2B2E RNA STEMLOOP FROM BACTERIOPHAGE MS2 COMPLEXED WITH AN N87S, E89K MUTANT MS2 CAPSID X-RAY DIFFRACTION 5-09-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY CAPSID, COMPLEX (CAPSID PROTEIN - RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL, PROTEIN/RNA, VIRUS/VIRAL PROTEIN/RNA COMPLEX 3.15 ENTEROBACTERIO PHAGE MS2 2PCV SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA SOLUTION NMR 5-08-07 H.JIN,J.P.LORIA,P.B.MOORE BOX H/ACA SNORNA, PSEUDOURIDYLATION, RRNA synthetic 2G91 CRYSTAL STRUCTURE ANALYSIS OF THE AN RNA NONAMER R(GGUGCGC) D(BRC)R(C) X-RAY DIFFRACTION 4-03-07 K.SHI,B.PAN,M.SUNDARALINGAM RNA DOUBLE HELIX 1.50 synthetic 4AY2 CAPTURING 5' TRI-PHOSPHORYLATED RNA DUPLEX BY RIG-I X-RAY DIFFRACTION 10-03-12 D.LUO,A.M.PYLE HYDROLASE-RNA COMPLEX, INNATE IMMUNITY 2.80 synthetic 2RQC SOLUTION STRUCTURE OF RNA-BINDING DOMAIN 3 OF CUGBP1 IN COMPLEX WITH RNA (UG)3 SOLUTION NMR 8-04-09 K.TSUDA,K.KUWASAKO,M.TAKAHASHI,T.SOMEYA,Y.MUTO,M.INOUE, T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) RRM DOMAIN, RBD, PROTEIN-RNA COMPLEX, TRANSCRIPTION/RNA COMPLEX, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ACTIVATOR, ALTERNATIVE SPLICING, CYTOPLASM, MRNA PROCESSING, NUCLEUS, PHOSPHOPROTEIN, RNA-BINDING synthetic 2GO5 STRUCTURE OF SIGNAL RECOGNITION PARTICLE RECEPTOR (SR) IN COMPLEX WITH SIGNAL RECOGNITION PARTICLE (SRP) AND RIBOSOME NASCENT CHAIN COMPLEX ELECTRON MICROSCOPY 6-13-06 M.HALIC,M.GARTMANN,O.SCHLENKER,T.MIELKE,M.R.POOL,I.SINNING, R.BECKMANN SR, SRP, RIBOSOME, TRANSLATION/RNA COMPLEX 7.40 CANIS SP.,TRITICUM SP. 1EBR STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES SOLUTION NMR 7-07-97 R.D.PETERSON,J.FEIGON RIBONUCLEIC ACID, RNA synthetic 3KNN THE STRUCTURES OF CAPREOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT FOR MOLECULE II X-RAY DIFFRACTION 2-23-10 R.E.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, CAPREOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.45 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,PECTOBACTERIUM WASABIAE WPP163,ESCHERICHIA COLI,synthetic 2UUC STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN. X-RAY DIFFRACTION 5-22-07 A.WEIXLBAUMER,F.V.MURPHY,A.DZIERGOWSKA,A.MALKIEWICZ, F.A.P.VENDEIX,P.F.AGRIS,V.RAMAKRISHNAN TRNA, ZINC, MRNA, CMO5U, RIBOSOME, DECODING, ZINC-FINGER, RNA-BINDING, TRANSLATION, COILED COIL, PAROMOMYCIN, RRNA- BINDING, TRNA-BINDING, METAL-BINDING, MODIFICATIONS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN 3.1 THERMUS THERMOPHILUS,synthetic,synthetic 2LUN RNA APTAMER FOR B. ANTHRACIS RIBOSOMAL PROTEIN S8 SOLUTION NMR 12-18-13 E.P.NIKONOWICZ,J.WANG APTAMER, PROTEIN S8, RIBOSOME, SELEX, NON-CANONICAL BASE PAIRS, RNA synthetic 1LMV SOLUTION STRUCTURE OF THE UNMODIFIED U2 SNRNA-INTRON BRANCH SITE HELIX FROM S. CEREVISIAE SOLUTION NMR 11-27-02 M.I.NEWBY,N.L.GREENBAUM U2 SNRNA, BRANCH SITE, NMR, SOLUTION STRUCTURE, A-FORM HELIX SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 3RTJ CRYSTAL STRUCTURE OF RICIN BOUND WITH DINUCLEOTIDE APG X-RAY DIFFRACTION 8-31-11 A.F.MONZINGO,J.D.ROBERTUS ENZYME-SUBSTRATE COMPLEX, GLYCOSIDASE RIBOSOME-INACTIVATING PROTEIN LECTIN GLYCOPROTEIN, LACTOSE BINDING, GLYCOSYLATION, HYDROLASE, HYDROLASE-RNA COMPLEX 3.00 synthetic 3K5Z CRYSTAL STRUCTURE OF FBF-2/GLD-1 FBEA G4A MUTANT COMPLEX X-RAY DIFFRACTION 11-03-09 Y.WANG,L.OPPERMAN,M.WICKENS,T.M.T.HALL FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE FLIPPING, BASE STACKING 2.40 synthetic 3GX6 CRYSTAL STRUCTURE OF THE T. TENGCONGENSIS SAM-I RIBOSWITCH VARIANT U34C/A94G BOUND WITH SAM IN MANGANESE CHLORIDE X-RAY DIFFRACTION 1-12-10 R.K.MONTANGE,R.T.BATEY KINK-TURN, FOUR-WAY JUNCTION, PSEUDOKNOT, RIBOSWITCH, RNA 2.80 synthetic 3IZ7 MODEL OF THE SMALL SUBUNIT RNA BASED ON A 5.5 A CRYO-EM MAP OF TRITICUM AESTIVUM TRANSLATING 80S RIBOSOME ELECTRON MICROSCOPY 12-01-10 J.-P.ARMACHE,A.JARASCH,A.M.ANGER,E.VILLA,T.BECKER,S.BHUSHAN, F.JOSSINET,M.HABECK,G.DINDAR,S.FRANCKENBERG,V.MARQUEZ,T.MIELKE, M.THOMM,O.BERNINGHAUSEN,B.BEATRIX,J.SOEDING,E.WESTHOF,D.N.WILSON, R.BECKMANN EUKARYOTIC RIBOSOME, HOMOLOGY MODELING, DE NOVO MODELING, RIBOSOMAL RNA, RRNA, RNA EXPANSION SEGMENTS, RIBOSOME 5.50 TRITICUM AESTIVUM,TRITICUM AESTIVUM,TRITICUM AESTIVUM 4GAR ALLOSTERIC CONTROL OF THE RIBOSOME BY SMALL-MOLECULE ANTIBIOTICS X-RAY DIFFRACTION 8-29-12 J.H.D.CATE,A.PULK,S.C.BLANCHARD,L.WANG,M.B.FELDMAN,M.R.WASSERMAN, R.ALTMAN NUCLEIC ACID CONFORMATION, PROTEIN BIOSYNTHESIS, ANTIBIOTIC, NEOMYCIN, AMINOGLYCOSIDE, RRF, RECYCLING, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI 2ZKR STRUCTURE OF A MAMMALIAN RIBOSOMAL 60S SUBUNIT WITHIN AN 80S COMPLEX OBTAINED BY DOCKING HOMOLOGY MODELS OF THE RNA AND PROTEINS INTO AN 8.7 A CRYO-EM MAP ELECTRON MICROSCOPY 5-06-08 P.CHANDRAMOULI,C.W.AKEY PROTEIN-RNA COMPLEX, 60S RIBOSOMAL SUBUNIT, RIBOSOMAL PROTEIN/RNA COMPLEX 8.70 CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS 2CV1 GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU), ATP, AND AN ANALOG OF L-GLUTAMATE: A QUATERNARY COMPLEX X-RAY DIFFRACTION 9-05-06 S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) LIGASE, RNA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE/RNA COMPLEX 2.41 synthetic 3I1M CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE 3.19 ESCHERICHIA COLI 3E1C STRUCTURE OF THE 30S SUBUNIT AND THE TRNAS OF E. COLI RIBOSOME IN POST-ACCOMMODATION STATE ELECTRON MICROSCOPY 8-18-09 B.DEVKOTA,T.R.CAULFIELD,R.-Z.TAN,S.C.HARVEY RIBOSOME, TRANSLATION, ACCOMMODATION, TRNA SELECTION 9.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2JSG NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH 1 MODIFICATION (M6A37) SOLUTION NMR 8-07-07 F.A.P.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM,B.SPROAT, A.MALKIEWICZ,P.F.AGRIS E.COLI, VALINE, TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, N6-METHYLADENOSINE, M6A synthetic 2WH3 INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME). THIS FILE CONTAINS THE 30S SUBUNIT. X-RAY DIFFRACTION 5-19-09 A.WEIXLBAUMER,H.JIN,C.NEUBAUER,R.M.VOORHEES,S.PETRY, A.C.KELLEY,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRNA-BINDING, RRNA-BINDING, METAL-BINDING, RF2, TRNA, ZINC, MRNA, RIBOSOME, RNA-BINDING, ZINC-FINGER, TRANSLATION, COILED COIL, TERMINATION 3.45 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 2OE5 .5 A X-RAY CRYSTAL STRUCTURE OF APRAMYCIN COMPLEX WITH RNA FRAGMENT GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC CONTAINING THE HUMAN RIBOSOMAL DECODING A SITE: RNA CONSTRUCT WITH 3'- OVERHANG X-RAY DIFFRACTION 2-13-07 T.HERMANN,V.TERESHKO,E.SKRIPKIN,D.J.PATEL AMINOGLYCOSIDE ANTIBIOTICS, APRAMYCIN, RIBOSOMAL DECODING SITE, A SITE, HOMO SAPIENS, RNA DUPLEX 1.51 synthetic,synthetic 1YKV CRYSTAL STRUCTURE OF THE DIELS-ALDER RIBOZYME COMPLEXED WITH THE PRODUCT OF THE REACTION BETWEEN N-PENTYLMALEIMIDE AND COVALENTLY ATTACHED 9-HYDROXYMETHYLANTHRACENE X-RAY DIFFRACTION 2-22-05 A.SERGANOV,S.KEIPER,L.MALININA,V.TERESHKO,E.SKRIPKIN, C.HOBARTNER,A.POLONSKAIA,A.T.PHAN,R.WOMBACHER,R.MICURA, Z.DAUTER,A.JASCHKE,D.J.PATEL CARBON-CARBON BOND, CATALYTIC MECHANISM, CRYSTAL STRUCTURE, DIELS-ALDER REACTION, RIBOZYME, RNA 3.30 synthetic,synthetic 4KD8 S RIBOSOME TRANSLOCATION INTERMEDIATE FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT A. THE 50S SUBUNIT A CAN BE FOUND IN 4KD9. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDA (30S) AND 4KDB (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 2Y8W STRUCTURE OF CRISPR ENDORIBONUCLEASE CSE3 BOUND TO 20 NT RNA X-RAY DIFFRACTION 5-18-11 D.G.SASHITAL,M.JINEK,J.A.DOUDNA HYDROLASE-RNA COMPLEX, FERREDOXIN-LIKE 1.80 synthetic 2LKR YEAST U2/U6 COMPLEX SOLUTION NMR 2-22-12 J.E.BURKE,D.G.SASHITAL,X.ZUO,Y.WANG,S.E.BUTCHER -HELIX JUNCTION, RNA synthetic 3M85 ARCHAEOGLOBUS FULGIDUS EXOSOME Y70A WITH RNA BOUND TO THE ACTIVE SITE X-RAY DIFFRACTION 4-28-10 S.HARTUNG,K.-P.HOPFNER EXOSOME, RNA, EXONUCLEASE, HYDROLASE, NUCLEASE, HYDROLASE-RNA COMPLEX 3.00 synthetic 2L8F STRUCTURE OF A 4X4 NUCLEOTIDE RNA INTERNAL LOOP FROM AN R2 RETROTRANSPOSON SOLUTION NMR 8-31-11 Y.LERMAN,S.D.KENNEDY,D.H.TURNER RNA MOTIF, INTERNAL LOOP, 3RRS, RNA synthetic,synthetic 2HGP CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME WITH TRANSLOCATED AND ROTATED SHINE-DALGARNO DUPLEX. THIS ENTRY 2HGP CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGQ. X-RAY DIFFRACTION 11-07-06 L.JENNER,G.YUSUPOVA,B.REES,D.MORAS,M.YUSUPOV RIBOSOME, SHINE-DALGARNO, POST-INITIATION 5.50 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,synthetic 2JR4 NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH NO MODIFICATIONS SOLUTION NMR 7-24-07 F.A.P.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM,B.SPROAT, A.MALKIEWICZ,P.F.AGRIS E.COLI, VALINE, TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN synthetic 3WFR TRNA PROCESSING ENZYME COMPLEX 2 X-RAY DIFFRACTION 1-01-14 S.YAMASHITA,D.TAKESHITA,K.TOMITA TERMINAL NUCLEOTIDE TRANSFERASE, TRANSFERASE-RNA COMPLEX 3.50 THERMOTOGA MARITIMA MSB8,THERMOTOGA MARITIMA MSB8 3NNA CRYSTAL STRUCTURE OF CUGBP1 RRM1/2-RNA COMPLEX X-RAY DIFFRACTION 10-27-10 M.TEPLOVA,J.SONG,H.GAW,A TEPLOV,D.J.PATEL RRM, RNA BINDING, RNA, RNA BINDING PROTEIN-RNA COMPLEX 1.90 HOMO SAPIENS 3BNL CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING A SITE IN THE PRESENCE OF [CO(NH3)6]CL3 X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 2.60 synthetic 2O43 STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE X-RAY DIFFRACTION 12-04-07 E.PYETAN,D.BARAM,T.AUERBACH-NEVO,A.YONATH RIBOSOME, MACROLIDES, RNA 3.60 DEINOCOCCUS RADIODURANS 4G6P MINIMAL HAIRPIN RIBOZYME IN THE PRECATALYTIC STATE WITH A38P VARIATION X-RAY DIFFRACTION 8-15-12 J.A.LIBERMAN,J.L.JENKINS,J.KRUCINSKA,J.E.WEDEKIND RNA, STRUCTURE-ACTIVITY RELATIONSHIP, NUCLEIC ACID CONFORMATION 2.64 synthetic,synthetic,synthetic 3OFC CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CHLORAMPHENICOL. