENT, IN COMPLEX WITH A9 RNA | R.M.MITTON-FRY,S.J.DEGREGORIO,J.WANG,T.A.STEITZ,J.A.STEITZ | |
2HW8 | FR3D | 36 | 17 | 2.1 | 12-19-06 | synthetic | STRUCTURE OF RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 RESOLUTION. | S.TISHCHENKO,E.NIKONOVA,A.NIKULIN,N.NEVSKAYA,S.VOLCHKOV, W.PIENDL,M.GARBER,S.NIKONOV | 1ZHO |
2ZY6 | FR3D | 38 | 12 | 1.8 | 6-30-09 | synthetic | CRYSTAL STRUCTURE OF A TRUNCATED TRNA, TPHE39A | I.TANAKA,M.YAO,Y.TANAKA,Y.KITAGO,S.YMAGATA | |
1I6U | FR3D | 74 | 37 | 2.6 | 8-03-01 | synthetic | RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII | S.TISHCHENKO,A.NIKULIN,N.FOMENKOVA,N.NEVSKAYA,O.NIKONOV, P.DUMAS,H.MOINE,B.EHRESMANN,C.EHRESMANN,W.PIENDL,V.LAMZIN, M.GARBER,S.NIKONOV | |
3GS5 | FR3D | 61 | 28 | 2.8 | 4-21-09 | synthetic,synthetic | AN ALL-RNA HAIRPIN RIBOZYME A38N1DA VARIANT WITH A PRODUCT MIMIC SUBSTRATE STRAND | R.C.SPITALE,R.VOLPINI,M.G.HELLER,J.KRUCINSKA,G.CRISTALLI, J.E.WEDEKIND | |
1KFO | FR3D | 36 | 16 | 1.6 | 12-07-01 | synthetic | CRYSTAL STRUCTURE OF AN RNA HELIX RECOGNIZED BY A ZINC- FINGER PROTEIN: AN 18 BASE PAIR DUPLEX AT 1.6 RESOLUTION | S.LIMA,J.HILDENBRAND,A.KOROSTELEV,S.HATTMAN,H.LI | |
2DR8 | FR3D | 33 | 13 | 2.5 | 11-14-06 | synthetic | COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDC AND CTP | K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI | 2DRB 2ZH3 2ZH1 2ZH7 2ZH2 2DR7 2ZH6 2ZH5 1VFG 2DR5 2ZHA 2DVI 2DR9 2ZH4 2ZHB 2ZH9 2ZH8 2DRA |
2XDB | FR3D | 35 | 12 | 2.5 | 1-12-11 | PECTOBACTERIUM ATROSEPTICUM | A PROCESSED NON-CODING RNA REGULATES A BACTERIAL ANTIVIRAL SYSTEM | T.R.BLOWER,X.Y.PEI,F.L.SHORT,P.C.FINERAN,D.P.HUMPHREYS,B.F.LUISI, G.P.C.SALMOND | 2XDD 2XD0 |
3OVA | FR3D | 34 | 13 | 2.0 | 12-01-10 | synthetic | HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE IN POSITION 76 OF TRNA | B.C.PAN,Y.XIONG,T.A.STEITZ | 3OV7 3OUY 3OVB 3OVS |
1ET4 | FR3D | 175 | 75 | 2.3 | 11-13-00 | synthetic | CRYSTAL STRUCTURE OF A VITAMIN B12 BINDING RNA APTAMER WITH LIGAND AT 2.3 A | D.SUSSMAN,C.WILSON | 1DDY |
1HMH | FR3D | 102 | 30 | 2.6 | 12-07-95 | engineered | THREE-DIMENSIONAL STRUCTURE OF A HAMMERHEAD RIBOZYME | H.W.PLEY,K.M.FLAHERTY,D.B.MCKAY | |
1YLS | FR3D | 86 | 34 | 3.0 | 2-22-05 | synthetic,synthetic | CRYSTAL STRUCTURE OF SELENIUM-MODIFIED DIELS-ALDER RIBOZYME COMPLEXED WITH THE PRODUCT OF THE REACTION BETWEEN N- PENTYLMALEIMIDE AND COVALENTLY ATTACHED 9- HYDROXYMETHYLANTHRACENE | A.SERGANOV,S.KEIPER,L.MALININA,V.TERESHKO,E.SKRIPKIN, C.HOBARTNER,A.POLONSKAIA,A.T.PHAN,R.WOMBACHER,R.MICURA, Z.DAUTER,A.JASCHKE,D.J.PATEL | 1YKV 1YKQ |
1MJI | FR3D | 68 | 28 | 2.5 | 1-21-03 | ESCHERICHIA COLI | DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX | A.PEREDERINA,N.NEVSKAYA,O.NIKONOV,A.NIKULIN,P.DUMAS,M.YAO, I.TANAKA,M.GARBER,G.GONGADZE,S.NIKONOV | |
2OZB | FR3D | 33 | 13 | 2.6 | 3-20-07 | synthetic | STRUCTURE OF A HUMAN PRP31-15.5K-U4 SNRNA COMPLEX | S.LIU,R.LUEHRMANN,M.C.WAHL | |
1F1T | FR3D | 33 | 14 | 2.8 | 9-04-00 | synthetic | CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE | C.BAUGH,D.GRATE,C.WILSON | |
3GCA | FR3D | 33 | 15 | 2.8 | 3-03-09 | synthetic | THE STRUCTURAL BASIS FOR RECOGNITION OF THE PREQ0 METABOLITE BY AN UNUSUALLY SMALL RIBOSWITCH APTAMER DOMAIN | R.C.SPITALE,J.E.WEDEKIND | |
3CZW | FR3D | 28 | 14 | 1.4 | 9-09-08 | synthetic | X-RAY STRUCTURES OF THE (GUGGUCUGAUGAGGCC) RNA DUPLEX | W.RYPNIEWSKI,D.A.ADAMIAK,J.MILECKI,R.W.ADAMIAK | 3D0M |
1JBR | FR3D | 61 | 26 | 2.1 | 10-26-01 | synthetic,synthetic,synthetic | CRYSTAL STRUCTURE OF THE RIBOTOXIN RESTRICTOCIN AND A 31- MER SRD RNA INHIBITOR | X.YANG,T.GERCZEI,L.GLOVER,C.C.CORRELL | 1JBT |
3FU2 | FR3D | 93 | 48 | 2.9 | 3-03-09 | synthetic | COCRYSTAL STRUCTURE OF A CLASS-I PREQ1 RIBOSWITCH | D.J.KLEIN,T.E.EDWARDS,A.R.FERRE-D'AMARE | 3K1V |
364D | FR3D | 59 | 24 | 3.0 | 1-02-98 | ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI | .0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA | C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ | 357D |
2IPY | FR3D | 60 | 24 | 2.8 | 1-09-07 | synthetic | CRYSTAL STRUCTURE OF IRON REGULATORY PROTEIN 1 IN COMPLEX WITH FERRITIN H IRE-RNA | W.E.WALDEN,A.I.SELEZNEVA,J.DUPUY,A.VOLBEDA,J.C.FONTECILLA- CAMPS,E.C.THEIL,K.VOLZ | |
2BH2 | FR3D | 58 | 10 | 2.1 | 3-30-05 | ESCHERICHIA COLI | CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SUBSTRATE AND S-ADENOSYLHOMOCYSTEINE. | T.T.LEE,S.AGARWALLA,R.M.STROUD | |
3B91 | FR3D | 60 | 29 | 2.8 | 8-12-08 | synthetic,synthetic,synthetic | MINIMALLY HINGED HAIRPIN RIBOZYME INCORPORATES ADE38(2AP) AND 2',5'-PHOSPHODIESTER LINKAGE MUTATIONS AT THE ACTIVE SITE | C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND | 3B5S 3BBI 3B5F 3CQS 3B5A 3CR1 3I2S 3B58 3I2R 3BBK 3I2Q 3BBM 3I2U |
3B31 | FR3D | 43 | 16 | 2.4 | 12-25-07 | synthetic,synthetic | CRYSTAL STRUCTURE OF DOMAIN III OF THE CRICKET PARALYSIS VIRUS IRES RNA | J.S.KIEFT,D.A.COSTANTINO,J.S.PFINGSTEN,R.P.RAMBO | 3MJA 3MJ3 3MJB |