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME WITH CHLORAMPHENICOL BOUND. X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, CHLORAMPHENICOL, RIBOSOME 3.19 ESCHERICHIA COLI,ESCHERICHIA COLI 1B36 SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES SOLUTION NMR 12-23-98 S.E.BUTCHER,T.DIECKMANN,J.FEIGON RIBONUCLEIC ACID, TETRALOOP RECEPTOR, GROUP I INTRON, GROUP II INTRON, RNA SYNTHETIC CONSTRUCT 2ZUE CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG) AND AN ATP ANALOG (ANP) X-RAY DIFFRACTION 8-18-09 M.KONNO,T.SUMIDA,E.UCHIKAWA,Y.MORI,T.YANAGISAWA,S.SEKINE, S.YOKOYAMA RRS/TRNA(ARG)/ATP, AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, CYTOPLASM, LIGASE, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE/RNA COMPLEX 2.00 synthetic 1EXY SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET SOLUTION NMR 5-15-00 F.JIANG,A.GORIN,W.HU,A.MAJUMDAR,S.BASKERVILLE,W.XU, A.ELLINGTON,D.J.PATEL ARGININE-GUANINE SANDWICH, EXTENDED BOUND BASIC REX PEPTIDE, FLAP BASE, JUNCTIONAL BASE TRIPLETS, RNA BINDING POCKET ARCHITECTURE, RNA BINDING PROTEIN/RNA COMPLEX synthetic 2DRB COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINICCA X-RAY DIFFRACTION 11-14-06 K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.80 synthetic 3QRR STRUCTURE OF THERMUS THERMOPHILUS CSE3 BOUND TO AN RNA REPRESENTING A PRODUCT COMPLEX X-RAY DIFFRACTION 5-25-11 M.J.SCHELLENBERG,E.G.GESNER,GARSIDE E.L.,A.M.MACMILLAN PROTEIN-RNA COMPLEX, RAMP DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX 3.10 synthetic 3DIS CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH IN FREE FORM X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV FREE FORM, RIBOSWITCH, RNA 3.10 synthetic 2KFY NMR STRUCTURE OF THE FIRST QRRM OF HNRNP F IN COMPLEX WITH AGGGAU G- TRACT RNA SOLUTION NMR 6-09-10 F.H.T.ALLAIN,C.DOMINGUEZ PROTEIN-RNA COMPLEX, G TRACT, SPLICING REGULATION, POLYADENYLATION REGULATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, RNA BINDING PROTEIN-RNA COMPLEX synthetic 4EJC CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G299A. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT. X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATION, RAM, 30S, 70S, 50S, RIBOSOMAL SUBUNIT, RIBOSOME 3.52 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1S9S SOLUTION STRUCTURE OF MLV PSI SITE SOLUTION NMR 4-06-04 V.D'SOUZA,A.DEY,D.HABIB,M.F.SUMMERS MLV, A-MINOR K-TURN, STEM LOOP, BULGE, G-U MISMATCH, G-A MISMATCH, U-U MISMATCH, A-C MISMATCH, RNA synthetic 4EJB CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G299A.THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT. X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATION, RAM, 30S, 70S, 50S, RIBOSOMAL SUBUNIT, RIBOSOME 3.52 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2ATW STRUCTURE OF A MYCOBACTERIUM TUBERCULOSIS NUSA-RNA COMPLEX X-RAY DIFFRACTION 10-11-05 B.BEUTH,S.PENNELL,K.B.ARNVIG,S.R.MARTIN,I.A.TAYLOR PROTEIN-RNA COMPLEX, TRANSCRIPTION/RNA COMPLEX 2.25 synthetic 2WW9 CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME ELECTRON MICROSCOPY 12-08-09 T.BECKER,E.MANDON,S.BHUSHAN,A.JARASCH,J.P.ARMACHE,S.FUNES, F.JOSSINET,J.GUMBART,T.MIELKE,O.BERNINGHAUSEN,K.SCHULTEN, E.WESTHOF,R.GILMORE,R.BECKMANN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSMEMBRANE, PHOSPHOPROTEIN, SIGNAL SEQUENCE, MEMBRANE, RIBOSOME, CYTOPLASM, TRANSPORT, ACETYLATION, RNA-BINDING, RRNA-BINDING, TRANSLOCATION, PROTEIN CONDUCTING CHANNEL, PROTEIN EXIT TUNNEL, ENDOPLASMIC RETICULUM, COTRANSLATIONAL PROTEIN TRANSLOCATION, UBL CONJUGATION, ISOPEPTIDE BOND, PROTEIN TRANSPORT 8.60 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 3J5F E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST3A, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 20.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3J46 STRUCTURE OF THE SECY PROTEIN TRANSLOCATION CHANNEL IN ACTION ELECTRON MICROSCOPY 10-23-13 C.W.AKEY,E.PARK,J.F.MENETRET,J.C.GUMBART,S.J.LUDTKE,W.LI,A.WHYNOT, T.A.RAPOPORT S, PREPROTEIN TRANSLOCASE, SECYEG, PROTEIN TRANSLOCATION CHANNEL, NASCENT CHAIN, RIBOSOME-PROTEIN TRANSPORT COMPLEX 10.10 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1PN8 COORDINATES OF S12, L11 PROTEINS AND E-SITE TRNA FROM 70S CRYSTAL STRUCTURE SEPARATELY FITTED INTO THE CRYO-EM MAP OF E.COLI 70S.EF-G.GDPNP COMPLEX. THE ATOMIC COORDINATES ORIGINALLY FROM THE E-SITE TRNA WERE FITTED IN THE POSITION OF THE HYBRID P/E-SITE TRNA. ELECTRON MICROSCOPY 7-15-03 M.VALLE,A.ZAVIALOV,J.SENGUPTA,U.RAWAT,M.EHRENBERG,J.FRANK RIBOSOMAL PROTEIN, TRNA BINDING PROTEIN, TRNA, RNA BINDING PROTEIN/RNA COMPLEX 10.80 synthetic 3ZD4 FULL-LENGTH HAMMERHEAD RIBOZYME WITH G12A SUBSTITUTION AT THE GENERAL BASE POSITION X-RAY DIFFRACTION 12-12-12 W.G.SCOTT,E.SCHULTZ RNA, GENERAL BASE CATALYSIS 2.20 SYNTHETIC CONSTRUCT 4FTB CRYSTAL STRUCTURE OF THE AUTHENTIC FLOCK HOUSE VIRUS PARTICLE X-RAY DIFFRACTION 8-01-12 J.A.SPEIR,Z.CHEN,V.S.REDDY,J.E.JOHNSON VIRUS, FLOCK HOUSE VIRUS, NODAVIRUS, RNA, BETA-BARREL, JELLYROLL, ASPARTYL PROTEASE, CAPSID PROTEIN, HYDROLASE, AUTOPROTEOLYSIS, VIRION, ICOSAHEDRAL VIRUS 2.70 FLOCK HOUSE VIRUS 1JGQ THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY X-RAY DIFFRACTION 7-20-01 G.Z.YUSUPOVA,M.M.YUSUPOV,J.H.D.CATE,H.F.NOLLER RIBOSOME ASSEMBLY, PROTEIN SYNTHESIS, LIFE 5.00 THERMUS THERMOPHILUS,synthetic,synthetic,synthetic 3OG8 CRYSTAL STRUCTURE OF HUMAN RIG-I CTD BOUND TO A 14-BP BLUNT-ENDED DSRNA X-RAY DIFFRACTION 11-03-10 P.LI INNATE IMMUNITY, VIRAL RNA SENSING, RNA BINDING DOMAIN, IPS-1, CYTOSOLIC, HYDROLASE-RNA COMPLEX 2.40 synthetic 2BH2 CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SUBSTRATE AND S-ADENOSYLHOMOCYSTEINE. X-RAY DIFFRACTION 3-30-05 T.T.LEE,S.AGARWALLA,R.M.STROUD IRON-SULFUR CLUSTER, METHYLTRANSFERASE, RNA MODIFICATION, RNA PROCESSING, TRANSFERASE, RUMA, BASE FLIPPING, SAM, OB- FOLD, PROTEIN-RNA COMPLEX, BASE STACKING, SUBSTRATE SELECTIVITY, GENERAL BASE, PRODUCT RELEASE, 4FE-4S, DIRECT PROTEIN SEQUENCING, METAL-BINDING 2.15 ESCHERICHIA COLI 4B3R STRUCTURE OF RIBOSOME 30S-ETH-48 COMPLEX X-RAY DIFFRACTION 8-07-13 C.L.NG,K.LANG,D.SHCHERBAKOV,T.MATT,D.PEREZ-FERNANDEZ,R.PATAK,M.MEYER, S.DUSCHA,R.AKBERGENOV,H.BOUKARI,P.FREIHOFER,I.KUDYBA,M.S.K.REDDY, R.S.NANDURIKAR,V.RAMAKRISHNAN,A.VASELLA,E.C.BOTTGER RIBOSOME, AMINOGLYCOSIDE, ANTIBIOTIC 3.0 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 4AL6 CRYSTAL STRUCTURE OF THE S148ACSY4-CRRNA COMPLEX X-RAY DIFFRACTION 6-13-12 R.E.HAURWITZ,S.H.STERNBERG,J.A.DOUDNA HYDROLASE-RNA COMPLEX, CRISPR 2.63 PSEUDOMONAS AERUGINOSA 3H5X CRYSTAL STRUCTURE OF 2'-AMINO-2'-DEOXY-CYTIDINE-5'- TRIPHOSPHATE BOUND TO NOROVIRUS GII RNA POLYMERASE X-RAY DIFFRACTION 5-19-09 D.F.ZAMYATKIN,F.PARRA,A.MACHIN,P.GROCHULSKI,K.K.S.NG POLYMERASE-RNA COMPLEX, NON-NATURAL NUCLEOSIDE TRIPHOSPHATE ANALOG, CALICIVIRUS, HYDROLASE, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, PROTEASE, RNA REPLICATION, RNA- DIRECTED RNA POLYMERASE, THIOL PROTEASE, TRANSFERASE, TRANSFERASE/RNA COMPLEX 1.77 synthetic,synthetic 2VRT CRYSTAL STRUCTURE OF E. COLI RNASE E POSSESSING M1 RNA FRAGMENTS - CATALYTIC DOMAIN X-RAY DIFFRACTION 7-22-08 D.J.KOSLOVER,A.J.CALLAGHAN,M.J.MARCAIDA,E.F.GARMAN, M.MARTICK,W.G.SCOTT,B.F.LUISI RNA PROCESSING, M1 RNA, RNASE P, NUCLEASE, HYDROLASE, CYTOPLASM, RNA-BINDING, RNA TURNOVER, ENDONUCLEASE 3.5 ESCHERICHIA COLI,ESCHERICHIA COLI 1JID HUMAN SRP19 IN COMPLEX WITH HELIX 6 OF HUMAN SRP RNA X-RAY DIFFRACTION 10-19-01 K.WILD,I.SINNING,S.CUSACK SIGNAL RECOGNITION PARTICLE (SRP), PROTEIN-RNA COMPLEX, GGAG TETRALOOP, SIGNALING PROTEIN/RNA COMPLEX 1.80 synthetic 4BYD STRUCTURE OF THERMUS THERMOPHILUS 30S RIBOSOME X-RAY DIFFRACTION 8-28-13 S.FENG,Y.CHEN,K.KAMADA,H.WANG,K.TANG,M.WANG,Y.G.GAO RIBOSOME, TOXIN-ANTITOXIN, RIBOSOME-DEPENDENT NUCLEASE, MRNA DEGRADATION, QUALITY CONTROL, TRANSLATION REGULATION 3.35 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3KTW CRYSTAL STRUCTURE OF THE SRP19/S-DOMAIN SRP RNA COMPLEX OF SULFOLOBUS SOLFATARICUS X-RAY DIFFRACTION 2-16-10 K.WILD,G.BANGE,G.BOZKURT,I.SINNING RIBONUCLEOPROTEIN COMPLEX, RNA-RNA TERTIARY INTERACTIONS, ASYMMETRIC LOOP, 7S RNA, SIGNAL RECOGNITION PARTICLE, STRUCTURAL RNA, RNA-BINDING, RNA-RNA BINDING PROTEIN COMPLEX 3.20 SULFOLOBUS SOLFATARICUS 3D0U CRYSTAL STRUCTURE OF LYSINE RIBOSWITCH BOUND TO LYSINE X-RAY DIFFRACTION 7-01-08 A.D.GARST,A.HEROUX,R.P.RAMBO,R.T.BATEY RNA-LIGAND COMPLEX, RIBOSWITCH 2.80 synthetic 1SJ4 CRYSTAL STRUCTURE OF A C75U MUTANT HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR, IN CU2+ SOLUTION X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.CATE,J.A.DOUDNA HDV; RIBOZYME; RNA; U1A; PRECUROSR, TRANSLATION/RNA COMPLEX 2.70 HEPATITIS DELTA VIRUS 4E5C CRYSTAL STRUCTURE OF 19MER DOUBLE-HELICAL RNA CONTAINING CUG/CGG- REPEATS X-RAY DIFFRACTION 7-11-12 L.MALININA,A.POPOV,J.TAMJAR SIRNA, TRINUCLEOTIDE REPEAT EXPANSION, RNA 1.70 synthetic 2R7X CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (UGUGACC)/GTP COMPLEX X-RAY DIFFRACTION 7-29-08 X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 2.80 SIMIAN ROTAVIRUS 2ADC SOLUTION STRUCTURE OF POLYPYRIMIDINE TRACT BINDING PROTEIN RBD34 COMPLEXED WITH CUCUCU RNA SOLUTION NMR 10-04-05 F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS,A.HENNING, P.WENTER,L.REYMOND,S.PITSCH,D.L.BLACK,F.H.T.ALLAIN RBD, RRM, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX HOMO SAPIENS 1VQK THE STRUCTURE OF CCDA-PHE-CAP-BIO BOUND TO THE A SITE OF THE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.30 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 1SLO FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 12-07-96 N.L.GREENBAUM,I.RADHAKRISHNAN,D.J.PATEL,D.HIRSH SPLICE DONOR SITE, STEM-LOOP, RIBONUCLEIC ACID, RNA CAENORHABDITIS ELEGANS 2R7S CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1 / RNA (UGUGCC) COMPLEX X-RAY DIFFRACTION 7-29-08 X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 3.24 SIMIAN ROTAVIRUS 2QUW HAMMERHEAD RIBOZYME G12A MUTANT AFTER CLEAVAGE X-RAY DIFFRACTION 7-15-08 Y.I.CHI,W.G.SCOTT,S.H.KIM HAMMERHEAD RIBOZYME, RIBOZYME, CATALYTIC RNA, RIBOZYME- PRODUCT COMPLEX 2.20 synthetic,synthetic 4KRF STRUCTURE OF HUMAN ARGONAUTE-1 LET-7 COMPLEX X-RAY DIFFRACTION 6-19-13 C.R.FAEHNLE,E.ELKAYAM,L.JOSHUA-TOR EUKARYOTIC ARGONAUTE, GENE REGULATION, RNAI, SLICER, TRANSCRIPTION- RNA COMPLEX 2.10 synthetic 3J52 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN CLASSIC PRE- TRANSLOCATION STATE (PRE1A, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1JGO THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY X-RAY DIFFRACTION 7-20-01 G.Z.YUSUPOVA,M.M.YUSUPOV,J.H.D.CATE,H.F.NOLLER RIBOSOME ASSEMBLY, PROTEIN SYNTHESIS, LIFE 5.60 THERMUS THERMOPHILUS,synthetic,synthetic,synthetic 1ASZ THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION X-RAY DIFFRACTION 5-08-95 J.CAVARELLI,B.REES,J.C.THIERRY,D.MORAS COMPLEX (AMINOACYL-TRNA SYNTHASE/TRNA) 3.00 synthetic 3OFZ CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CLINDAMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME BOUND TO CLINDAMYCIN. X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, CLINDAMYCIN, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, RIBOSOME 3.29 ESCHERICHIA COLI,ESCHERICHIA COLI 2DQP STRUCTURAL ANALYSES OF DNA:DNA AND RNA:DNA DUPLEXES CONTAINING 5-(N-AMINOHEXYL)CARBAMOYL MODIFIED URIDINES X-RAY DIFFRACTION 4-17-07 E.C.M.JUAN,J.KONDO,T.ITO,Y.UENO,A.MATSUDA,A.TAKENAKA MODIFIED NUCLEOTIDE, 5-(N-AMINOHEXYL)CARBAMOYL-2'-O- METHYLURIDINE, A-FORM RNA:DNA HYBRID DUPLEX, DNA-RNA HYBRID 2.10 synthetic 1YG3 SOLUTION STRUCTURE OF THE SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, 20 LOWEST ENERGY STRUCTURES SOLUTION NMR 12-13-05 P.V.CORNISH,M.HENNIG,D.P.GIEDROC RNA PSEUDOKNOT; RIBOSOMAL FRAMESHIFTING; PROTONATED CYTIDINE synthetic 2X1A STRUCTURE OF RNA15 RRM WITH RNA BOUND (G) X-RAY DIFFRACTION 2-02-10 C.PANCEVAC,D.C.GOLDSTONE,A.RAMOS,I.A.TAYLOR TRANSCRIPTION-RNA COMPLEX, TRANSLATION, NUCLEUS, RNA-BINDING, MRNA PROCESSING 2.05 synthetic 2L8U NMR SPECTROSCOPY AND MOLECULAR DYNAMICS SIMULATION OF R(CCGCUGCGG)2 REVEAL A DYNAMIC UU INTERNAL LOOP FOUND IN MYOTONIC DYSTROPHY TYPE 1 - UU PAIR WITH ONE HYDROGEN BOND PAIR SOLUTION NMR 2-23-11 R.PARKESH,M.A.FOUNTAIN,M.D.DISNEY UU MISMATCH, RNA synthetic 3NNH CRYSTAL STRUCTURE OF THE CUGBP1 RRM1 WITH GUUGUUUUGUUU RNA X-RAY DIFFRACTION 10-27-10 M.TEPLOVA,J.SONG,H.GAW,A TEPLOV,D.J.PATEL RNA RECOGNITION MOTIF, PRE-MRNA SPLICING, RNA, RNA BINDING PROTEIN- RNA COMPLEX 2.75 HOMO SAPIENS 1FEU CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA. X-RAY DIFFRACTION 6-25-01 R.V.FEDOROV,V.A.MESHCHERYAKOV,G.M.GONGADZE,N.P.FOMENKOVA, N.A.NEVSKAYA,M.SELMER,M.LAURBERG,O.KRISTENSEN,S.AL- KARADAGHI,A.LILJAS,M.B.GARBER,S.V.NIKONOV GENERAL STRESS PROTEIN CTC, 5S RRNA-PROTEIN COMPLEX, CADMIUM IONS, RIBOSOME 2.30 synthetic,synthetic 4A3L RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 7NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.60 SACCHAROMYCES CEREVISIAE 3UZ4 CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX WITH PAROMOMYCIN. X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 2QQP CRYSTAL STRUCTURE OF AUTHENTIC PROVIDENCE VIRUS X-RAY DIFFRACTION 1-20-09 J.A.SPEIR,D.J.TAYLOR,J.E.JOHNSON VIRUS, CAPSID, COAT PROTEIN, PROTEIN-RNA COMPLEX, BETA BARREL, IG- LIKE DOMAIN, TETRAVIRUS, TETRAVIRIDAE, ICOSAHEDRAL VIRUS, QUASIEQUIVALENCE, AUTO-CATALYTIC CLEAVAGE, AUTO PROTEOLYSIS 3.80 synthetic 1EI2 STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS SOLUTION NMR 3-06-00 L.VARANI,M.G.SPILLANTINI,M GOEDERT,G.VARANI NMR, RNA, TAU, FRONTOTEMPORAL DEMENTIA FTDP-17, INTRONIC MUTATIONS, AMINOGLYCOSIDE, RNA MAJOR GROOVE RECOGNITION synthetic 1SJ3 HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH MG2+ BOUND X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.CATE,J.A.DOUDNA HDV; RIBOZYME; RNA; U1A; PRECUROSR, TRANSLATION/RNA COMPLEX 2.20 HEPATITIS DELTA VIRUS 1LNG CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII X-RAY DIFFRACTION 6-07-02 T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON PROTEIN-RNA COMPLEX, SIGNALING PROTEIN/RNA COMPLEX 2.30 METHANOCALDOCOCCUS JANNASCHII 1FEQ NMR SOLUTION STRUCTURE OF THE ANTICODON OF TRNA(LYS3) WITH T6A MODIFICATION AT POSITION 37 SOLUTION NMR 11-22-00 J.W.STUART,Z.GDANIEC,R.H.GUENTHER,M.MARSZALEK,E.SOCHACKA, A.MALKIEWICZ,P.F.AGRIS TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, T6A synthetic 2QOW CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH SPECTINOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, ANTIBIOTIC RESISTANCE, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, METHYLATION, TRNA-BINDING, ENDONUCLEASE, HYDROLASE, NUCLEASE, RIBOSOME 3.93 ESCHERICHIA COLI 1KD4 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2, BARIUM FORM X-RAY DIFFRACTION 3-04-03 V.KACER,S.A.SCARINGE,J.N.SCARSDALE,J.P.RIFE RNA DUPLEX, METAL BINDING 1.85 synthetic 2VNU CRYSTAL STRUCTURE OF SC RRP44 X-RAY DIFFRACTION 4-08-08 E.LORENTZEN,J.BASQUIN,E.CONTI RRNA PROCESSING, RNA DEGRADATION, CYTOPLASM, RNA-BINDING, EXONUCLEASE, RNA PROCESSING, RRP44, DIS3P, EXOSOME, NUCLEUS, NUCLEASE, HYDROLASE 2.30 SACCHAROMYCES CEREVISIAE 4GPW CRYSTAL STRUCTURE OF THE PROTOZOAL CYTOPLASMIC RIBOSOMAL DECODING SITE IN COMPLEX WITH 6'-HYDROXYSISOMICIN (P21212 FORM) X-RAY DIFFRACTION 4-03-13 J.KONDO,M.KOGANEI,J.P.MAIANTI,V.L.LY,S.HANESSIAN RIBOSOME, AMINOGLYCOSIDE, RNA-ANTIBIOTIC COMPLEX, ANTIPROTOZOAL ACTIVITY, ANTIBACTERIAL ACTIVITY 3.00 synthetic 3PU1 CRYSTAL STRUCTURE OF A VESICULAR STOMATITIS VIRUS NUCLEOCAPSID-POLYG COMPLEX X-RAY DIFFRACTION 1-12-11 M.LUO,T.J.GREEN,M.ROWSE RNA, NUCLEOCAPSID, VIRAL PROTEIN-RNA COMPLEX 3.14 synthetic 3IVK CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF AN RNA POLYMERASE RIBOZYME COMPLEXED WITH AN ANTIGEN BINDING ANTIBODY FRAGMENT X-RAY DIFFRACTION 3-02-10 Y.KOLDOBSKAYA,E.M.DUGUID,D.M.SHECHNER,S.KOIDE, A.A.KOSSIAKOFF,D.P.BARTEL,J.A.PICCIRILLI CATALYTIC RNA, PROTEIN RNA COMPLEX, RNA POLYMERASE RIBOZYME, RNA HAIRPIN EPITOPE, IMMUNE SYSTEM - RNA COMPLEX 3.10 synthetic 2PXV VARIANT 6 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.00 synthetic 1IKD ACCEPTOR STEM, NMR, 30 STRUCTURES SOLUTION NMR 4-01-97 A.RAMOS,G.VARANI NUCLEIC ACIDS (DNA/RNA), RIBONUCLEIC ACID, NMR synthetic 1QRS GLUTAMINYL-TRNA SYNTHETASE MUTANT D235N COMPLEXED WITH GLUTAMINE TRANSFER RNA X-RAY DIFFRACTION 12-07-96 J.G.ARNEZ,T.A.STEITZ AMINOACYL-TRNA SYNTHASE, PROTEIN BIOSYNTHESIS, LIGASE, ATP- B, COMPLEX (AMINOACYL-TRNA SYNTHASE/TRNA), LIGASE/RNA COMPLEX 2.60 ESCHERICHIA COLI 4FY3 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 3AGV CRYSTAL STRUCTURE OF A HUMAN IGG-APTAMER COMPLEX X-RAY DIFFRACTION 11-10-10 Y.NOMURA,S.SUGIYAMA,T.SAKAMOTO,S.MIYAKAWA,H.ADACHI,K.TAKANO, S.MURAKAMI,T.INOUE,Y.MORI,Y.NAKAMURA,H.MATSUMURA IGG, RNA APTAMER, IMMUNE SYSTEM-RNA COMPLEX 2.15 synthetic 4A3E RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.40 SACCHAROMYCES CEREVISIAE 3SKL CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, IRIDIUM HEXAMMINE SOAK X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV THREE WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA 2.90 synthetic 3DIL CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 1.90 synthetic 3SKT CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, MANGANESE SOAK X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV THREE-WAY JUNCTION, RIBOSWITCH, 2'-DEOXY-GUANOSINE, RNA 3.10 synthetic 2MER STRUCTURE OF HELIX 69 FROM ESCHERICHIA COLI 23S RIBOSOMAL RNA SOLUTION NMR 1-01-14 J.JIANG,R.ADURI,C.S.CHOW,J.SANTALUCIA PSEUDOURIDINE, HELIX 69, RIBOSOMAL, RNA synthetic 2KD4 SOLUTION STRUCTURE AND THERMODYNAMICS OF 2',5' RNA INTERCALATION SOLUTION NMR 4-07-09 E.D.HOROWITZ,S.LILAVIVAT,B.W.HOLLADAY,M.W.GERMANN,N.V.HUD PROFLAVINE, NMR, INTERCALATION, 2',5' RNA, RNA, NEAREST- NEIGHBOR EXCLUSION synthetic 2NUG CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 1.7-ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-20-07 J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI RIBONUCLEASE III, DSRNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 1.70 synthetic,synthetic 2GIC CRYSTAL STRUCTURE OF A VESICULAR STOMATITIS VIRUS NUCLEOCAPSID-RNA COMPLEX X-RAY DIFFRACTION 8-22-06 T.J.GREEN,X.ZHANG,G.W.WERTZ,M.LUO NUCLEOCAPSID, PROTEIN-RNA COMPLEX, NEGATIVE STRAND VIRUS, VIRUS/VIRAL PROTEIN/RNA COMPLEX 2.92 synthetic 4K4X COXSACKIEVIRUS B3 POLYMERASE ELONGATION COMPLEX (R2_FORM), RNA X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.37 synthetic,synthetic,synthetic 2QEX NEGAMYCIN BINDS TO THE WALL OF THE NASCENT CHAIN EXIT TUNNEL OF THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 9-30-08 S.J.SCHROEDER,G.BLAHA LARGE RIBOSOMAL SUBUNIT, 50S, NEGAMYCIN, HALOARCULA MARISMORTUI, RIBOSOME 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3K0J CRYSTAL STRUCTURE OF THE E. COLI THIM RIBOSWITCH IN COMPLEX WITH THIAMINE PYROPHOSPHATE AND THE U1A CRYSTALLIZATION MODULE X-RAY DIFFRACTION 12-22-09 N.KULSHINA,T.E.EDWARDS,A.R.FERRE-D'AMARE RIBOSWITCH, RNA, THI-BOX, THIM, U1A PROTEIN, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, RNA/RNA BINDING PROTEIN COMPLEX 3.10 synthetic 2Q66 STRUCTURE OF YEAST POLY(A) POLYMERASE WITH ATP AND OLIGO(A) X-RAY DIFFRACTION 8-28-07 A.BOHM,P.BALBO PROTEIN RNA COMPLEX ATP POLYMERASE COMPLEX, TRANSFERASE/RNA COMPLEX 1.80 synthetic 1C0A CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX X-RAY DIFFRACTION 11-23-99 S.EILER,A.-C.DOCK-BREGEON,L.MOULINIER,J.-C.THIERRY,D.MORAS PROTEIN-RNA COMPLEX, LIGASE/RNA COMPLEX 2.40 ESCHERICHIA COLI 3PO2 ARRESTED RNA POLYMERASE II ELONGATION COMPLEX X-RAY DIFFRACTION 3-02-11 A.C.M.CHEUNG,P.CRAMER RNA POLYMERASE II, MRNA, TRANSCRIPTION, ARREST, BACKTRACKING, CLEAVAGE, TRANSFERASE-DNA-RNA COMPLEX 3.30 synthetic 4BY7 ELONGATING RNA POLYMERASE II-BYE1 TLD COMPLEX X-RAY DIFFRACTION 9-11-13 K.KINKELIN,G.G.WOZNIAK,S.B.ROTHBART,M.LIDSCHREIBER,B.D.STRAHL, P.CRAMER RNA POLYMERASE II, BYE1, TRANSCRIPTION 3.15 SYNTHETIC CONSTRUCT 3QSU STRUCTURE OF STAPHYLOCOCCUS AUREUS HFQ IN COMPLEX WITH A7 RNA X-RAY DIFFRACTION 9-12-12 R.BRENNAN,N.HORSTMANN,T.M.LINK HEXAMER, SM/LSM FAMILY, RNA CHAPERONE, TRANSLATIONAL REGULATOR, MRNA, SRNA, CYTOPLASMA, CHAPERONE-RNA COMPLEX 2.20 synthetic 3ORB CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CEM-101. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME BOUND TO CEM-101. X-RAY DIFFRACTION 10-06-10 J.A.DUNKLE,W.ZHANG,J.H.D.CATE,A.S.MANKIN PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, MACROLIDE, KETOLIDE, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, RIBOSOME 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI 2GQ5 CRYSTAL STRUCTURE OF AN RNA RACEMATE X-RAY DIFFRACTION 6-27-06 W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL, V.A.ERDMANN DOUBLE HELIX, RACEMATE, RNA 1.40 synthetic,synthetic 1GID CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING X-RAY DIFFRACTION 12-31-96 J.H.CATE,A.R.GOODING,E.PODELL,K.ZHOU,B.L.GOLDEN,C.E.KUNDROT, T.R.CECH,J.A.DOUDNA RNA, P4-P6 RIBOZYME DOMAIN OF THE TETRAHYMENA GROUP I INTRON 2.50 SYNTHETIC CONSTRUCT 4JI7 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING 3.50 THERMUS THERMOPHILUS 2RPK SOLUTION STRUCTURE OF DOMAIN II OF THE POSITIVE POLARITY CCHMVD HAMMERHEAD RIBOZYME SOLUTION NMR 12-30-08 J.GALLEGO,D.DUFOUR,M.DE LA PENA,S.GAGO,R.FLORES HAMMERHEAD RIBOZYME, VIROID, CCHMVD, HEXALOOP, RNA synthetic 1KKS STRUCTURE OF THE HISTONE MRNA HAIRPIN REQUIRED FOR CELL CYCLE REGULATION OF HISTONE GENE EXPRESSION SOLUTION NMR 3-13-02 K.ZANIER,I.LUYTEN,C.CROMBIE,B MULLER,D.SCHUEMPERLI, J.P.LINGE,M.NILGES,M.SATTLER RNA HAIRPIN, HISTONE MRNA, RNA PROCESSING synthetic 2TOB SOLUTION STRUCTURE OF THE TOBRAMYCIN-RNA APTAMER COMPLEX, NMR, 13 STRUCTURES SOLUTION NMR 6-22-99 L.JIANG,D.J.PATEL AMINOGLYCOSIDE-RNA RECOGNITION, TOBRAMYCIN synthetic 3HTX CRYSTAL STRUCTURE OF SMALL RNA METHYLTRANSFERASE HEN1 X-RAY DIFFRACTION 9-29-09 Y.HUANG,L.-J.JI,Q.-C.HUANG,D.G.VASSYLYEV,X.-M.CHEN,J.