1OOA | FR3D | 58 | 18 | 2.5 | 7-22-03 | synthetic | CRYSTAL STRUCTURE OF NF-KB(P50)2 COMPLEXED TO A HIGH- AFFINITY RNA APTAMER | D.B.HUANG,D.VU,L.A.CASSIDAY,J.M.ZIMMERMAN,L.J.MAHER III, G.GHOSH | |
1Q96 | FR3D | 81 | 37 | 1.8 | 11-25-03 | synthetic | CRYSTAL STRUCTURE OF A MUTANT OF THE SARCIN/RICIN DOMAIN FROM RAT 28S RRNA | C.C.CORRELL,J.BENEKEN,M.J.PLANTINGA,M.LUBBERS,Y.L.CHAN | 1Q93 430D |
2NUF | FR3D | 56 | 26 | 2.5 | 11-20-07 | synthetic | CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.5-ANGSTROM RESOLUTION | J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI | |
2EZ6 | FR3D | 56 | 26 | 2.0 | 2-07-06 | synthetic | CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS RNASE III (D44N) COMPLEXED WITH PRODUCT OF DOUBLE-STRANDED RNA PROCESSING | J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI | |
3O7V | FR3D | 26 | 12 | 2.1 | 1-12-11 | synthetic | CRYSTAL STRUCTURE OF HUMAN HIWI1 (V361M) PAZ DOMAIN (RESIDUES 277-399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OCH3 AT ITS 3'-END | Y.TIAN,D.K.SIMANSHU,J.-B.MA,D.J.PATEL | 3O3I 3O6E |
1D4R | FR3D | 54 | 22 | 2.0 | 12-02-99 | synthetic,synthetic | -MER FRAGMENT OF HUMAN SRP RNA HELIX 6 | K.WILD,O.WEICHENRIEDER,G.A.LEONARD,S.CUSACK | |
3DVZ | FR3D | 27 | 10 | 1.0 | 3-24-09 | synthetic | CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA | V.OLIERIC,U.RIEDER,K.LANG,A.SERGANOV,C.SCHULZE-BRIESE,R.MICURA, P.DUMAS,E.ENNIFAR | 483D 3DW7 1Q9A 480D 3DW6 3DW4 3DW5 1MSY |
1L2X | FR3D | 27 | 14 | 1.2 | 3-22-02 | synthetic | ATOMIC RESOLUTION CRYSTAL STRUCTURE OF A VIRAL RNA PSEUDOKNOT | M.EGLI,G.MINASOV,L.SU,A.RICH | 437D 1L3D |
1XOK | FR3D | 36 | 13 | 3.0 | 1-04-05 | synthetic,synthetic | CRYSTAL STRUCTURE OF ALFALFA MOSAIC VIRUS RNA 3'UTR IN COMPLEX WITH COAT PROTEIN N TERMINAL PEPTIDE | L.M.GUOGAS,D.J.FILMAN,J.M.HOGLE,L.GEHRKE | |
1JID | FR3D | 26 | 10 | 1.8 | 10-19-01 | synthetic | HUMAN SRP19 IN COMPLEX WITH HELIX 6 OF HUMAN SRP RNA | K.WILD,I.SINNING,S.CUSACK | 1L1W |
413D | FR3D | 26 | 12 | 1.8 | 7-10-98 | synthetic | A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC) | Y.TANAKA,S.FUJII,H.HIROAKI,T.SAKATA,T.TANAKA,S.UESUGI,K.- I.TOMITA,Y.KYOGOKU | |
2RFK | FR3D | 61 | 24 | 2.9 | 2-05-08 | PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS | SUBSTRATE RNA POSITIONING IN THE ARCHAEAL H/ACA RIBONUCLEOPROTEIN COMPLEX | B.LIANG,S.XUE,R.M.TERNS,M.P.TERNS,H.LI,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) | 3HJY |
2A43 | FR3D | 26 | 13 | 1.3 | 9-27-05 | synthetic | CRYSTAL STRUCTURE OF A LUTEOVIRAL RNA PSEUDOKNOT AND MODEL FOR A MINIMAL RIBOSOMAL FRAMESHIFTING MOTIF | P.S.PALLAN,W.S.MARSHALL,J.HARP,F.C.JEWETT III,Z.WAWRZAK, B.A.BROWN II,A.RICH,M.EGLI | |
359D | FR3D | 41 | 17 | 2.9 | 11-07-97 | synthetic,synthetic | INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) | A.L.FEIG,W.G.SCOTT,O.C.UHLENBECK | 379D 299D 1MME 1NYI 301D 488D 1Q29 300D |
2QUX | FR3D | 150 | 54 | 2.4 | 12-18-07 | PSEUDOMONAS PHAGE PP7 | PP7 COAT PROTEIN DIMER IN COMPLEX WITH RNA HAIRPIN | J.A.CHAO | |
283D | FR3D | 24 | 12 | 2.3 | 9-30-96 | engineered | A CURVED RNA HELIX INCORPORATING AN INTERNAL LOOP WITH G-A AND A-A NON-WATSON-CRICK BASE PAIRING | K.J.BAEYENS,H.L.DE BONDT,A.PARDI,S.R.HOLBROOK | |
3MIJ | FR3D | 24 | 12 | 2.6 | 2-16-11 | synthetic | CRYSTAL STRUCTURE OF A TELOMERIC RNA G-QUADRUPLEX COMPLEXED WITH AN ACRIDINE-BASED LIGAND. | G.W.COLLIE,S.NEIDLE,G.N.PARKINSON | |
2Q1R | FR3D | 24 | 12 | 1.1 | 10-30-07 | engineered | CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGCGAAUUAGCG, WITH A G-A MISMATCH. | F.LI,P.S.PALLAN | |
1A9N | FR3D | 48 | 12 | 2.4 | 9-23-98 | HOMO SAPIENS | CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B''-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUCLEAR RNA | S.R.PRICE,P.R.EVANS,K.NAGAI | |
2NOK | FR3D | 88 | 35 | 3.0 | 2-13-07 | synthetic,synthetic | CRYSTAL STRUCTURE OF AN RNA DOMAIN FROM HEPATITIS C VIRUS. | S.M.DIBROV,H.JOHNSTON-COS,Y.H.WENG | 2PN3 2PN4 |
255D | FR3D | 24 | 12 | 2.0 | 2-07-95 | synthetic | CRYSTAL STRUCTURE OF AN RNA DOUBLE HELIX INCORPORATING A TRACK OF NON-WATSON-CRICK BASE PAIRS | S.R.HOLBROOK,C.CHEONG,I.TINOCO JR,S.-H.KIM | |
2ANN | FR3D | 23 | 6 | 2.3 | 10-24-06 | synthetic | CRYSTAL STRUCTURE (I) OF NOVA-1 KH1/KH2 DOMAIN TANDEM WITH 25 NT RNA HAIRPIN | L.MALININA,M.TEPLOVA,K.MUSUNURU,A.TEPLOV,J.C.DARNELL, S.K.BURLEY,R.B.DARNELL,D.J.PATEL | 2ANR |
3A6P | FR3D | 92 | 44 | 2.9 | 12-08-09 | synthetic,synthetic | CRYSTAL STRUCTURE OF EXPORTIN-5:RANGTP:PRE-MIRNA COMPLEX | C.OKADA,E.YAMASHITA,S.J.LEE,S.SHIBATA,J.KATAHIRA,A.NAKAGAWA, Y.YONEDA,T.TSUKIHARA | |
2QEK | FR3D | 46 | 20 | 1.8 | 5-06-08 | synthetic | HIV-1 SUBTYPE F DIS RNA EXTENDED DUPLEX FORM | S.FREISZ,E.ENNIFAR,P.DUMAS | |
1NLC | FR3D | 46 | 22 | 1.9 | 5-13-03 | synthetic | HIV-1 DIS(MAL) DUPLEX ZN-SOAKED | E.ENNIFAR,P.WALTER,P.DUMAS | 1WVD 1Y6T 1Y6S 462D 3DVV 1Y95 1O3Z 1Y73 3C44 1Y90 1Y99 |
1MWL | FR3D | 42 | 18 | 2.4 | 2-18-03 | synthetic | CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE | Q.VICENS,E.WESTHOF | 2ET4 1YRJ 2BEE 2ET5 1LC4 2ESI 2F4T 2ET3 2ESJ 2G5Q 1J7T 2PWT 2BE0 |
2OIY | FR3D | 46 | 20 | 1.6 | 12-25-07 | synthetic | CRYSTAL STRUCTURE OF THE DUPLEX FORM OF THE HIV-1(LAI) RNA DIMERIZATION INITIATION SITE | E.ENNIFAR,P.WALTER,P.DUMAS | 2OIJ 2OJ0 3FAR |
1XPE | FR3D | 46 | 20 | 1.9 | 10-18-05 | synthetic | HIV-1 SUBTYPE B GENOMIC RNA DIMERIZATION INITIATION SITE | E.ENNIFAR,P.DUMAS | 2B8R |
1XPF | FR3D | 46 | 20 | 2.3 | 10-18-05 | synthetic | HIV-1 SUBTYPE A GENOMIC RNA DIMERIZATION INITIATION SITE | E.ENNIFAR,P.DUMAS | 2FD0 2FCY 1ZCI 1Y3S 1Y3O 1XP7 1K9W 2B8S 1YXP 2FCX 2FCZ |
2PJP | FR3D | 23 | 10 | 2.3 | 10-30-07 | ESCHERICHIA COLI | STRUCTURE OF THE MRNA-BINDING DOMAIN OF ELONGATION FACTOR SELB FROM E.COLI IN COMPLEX WITH SECIS RNA | N.SOLER,D.FOURMY,S.YOSHIZAWA | |
2PLY | FR3D | 46 | 20 | 2.6 | 11-06-07 | MOORELLA THERMOACETICA | STRUCTURE OF THE MRNA BINDING FRAGMENT OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA. | N.SOLER,D.FOURMY,S.YOSHIZAWA | 1WSU 2UWM |
3BNL | FR3D | 44 | 21 | 2.6 | 6-24-08 | synthetic | CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING A SITE IN THE PRESENCE OF [CO(NH3)6]CL3 | J.KONDO,E.WESTHOF | |
3BNP | FR3D | 43 | 16 | 2.7 | 6-24-08 | synthetic,synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE (A1555G MUTANT) | J.KONDO,E.WESTHOF | 3BNN 3BNO |
2FQN | FR3D | 43 | 18 | 2.3 | 2-14-06 | synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING A SITE | J.KONDO,A.URZHUMTSEV,E.WESTHOF | 2O3Y 2G5K 2O3W |
3BNQ | FR3D | 86 | 32 | 2.0 | 6-24-08 | synthetic,synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE IN THE PRESENCE OF SRCL2 (A1555G MUTANT, BR-DERIVATIVE) | J.KONDO,E.WESTHOF | 3BNS 3BNR |
3FTF | FR3D | 44 | 20 | 2.8 | 3-24-09 | synthetic | CRYSTAL STRUCTURE OF A. AEOLICUS KSGA IN COMPLEX WITH RNA AND SAH | C.TU,X.JI | 3FTE |
3MEI | FR3D | 44 | 19 | 2.0 | 1-26-11 | synthetic | REGULATORY MOTIF FROM THE THYMIDYLATE SYNTHASE MRNA | S.DIBROV,J.MCLEAN,T.HERMANN | |
2O3V | FR3D | 43 | 17 | 2.8 | 11-06-07 | synthetic | CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE COMPLEXED WITH PAROMAMINE DERIVATIVE NB33 | J.KONDO,M.HAINRICHSON,I.NUDELMAN,D.SHALLOM-SHEZIFI,T.BAASOV, E.WESTHOF | |
1NTB | FR3D | 40 | 15 | 2.9 | 5-13-03 | synthetic,synthetic | .9 A CRYSTAL STRUCTURE OF STREPTOMYCIN RNA-APTAMER COMPLEX | V.TERESHKO,E.SKRIPKIN,D.J.PATEL | 1NTA |
2F8S | FR3D | 44 | 18 | 3.0 | 10-31-06 | synthetic | CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA | Y.R.YUAN,H.Y.CHEN,D.J.PATEL | |
3LOA | FR3D | 42 | 15 | 2.3 | 8-04-10 | synthetic,synthetic | CRYSTAL STRUCTURE ANALYSIS OF THE RNA CONSTRUCT WITH TWO ADJACENT LIGAND BINDING SITES OF HELIX H44 IN 16S RIBOSOMAL RNA | S.DIBROV | |
1RLG | FR3D | 44 | 18 | 2.7 | 6-01-04 | synthetic | MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTION: CO- CRYSTAL STRUCTURE OF THE ARCHAEAL SRNP INTIATION COMPLEX | T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI | |
1FEU | FR3D | 80 | 32 | 2.3 | 6-25-01 | synthetic,synthetic | CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA. | R.V.FEDOROV,V.A.MESHCHERYAKOV,G.M.GONGADZE,N.P.FOMENKOVA, N.A.NEVSKAYA,M.SELMER,M.LAURBERG,O.KRISTENSEN,S.AL- KARADAGHI,A.LILJAS,M.B.GARBER,S.V.NIKONOV | |
2O3X | FR3D | 42 | 17 | 2.9 | 11-06-07 | synthetic | CRYSTAL STRUCTURE OF THE PROKARYOTIC RIBOSOMAL DECODING SITE COMPLEXED WITH PAROMAMINE DERIVATIVE NB30 | J.KONDO,M.HAINRICHSON,I.NUDELMAN,D.SHALLOM-SHEZIFI,T.BAASOV, E.WESTHOF | 2F4S |
1URN | FR3D | 55 | 13 | 1.9 | 3-08-96 | synthetic | U1A MUTANT/RNA COMPLEX + GLYCEROL | C.OUBRIDGE,N.ITO,P.R.EVANS,C.-H.TEO,K.NAGAI | |
1K8W | FR3D | 21 | 8 | 1.9 | 12-31-01 | synthetic | CRYSTAL STRUCTURE OF THE E. COLI PSEUDOURIDINE SYNTHASE TRUB BOUND TO A T STEM-LOOP RNA | C.HOANG,A.R.FERRE-D'AMARE | 1ZL3 |
1O9M | FR3D | 42 | 17 | 2.4 | 3-27-03 | ESCHERICHIA COLI | THE COMPLEX OF A NOVEL ANTIBIOTIC WITH THE AMINOACYL SITE OF THE BACTERIAL RIBOSOME REVEALED BY X-RAY CRYSTALLOGRAPHY. | R.RUSSELL,J.B.MURRAY | 2F4U 2ET8 |
2ZKO | FR3D | 42 | 18 | 1.7 | 10-14-08 | INFLUENZA A VIRUS | STRUCTURAL BASIS FOR DSRNA RECOGNITION BY NS1 PROTEIN OF HUMAN INFLUENZA VIRUS A | Y.A.YUAN | |
1RPU | FR3D | 42 | 19 | 2.5 | 1-13-04 | synthetic | CRYSTAL STRUCTURE OF CIRV P19 BOUND TO SIRNA | J.M.VARGASON,G.SZITTYA,J.BURGYAN,T.M.T.HALL | |
1ZE2 | FR3D | 42 | 16 | 3.0 | 4-26-05 | synthetic | CONFORMATIONAL CHANGE OF PSEUDOURIDINE 55 SYNTHASE UPON ITS ASSOCIATION WITH RNA SUBSTRATE | K.PHANNACHET,R.H.HUANG | 2AB4 |
3DH3 | FR3D | 84 | 26 | 3.0 | 4-28-09 | synthetic | CRYSTAL STRUCTURE OF RLUF IN COMPLEX WITH A 22 NUCLEOTIDE RNA SUBSTRATE | A.ALIAN,A.DEGIOVANNI,R.M.STROUD,J.S.FINER-MOORE | |
1EC6 | FR3D | 40 | 9 | 2.4 | 2-21-00 | synthetic | CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN BOUND TO 20-MER RNA HAIRPIN | H.A.LEWIS,K.MUSUNURU,K.B.JENSEN,C.EDO,H.CHEN | |
2I82 | FR3D | 79 | 28 | 2.0 | 11-21-06 | synthetic | CRYSTAL STRUCTURE OF PSEUDOURIDINE SYNTHASE RLUA: INDIRECT SEQUENCE READOUT THROUGH PROTEIN-INDUCED RNA STRUCTURE | C.HOANG | |