-B.MA HEN1, SMALL RNA METHYLTRANSFERASE, PROTEIN-RNA COMPLEX, SAM BINDING PROTEIN, TRANSFERASE/RNA COMPLEX 3.10 synthetic,synthetic 1VQ4 THE STRUCTURE OF THE TRANSITION STATE ANALOGUE "DAA" BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 4L6K CRYSTAL STRUCTURE OF BLASTICIDIN S BOUND TO THERMUS THERMOPHILUS 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT, TRNA AND MRNA MOLECULES FROM THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 7-31-13 E.SVIDRITSKIY,A.A.KOROSTELEV TRANSLATION TERMINATION, PEPTIDYL TRANSFER, RIBOSOMAL CRYSTAL STRUCTURE, TRANSLATION INHIBITOR, BLASTICIDIN S, RIBOSOME 3.40 THERMUS THERMOPHILUS,ESCHERICHIA COLI,SYNTHETIC DNA 435D '-R(*UP*AP*GP*CP*CP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' X-RAY DIFFRACTION 6-14-99 U.MUELLER,H.SCHUEBEL,M.SPRINZL,U.HEINEMANN BASE-PAIR TRNA ALA ACCEPTOR STEM C70 MUTANT, DOUBLE HELIX 1.40 synthetic,synthetic 3J12 STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (50S RIBOSOME OF CLASS 5 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI 1HS2 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAGU AS PART OF HAIRPIN R(GCGUUAAGUCGCA) SOLUTION NMR 8-29-01 H.ZHANG,M.A.FOUNTAIN,T.R.KRUGH RIBONUCLEIC ACID, HAIRPIN LOOP, RNA STRUCTURE, 30S RIBOSOME synthetic 1HR0 CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 1-24-01 A.P.CARTER,W.M.CLEMONS JR.,D.E.BRODERSEN,R.J.MORGAN-WARREN, B.T.WIMBERLY,V.RAMAKRISHNAN S, RIBOSOMAL SUBUNIT, RIBOSOME, INITIATION FACTOR, IF1 3.20 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3Q0N CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH ERK2 NRE X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.40 synthetic 1JP0 NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P RNA REFINED WITHOUT RESIDUAL DIPOLAR COUPLINGS SOLUTION NMR 5-01-02 T.C.LEEPER,F.J.SCHMIDT,S.R.VAN DOREN RIBONUCLEIC ACID, RNASE P, HAIRPIN, RESIDUAL DIPOLAR COUPLING REFINEMENT, UGNRAU synthetic 3J2B DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 13.60 ESCHERICHIA COLI 3J0E MODELS FOR THE T. THERMOPHILUS RIBOSOME RECYCLING FACTOR AND THE E. COLI ELONGATION FACTOR G BOUND TO THE E. COLI POST-TERMINATION COMPLEX ELECTRON MICROSCOPY 4-25-12 T.YOKOYAMA,T.R.SHAIKH,N.IWAKURA,H.KAJI,A.KAJI,R.K.AGRAWAL RIBOSOME, RIBOSOME RECYCLING FACTOR, ELONGATION FACTOR G, TRANSLATION 9.90 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 4M6D CRYSTAL STRUCTURE OF THE APTAMER MINF-LYSOZYME COMPLEX. X-RAY DIFFRACTION 12-11-13 V.N.MALASHKEVICH,F.C..PADLAN,R.TORO,M.GIRVIN,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, PSI- BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, HYDROLASE-RNA COMPLEX 2.68 synthetic 2XG2 STRUCTURE OF CYTOTOXIC DOMAIN OF COLICIN E3 BOUND TO THE 70S RIBOSOME (PART 4 OF 4) X-RAY DIFFRACTION 9-22-10 C.L.NG,K.LANG,N.A.G.MEENAN,A.SHARMA,A.C.KELLEY,C.KLEANTHOUS, V.RAMAKRISHNAN RIBOSOME 3.20 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 379D THE STRUCTURAL BASIS OF HAMMERHEAD RIBOZYME SELF-CLEAVAGE X-RAY DIFFRACTION 2-11-98 J.B.MURRAY,D.P.TERWEY,L.MALONEY,A.KARPEISKY,N.USMAN, L.BEIGELMAN,W.G.SCOTT RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP 3.10 synthetic,synthetic 2NOQ STRUCTURE OF RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES RNA ELECTRON MICROSCOPY 11-21-06 M.SCHULER,S.R.CONNELL,A.LESCOUTE,J.GIESEBRECHT,M.DABROWSKI, B.SCHROEER,T.MIELKE,P.A.PENCZEK,E.WESTHOF,C.M.T.SPAHN IRES RNA, RIBOSOME, TRANSLATION, INTERNAL INITIATION 7.30 synthetic,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 2K64 NMR SOLUTION STRUCTURE OF THE D3'-HAIRPIN INCLUDING EBS1 TOGETHER WITH IBS1 OF THE GROUP II INTRON SC.AI5(GAMMA) SOLUTION NMR 7-14-09 D.KRUSCHEL,R.K.O.SIGEL GROUP II INTRON, RIBOZYME, SPLICING, EXON BINDING SITE 1, EBS1, INTRON BINDING SITE 1, IBS1, METAL ION, MAGNESIUM, RNA 29-MER, RNA 7-MER, HAIRPIN, NMR synthetic,synthetic 3UZL CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX WITH PAROMOMYCIN X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 4C4Q CRYO-EM MAP OF THE CSFV IRES IN COMPLEX WITH THE SMALL RIBOSOMAL 40S SUBUNIT AND DHX29 ELECTRON MICROSCOPY 10-30-13 Y.HASHEM,A.DESGEORGES,V.DHOTE,R.LANGLOIS,H.Y.LIAO,R.A.GRASSUCCI, T.V.PESTOVA,C.U.T.HELLEN,J.FRANK RNA, INTERNAL RIBOSOMAL ENTRY SITE, 5'-END INDEPENDENT INITIATION, HCV-LIKE IRES 8.50 CLASSICAL SWINE FEVER VIRUS 28SR NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA SOLUTION NMR 4-20-99 U.SCHMITZ,T.L.JAMES,P.LUKAVSKY,P.WALTER NMR OF RNA, SRP, 4.5S RNA, RNA STRUCTURE, COMPLETE RELAXATION MATRIX ANALYSIS ESCHERICHIA COLI 3J5O VISUALIZATION OF TWO TRNAS TRAPPED IN TRANSIT DURING EF-G-MEDIATED TRANSLOCATION (50S SUBUNIT) ELECTRON MICROSCOPY 12-11-13 D.J.F.RAMRATH,L.LANCASTER,T.SPRINK,T.MIELKE,J.LOERKE,H.F.NOLLER, C.M.T.SPAHN TRANSLOCATION INTERMEDIATE, EF-G, HEAD SWIVELING, RIBOSOME- TRANSLATION COMPLEX 6.80 ESCHERICHIA COLI,ESCHERICHIA COLI 1D6K NMR SOLUTION STRUCTURE OF THE 5S RRNA E-LOOP/L25 COMPLEX SOLUTION NMR 11-22-99 M.STOLDT,J.WOHNERT,O.OHLENSCHLAGER,M.GORLACH,L.R.BROWN PROTEIN-RNA COMPLEX, RIBOSOME ESCHERICHIA COLI 1SLP FIRST STEM LOOP OF THE SL1 RNA FROM CAENORHABDITIS ELEGANS, NMR, 16 STRUCTURES SOLUTION NMR 4-21-97 N.L.GREENBAUM,I.RADHAKRISHNAN,D.J.PATEL,D.HIRSH SPLICE DONOR SITE, STEM-LOOP, RIBONUCLEIC ACID, RNA CAENORHABDITIS ELEGANS 1NJI STRUCTURE OF CHLORAMPHENICOL BOUND TO THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 7-22-03 J.L.HANSEN,P.B.MOORE,T.A.STEITZ S, ANTIBIOTIC, CHLORAMPHENICOL, LSU, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 4C7O THE STRUCTURAL BASIS OF FTSY RECRUITMENT AND GTPASE ACTIVATION BY SRP RNA X-RAY DIFFRACTION 11-20-13 F.VOIGTS-HOFFMANN,N.SCHMITZ,K.SHEN,S.O.SHAN,S.F.ATAIDE,N.BAN NUCLEAR PROTEIN-RNA COMPLEX, NUCLEAR PROTEIN, PROTEIN TRANSLOCATION, SIGNAL RECOGNITION PARTICLE, SIGNAL RECOGNITION PARTICLE RECEPTOR, GDP ALF3/4 2.60 ESCHERICHIA COLI 3GX3 CRYSTAL STRUCTURE OF THE T. TENGCONGENSIS SAM-I RIBOSWITCH VARIANT U34C/A94G BOUND WITH SAH X-RAY DIFFRACTION 1-12-10 R.K.MONTANGE,R.T.BATEY KINK-TURN, FOUR-WAY JUNCTION, PSEUDOKNOT, RIBOSWITCH, RNA 2.70 synthetic 1LC6 SOLUTION STRUCTURE OF THE U6 INTRAMOLECULAR STEM-LOOP RNA SOLUTION NMR 5-29-02 A.HUPPLER,L.J.NIKSTAD,A.M.ALLMANN,D.A.BROW,S.E.BUTCHER RNA, STEM-LOOP, PENTALOOP synthetic 3Q51 STRUCTURAL ANALYSIS OF A CLASS I PREQ1 RIBOSWITCH APTAMER IN THE METABOLITE-FREE STATE. X-RAY DIFFRACTION 5-18-11 J.E.WEDEKIND,J.L.JENKINS,J KRUCINSKA PREQ1, PREQ0, RNA, RIBOSOMAL BINDING SITE, APTAMER, METABOLITE, PSEUDOKNOT, H-TYPE, RIBOSWITCH 2.85 synthetic 3Q0M CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH P38ALPHA NREB X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.71 synthetic 3BNP CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE (A1555G MUTANT) X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 2.70 synthetic,synthetic 2QP0 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN AND NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH SPECTINOMYCIN AND NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI 2P89 SOLUTION STRUCTURE OF THE 3' PSEUDOURIDYATION POCKET OF U65 SNORNA WITH BOUND SUBSTRATE SOLUTION NMR 4-03-07 H.WU,J.FEIGON RNA-RNA COMPLEX, THREE-WAY JUNCTIONS, DOUBLE HELIX synthetic,synthetic 1BN0 SL3 HAIRPIN FROM THE PACKAGING SIGNAL OF HIV-1, NMR, 11 STRUCTURES SOLUTION NMR 4-27-99 L.PAPPALARDO,D.J.KERWOOD,I.PELCZER,P.N.BORER HIV-1, PACKAGING, RNA, TETRALOOP, RIBONUCLEIC ACID, NMR synthetic 4HUB THE RE-REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION: MORE COMPLETE STRUCTURE OF THE L7/L12 AND L1 STALK, L5 AND LX PROTEINS X-RAY DIFFRACTION 5-29-13 A.GABDULKHAKOV S RIBOSOMAL SUBUNIT, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA BINDING, TRNA BINDING, METAL BINDING, RIBOSOME 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1WSU C-TERMINAL DOMAIN OF ELONGATION FACTOR SELB COMPLEXED WITH SECIS RNA X-RAY DIFFRACTION 1-25-05 S.YOSHIZAWA,L.RASUBALA,T.OSE,D.KOHDA,D.FOURMY,K.MAENAKA WINGED-HELIX, TRANSLATION/RNA COMPLEX 2.30 synthetic 1ZFX THE STRUCTURE OF A MINIMAL ALL-RNA HAIRPIN RIBOZYME WITH THE MUTANT G8U AT THE CLEAVAGE SITE X-RAY DIFFRACTION 2-14-06 J.E.WEDEKIND HAIRPIN RIBOZYME, ALL-RNA, COBALT HEXAAMINE, MUTATION, LOW SALT, S-TURN, E-LOOP, RIBOSE ZIPPER, CATALYTIC RNA 2.38 synthetic,synthetic,synthetic,synthetic 1MFY SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER SOLUTION NMR 9-18-02 M.-K.LEE,S.-H.BAE,C.-J.PARK,H.-K.CHEONG,C.CHEONG,B.-S.CHOI INFLUENZA A VIRUS PROMOTER,INTERNAL LOOP, SINGLE ADENINE BULGE, C4, NATURAL VARIANT synthetic 4BTD THERMUS THERMOPHILUS RIBOSOME X-RAY DIFFRACTION 8-07-13 Y.CHEN,S.FENG,V.KUMAR,Y.G.GAO RIBOSOME, TRANSLOCATION, GTPASE ACTIVATION, RIBOSOME ROTATION 2.95 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 1ZSE RNA STEMLOOP FROM BACTERIOPHAGE QBETA COMPLEXED WITH AN N87S MUTANT MS2 CAPSID X-RAY DIFFRACTION 5-09-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY CAPSID, COMPLEX (CAPSID PROTEIN - RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, RNA/VIRUS/VIRAL PROTEIN COMPLEX 3.00 ENTEROBACTERIO PHAGE MS2 1K9M CO-CRYSTAL STRUCTURE OF TYLOSIN BOUND TO THE 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 7-19-02 J.L.HANSEN,J.A.IPPOLITO,N.BAN,P.NISSEN,P.B.MOORE,T.A.STEITZ S SUBUNIT, TYLOSIN, ANTIBIOTIC, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3GS1 AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION A38N1DA X-RAY DIFFRACTION 5-12-09 R.C.SPITALE,R.VOLPINI,M.G.HELLER,J.KRUCINSKA,G.CRISTALLI, J.E.WEDEKIND RNA, RIBOZYME, HAIRPIN RIBOZYME, N1-DEAZAADENOSINE 2.85 synthetic,synthetic,synthetic,synthetic 2Y0Y THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1L1W NMR STRUCTURE OF A SRP19 BINDING DOMAIN IN HUMAN SRP RNA SOLUTION NMR 5-22-02 T.SAKAMOTO,S.MORITA,K.TABATA,K.NAKAMURA,G.KAWAI RNA HAIRPIN, TETRALOOP, GNRR, MISMATCH synthetic 3U2E EAL DOMAIN FROM CAULOBACTER CRESCENTUS IN COMPLEX WITH 5'-PGPG AND MG++ X-RAY DIFFRACTION 10-12-11 E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,C.MASSA,T.SCHIRMER, A.JOACHIMIAK,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, GGDEF, EAL, C-DIGMP, LYASE-RNA COMPLEX 2.32 synthetic 1PVO X-RAY CRYSTAL STRUCTURE OF RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH SSRNA SUBSTRATE AND ANPPNP X-RAY DIFFRACTION 7-22-03 E.SKORDALAKES,J.M.BERGER RHO-ANPPNP-SSRNA COMPLEX, TRANSCRIPTION/RNA COMPLEX 3.00 synthetic 3HJW STRUCTURE OF A FUNCTIONAL RIBONUCLEOPROTEIN PSEUDOURIDINE SYNTHASE BOUND TO A SUBSTRATE RNA X-RAY DIFFRACTION 6-23-09 B.LIANG,J.ZHOU,E.KAHEN,R.M.TERNS,M.P.TERNS,H.LI PROTEIN-RNA COMPLEX, BOX H/ACA, RIBONUCLEOPROTEIN PARTICLES, RNP, PSEUDOURIDINE SYNTHASE, PSEUDOURIDYLASE, PSEUDOURIDYLATION, RNA EDITING, POST-TRANSCRIPTIONAL MODIFICATION, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE/RNA COMPLEX 2.35 synthetic,synthetic 2HYI STRUCTURE OF THE HUMAN EXON JUNCTION COMPLEX WITH A TRAPPED DEAD-BOX HELICASE BOUND TO RNA X-RAY DIFFRACTION 8-15-06 C.B.F.ANDERSEN,H.LE HIR,G.R.ANDERSEN EXON JUNCTION, SPLICING, MRNA PROCESSING, TRANSLATION, DEAD- BOX ATPASE, NONSENSE MEDIATED DECAY, HYDROLASE/RNA BINDING PROTEIN/RNA COMPLEX 2.30 synthetic 3LWR STRUCTURE OF H/ACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 4SU X-RAY DIFFRACTION 7-14-10 J.ZHOU,B.LIANG,C.LV,W.YANG,H.LI H/ACA PSEUDOURIDINE SYNTHASE, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE-RNA BINDING PROTEIN-RNA COMPLEX 2.20 synthetic,synthetic 2Y19 THE CRYSTAL STRUCTURE OF EF-TU AND TRP-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2IRN THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2 SOLUTION NMR 2-20-07 B.S.TOLBERT RNA INERNAL LOOPS, SHEARED GA PAIRS, GU WOBBLE, THERMODYNAMICS synthetic 3B5S MINIMALLY HINGED HAIRPIN RIBOZYME INCORPORATES A38DAP MUTATION AND 2'-O-METHYL MODIFICATION AT THE ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME; RNA; 2, 6 DIAMINOPURINE; 2'-O-METHYL 2.25 synthetic,synthetic,synthetic 4ALP THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEXAURIDINE X-RAY DIFFRACTION 9-05-12 F.MAYR,A.SCHUETZ,N.DOEGE,U.HEINEMANN CHAPERONE-RNA COMPLEX, TRANSCRIPTION, LIN-28, RNA, LET-7, MIRNA 1.48 SYNTHETIC CONSTRUCT 2XTG TRNA TRANLOCATION ON THE 70S RIBOSOME: THE PRE- TRANSLOCATIONAL TRANSLOCATION INTERMEDIATE TI(PRE) ELECTRON MICROSCOPY 12-08-10 A.H.RATJE,J.LOERKE,A.MIKOLAJKA,M.BRUENNER,P.W.HILDEBRAND, A.L.STAROSTA,A.DOENHOEFER,S.R.CONNELL,P.FUCINI,T.MIELKE, P.C.WHITFORD,J.N.ONUCHIC,Y.YU,K.Y.SANBONMATSU,R.K.HARTMANN, P.A.PENCZEK,D.N.WILSON,C.M.T.SPAHN TRANSLATION, RIBOSOME, ELONGATION CYCLE, TRNA TRANSLOCATION 7.