3NJ6 | FR3D | 20 | 8 | 0.9 | 8-25-10 | synthetic | .95 A RESOLUTION X-RAY STRUCTURE OF (GGCAGCAGCC)2 | A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI | |
361D | FR3D | 40 | 9 | 3.0 | 7-01-98 | synthetic | CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP | M.PERBANDT,A.NOLTE,S.LORENZ,V.A.ERDMANN,C.BETZEL | |
2P7E | FR3D | 60 | 28 | 2.0 | 5-22-07 | synthetic,synthetic,synthetic,synthetic | VANADATE AT THE ACTIVE SITE OF A SMALL RIBOZYME SUGGESTS A ROLE FOR WATER IN TRANSITION-STATE STABILIZATION | A.T.TORELLI,J.KRUCINSKA,J.E.WEDEKIND | 1ZFX 3GS1 2OUE 2FGP 2P7F 2NPY 2BCY 1ZFV 3GS8 2P7D 2D2L 1X9K 2D2K 1X9C 2NPZ 2BCZ 1ZFT |
1QC0 | FR3D | 57 | 28 | 1.6 | 11-11-99 | synthetic,synthetic,synthetic,synthetic | CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX | P.S.KLOSTERMAN,S.A.SHAH,T.A.STEITZ | |
1DFU | FR3D | 38 | 15 | 1.8 | 12-02-99 | synthetic,synthetic | CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION | M.LU,T.A.STEITZ | |
2ZI0 | FR3D | 38 | 18 | 2.8 | 7-22-08 | synthetic | CRYSTAL STRUCTURE OF TAV2B/SIRNA COMPLEX | Y.A.YUAN,H.-Y.CHEN | |
2C4Z | FR3D | 26 | 10 | 2.6 | 1-05-06 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (2SU -5-6) COMPLEX | E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS | 2B2E 1AQ4 2C4Y 2BU1 1ZDH 1ZDI 2IZM 2B2G 2C51 2BQ5 2BNY 1AQ3 2IZ8 2C4Q 1ZDK 2C50 2IZ9 |
1F27 | FR3D | 30 | 14 | 1.3 | 6-12-00 | synthetic,synthetic | CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT | J.NIX,D.SUSSMAN,C.WILSON | |
1Q2R | FR3D | 38 | 13 | 2.9 | 9-09-03 | synthetic | CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERMEDIATE | W.XIE,X.LIU,R.H.HUANG | 1Q2S |
1R9F | FR3D | 38 | 19 | 1.9 | 1-27-04 | synthetic,synthetic | CRYSTAL STRUCTURE OF P19 COMPLEXED WITH 19-BP SMALL INTERFERING RNA | K.YE,L.MALININA,D.J.PATEL | |
1T0D | FR3D | 64 | 28 | 2.2 | 6-15-04 | synthetic,synthetic | CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA | S.SHANDRICK,Q.ZHAO,Q.HAN,B.K.AYIDA,M.TAKAHASHI,G.C.WINTERS, K.B.SIMONSEN,D.VOURLOUMIS,T.HERMANN | 1T0E 1ZX7 2A04 1ZZ5 |
3OL9 | FR3D | 140 | 62 | 2.2 | 12-22-10 | synthetic,synthetic,synthetic | POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH 3'-DEOXY-CTP | P.GONG,O.B.PEERSEN | 3OLB 3OL6 3OL7 3OL8 3OLA |
3BT7 | FR3D | 36 | 11 | 2.4 | 4-29-08 | synthetic | STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE TRMA IN COMPLEX WITH 19 NUCLEOTIDE T-ARM ANALOGUE | A.ALIAN,R.M.STROUD,J.FINER-MOORE | |
3KS8 | FR3D | 36 | 18 | 2.4 | 1-12-10 | synthetic,synthetic | CRYSTAL STRUCTURE OF RESTON EBOLAVIRUS VP35 RNA BINDING DOMAIN IN COMPLEX WITH 18BP DSRNA | C.R.KIMBERLIN,Z.A.BORNHOLDT,S.LI,V.L.WOODS,I.J.MACRAE, E.O.SAPHIRE | |
1U1Y | FR3D | 31 | 11 | 2.9 | 12-07-04 | ENTEROBACTERIO PHAGE MS2 | CRYSTAL STRUCTURE OF A COMPLEX BETWEEN WT BACTERIOPHAGE MS2 COAT PROTEIN AND AN F5 APTAMER RNA STEMLOOP WITH 2AMINOPURINE SUBSTITUTED AT THE-10 POSITION | W.T.HORN,M.A.CONVERY,N.J.STONEHOUSE,C.J.ADAMS,L.LILJAS, S.E.PHILLIPS,P.G.STOCKLEY | 5MSF |
1SI3 | FR3D | 18 | 6 | 2.6 | 5-25-04 | synthetic | CRYSTAL STRUCTURE OF THE PAZ DOMAIN OF HUMAN EIF2C1 IN COMPLEX WITH A 9-MER SIRNA-LIKE DUPLEX | K.YE,J.B.MA,D.PATEL | |
1ZEV | FR3D | 36 | 13 | 1.6 | 10-25-05 | synthetic | CRYSTAL STRUCTURE OF A PATHOGENIC RNA: CUG REPEATS | B.H.MOOERS,J.S.LOGUE,J.A.BERGLUND | 3GM7 |
2GJW | FR3D | 71 | 32 | 2.9 | 9-12-06 | synthetic,synthetic,synthetic | RNA RECOGNITION AND CLEAVAGE BY AN SPLICING ENDONUCLEASE | S.XUE,K.CALVIN,H.LI | |
2OE5 | FR3D | 33 | 14 | 1.5 | 2-13-07 | synthetic,synthetic | .5 A X-RAY CRYSTAL STRUCTURE OF APRAMYCIN COMPLEX WITH RNA FRAGMENT GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC CONTAINING THE HUMAN RIBOSOMAL DECODING A SITE: RNA CONSTRUCT WITH 3'- OVERHANG | T.HERMANN,V.TERESHKO,E.SKRIPKIN,D.J.PATEL | 2OE8 2OE6 |
2JLT | FR3D | 32 | 15 | 2.9 | 8-18-09 | ESCHERICHIA COLI,ESCHERICHIA COLI | CRYSTAL STRUCTURE OF AN RNA KISSING COMPLEX | C.DIPRIMO,S.FRIBOURG | |
1R3E | FR3D | 50 | 20 | 2.1 | 11-04-03 | synthetic,synthetic | CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA-PROTEIN RECOGNITION THROUGH A COMBINATION OF RIGID DOCKING AND INDUCED FIT | H.PAN,S.AGARWALLA,D.T.MOUSTAKAS,J.FINER-MOORE,R.M.STROUD | |
1JBS | FR3D | 34 | 12 | 2.0 | 10-26-01 | synthetic | CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN AND A 29-MER SRD RNA ANALOG | X.YANG,T.GERCZEI,L.GLOVER,C.C.CORRELL | |
1E7K | FR3D | 34 | 14 | 2.9 | 2-19-01 | HOMO SAPIENS | CRYSTAL STRUCTURE OF THE SPLICEOSOMAL 15.5KD PROTEIN BOUND TO A U4 SNRNA FRAGMENT | I.VIDOVIC,S.NOTTROTT,K.HARTHMUTH,R.LUHRMANN,R.FICNER | |
3L26 | FR3D | 16 | 8 | 2.4 | 1-26-10 | synthetic | CRYSTAL STRUCTURE OF ZAIRE EBOLA VP35 INTERFERON INHIBITORY DOMAIN BOUND TO 8 BP DSRNA | D.W.LEUNG,K.C.PRINS,D.M.BOREK,M.FARAHBAKHSH,J.M.TUFARIELLO, P.RAMANAN,J.C.NIX,L.A.HELGESON,Z.OTWINOWSKI,R.B.HONZATKO, C.F.BASLER,G.K.AMARASINGHE | 333D |