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2XKV ATOMIC MODEL OF THE SRP-FTSY EARLY CONFORMATION ELECTRON MICROSCOPY 12-15-10 L.F.ESTROZI,D.BOEHRINGER,S.-O.SHAN,N.BAN,C.SCHAFFITZEL PROTEIN TRANSPORT 13.50 ESCHERICHIA COLI 1GTS STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE X-RAY DIFFRACTION 2-07-95 T.A.STEITZ J.J.PERONA,M.A.ROULD PROTEIN-RNA COMPLEX, LIGASE/RNA COMPLEX 2.80 ESCHERICHIA COLI 1QCU CRYSTAL STRUCTURE OF AN 18 BASE PAIR COPY CONTROL RELATED RNA DUPLEX X-RAY DIFFRACTION 11-11-99 P.S.KLOSTERMAN,S.A.SHAH,T.A.STEITZ A-RNA STRUCTURE, RIBONUCLEIC ACID 1.20 synthetic,synthetic 4CE4 S LARGE SUBUNIT OF THE PORCINE MITOCHONDRIAL RIBOSOME ELECTRON MICROSCOPY 12-18-13 B.J.GREBER,D.BOEHRINGER,A.LEITNER,P.BIERI,F.VOIGTS-HOFFMANN, J.P.ERZBERGER,M.LEIBUNDGUT,R.AEBERSOLD,N.BAN RIBOSOME, MAMMALIAN MITOCHONDRIAL RIBOSOME, 39S LARGE RIBOSOMAL SUBUNIT, TRANSLATION, RIBOSOMAL PROTEINS, RRNA, POLYPEPTIDE EXIT SITE, MEMBRANE ASSOCIATION 4.90 SUS SCROFA DOMESTICA,SUS SCROFA DOMESTICA 3J5A E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN CLASSIC POST- TRANSLOCATION STATE (POST1, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1F7U CRYSTAL STRUCTURE OF THE ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNA(ARG) AND L-ARG X-RAY DIFFRACTION 6-27-01 B.DELAGOUTTE,D.MORAS,J.CAVARELLI RNA-PROTEIN COMPLEX, AMINOACYLATION, ARGINYL-TRNA SYNTHETASE, LIGASE, LIGASE/RNA COMPLEX 2.20 synthetic 4GAU ALLOSTERIC CONTROL OF THE RIBOSOME BY SMALL-MOLECULE ANTIBIOTICS X-RAY DIFFRACTION 8-29-12 J.H.D.CATE,A.PULK,S.C.BLANCHARD,L.WANG,M.B.FELDMAN,M.R.WASSERMAN, R.ALTMAN NUCLEIC ACID CONFORMATION, PROTEIN BIOSYNTHESIS, ANTIBIOTIC, NEOMYCIN, AMINOGLYCOSIDE, RRF, RECYCLING, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI 3S16 RNA POLYMERASE II INITIATION COMPLEX WITH AN 8-NT RNA X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.24 synthetic 2HOO CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO BENFOTIAMINE X-RAY DIFFRACTION 9-19-06 T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; RIBOSWITCH; BENFOTIAMINE 3.00 synthetic 3LWV STRUCTURE OF H/ACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 2'- DEOXYURIDINE X-RAY DIFFRACTION 7-14-10 J.ZHOU,B.LIANG,C.LV,W.YANG,H.LI H/ACA PSEUDOURIDINE SYNTHASE, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE-RNA BINDING PROTEIN-RNA COMPLEX 2.50 synthetic,synthetic 1GTN STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO AN RNA MOLECULE CONTAINING 11 GAGCC REPEATS X-RAY DIFFRACTION 4-05-02 N.H.HOPCROFT,A.L.WENDT,P.GOLLNICK,A.A.ANTSON RNA BINDING PROTEIN/RNA, TRANSCRIPTION ATTENUATION, RNA-BINDING PROTEIN, TRP RNA 2.50 synthetic 3KMQ G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA, TETRAGONAL STRUCTURE X-RAY DIFFRACTION 7-07-10 C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE D, POLYMERASE, RNA DEPENDENT RNA POLYMERASE, RIBAVIRIN, FOOT-AND- MOUTH DISEASE VIRUS, TRANSFERASE-RNA COMPLEX 2.11 synthetic,synthetic 3FIN T. THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, TRNAS AND EF-TU.GDP.KIRROMYCIN TERNARY COMPLEX, FITTED TO A 6.4 A CRYO-EM MAP. THIS FILE CONTAINS THE 50S SUBUNIT. ELECTRON MICROSCOPY 3-03-09 J.-C.SCHUETTE,C.M.T.SPAHN RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, METAL-BINDING, RNA- BINDING, RRNA-BINDING, ZINC, TRNA-BINDING, REPRESSOR, TRANSLATION REGULATION, METHYLATION, RIBOSOME 6.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2FQN CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING A SITE X-RAY DIFFRACTION 2-14-06 J.KONDO,A.URZHUMTSEV,E.WESTHOF RNA DUPLEX, RRNA, DECODING SITE, A SITE, HOMO SAPIENS CYTOPLASM 2.30 synthetic 4GCW CRYSTAL STRUCTURE OF RNASE Z IN COMPLEX WITH PRECURSOR TRNA(THR) X-RAY DIFFRACTION 10-31-12 O.PELLEGRINI,I.LI DE LA SIERRA-GALLAY,J.PITON,L.GILET,C.CONDON ZINC-DEPENDENT METALO BETALACTAMASE - RNA COMPLEX, TRNA MATURASE, PROTEIN-RNA COMPLEX, TRNA BINDING, HYDROLASE-RNA COMPLEX 3.00 synthetic 3J4Y E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE PRE- TRANSLOCATION STATE (PRE3, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1D4R -MER FRAGMENT OF HUMAN SRP RNA HELIX 6 X-RAY DIFFRACTION 12-02-99 K.WILD,O.WEICHENRIEDER,G.A.LEONARD,S.CUSACK A-RNA HELIX, GGAG/GAGG BULGE, AC/CA TANDEM MISMATCH, GU WOBBLE BASE PAIRS, 2'3' -CYCLIC PHOSPHATE 2.00 synthetic,synthetic 4ATO NEW INSIGHTS INTO THE MECHANISM OF BACTERIAL TYPE III TOXIN- ANTITOXIN SYSTEMS: SELECTIVE TOXIN INHIBITION BY A NON- CODING RNA PSEUDOKNOT X-RAY DIFFRACTION 12-26-12 F.L.SHORT,X.Y.PEI,T.R.BLOWER,S.L.ONG,B.F.LUISI,G.P.C.SALMOND TOXIN-ANTITOXIN COMPLEX 2.20 BACILLUS THURINGIENSIS 2FD0 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH LIVIDOMYCIN X-RAY DIFFRACTION 5-16-06 E.ENNIFAR,J.C.PAILLART,R.MARQUET,P.DUMAS HIV-1, RNA, AMINOGLYCOSIDE, ANTIBIOTICS 1.80 synthetic 2R7W CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (UGUGACC)/MRNA 5'-CAP (M7GPPPG) COMPLEX X-RAY DIFFRACTION 7-29-08 X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 2.60 SIMIAN ROTAVIRUS 283D A CURVED RNA HELIX INCORPORATING AN INTERNAL LOOP WITH G-A AND A-A NON-WATSON-CRICK BASE PAIRING X-RAY DIFFRACTION 9-30-96 K.J.BAEYENS,H.L.DE BONDT,A.PARDI,S.R.HOLBROOK UNUSUAL RNA, DOUBLE HELIX, CURVED, INTERNAL LOOP, MISMATCHED 2.30 engineered 1Y26 A-RIBOSWITCH-ADENINE COMPLEX X-RAY DIFFRACTION 12-28-04 A.SERGANOV,Y.R.YUAN,D.J.PATEL A-RIBOSWITCH ADENINE RECOGNITION, CRYSTAL STRUCTURE, RNA 2.10 VIBRIO VULNIFICUS 1AQ4 STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR X-RAY DIFFRACTION 12-24-97 L.LILJAS S.VAN DEN WORM,N.STONEHOUSE,K.VALEGARD COMPLEX (COAT PROTEIN/RNA),COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 3.00 engineered 1ZO3 THE P-SITE AND P/E-SITE TRNA STRUCTURES FITTED TO P/I SITE CODON. ELECTRON MICROSCOPY 6-14-05 G.S.ALLEN,A.ZAVIALOV,R.GURSKY,M.EHRENBERG,J.FRANK E. COLI, RIBOSOME, INITIATION OF PROTEIN SYNTHESIS, INITIATION FACTOR, CRYO-ELETRON MICROSCOPY, RNA 13.80 ESCHERICHIA COLI 2Y17 EF-TU COMPLEX 3 X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3V7E CRYSTAL STRUCTURE OF YBXF BOUND TO THE SAM-I RIBOSWITCH APTAMER X-RAY DIFFRACTION 3-07-12 N.J.BAIRD,J.ZHANG,T.HAMMA,A.R.FERRE-D'AMARE RNA-PROTEIN COMPLEX, RIBOSWITCH, K-TURN, L7AE-LIKE, A MEMBER OF THE L7AE/L30E SUPERFAMILY, UNKNOWN FUNCTION, K-TURN MOTIF, RIBOSOMAL PROTEIN-RNA COMPLEX 2.80 CALDANAEROBACTER SUBTERRANEUS SUBSP. 2XQD THE STRUCTURE OF EF-TU AND AMINOACYL-TRNA BOUND TO THE 70S RIBOSOME WITH A GTP ANALOG X-RAY DIFFRACTION 11-17-10 R.M.VOORHEES,T.M.SCHMEING,V.RAMAKRISHNAN RIBOSOME, EF-TU, TRNA, GDPCP, GTPASE 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2F4S A-SITE RNA IN COMPLEX WITH NEAMINE X-RAY DIFFRACTION 5-02-06 J.B.MURRAY,S.O.MEROUEH,R.J.RUSSELL,G.LENTZEN,J.HADDAD, S.MOBASHERY A-SITE RNA, NEAMINE 2.80 synthetic 1G70 COMPLEX OF HIV-1 RRE-IIB RNA WITH RSG-1.2 PEPTIDE SOLUTION NMR 2-07-01 Y.GOSSER,T.HERMANN,A.MAJUMDAR,W.HU,R.FREDERICK,F.JIANG,W.XU, D.J.PATEL PEPTIDE-RNA COMPLEX, NON-CANONICAL BASE PAIRS, VIRAL PROTEIN/RNA COMPLEX HUMAN IMMUNODEFICIENCY VIRUS 1 3IVN STRUCTURE OF THE U65C MUTANT A-RIBOSWITCH APTAMER FROM THE BACILLUS SUBTILIS PBUE OPERON X-RAY DIFFRACTION 1-19-10 V.DELFOSSE,P.DAGENAIS,D.CHAUSSE,G.DI TOMASSO,P.LEGAULT APTAMER, RNA, A-RIBOSWITCH 2.80 BACILLUS SUBTILIS 1ZZN CRYSTAL STRUCTURE OF A GROUP I INTRON/TWO EXON COMPLEX THAT INCLUDES ALL CATALYTIC METAL ION LIGANDS. X-RAY DIFFRACTION 8-30-05 M.R.STAHLEY,S.A.STROBEL RNA STRUCTURE, RIBOZYME, SELF-SPLICING INTRON, AZOARCUS, TWO-METAL-ION MECHANISM, STRUCTURAL PROTEIN/RNA COMPLEX 3.37 synthetic,synthetic,synthetic 3J3V ATOMIC MODEL OF THE IMMATURE 50S SUBUNIT FROM BACILLUS SUBTILIS (STATE I-A) ELECTRON MICROSCOPY 6-12-13 N.LI,Q.GUO,Y.ZHANG,Y.YUAN,C.MA,J.LEI,N.GAO RIBOSOME BIOGENESIS, RIBOSOME ASSEMBLY, RNA FOLDING, YLQF, RIBOSOME 13.30 BACILLUS SUBTILIS,BACILLUS SUBTILIS 1VP0 CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI 3J2E DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 15.30 ESCHERICHIA COLI 3ZJV TERNARY COMPLEX OF E .COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND THE BENZOXABOROLE AN3213 IN THE EDITING CONFORMATION X-RAY DIFFRACTION 4-17-13 S.CUSACK,A.PALENCIA,T.CREPIN,V.HERNANDEZ,T.AKAMA,S.J.BAKER,W.BU, L.FENG,Y.R.FREUND,L.LIU,M.MEEWAN,M.MOHAN,W.MAO,F.L.ROCK,H.SEXTON, A.SHEORAN,Y.ZHANG,Y.ZHANG,Y.ZHOU,J.A.NIEMAN,M.R.ANUGULA, E.M.KERAMANE,K.SAVARIRAJ,D.S.REDDY,R.SHARMA,R.SUBEDI,R.SINGH, A.OLEARY,N.L.SIMON,P.L.DEMARSH,S.MUSHTAQ,M.WARNER,D.M.LIVERMORE, M.R.K.ALLEY,J.J.PLATTNER LIGASE-RNA COMPLEX, LIGASE, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE, AMINOACYL TRNA SYNTHETASE, ATP BINDING, EDITING SYNTHETASE 2.31 ESCHERICHIA COLI K-12 4JRC DISTAL STEM I REGION FROM G. KAUSTOPHILUS GLYQS T BOX RNA X-RAY DIFFRACTION 4-24-13 J.C.GRIGG,A.KE T BOX RNA, REGULATORY RNA LEADER SEQUENCE, TRNA BINDING, RNA 2.67 synthetic 2J03 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE II. X-RAY DIFFRACTION 9-28-06 M.SELMER,C.M.DUNHAM,F.V.MURPHY,A.WEIXLBAUMER,S.PETRY, J.R.WEIR,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRNA, PAROMOMYCIN, MRNA, TRANSLATION 2.