420D | FR3D | 32 | 16 | 1.9 | 1-13-99 | synthetic | CRYSTAL STRUCTURE OF A 16-MER RNA DUPLEX WITH NON-ADJACENT A(ANTI).G(SYN) MISMATCHES | B.PAN,S.N.MITRA,M.SUNDARALINGAM | 1YZD 1Z7F 1Z79 405D 2H1M 1YY0 |
406D | FR3D | 32 | 15 | 1.8 | 2-05-99 | engineered | '-R(*CP*AP*CP*CP*GP*GP*AP*UP*GP*GP*UP*(BRO) UP*CP*GP*GP*UP*G)-3' | S.A.SHAH,A.T.BRUNGER | |
1RXA | FR3D | 16 | 8 | 2.9 | 10-20-96 | synthetic | CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES | S.PORTMANN,N.USMAN,M.EGLI | |
1ZBH | FR3D | 32 | 10 | 3.0 | 9-26-06 | synthetic | '-END SPECIFIC RECOGNITION OF HISTONE MRNA STEM-LOOP BY 3'- EXONUCLEASE | Y.CHENG,D.J.PATEL | |
3AGV | FR3D | 25 | 2 | 2.1 | 11-10-10 | synthetic | CRYSTAL STRUCTURE OF A HUMAN IGG-APTAMER COMPLEX | Y.NOMURA,S.SUGIYAMA,T.SAKAMOTO,S.MIYAKAWA,H.ADACHI,K.TAKANO, S.MURAKAMI,T.INOUE,Y.MORI,Y.NAKAMURA,H.MATSUMURA | |
3DD2 | FR3D | 15 | 3 | 1.9 | 11-11-08 | synthetic | CRYSTAL STRUCTURE OF AN RNA APTAMER BOUND TO HUMAN THROMBIN | S.B.LONG,B.A.SULLENGER | |
2IZN | FR3D | 26 | 8 | 2.6 | 7-27-06 | ENTEROBACTERIO PHAGE MS2 | MS2-RNA HAIRPIN (G-10) COMPLEX | C.HELGSTRAND,E.GRAHN,T.MOSS,N.J.STONEHOUSE,K.TARS, P.G.STOCKLEY,L.LILJAS | |
2AZ2 | FR3D | 30 | 12 | 2.6 | 10-11-05 | synthetic | FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P4122) | J.A.CHAO,J.H.LEE,B.R.CHAPADOS,E.W.DEBLER,A.SCHNEEMANN, J.R.WILLIAMSON | 2AZ0 |
397D | FR3D | 27 | 11 | 1.3 | 9-11-98 | synthetic,synthetic | A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS- ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION- DEPENDENT BULGE CONFORMATION | J.A.IPPOLITO,T.A.STEITZ | |
1CSL | FR3D | 28 | 11 | 1.6 | 2-14-00 | synthetic,synthetic | CRYSTAL STRUCTURE OF THE RRE HIGH AFFINITY SITE | J.A.IPPOLITO,T.A.STEITZ | |
2F8K | FR3D | 15 | 6 | 2.0 | 1-24-06 | synthetic | SEQUENCE SPECIFIC RECOGNITION OF RNA HAIRPINS BY THE SAM DOMAIN OF VTS1 | T.AVIV,Z.LIN,G.BEN-ARI,C.A.SMIBERT,F.SICHERI | |
3EQT | FR3D | 16 | 8 | 2.0 | 3-10-09 | synthetic | CRYSTAL STRUCTURE OF HUMAN LGP2 C-TERMINAL DOMAIN IN COMPLEX WITH DSRNA | P.LI,X.LI | 3OG8 1DI2 1PBM 3JXQ 1RC7 3ADL 3JXR 1G3A 3LRN |
1G2J | FR3D | 14 | 6 | 2.0 | 12-06-00 | synthetic | RNA OCTAMER R(CCCP*GGGG) CONTAINING PHENYL RIBONUCLEOTIDE | G.MINASOV,J.MATULIC-ADAMIC,C.J.WILDS,P.HAEBERLI,N.USMAN, L.BEIGELMAN,M.EGLI | |
2B3J | FR3D | 28 | 7 | 2.0 | 1-24-06 | synthetic | CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE, TADA, IN COMPLEX WITH RNA | H.C.LOSEY,A.J.RUTHENBURG,G.L.VERDINE | |
2XLI | FR3D | 13 | 5 | 2.3 | 9-22-10 | PSEUDOMONAS AERUGINOSA | CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, MONOCLINIC FORM | R.E.HAURWITZ,M.JINEK,B.WIEDENHEFT,K.ZHOU,J.A.DOUDNA | 2XLK 2XLJ |
433D | FR3D | 28 | 14 | 2.1 | 12-04-98 | synthetic | CRYSTAL STRUCTURE OF A 14 BASE PAIR RNA DUPLEX WITH NONSYMMETRICAL TANDEM G.U WOBBLE BASE PAIRS | J.TRIKHA,D.J.FILMAN,J.M.HOGLE | |
2I91 | FR3D | 22 | 7 | 2.6 | 10-17-06 | synthetic,synthetic | KDA RO AUTOANTIGEN IN COMPLEX WITH A FRAGMENT OF MISFOLDED RNA | K.M.REINISCH,A.J.STEIN | |
3P59 | FR3D | 94 | 35 | 2.2 | 4-06-11 | synthetic,synthetic | FIRST CRYSTAL STRUCTURE OF A RNA NANOSQUARE | S.DIBROV,T.HERMANN,J.MCLEAN,J.PARSONS | |
3OIN | FR3D | 14 | 4 | 1.9 | 12-01-10 | synthetic | CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE NEP1/EMG1 BOUND TO S- ADENOSYLHOMOCYSTEINE AND 1 MOLECULE OF COGNATE RNA | S.R.THOMAS,N.LARONDE-LEBLANC | 3OIJ |
6MSF | FR3D | 24 | 8 | 2.8 | 7-08-98 | ENTEROBACTERIO PHAGE MS2,synthetic | F6 APTAMER MS2 COAT PROTEIN COMPLEX | M.A.CONVERY,S.ROWSELL,N.J.STONEHOUSE,A.D.ELLINGTON,I.HIRAO, J.B.MURRAY,D.S.PEABODY,S.E.V.PHILLIPS,P.G.STOCKLEY | |
1MHK | FR3D | 26 | 9 | 2.5 | 9-06-02 | synthetic,synthetic | CRYSTAL STRUCTURE ANALYSIS OF A 26MER RNA MOLECULE, REPRESENTING A NEW RNA MOTIF, THE HOOK-TURN | S.SZEP,J.WANG,P.B.MOORE | |
1DUQ | FR3D | 104 | 44 | 2.1 | 5-16-00 | synthetic,synthetic | CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1 | L.-W.HUNG,E.L.HOLBROOK,S.R.HOLBROOK | |
1RNA | FR3D | 28 | 14 | 2.2 | 4-15-91 | synthetic | CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2 | A.C.DOCK-BREGEON,B.CHEVRIER,A.PODJARNY,J.JOHNSON,J.S.DE BEAR,G.R.GOUGH,P.T.GILHAM,D.MORAS | |
7MSF | FR3D | 25 | 8 | 2.8 | 11-11-98 | ENTEROBACTERIO PHAGE MS2 | MS2 PROTEIN CAPSID/RNA COMPLEX | S.ROWSELL,N.J.STONEHOUSE,M.A.CONVERY,C.J.ADAMS, A.D.ELLINGTON,I.HIRAO,D.S.PEABODY,P.G.STOCKLEY, S.E.V.PHILLIPS | |
1L3Z | FR3D | 14 | 6 | 2.0 | 2-25-03 | synthetic | CRYSTAL STRUCTURE ANALYSIS OF AN RNA HEPTAMER | K.SHI,B.PAN,M.SUNDARALINGAM | |
1NUJ | FR3D | 96 | 37 | 1.8 | 8-19-03 | synthetic,synthetic | THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION | J.E.WEDEKIND,D.B.MCKAY | 1NUV 429D |
3CGS | FR3D | 24 | 10 | 1.6 | 7-01-08 | synthetic,synthetic | X-RAY STRUCTURE CONTAINING THE PSEUDOURIDYLATED U2 SNRNA AND MAMMALIAN INTRON BRANCH SITE CONSENSUS SEQUENCES | Y.LIN,C.L.KIELKOPF | |
1FUF | FR3D | 26 | 12 | 1.7 | 11-09-01 | synthetic | CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE | J.DENG,Y.XIONG,C.SUDARSANAKUMAR,K.SHI,M.SUNDARALINGAM | 1IK5 |
3CGP | FR3D | 24 | 10 | 1.6 | 7-01-08 | synthetic,synthetic | X-RAY STRUCTURE OF A PSEUDOURIDINE-CONTAINING YEAST SPLICEOSOMAL U2 SNRNA-INTRON BRANCH SITE DUPLEX BOUND TO IODIDE IONS | Y.LIN,C.L.KIELKOPF | 3CGQ |
1TFW | FR3D | 51 | 19 | 2.2 | 8-10-04 | synthetic,synthetic,synthetic,synthetic | HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE | Y.XIONG,T.A.STEITZ | |
2R22 | FR3D | 26 | 13 | 1.4 | 9-25-07 | synthetic | STRUCTURE OF THE NATIVE RNA TRIDECAMER R(GCGUUUGAAACGC) AT 1.5 A (NATMN) | Y.TIMSIT,S.BOMBARD | 2R21 2R1S 2R20 |
3CGR | FR3D | 24 | 10 | 2.1 | 7-01-08 | synthetic,synthetic | X-RAY STRUCTURE CONTAINING THE PSEUDOURIDYLATED U2 SNRNA AND INTRON BRANCH SITE CONSENSUS SEQUENCES | Y.LIN,C.L.KIELKOPF | |
3MQK | FR3D | 22 | 5 | 2.8 | 12-29-10 | synthetic,synthetic | CBF5-NOP10-GAR1 COMPLEX BINDING WITH 17MER RNA CONTAINING ACA TRINUCLEOTIDE | J.ZHOU,B.LIANG,H.LI | |
1I9X | FR3D | 26 | 12 | 2.2 | 9-05-01 | synthetic | CRYSTAL STRUCTURE OF BPS-U2 SNRNA DUPLEX | J.A.BERGLUND,M.ROSBASH,S.C.SCHULTZ | |
1ZSE | FR3D | 12 | 4 | 3.0 | 5-09-06 | ENTEROBACTERIO PHAGE MS2 | RNA STEMLOOP FROM BACTERIOPHAGE QBETA COMPLEXED WITH AN N87S MUTANT MS2 CAPSID | W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY | 2BS1 2B2D 2BS0 |
354D | FR3D | 22 | 8 | 1.5 | 11-26-97 | ESCHERICHIA COLI,ESCHERICHIA COLI | STRUCTURE OF LOOP E FROM E. COLI 5S RRNA | C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ | |
3CJZ | FR3D | 24 | 10 | 1.8 | 10-14-08 | synthetic | EFFECTS OF N2,N2-DIMETHYLGUANOSINE ON RNA STRUCTURE AND STABILITY: CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH TANDEM M22G:A PAIRS | P.S.PALLAN,C.KREUTZ,S.BOSIO,R.MICURA,M.EGLI | |
1YYW | FR3D | 96 | 48 | 2.8 | 11-22-05 | synthetic | CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.8-ANGSTROM RESOLUTION | J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI | |
1SDR | FR3D | 48 | 24 | 2.6 | 2-27-95 | synthetic,synthetic | CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE | H.SCHINDELIN,M.ZHANG,R.BALD,J.-P.FUERSTE,V.A.ERDMANN, U.HEINEMANN | |
353D | FR3D | 24 | 11 | 2.4 | 11-10-97 | synthetic,synthetic | CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE | C.BETZEL,S.LORENZ,J.P.FURSTE,R.BALD,M.ZHANG,T.R.SCHNEIDER, K.S.WILSON,V.A.ERDMANN | |
157D | FR3D | 24 | 12 | 1.8 | 5-31-94 | synthetic | CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS | G.A.LEONARD,K.E.MCAULEY-HECHT,S.EBEL,D.M.LOUGH,T.BROWN, W.N.HUNTER | 2Q1O 1YYO 1YYK 2G92 |
3FTM | FR3D | 46 | 18 | 2.7 | 2-24-09 | synthetic,synthetic | CLASS II LIGASE RIBOZYME PRODUCT-TEMPLATE DUPLEX, STRUCTURE 1 | J.N.PITT,A.R.FERRE-D'AMARE | 3FS0 |
205D | FR3D | 24 | 12 | 2.6 | 9-15-95 | engineered | STRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOP | K.J.BAEYENS,H.L.DE BONDT,S.R.HOLBROOK | |
422D | FR3D | 24 | 8 | 2.6 | 6-03-03 | engineered | '-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' | S.ESWARAMOORTHY,S.T.RAO,M.SUNDARALINGAM | |
1B7F | FR3D | 24 | 2 | 2.6 | 5-03-99 | synthetic | SXL-LETHAL PROTEIN/RNA COMPLEX | N.HANDA,O.NUREKI,K.KURIMOTO,I.KIM,H.SAKAMOTO,Y.SHIMURA, Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) | |
1QBP | FR3D | 72 | 29 | 2.1 | 11-26-99 | synthetic | CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS | A.C.ANDERSON,R.H.O'NEIL,D.J.FILMAN,C.A.FREDERICK | |
280D | FR3D | 48 | 24 | 2.4 | 9-30-96 | engineered | THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES | S.E.LIETZKE,C.L.BARNES,C.E.KUNDROT | |
1KD5 | FR3D | 22 | 10 | 1.6 | 3-04-03 | synthetic | THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2 METAL FREE FORM | V.KACER,S.A.SCARINGE,J.N.SCARSDALE,J.P.RIFE | 1KD4 1KD3 |
2NUG | FR3D | 44 | 20 | 1.7 | 11-20-07 | synthetic,synthetic | CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 1.7-ANGSTROM RESOLUTION | J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI | |
1QCU | FR3D | 44 | 22 | 1.2 | 11-11-99 | synthetic,synthetic | CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX | P.S.KLOSTERMAN,S.A.SHAH,T.A.STEITZ | |
3LRR | FR3D | 22 | 9 | 2.1 | 6-02-10 | synthetic | CRYSTAL STRUCTURE OF HUMAN RIG-I CTD BOUND TO A 12 BP AU RICH 5' PPP DSRNA | P.LI | |
1LNT | FR3D | 22 | 11 | 1.7 | 6-03-03 | synthetic,synthetic | CRYSTAL STRUCTURE OF THE HIGHLY CONSERVED RNA INTERNAL LOOP OF SRP | J.DENG,Y.XIONG,B.PAN,M.SUNDARALINGAM | |
1YZ9 | FR3D | 44 | 20 | 2.1 | 11-22-05 | synthetic | CRYSTAL STRUCTURE OF RNASE III MUTANT E110Q FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.1- ANGSTROM RESOLUTION | J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI | |
3IBK | FR3D | 22 | 12 | 2.2 | 5-12-10 | synthetic | CRYSTAL STRUCTURE OF A TELOMERIC RNA QUADRUPLEX | G.W.COLLIE,S.NEIDLE,G.N.PARKINSON | |
3NCU | FR3D | 22 | 10 | 2.5 | 6-30-10 | synthetic | STRUCTURAL AND FUNCTIONAL INSIGHTS INTO PATTERN RECOGNITION BY THE INNATE IMMUNE RECEPTOR RIG-I | G.SHENG,H.LI | |
3HGA | FR3D | 10 | 4 | 1.3 | 8-18-09 | synthetic | CRYSTAL STRUCTURE OF 4-SE-URIDINE DERIVATIZED RNA | JIA SHENG,SOARES ALEXEI,ZHEN HUANG | |