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3HO1 CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE N546 MUTANT PROTEIN COMPLEXED WITH DNA GUIDE STRAND AND 12-NT RNA TARGET STRAND X-RAY DIFFRACTION 10-06-09 Y.WANG,H.LI,G.SHENG,D.J.PATEL ARGONAUTE, PROTEIN-DNA-RNA COMPLEX, PLASMID, NUCLEIC ACID BINDING PROTEIN/DNA/RNA COMPLEX 2.60 synthetic 3CCL STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION U2535C. DENSITY FOR ANISOMYCIN IS VISIBLE BUT NOT INCLUDED IN MODEL. X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL U2535C MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, RIBOSOME 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1LVJ STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING SOLUTION NMR 12-11-02 Z.DU,K.E.LIND,T.L.JAMES TRANSCRIPTIONAL ACTIVATION, NMR, COMPLEX (RNA/DRUG) HUMAN IMMUNODEFICIENCY VIRUS 1 2OUE CRYSTAL STRUCTURE OF A JUNCTIONLESS ALL-RNA HAIRPIN RIBOZYME AT 2.05 ANGSTROMS RESOLUTION X-RAY DIFFRACTION 3-06-07 J.E.WEDEKIND RNA, HAIRPIN RIBOZYME, ALL-RNA, MUTATION, LOW SALT, S-TURN, E-LOOP, RIBOSE ZIPPER, CATALYTIC RNA 2.05 synthetic,synthetic,synthetic,synthetic 3J0Y STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (50S RIBOSOME OF CLASS 4B OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 13.50 ESCHERICHIA COLI,ESCHERICHIA COLI 3HGA CRYSTAL STRUCTURE OF 4-SE-URIDINE DERIVATIZED RNA X-RAY DIFFRACTION 8-18-09 JIA SHENG,SOARES ALEXEI,ZHEN HUANG -SE-U RNA 1.30 synthetic 3D5D STRUCTURAL BASIS FOR TRANSLATION TERMINATION ON THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-07-08 M.LAURBERG,H.ASAHARA,A.KOROSTELEV,J.ZHU,S.TRAKHANOV, H.F.NOLLER RIBOSOME, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METAL-BINDING, ZINC 3.21 THERMUS THERMOPHILUS HB27,THERMUS THERMOPHILUS HB27 1VQO THE STRUCTURE OF CCPMN BOUND TO THE LARGE RIBOSOMAL SUBUNIT HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.20 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 1URN U1A MUTANT/RNA COMPLEX + GLYCEROL X-RAY DIFFRACTION 3-08-96 C.OUBRIDGE,N.ITO,P.R.EVANS,C.-H.TEO,K.NAGAI PROTEIN-RNA COMPLEX, SINGLE STRAND, OVERHANGING BASE, HAIRPIN LOOP, TRANSCRIPTION/RNA COMPLEX 1.92 synthetic 3I9C INITIATION COMPLEX OF 70S RIBOSOME WITH TWO TRNAS AND MRNA. THIS ENTRY 3I9C CONTAINS 50S RIBOSOMAL SUBUNIT OF MOLECULE B. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I9B. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I9D (30S) AND 3I9E (50S) X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA, 5S RIBOSOMAL RNA, RIBOSOMAL RNA, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METHYLATION, TRNA-BINDING, METAL-BINDING, ZINC 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2L3C SOLUTION STRUCTURE OF ADAR2 DSRBM1 BOUND TO LSL RNA SOLUTION NMR 10-27-10 F.ALLAIN,R.STEFL,F.OBERSTRASS EDITING, DSRNA RECOGNITION, DSRBM, HYDROLASE-RNA COMPLEX RATTUS NORVEGICUS 2AP5 SOLUTION STRUCTURE OF THE C27A SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, AVERAGE STRUCTURE SOLUTION NMR 9-05-06 P.V.CORNISH,D.P.GIEDROC RNA PSEUDOKNOT; FRAMESHIFTING synthetic 3SLQ CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO GUANOSINE-5'-MONOPHOSPHATE X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV THREE-WAY JUNCTION, RIBOSWITCH, 2'-DEOXY GUANOSINE, RNA 2.50 synthetic 3IIN PLASTICITY OF THE KINK TURN STRUCTURAL MOTIF X-RAY DIFFRACTION 3-09-10 S.V.LIPCHOCK,S.A.STROBEL,A.H.ANTONIOLI,J.C.COCHRANE GROUP I INTRON, AZOARCUS, RIBOZYME, LIGATION, KINK TURN, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, RNA BINDING PROTEIN/DNA, RNA COMPLEX, RNA BINDING PROTEIN-DNA-RNA COMPLEX 4.18 synthetic 1P5O SOLUTION STRUCTURE OF HCV IRES DOMAIN II SOLUTION NMR 11-04-03 P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, TRNA, LOOP E MOTIF, HAIRPIN LOOP synthetic 2WDJ STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE II. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN TRNA, ZINC, MRNA, RIBOSOME, REPRESSOR, RNA-BINDING, METAL-BINDING, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSLATION REGULATION, METHYLATION, TRANSLATION, TRNA-BINDING, RRNA-BINDING 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3V2D CRYSTAL STRUCTURE OF YFIA BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 50S SUBUNIT OF THE 1ST RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME ASSOCIATED INHIBITOR A, RAIA, PROTEIN Y, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 2.70 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2QOZ CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN AND NEOMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI,ESCHERICHIA COLI 3J0L CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FITTED TO A 9.8A CRYO-EM MAP: CLASSIC PRE STATE 1 ELECTRON MICROSCOPY 11-16-11 T.BUDKEVICH,J.GIESEBRECHT,R.ALTMAN,J.MUNRO,T.MIELKE,K.NIERHAUS, S.BLANCHARD,C.M.SPAHN MAMMALIA, TRANSLATION, ELONGATION CYCLE, TRNA, RIBOSOME 9.80 ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS 4A93 RNA POLYMERASE II ELONGATION COMPLEX CONTAINING A CPD LESION X-RAY DIFFRACTION 3-21-12 C.WALMACQ,A.C.M.CHEUNG,M.L.KIREEVA,L.LUBKOWSKA,C.YE,D.GOTTE, J.N.STRATHERN,T.CARELL,P.CRAMER,M.KASHLEV TRANSCRIPTION, TRANSCRIPTION FIDELITY, TRANSCRIPTION COUPLED DNA REPAIR, DNA DAMAGE, DNA REPAIR, PYRIMIDINE DIMERS, 3.40 SACCHAROMYCES CEREVISIAE 2GRB CRYSTAL STRUCTURE OF AN RNA QUADRUPLEX CONTAINING INOSINE- TETRAD X-RAY DIFFRACTION 11-21-06 B.PAN,K.SHI,M.SUNDARALINGAM RNA QUADRUPLEX 1.40 synthetic 4G5N CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TETRACYCLINE. THIS ENTRY CONTAINS THE 50S SUBUNIT OF MOLECULE B. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2EES GUANINE RIBOSWITCH A21U, U75A MUTANT BOUND TO HYPOXANTHINE X-RAY DIFFRACTION 11-13-07 S.D.GILBERT,A.L.EDWARDS,R.T.BATEY MRNA, RIBOSWITCH, GUANINE, HYPOXANTHINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, THREE-WAY JUNCTION 1.75 synthetic 2FMT METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL- METHIONYL-TRNAFMET X-RAY DIFFRACTION 7-29-99 E.SCHMITT,Y.MECHULAM,S.BLANQUET COMPLEX (METHYLTRANSFERASE/TRNA), FORMYLTRANSFERASE, INITIATION OF TRANSLATION 2.80 synthetic 1Z31 THE STRUCTURE OF AN ENZYME-ACTIVATING FRAGMENT OF HUMAN TELOMERASE RNA SOLUTION NMR 3-22-05 T.C.LEEPER,G.VARANI ASYMMETRIC INTERNAL BULGE, RESIDUAL DIPOLAR COUPLINGS, TELOMERASE PROTEIN BINDING SITE synthetic 1VS7 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH THE ANTIBIOTIC KASUGAMYIN AT 3.5A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-26-06 B.S.SCHUWIRTH,A.VILA-SANJURJO,J.H.D.CATE RIBOSOME, KASUGAMYCIN 3.46 ESCHERICHIA COLI 1T0E CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA X-RAY DIFFRACTION 6-15-04 S.SHANDRICK,Q.ZHAO,Q.HAN,B.K.AYIDA,M.TAKAHASHI,G.C.WINTERS, K.B.SIMONSEN,D.VOURLOUMIS,T.HERMANN CRYSTAL STRUCTURE, BACTERIAL DECODING SITE RNA, 9-BETA-D- RIBOFURANOSYL-9H-PURIN-2-AMINE 1.70 synthetic,synthetic 1I96 CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN) X-RAY DIFFRACTION 4-12-01 M.PIOLETTI,F.SCHLUENZEN,J.HARMS,R.ZARIVACH,M.GLUEHMANN, H.AVILA,H.BARTELS,C.JACOBI,T.HARTSCH,A.YONATH,F.FRANCESCHI S RIBOSOME, TRANSLATION INITIATION FACTOR, IF3 4.20 THERMUS THERMOPHILUS 3V6V CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G347U. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATIONS, RAM, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, PAROMOMYCIN AS CRYSTALLIZATION AGENT, RIBOSOME 3.90 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 4BPO THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A - COMPLEX 3 X-RAY DIFFRACTION 7-17-13 M.WEISSER,F.VOIGTS-HOFFMANN,J.RABL,M.LEIBUNDGUT,N.BAN RIBOSOME, TRANSLATION, TRANSLATION INITIATION, SMALL RIBOSOMAL SUBUNIT, 40S, EIF1A, EIF1, EUKARYOTIC TRANSLATION INITIATION 3.70 TETRAHYMENA THERMOPHILA 3V2F CRYSTAL STRUCTURE OF YFIA BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 50S SUBUNIT OF THE 2ND RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME ASSOCIATED INHIBITOR A, RAIA, PROTEIN Y, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 2.70 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2L6I SOLUTION STRUCTURE OF CORONAVIRAL STEM-LOOP 2 (SL2) SOLUTION NMR 3-23-11 C.LEE,L.LI,D.P.GIEDROC RNA TETRALOOP, SEVERE ACUTE RESPIRATORY SYNDROME, MOUSE HEPATITIS VIRUS, CORONAVIRUS, RNA synthetic 3NVK STRUCTURAL BASIS FOR SUBSTRATE PLACEMENT BY AN ARCHAEAL BOX C/D RIBONUCLEOPROTEIN PARTICLE X-RAY DIFFRACTION 7-20-11 S.XUE,R.WANG,H.LI NOP DOMAIN KINK TURN METHYL TRANSFERASE, RIBOSOME BIOGENESIS SPLICEOSOME BIOGENESIS, TRANSFERASE-RNA COMPLEX 3.21 synthetic,synthetic 1MV2 THE TANDEM, FACE-TO-FACE AP PAIRS IN 5'(RGGCAPGCCU)2 SOLUTION NMR 12-18-02 B.M.ZNOSKO,M.E.BURKARD,T.R.KRUGH,D.H.TURNER RIBONUCLEIC ACID, DUPLEX, TANDEM MISMATCH, PURINE, RNA synthetic 2ZH3 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDCA X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.50 ARCHAEOGLOBUS FULGIDUS 2Z4K CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH PAROMOMYCIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH PAROMOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.45 ESCHERICHIA COLI 2KG1 STRUCTURE OF THE THIRD QRRM DOMAIN OF HNRNP F IN COMPLEX WITH A AGGGAU G-TRACT RNA SOLUTION NMR 6-09-10 F.H.T.ALLAIN,C.DOMINGUEZ PROTEIN-RNA COMPLEX, G TRACT, SPLICING REGULATION, POLYADENYLATION REGULATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, RNA BINDING PROTEIN-RNA COMPLEX synthetic 1RAU SOLUTION STRUCTURE OF AN UNUSUALLY STABLE RNA TETRAPLEX CONTAINING G-AND U-QUARTET STRUCTURES SOLUTION NMR 1-31-94 C.CHEONG,P.B.MOORE RNA, NMR, TETRAPLEX synthetic 1G1X STRUCTURE OF RIBOSOMAL PROTEINS S15, S6, S18, AND 16S RIBOSOMAL RNA X-RAY DIFFRACTION 10-30-00 S.C.AGALAROV,G.S.PRASAD,P.M.FUNKE,C.D.STOUT,J.R.WILLIAMSON RIBOSOMAL PROTEINS S15, S6, S18, S30 RIBOSOMAL SUBUNIT, RNA, RIBOSOME 2.60 synthetic,synthetic 1Q96 CRYSTAL STRUCTURE OF A MUTANT OF THE SARCIN/RICIN DOMAIN FROM RAT 28S RRNA X-RAY DIFFRACTION 11-25-03 C.C.CORRELL,J.BENEKEN,M.J.PLANTINGA,M.LUBBERS,Y.L.CHAN SARCIN/RICIN DOMAIN, RIBONUCLEIC ACID, RNA RECOGNITION, RIBOSOMES, ELONGATION FACTORS, MUTANT, STEM LOOP 1.75 synthetic 2YHQ STRUCTURE OF RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN, P1 CRYSTAL FORM X-RAY DIFFRACTION 1-25-12 K.EL OMARI,B.DHALIWAL,J.REN,N.G.A.ABRESCIA,M.LOCKYER,K.L.POWELL, A.R.HAWKINS,D.K.STAMMERS VIRAL PROTEIN-RNA COMPLEX 3.60 ESCHERICHIA COLI 2JYM SOLUTION STRUCTURE OF STEM-LOOP ALPHA OF THE HEPATITIS B VIRUS POST-TRANSCRIPTIONAL REGULATORY ELEMENT SOLUTION NMR 4-29-08 O.OHLENSCHLAGER,M.GORLACH,M.SCHWALBE HEPATITIS B VIRUS, POST-TRANSCRIPTIONAL REGULATORY ELEMENT, STEM-LOOP ALPHA, NMR SOLUTION STRUCTURE, RNA synthetic 1X8W STRUCTURE OF THE TETRAHYMENA RIBOZYME: BASE TRIPLE SANDWICH AND METAL ION AT THE ACTIVE SITE X-RAY DIFFRACTION 11-09-04 F.GUO,A.R.GOODING,T.R.CECH CATALYTIC RNA, RIBOZYME, GROUP I INTRON, CRYSTAL STRUCTURE, GUANOSINE BINDING SITE, METAL IONS, ACTIVE SITE, CATALYTIC MECHANISM, BASE TRIPLES, CONFORMATIONAL CHANGES 3.80 synthetic 2ZH1 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDA X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.80 ARCHAEOGLOBUS FULGIDUS 1JUR SOLUTION STRUCTURE OF HELIX III IN XENOPUS OOCYTE 5S RRNA. SOLUTION NMR 1-16-02 P.W.HUBER,J.P.RIFE,P.B.MOORE RNA, 5 S RRNA, BULGE synthetic 1Y1Y RNA POLYMERASE II-TFIIS-DNA/RNA COMPLEX X-RAY DIFFRACTION 12-28-04 P.CRAMER,H.KETTENBERGER,K.