1A34 | FR3D | 20 | 9 | 1.8 | 4-29-98 | synthetic,TOBACCO NECROSIS SATELLITE VIRUS | SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX | S.B.LARSON,J.DAY,A.J.GREENWOOD,A.MCPHERSON | |
1DQH | FR3D | 19 | 9 | 1.7 | 11-13-00 | synthetic,synthetic | CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS | Y.XIONG,M.SUNDARALINGAM | 1DQF |
3NJ7 | FR3D | 60 | 24 | 1.9 | 8-25-10 | synthetic | .9 A RESOLUTION X-RAY STRUCTURE OF (GGCAGCAGCC)2 | A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI | |
3BSO | FR3D | 16 | 7 | 1.7 | 1-08-08 | synthetic,synthetic | NORWALK VIRUS POLYMERASE BOUND TO CYTIDINE 5'-TRIPHOSPHATE AND PRIMER-TEMPLATE RNA | D.F.ZAMYATKIN,K.K.S.NG | 3H5X 3H5Y |
1ZH5 | FR3D | 18 | 4 | 1.9 | 1-17-06 | synthetic | STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOANTIGEN | M.TEPLOVA,Y.R.YUAN,S.ILIN,L.MALININA,A.T.PHAN,A.TEPLOV, D.J.PATEL | 1YTY |
1G2E | FR3D | 9 | 1 | 2.3 | 2-05-01 | synthetic | CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE TUMOR NECROSIS FACTOR ALPHA RNA | X.WANG,T.M.T.HALL | |
1YVP | FR3D | 21 | 5 | 2.2 | 6-07-05 | synthetic,synthetic | RO AUTOANTIGEN COMPLEXED WITH RNAS | A.J.STEIN,G.FUCHS,C.FU,S.L.WOLIN,K.M.REINISCH | |
2AO5 | FR3D | 36 | 16 | 2.1 | 3-28-06 | synthetic | CRYSTAL STRUCTURE OF AN RNA DUPLEX R(GGCGBRUGCGCU)2 WITH TERMINAL AND INTERNAL TANDEM G-U BASE PAIRS | R.UTSUNOMIYA,K.SUTO,D.BALASUNDARESAN,A.FUKAMIZU,P.K.KUMAR, H.MIZUNO | |
3KMQ | FR3D | 10 | 5 | 2.1 | 7-07-10 | synthetic,synthetic | G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA, TETRAGONAL STRUCTURE | C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE | 1RAU 1WTT 3KLV 3KNA 2E9T 1ME1 3KOA 3KMS 2E9Z 2E9R 1WNE 2EC0 1QLN |
2G91 | FR3D | 15 | 6 | 1.5 | 4-03-07 | synthetic | CRYSTAL STRUCTURE ANALYSIS OF THE AN RNA NONAMER R(GGUGCGC) D(BRC)R(C) | K.SHI,B.PAN,M.SUNDARALINGAM | |
2GQ6 | FR3D | 32 | 16 | 1.3 | 6-27-06 | synthetic,synthetic | CRYSTAL STRUCTURE OF AN RNA RACEMATE | W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL, V.A.ERDMANN | 2GQ5 2G32 2GQ7 2GQ4 2GPM |
2BGG | FR3D | 29 | 10 | 2.2 | 3-31-05 | synthetic,synthetic | THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT SIRNA DUPLEX. | J.S.PARKER,S.M.ROE,D.BARFORD | |
1JZV | FR3D | 30 | 15 | 1.7 | 11-11-03 | synthetic,synthetic | CRYSTAL STRUCTURE OF A BULGED RNA FROM THE SL2 STEM-LOOP OF THE HIV-1 PSI-RNA | Y.XIONG,C.SUDARSANAKUMAR,J.DENG,B.PAN,M.SUNDARALINGAM | |
402D | FR3D | 16 | 8 | 2.3 | 6-16-98 | synthetic | '-R(*CP*GP*CP*CP*AP*GP*CP*G)-3' | S.B.JANG,L.-W.HUNG,Y.-I.CHI,E.L.HOLBROOK,R.CARTER, S.R.HOLBROOK | |
398D | FR3D | 24 | 8 | 1.9 | 10-06-98 | synthetic | '-DNA-RNA-5' JUNCTION FORMED DURING INITIATION OF MINUS- STRAND SYNTHESIS OF HIV REPLICATION | U.MUELLER,G.MEIER,A.MOCHI-ONORI,L.CELLAI,H.HEUMANN | |
472D | FR3D | 16 | 8 | 1.9 | 11-27-00 | synthetic,synthetic | STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS | J.DENG,M.SUNDARALINGAM | |
3GLP | FR3D | 40 | 12 | 1.2 | 5-26-09 | synthetic | .23 A RESOLUTION X-RAY STRUCTURE OF (GCUGCUGC)2 | A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI | |
435D | FR3D | 28 | 14 | 1.4 | 6-14-99 | synthetic,synthetic | '-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' | U.MUELLER,H.SCHUEBEL,M.SPRINZL,U.HEINEMANN | 3M85 3M7N 2XPJ 2WJ8 259D 2FZ2 1RXB |
2G3S | FR3D | 80 | 40 | 1.5 | 1-16-07 | synthetic | RNA STRUCTURE CONTAINING GU BASE PAIRS | S.B.JANG,L.W.HUNG,M.S.JEONG,E.L.HOLBROOK,X.CHEN,D.H.TURNER, S.R.HOLBROOK | 1EKD |
3BSN | FR3D | 16 | 6 | 1.8 | 1-08-08 | synthetic,synthetic | NORWALK VIRUS POLYMERASE BOUND TO 5-NITROCYTIDINE TRIPHOSPHATE AND PRIMER-TEMPLATE RNA | D.F.ZAMYATKIN,K.K.S.NG | |
1N35 | FR3D | 13 | 5 | 2.5 | 12-25-02 | synthetic,synthetic | LAMBDA3 ELONGATION COMPLEX WITH FOUR PHOSPHODIESTER BOND FORMED | Y.TAO,D.L.FARSETTA,M.L.NIBERT,S.C.HARRISON | 1N1H 1UON |
1SA9 | FR3D | 40 | 16 | 2.9 | 5-18-04 | synthetic | CRYSTAL STRUCTURE OF THE RNA OCTAMER GGCGAGCC | S.B.JANG,K.BAEYENS,M.S.JEONG,J.SANTALUCIA JR,D.TURNER, S.R.HOLBROOK | 1YFV |
1ZDJ | FR3D | 16 | 4 | 2.9 | 7-08-98 | ENTEROBACTERIO PHAGE MS2 | STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX | E.GRAHN,N.STONEHOUSE,K.VALEGARD,S.VANDENWORM,L.LILJAS | |
439D | FR3D | 16 | 8 | 1.6 | 9-14-01 | synthetic,synthetic | '-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'- R(*CP*CP*GP*CP*CP*UP*GP*G)-3' | M.PERBANDT,S.LORENZ,M.VALLAZZA,V.A.ERDMANN,C.BETZEL | |
1J9H | FR3D | 32 | 16 | 1.4 | 10-26-01 | synthetic | CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES | Y.XIONG,J.DENG,C.SUDARSANAKUMAR,M.SUNDARALINGAM | |
438D | FR3D | 16 | 8 | 2.5 | 5-12-99 | synthetic | STRUCTURE OF AN RNA DUPLEX R(GGGCGCUCC)2 WITH NON-ADJACENT G.U BASE PAIRS | K.SHI,M.C.WAHL,M.SUNDARALINGAM | |
1FXL | FR3D | 8 | 1 | 1.8 | 2-05-01 | synthetic | CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE C-FOS RNA | X.WANG,T.M.T.HALL | |
165D | FR3D | 16 | 8 | 1.6 | 8-31-94 | synthetic | THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE | W.CRUSE,P.SALUDJIAN,E.BIALA,P.STRAZEWSKI,T.PRANGE,O.KENNARD | |
3L25 | FR3D | 16 | 8 | 2.0 | 1-26-10 | synthetic | CRYSTAL STRUCTURE OF ZAIRE EBOLA VP35 INTERFERON INHIBITORY DOMAIN BOUND TO 8 BP DSRNA | D.W.LEUNG,K.C.PRINS,D.M.BOREK,M.FARAHBAKHSH,J.M.TUFARIELLO, P.RAMANAN,J.C.NIX,L.A.HELGESON,Z.OTWINOWSKI,R.B.HONZATKO, C.F.BASLER,G.K.AMARASINGHE | |
2VAL | FR3D | 28 | 14 | 2.0 | 10-16-07 | ESCHERICHIA COLI,ESCHERICHIA COLI | CRYSTAL STRUCTURE OF AN ESCHERICHIA COLI TRNAGLY MICROHELIX AT 2.0 ANGSTROM RESOLUTION | C.FORSTER,A.B.E.BRAUER,M.PERBANDT,D.LEHMANN,J.P.FURSTE, C.BETZEL,V.A.ERDMANN | |
2V6W | FR3D | 14 | 7 | 1.8 | 11-06-07 | ESCHERICHIA COLI,ESCHERICHIA COLI | TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION | C.FOERSTER,A.B.E.BRAUER,S.BRODE,J.P.FUERSTE,C.BETZEL, V.A.ERDMANN | 2E2I 3GTJ 2NVQ 2E2H 2YU9 3GTM 3GTL 1R9S 1SFO 2KYE 3GTP 2NVZ 1R9T 3GTQ 2NVX 3GTG 3GTO 2E2J |
409D | FR3D | 42 | 18 | 2.5 | 1-13-99 | synthetic | CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOBBLES | B.PAN,S.N.MITRA,L.SUN,D.HART,M.SUNDARALINGAM | |
1SAQ | FR3D | 14 | 6 | 2.7 | 5-18-04 | synthetic | CRYSTAL STRUCTURE OF THE RNA OCTAMER GIC(GA)GCC | S.B.JANG,K.BAEYENS,M.S.JEONG,J.SANTALUCIA JR,D.TURNER, S.R.HOLBROOK | |
3GVN | FR3D | 14 | 7 | 1.2 | 7-28-09 | synthetic,synthetic | THE 1.2 ANGSTROEM CRYSTAL STRUCTURE OF AN E.COLI TRNASER ACCEPTOR STEM MICROHELIX REVEALS TWO MAGNESIUM BINDING SITES | A.EICHERT,J.P.FURSTE,A.SCHREIBER,M.PERBANDT,C.BETZEL, V.A.ERDMANN,C.FORSTER | |
466D | FR3D | 28 | 14 | 1.2 | 8-16-99 | synthetic,synthetic | DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX | U.MUELLER,Y.A.MULLER,R.HERBST-IRMER,M.SPRINZL,U.HEINEMANN | 464D 434D |
2V7R | FR3D | 14 | 7 | 1.2 | 3-18-08 | HOMO SAPIENS,HOMO SAPIENS | CRYSTAL STRUCTURE OF A HUMAN TRNAGLY MICROHELIX AT 1.2 ANGSTROM RESOLUTION | C.FOERSTER,M.MANKOWSKA,J.P.FUERSTE,M.PERBANDT,C.BETZEL, V.A.ERDMANN | |
2VUQ | FR3D | 14 | 7 | 1.2 | 3-10-09 | HOMO SAPIENS,HOMO SAPIENS | CRYSTAL STRUCTURE OF A HUMAN TRNAGLY ACCEPTOR STEM MICROHELIX (DERIVED FROM THE GENE SEQUENCE DG9990) AT 1.18 ANGSTROEM RESOLUTION | A.EICHERT,M.PERBANDT,A.SCHREIBER,J.P.FUERSTE,C.BETZEL, V.A.ERDMANN,C.FOERSTER | 2JLV 1FL8 2L9E 2JLY 2K65 2JLU 2JLW 2JLX 2O81 2JLZ 2W89 |
2A0P | FR3D | 14 | 6 | 1.9 | 8-16-05 | synthetic | CRYSTAL STRUCTURE OF RNA OLIGOMER CONTAINING 4'-THIORIBOSE | P.HAEBERLI,I.BERGER,P.S.PALLAN,M.EGLI | |
1OSU | FR3D | 18 | 6 | 1.4 | 4-04-96 | synthetic | STRUCTURE OF THE RNA HEXAMER, R(UUCGCG), WITH A 5'-UU- OVERHANG EXHIBITING HOOGSTEEN-LIKE TRANS U-U BASE PAIRS | M.C.WAHL,S.T.RAO,M.SUNDARALINGAM | |
1J8G | FR3D | 24 | 20 | 0.6 | 11-23-01 | synthetic | X-RAY ANALYSIS OF A RNA TETRAPLEX R(UGGGGU)4 AT ULTRA-HIGH RESOLUTION | J.DENG,Y.XIONG,M.SUNDARALINGAM | |
3MDI | FR3D | 6 | 1 | 2.1 | 6-02-10 | synthetic | CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FACTOR IM IN COMPLEX WITH RNA UGUAAA | Q.YANG,G.M.GILMARTIN,S.DOUBLIE | |
3G9Y | FR3D | 6 | 1 | 1.4 | 3-03-09 | synthetic | CRYSTAL STRUCTURE OF THE SECOND ZINC FINGER FROM ZRANB2/ZNF265 BOUND TO 6 NT SSRNA SEQUENCE AGGUAA | F.E.LOUGHLIN,A.P.MCGRATH,M.LEE,J.M.GUSS,J.P.MACKAY | |
2GXB | FR3D | 12 | 6 | 2.2 | 5-01-07 | synthetic | CRYSTAL STRUCTURE OF THE ZA DOMAIN BOUND TO Z-RNA | A.ATHANASIADIS,D.PLACIDO,A.RICH | 1T4X |
3MDG | FR3D | 6 | 1 | 2.2 | 6-02-10 | synthetic | CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FACTOR IM IN COMPLEX WITH RNA UUGUAU | Q.YANG,G.M.GILMARTIN,S.DOUBLIE | 3Q2T |
1N38 | FR3D | 7 | 2 | 2.8 | 12-25-02 | synthetic,synthetic | REOVIRUS POLYMERASE LAMBDA3 ELONGATION COMPLEX WITH ONE PHOSPHODIESTER BOND FORMED | Y.TAO,D.L.FARSETTA,M.L.NIBERT,S.C.HARRISON | |
1J6S | FR3D | 20 | 12 | 1.4 | 8-05-03 | synthetic | CRYSTAL STRUCTURE OF AN RNA TETRAPLEX (UGAGGU)4 WITH A- TETRADS, G-TETRADS, U-TETRADS AND G-U OCTADS | B.PAN,Y.XIONG,K.SHI,J.DENG,M.SUNDARALINGAM | 1D0T 1R3X 1GUC |
377D | FR3D | 20 | 8 | 1.8 | 8-10-98 | synthetic | '-R(*CP*GP*UP*AP*CP*DG)-3' | R.BISWAS,S.N.MITRA,M.SUNDARALINGAM | |
1P79 | FR3D | 20 | 8 | 1.1 | 11-04-03 | synthetic | CRYSTAL STRUCTURE OF A BULGED RNA TETRAPLEX: IMPLICATIONS FOR A NOVEL BINDING SITE IN RNA TETRAPLEX | B.PAN,Y.XIONG,K.SHI,M.SUNDARALINGAM | |
1YTU | FR3D | 9 | 4 | 2.5 | 4-05-05 | synthetic,synthetic | STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF THE GUIDE RNA STRAND BY THE A. FULGIDUS PIWI PROTEIN | J.B.MA,Y.R.YUAN,G.MEISTER,Y.PEI,T.TUSCHL,D.J.PATEL | |
2AWE | FR3D | 39 | 24 | 2.1 | 2-07-06 | engineered | BASE-TETRAD SWAPPING RESULTS IN DIMERIZATION OF RNA QUADRUPLEXES: IMPLICATIONS FOR FORMATION OF I-MOTIF RNA OCTAPLEX | B.PAN,K.SHI,M.SUNDARALINGAM | |
2GRB | FR3D | 32 | 31 | 1.4 | 11-21-06 | synthetic | CRYSTAL STRUCTURE OF AN RNA QUADRUPLEX CONTAINING INOSINE- TETRAD | B.PAN,K.SHI,M.SUNDARALINGAM | |
1MDG | FR3D | 20 | 16 | 1.5 | 8-12-03 | synthetic | AN ALTERNATING ANTIPARALLEL OCTAPLEX IN AN RNA CRYSTAL STRUCTURE | B.C.PAN,Y.XIONG,K.SHI,M.SUNDARALINGAM | |