-J.ARMACHE RNA POLYMERASE II, TFIIS, NUCLEIC ACIDS, TRANSCRIPTION, READTHROUGH, TRANSFERASE/TRANSCRIPTION/DNA-RNA HYBRID COMPLEX 4.00 synthetic 2VPL THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII X-RAY DIFFRACTION 9-23-08 V.KLJASHTORNY,S.TISHCHENKO,N.NEVSKAYA,S.NIKONOV,M.GARBER RIBOSOMAL PROTEIN, RNA/PROTEIN COMPLEX, TRANSLATION REGULATION, TRANSLATION, REPRESSOR, RNA-BINDING, TRNA-BINDING, RRNA-BINDING 2.30 METHANOCALDOCOCCUS JANNASCHII 3S8U CRYSTAL STRUCTURE OF A 2-AZIDO-ADENINE-MODIFIED RNA X-RAY DIFFRACTION 4-11-12 E.ENNIFAR,R.MICURA HAIRPIN RNA, RNA LABELLING,2'-AZIDO-ADENINE, RNA 1.20 ESCHERICHIA COLI 1K6G SOLUTION STRUCTURE OF CONSERVED AGNN TETRALOOPS: INSIGHTS INTO RNT1P RNA PROCESSING SOLUTION NMR 12-19-01 I.LEBARS,B.LAMONTAGNE,S.YOSHIZAWA,S.ABOU ELELA,D.FOURMY RNA TETRALOOP synthetic 3UXQ THE STRUCTURE OF THERMORUBIN IN COMPLEX WITH THE 70S RIBOSOME FROM THERMUS THERMOPHILUS. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 1-25-12 D.BULKLEY,F.A.JOHNSON,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, THERMORUBIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.20 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4DR6 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS (HB8) 30S RIBOSOMAL SUBUNIT WITH CODON, NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE FIRST CODON POSITION AND STREPTOMYCIN BOUND X-RAY DIFFRACTION 11-14-12 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4FRG CRYSTAL STRUCTURE OF THE COBALAMIN RIBOSWITCH APTAMER DOMAIN X-RAY DIFFRACTION 10-17-12 F.E.REYES,J.E.JOHNSON,J.T.POLASKI,R.T.BATEY COBALAMIN, RIBOSWITCH, B12, RNA 2.95 MARINE METAGENOME 1Q86 CRYSTAL STRUCTURE OF CCA-PHE-CAP-BIOTIN BOUND SIMULTANEOUSLY AT HALF OCCUPANCY TO BOTH THE A-SITE AND P- SITE OF THE THE 50S RIBOSOMAL SUBUNIT. X-RAY DIFFRACTION 10-07-03 J.L.HANSEN,M.T.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME 50S, A-SITE, P-SITE, PROTEIN-PROTEIN COMPLEX, RNA- RNA COMPLEX, PROTEIN-RNA COMPLEX 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 3FIK TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME. THIS ENTRY CONSISTS OF THE 50S SUBUNIT. ELECTRON MICROSCOPY 2-24-09 E.VILLA,J.SENGUPTA,L.G.TRABUCO,J.LEBARRON,W.T.BAXTER, T.R.SHAIKH,R.A.GRASSUCCI,P.NISSEN,M.EHRENBERG,K.SCHULTEN, J.FRANK RIBOSOME, DECODING, TRNA, 70S, 50S, 30S, EF-TU, TERNARY COMPLEX, ACETYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN 6.70 ESCHERICHIA COLI,ESCHERICHIA COLI 2D18 SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER SOLUTION NMR 11-01-05 S.BABA,K.TAKAHASHI,S.NOGUCHI,H.TAKAKU,Y.KOYANAGI,N.YAMAMOTO, G.KAWAI DIS, HIV-1, RNA, STRUCTURE, NMR synthetic 3MXH NATIVE STRUCTURE OF A C-DI-GMP RIBOSWITCH FROM V. CHOLERAE X-RAY DIFFRACTION 8-25-10 S.A.STROBEL,K.D.SMITH RNA, RIBOSWITCH, C-DI-GMP, RNA BINDING PROTEIN-RNA COMPLEX 2.30 synthetic 2QAM CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.21 ESCHERICHIA COLI,ESCHERICHIA COLI 2KWG SOLUTION STRUCTURE OF A FULLY MODIFIED 2'-F/2'-OME SIRNA CONSTRUCT SOLUTION NMR 7-21-10 P.PODBEVSEK,B.BHAT,J.PLAVEC SIRNA, 2'-FLUORO, 2'-O-METHYL, RNA synthetic,synthetic 1UVN THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 CA2+ INHIBITION COMPLEX X-RAY DIFFRACTION 2-26-04 P.S.SALGADO,E.V.MAKEYEV,S.BUTCHER,D.BAMFORD,D.I.STUART, J.M.GRIMES POLYMERASE, RNA-DEPENDENT RNA POLYMERASE CA INHIBITION COMPLEX WITH 6NT RNA OLIGONUCLEOTIDE, GTP, MN, TRANSCRIPTION, 3.0 synthetic 4GV9 LASSA NUCLEOPROTEIN C-TERMINAL DOMAIN IN COMPLEX WITH TRIPHOSPHATED DSRNA SOAKING FOR 5 MIN X-RAY DIFFRACTION 5-01-13 X.JIANG,Q.HUANG,W.WANG,H.DONG,H.LY,Y.LIANG,C.DONG DEDDH FAMILY ENZYME, 3'-5' EXONUCLEASE, DSRNA, RNA BINDING PROTEIN- RNA COMPLEX 2.46 synthetic,synthetic 3JYV STRUCTURE OF THE 40S RRNA AND PROTEINS AND P/E TRNA FOR EUKARYOTIC RIBOSOME BASED ON CRYO-EM MAP OF THERMOMYCES LANUGINOSUS RIBOSOME AT 8.9A RESOLUTION ELECTRON MICROSCOPY 12-22-09 D.J.TAYLOR,B.DEVKOTA,A.D.HUANG,M.TOPF,E.NARAYANAN,A.SALI,S.C.HARVEY, J.FRANK EUKARYOTIC RIBOSOME, 80S, RACK1 PROTEIN, FLEXIBLE FITTING, RIBOSOME 8.90 THERMOMYCES LANUGINOSUS,THERMOMYCES LANUGINOSUS 1JZZ STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA X-RAY DIFFRACTION 10-26-01 F.SCHLUENZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ, R.ALBRECHT,A.YONATH,F.FRANCESCHI RIBOSOME, 50S, 23S, 5S, ANTIBIOTICS, ROXITHROMYCIN, PEPTIDYL TRANSFERASE CENTER 3.80 DEINOCOCCUS RADIODURANS 4F1N CRYSTAL STRUCTURE OF KLUYVEROMYCES POLYSPORUS ARGONAUTE WITH A GUIDE RNA X-RAY DIFFRACTION 6-13-12 K.NAKANISHI,D.E.WEINBERG,D.P.BARTEL,D.J.PATEL ARGONAUTE, RNAI, RNASE H, RNA BINDING PROTEIN-RNA COMPLEX 3.19 VANDERWALTOZYMA POLYSPORA 1SZY SOLUTION STRUCTURE OF ITALY1 ("INITIATOR TRNA ANTICODON LOOP FROM YEAST"), AN UNMODIFIED 21-NT RNA WITH THE SEQUENCE OF THE ANTICODON STEM-LOOP OF YEAST INITIATOR TRNA SOLUTION NMR 4-20-04 D.C.SCHWEISGUTH,P.B.MOORE INITIATOR TRNA ANTICODON LOOP synthetic 1CGM STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES FIBER DIFFRACTION 4-30-94 H.WANG,G.STUBBS VIRUS, HELICAL VIRUS 3.40 synthetic 3OH5 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH CHLORAMPHENICOL. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, CHLORAMPHENICOL, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1ZX7 MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE X-RAY DIFFRACTION 9-20-05 Q.ZHAO,F.ZHAO,K.F.BLOUNT,Q.HAN,Y.TOR,T.HERMANN RIBOSOME, RNA, A-SITE. DOUBLE HELIX 2.15 synthetic,synthetic 1R2X COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME ELECTRON MICROSCOPY 11-04-03 M.VALLE,A.ZAVIALOV,W.LI,S.M.STAGG,J.SENGUPTA,R.C.NIELSEN, P.NISSEN,S.C.HARVEY,M.EHRENBERG,J.FRANK RNA, RIBOSOMAL PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX 9.00 synthetic 4C40 THE MOLECULAR RECOGNITION OF KINK TURN STRUCTURE BY THE L7AE CLASS OF PROTEINS X-RAY DIFFRACTION 11-06-13 L.HUANG,D.M.J.LILLEY RNA, DNA, KINK TURN 2.20 HALOARCULA MARISMORTUI 3ADB CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 1) X-RAY DIFFRACTION 7-28-10 Y.ITOH,S.CHIBA,S.SEKINE,S.YOKOYAMA PROTEIN-RNA COMPLEX, TRNA, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, TRANSFERASE, TRANSFERASE-RNA COMPLEX 2.80 METHANOPYRUS KANDLERI 1YZD CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING A SITE SPECIFIC 2'-AMINE SUBSTITUTION AT A C-G WATSON-CRICK BASE PAIR X-RAY DIFFRACTION 10-18-05 C.M.GHERGHE,J.M.KRAHN,K.M.WEEKS '-AMINE, RNA, DUPLEX 2.35 synthetic 2FCY HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEOMYCIN X-RAY DIFFRACTION 5-16-06 E.ENNIFAR,J.C.PAILLART,R.MARQUET,P.DUMAS HIV-1, RNA, AMINOGLYCOSIDE, ANTIBIOTICS 2.20 synthetic 4LCK CO-CRYSTAL STRUCTURE OF A T-BOX RIBOSWITCH STEM I DOMAIN IN COMPLEX WITH ITS COGNATE TRNA X-RAY DIFFRACTION 7-31-13 J.ZHANG,A.R.FERRE-D'AMARE RIBOSWITCH MRNA, TRNA-MRNA COMPLEX, GENE EXPRESSION REGULATION, BACTERIA, RIBOSOMAL PROTEIN-RNA COMPLEX 3.20 synthetic,synthetic 3O8R VISUALIZING ATP-DEPENDENT RNA TRANSLOCATION BY THE NS3 HELICASE FROM HCV X-RAY DIFFRACTION 1-05-11 T.C.APPLEBY,J.R.SOMOZA HELICASE, NTPASE, HCV, RNA, TRANSLOCATION, ADP, BERYLLIUM TRIFLUORIDE, PROTEASE/NTPASE/HELICASE, HYDROLASE-RNA COMPLEX 2.30 synthetic 3IZU STRUCTURAL INSIGHTS INTO COGNATE VS. NEAR-COGNATE DISCRIMINATION DURING DECODING. THIS ENTRY CONTAINS THE LARGE SUBUNIT OF A RIBOSOME PROGRAMMED WITH A COGNATE CODON ELECTRON MICROSCOPY 3-23-11 X.AGIRREZABALA,E.SCHREINER,L.G.TRABUCO,J.LEI,R.F.ORTIZ-MEOZ, K.SCHULTEN,R.GREEN,J.FRANK TRANSLATION, RIBOSOME, TERNARY COMPLEX, TRNA INCORPORATION, CRYOEM, NEAR-COGNATE 10 ESCHERICHIA COLI,ESCHERICHIA COLI 1ZN0 COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT BOUND WITH BOTH EF-G (GDPNP) AND RRF ELECTRON MICROSCOPY 6-14-05 N.GAO,A.V.ZAVIALOV,W.LI,J.SENGUPTA,M.VALLE,R.P.GURSKY, M.EHRENBERG,J.FRANK RIBOSOME RECYCLING FACTOR, ELONGATION FACTOR G, 50S SUBUNIT, TRANSLATION/BIOSYNTHETIC PROTEIN/RNA COMPLEX 15.50 ESCHERICHIA COLI 3F2Q CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG FMN RIBOSWITCH, TRANSCRIPTION, RNA 2.95 synthetic 3VRS CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, SOAKED IN MN2+ X-RAY DIFFRACTION 5-09-12 A.R.REN,K.R.RAJASHANKAR,D.J.PATEL PSEUDOKNOT, RNA 2.60 THERMOTOGA PETROPHILA 4FY7 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 3Q3Z STRUCTURE OF A C-DI-GMP-II RIBOSWITCH FROM C. ACETOBUTYLICUM BOUND TO C-DI-GMP X-RAY DIFFRACTION 5-11-11 K.D.SMITH,C.A.SHANAHAN,E.L.MOORE,A.C.SIMON,S.A.STROBEL RIBOSWITCH, C-DI-GMP, RNA 2.51 CLOSTRIDIUM ACETOBUTYLICUM 2O5I CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE ELONGATION COMPLEX X-RAY DIFFRACTION 7-03-07 D.G.VASSYLYEV,T.H.TAHIROV,M.N.VASSYLYEVA RNA POLYMERASE, ELONGATION COMPLEX, TEMPLATE DNA, NON- TEMPLATE DNA, RNA TRANSCRIPT, TRANSFERASE/DNA-RNA HYBRID COMPLEX 2.50 synthetic 2E2I RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'- DGTP X-RAY DIFFRACTION 12-19-06 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.41 synthetic 3J58 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE- TRANSLOCATION STATE (PRE5B, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3F4H CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO ROSEOFLAVIN X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG ROSEOFLAVIN, FMN, RIBOSWITCH, TRANSCRIPTION, RNA 3.00 synthetic,synthetic 2JLV DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND AMPPNP X-RAY DIFFRACTION 11-25-08 D.H.LUO,T.XU,R.P.WATSON,D.S.BECKER,A.SAMPATH,W.JAHNKE, S.S.YEONG,C.H.WANG,S.P.LIM,S.G.VASUDEVAN,J.LESCAR RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, HELICASE, PROTEASE, HYDROLASE, ATP ANALOG, TRANSFERASE, VIRAL NUCLEOPROTEIN, ENDOPLASMIC RETICULUM, CLEAVAGE ON PAIR OF BASIC RESIDUES, SSRNA, VIRION, ATPASE, NUCLEUS, MEMBRANE, SECRETED, MULTIFUNCTIONAL ENZYME, TRANSCRIPTION REGULATION, NUCLEOTIDYLTRANSFERASE, NS3 HELICASE STRUCTURE, ATP-BINDING, RNA-BINDING, FLAVIVIRUSES, GLYCOPROTEIN, RNA-DIRECTED RNA POLYMERASE, HYDROLASE/RNA, RNA REPLICATION, SERINE PROTEASE, ENVELOPE PROTEIN, DENGUE VIRUS, METAL-BINDING, TRANSMEMBRANE, TRANSCRIPTION, PHOSPHOPROTEIN, CAPSID PROTEIN 2.3 synthetic 4FY5 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 3SGF CRYSTAL STRUCTURE OF RELEASE FACTOR RF3 TRAPPED IN THE GTP STATE ON A ROTATED CONFORMATION OF THE RIBOSOME X-RAY DIFFRACTION 1-11-12 J.ZHOU,L.LANCASTER,S.TRAKHANOV,H.F.NOLLER TYPEII RELEASE FACTOR BINDING WITH RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX 3.20 ESCHERICHIA COLI,ESCHERICHIA COLI 3OXB CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH WITH SINGLE MUTATION X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 2.95 synthetic,synthetic 354D STRUCTURE OF LOOP E FROM E. COLI 5S RRNA X-RAY DIFFRACTION 11-26-97 C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ U-RNA, DOUBLE HELIX, INTERNAL LOOP, OVERHANGING BASE, MISMATCHED 1.50 ESCHERICHIA COLI,ESCHERICHIA COLI 2M22 SOLUTION STRUCTURE OF THE HELIX II TEMPLATE BOUNDARY ELEMENT FROM TETRAHYMENA TELOMERASE RNA SOLUTION NMR 3-20-13 D.D.CASH,R.J.RICHARDS,C.A.THEIMER,D.L.FINGER,J.FEIGON HOLOENZYME, PROTOZOAN PROTEINS, RNA, CILIATE, TELOMERASE, REVERSE TRANSCRIPTASE synthetic 3AMT CRYSTAL STRUCTURE OF THE TIAS-TRNA(ILE2)-ATP COMPLEX X-RAY DIFFRACTION 10-19-11 T.NUMATA,T.OSAWA TIAS, TRNA(ILE2), MODIFICATION, RNA BINDING PROTEIN-RNA COMPLEX 2.90 ARCHAEOGLOBUS FULGIDUS 1NXR HIV-1 POLYPURINE HYBRID, R(GAGGACUG):D(CAGTCCTC), NMR, 18 STRUCTURES SOLUTION NMR 7-07-97 O.Y.FEDOROFF,Y.GE,B.R.REID HIV-1 POLYPURINE HYBRID, RNA/DNA HYBRID, RNASE H, REVERSE TRANSCRIPTASE, DNA/RNA COMPLEX, DNA-RNA HYBRID synthetic 3F1G CRYSTAL STRUCTURE OF A TRANSLATION TERMINATION COMPLEX FORMED WITH RELEASE FACTOR RF2. THIS FILE CONTAINS THE 30S SUBUNIT, RF2, TWO TRNA, AND MRNA MOLECULES OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 12-23-08 A.KOROSTELEV,H.ASAHARA,L.LANCASTER,M.LAUBERG,A.HIRSCHI, H.F.NOLLER RF2, RIBOSOME, TERMINATION, TRNA 3.00 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 2QKB HUMAN RNASE H CATALYTIC DOMAIN MUTANT D210N IN COMPLEX WITH 20-MER RNA/DNA HYBRID X-RAY DIFFRACTION 11-13-07 M.NOWOTNY,S.A.GAIDAMAKOV,R.GHIRLANDO,S.M.CERRITELLI, R.J.CROUCH,W.YANG RNASE H; RNA/DNA HYBRID, HYDROLASE/DNA/RNA COMPLEX 2.40 HOMO SAPIENS 2I7Z GAAA TETRALOOP RECEPTOR COMPLEX WITH ASSOCIATED MANGANESE IONS. SOLUTION NMR 4-03-07 J.H.DAVIS,S.E.BUTCHER GAAA TETRALOOP, 11-NUCLEOTIDE RECEPTOR, RNA TERTIARY STRUCTURE, RIBONUCLEIC ACID synthetic 1KPZ PEMV-1 P1-P2 FRAMESHIFTING PSEUDOKNOT REGULARIZED AVERAGE STRUCTURE SOLUTION NMR 1-11-02 P.L.NIXON,D.P.GIEDROC PSEUDOKNOT, NMR, FRAMESHIFTING, LUTEOVIRUS, TRIPLE HELIX, PROTONATED CYTIDINE, RIBONUCLEIC ACID, RNA synthetic 3K5Q CRYSTAL STRUCTURE OF FBF-2/FBE COMPLEX X-RAY DIFFRACTION 11-03-09 Y.WANG,L.OPPERMAN,M.WICKENS,T.M.T.HALL FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE FLIPPING, BASE STACKING 2.20 synthetic 4J50 CRYSTAL STRUCTURE OF AN EXPANDED RNA CAG REPEAT X-RAY DIFFRACTION 2-20-13 H.PARK,M.D.DISNEY A FORM RNA, CAG REPEAT EXPANSION, POLYQ, GAIN OF RNA FUNCTION, HUNTINGTIN DISEASE, SPINAL-BULBAR MUSCULAR ATROPHY, DENTATORUBRAL- PALLIDOLUYSIAN ATROPHY, SPINOCEREBELLAR ATAXIA, RNA 1.65 SYNTHETIC CONSTRUCT 3V25 CRYSTAL STRUCTURE OF RMF BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 50S SUBUNIT OF THE 2ND RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME MODULATION FACTOR, STRESS RESPONSE, SMALL SUBUNIT HEAD MOVEMENT, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1YLG NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEMENTARY FACTOR SOLUTION NMR 2-01-05 C.MARIS,J.MASSE,F.H.ALLAIN,A.CHESTER,N.NAVARATNAM RNA EDITING, APOB MRNA, APOBEC1, ACF, NMR STRUCTURE synthetic 4A1E T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 5S RRNA, 5.8S RRNA AND PROTEINS OF MOLECULE 1 X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA,TETRAHYMENA THERMOPHILA 1N38 REOVIRUS POLYMERASE LAMBDA3 ELONGATION COMPLEX WITH ONE PHOSPHODIESTER BOND FORMED X-RAY DIFFRACTION 12-25-02 Y.TAO,D.L.FARSETTA,M.L.NIBERT,S.C.HARRISON RNA POLYMERASE, RIGHT HAND CONFIGURATION, BRACELET, TRANSFERASE/RNA COMPLEX 2.80 synthetic,synthetic 1NUV THE LEADZYME RIBOZYME BOUND TO MG(H2O)6(II) AND SR(II) AT 1.8 A RESOLUTION X-RAY DIFFRACTION 8-19-03 J.E.WEDEKIND,D.B.MCKAY RIBOZYME, LEADZYME, LEAD-DEPENDENT CLEAVAGE, RNA, MG(H2O) 6(II), BULGED NUCLEOTIDES, HYDRATED MAGNESIUM, SR(II), PSEUDOHELICAL PACKING, STICKY ENDS, ALTERNATE CONFORMATION, HOMOPURINE BASE PAIRS 1.81 synthetic,synthetic 2JRQ NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA- VAL3 WITH 1 MODIFICATION (CMO5U34) SOLUTION NMR 7-24-07 F.A.P.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM,B.SPROAT, A.MALKIEWICZ,P.F.AGRIS E.COLI, VALINE, TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, URIDINE 5-OXYACETIC ACID, CMO5U synthetic 4KIZ CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, ELONGATION FACTOR G 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 2YKG STRUCTURAL INSIGHTS INTO RNA RECOGNITION BY RIG-I X-RAY DIFFRACTION 10-26-11 D.LUO,A.M.PYLE HYDROLASE, INNATE IMMUNITY 2.50 HOMO SAPIENS 2LBK GLYCYL-TRNA(UCC)1B ANTICODON STEM-LOOP FROM STAPHYLOCOCCUS EPIDERMIDIS SOLUTION NMR 4-04-12 A.T.CHANG,E.P.NIKONOWICZ ANTICODON STEM-LOOP, RNA synthetic 1QA6 CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX X-RAY DIFFRACTION 5-25-99 G.L.CONN,D.E.DRAPER,E.E.LATTMAN,A.G.GITTIS RIBOSOMAL RNA, TERTIARY STRUCTUR,E RNA-PROTEIN INTERACTION, MINOR GROOVE BINDING, ANTIBIOTIC BINDING, RIBOSOME 2.80 synthetic 1JTW STRUCTURE OF SL4 RNA FROM THE HIV-1 PACKAGING SIGNAL SOLUTION NMR 12-12-01 D.J.KERWOOD,M.J.CAVALUZZI,P.N.BORER HAIRPIN, TANDEM G-U PAIRS, GAGA TETRALOOPS, RNA synthetic 1NTT '(DCPCPUPCPCPUPUP)3':(RAGGAGGAAA)5', WHERE P=PROPYNYL SOLUTION NMR 6-10-03 B.M.ZNOSKO,T.W.BARNES III,T.R.KRUGH,D.H.TURNER DNA, RNA, HYBRID, PROPYNYL, RNA/DNA COMPLEX synthetic 4ILL RECOGNITION AND CLEAVAGE OF A NON-STRUCTURED CRISPR RNA BY ITS PROCESSING ENDORIBONUCLEASE CAS6 X-RAY DIFFRACTION 3-20-13 Y.SHAO,H.LI CAS6, RNA CLEAVAGE, RNA, 2'-DEOXY MODIFICATION, U16, HYDROLASE-RNA COMPLEX 2.48 engineered 3V28 CRYSTAL STRUCTURE OF HPF BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 30S SUBUNIT WITH BOUND HPF OF THE 2ND RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME HIBERNATION FACTOR, YHBH, PROTEIN E, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.10 THERMUS THERMOPHILUS 2V47 STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE 1. X-RAY DIFFRACTION 7-31-07 A.WEIXLBAUMER,S.PETRY,C.M.DUNHAM,M.SELMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOME, RRF, RECYCLING, TRNA, MRNA, TRANSLATION 3.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1ZCI HIV-1 DIS RNA SUBTYPE F- MONOCLINIC FORM X-RAY DIFFRACTION 1-31-06 E.ENNIFAR,P.DUMAS HIV-1, RNA, LOOP-LOOP COMPLEX, METAL IONS 1.65 synthetic 3I1T CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, ACETYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN 3.81 ESCHERICHIA COLI,ESCHERICHIA COLI 2X7N MECHANISM OF EIF6S ANTI-ASSOCIATION ACTIVITY ELECTRON MICROSCOPY 3-31-10 M.GARTMANN,M.BLAU,J.-P.ARMACHE,T.MIELKE,M.TOPF,R.BECKMANN RIBOSOMAL PROTEIN-RNA COMPLEX, INITIATION FACTOR, PROTEIN BIOSYNTHESIS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN 11.80 SACCHAROMYCES CEREVISIAE 1QC0 CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX X-RAY DIFFRACTION 11-11-99 P.S.KLOSTERMAN,S.A.SHAH,T.A.STEITZ A-RNA STRUCTURE, RIBONUCLEIC ACID 1.55 synthetic,synthetic,synthetic,synthetic 2QEK HIV-1 SUBTYPE F DIS RNA EXTENDED DUPLEX FORM X-RAY DIFFRACTION 5-06-08 S.FREISZ,E.ENNIFAR,P.DUMAS HIV RNA BULGED-ADENINE 1.80 synthetic 2QBG CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH RRF BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI 1WTT HELIX 45 (16S RRNA) FROM B. STEAROTHERMOPHILUS, NMR, 11 STRUCTURES SOLUTION NMR 1-27-99 J.P.RIFE,P.B.MOORE RIBONUCLEIC ACID, RIBOSOME, RNA, 16S, MODIFIED NUCLEOTIDES, TETRALOOP synthetic 4E78 CRYSTAL STRUCTURE OF A PRODUCT STATE ASSEMBLY OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH BETA HAIRPIN LOOP DELETION BOUND TO PRIMER- TEMPLATE RNA WITH 3'-DG X-RAY DIFFRACTION 4-18-12 T.E.EDWARDS,R.T.MOSLEY RDRP, LOOPLESS DELTA8, TERNARY COMPLEX, PRODUCT COMPLEX, FLAVIVIRIDAE, HEPATITIS C VIRUS, VIRAL PROTEIN, TRANSFERASE-RNA COMPLEX 2.90 synthetic 3LRR CRYSTAL STRUCTURE OF HUMAN RIG-I CTD BOUND TO A 12 BP AU RICH 5' PPP DSRNA X-RAY DIFFRACTION 6-02-10 P.LI INNATE IMMUNITY, VIRAL RNA, RIG-I LIKE RECEPTORS, ANTIVIRAL DEFENSE, ATP-BINDING, HELICASE, HYDROLASE, IMMUNE RESPONSE, METAL-BINDING, NUCLEOTIDE-BINDING, RNA-BINDING, HYDROLASE-RNA COMPLEX 2.15 synthetic 2L2J SOLUTION NMR STRUCTURE OF THE LOWER PART OF THE R/G STEM LOOP RNA SOLUTION NMR 10-27-10 F.F.OBERSTRASS,F.H.-T.ALLAIN,R.STEFL RNA, STEM-LOOP, RNA-EDITING, AC MISMATCH HOMO SAPIENS 3IZT STRUCTURAL INSIGHTS INTO COGNATE VS. NEAR-COGNATE DISCRIMINATION DURING DECODING. THIS ENTRY CONTAINS THE LARGE SUBUNIT OF A RIBOSOME PROGRAMMED WITH A NEAR-COGNATE CODON. ELECTRON MICROSCOPY 3-23-11 X.AGIRREZABALA,E.SCHREINER,L.G.TRABUCO,J.LEI,R.F.ORTIZ-MEOZ, K.SCHULTEN,R.GREEN,J.FRANK TRANSLATION, RIBOSOME, TERNARY COMPLEX, TRNA INCORPORATION, CRYOEM, NEAR-COGNATE, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA- BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, PHOSPHOPROTEIN, METAL-BINDING 10 ESCHERICHIA COLI,ESCHERICHIA COLI 3TVF CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 N.DEMESHKINA,L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.10 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 387D RNA PSEUDOKNOT WITH 3D DOMAIN SWAPPING X-RAY DIFFRACTION 8-26-03 S.E.LIETZKE,C.E.KUNDROT,C.L.BARNES RNA PSEUDOKNOT 3.10 synthetic 1ZC5 STRUCTURE OF THE RNA SIGNAL ESSENTIAL FOR TRANSLATIONAL FRAMESHIFTING IN HIV-1 SOLUTION NMR 6-07-05 C.GAUDIN,M.H.MAZAURIC,M.TRAIKIA,E.GUITTET,S.YOSHIZAWA, D.FOURMY RNA BULGED HELIX synthetic 1XHP SOLUTION STRUCTURE OF THE EXTENDED U6 ISL AS OBSERVED IN THE U2/U6 COMPLEX FROM SACCHAROMYCES CEREVISIAE SOLUTION NMR 11-23-04 D.G.SASHITAL,G.CORNILESCU,S.E.BUTCHER U6 RNA, RNA STEM-LOOP, PENTA-LOOP, INTERNAL BULGE, METAL BINDING SITE synthetic 3KIR STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (PRECLEAVAGE STATE; PART 2 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,K.R.ANDERSEN,C.M.DUNHAM,A.C.KELLEY, J.HENTSCHEL,K.GERDES,V.RAMAKRISHNAN,D.E.BRODERSEN RIBOSOME, RELE, NUCLEASE, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC 3.30 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3VYX STRUCTURAL INSIGHTS INTO RISC ASSEMBLY FACILITATED BY DSRNA BINDING DOMAINS OF HUMAN RNA HELICASE (DHX9) X-RAY DIFFRACTION 2-13-13 Y.A.YUAN,Q.FU PROTEIN-DSRNA COMPLEX, DSRBD FOLD, DSRNA BINDING, PROTEIN-PROTEIN INTERACTION, HYDROLASE-RNA COMPLEX 2.29 synthetic 3M7N ARCHAEOGLOBUS FULGIDUS EXOSOME WITH RNA BOUND TO THE ACTIVE SITE X-RAY DIFFRACTION 4-28-10 S.HARTUNG,K.-P.HOPFNER EXOSOME, RNA, EXONUCLEASE, HYDROLASE, NUCLEASE, HYDROLASE-RNA COMPLEX 2.40 synthetic 4KZ2 CRYSTAL STRUCTURE OF PHI29 PRNA 3WJ CORE X-RAY DIFFRACTION 10-16-13 H.ZHANG,J.A.ENDRIZZI,Y.SHU,F.HAQUE,C.SAUTER,P.GUO,Y.-I.CHI PHI29 DNA PACKAGING MOTOR PRNA CORE ELEMENT, RNA 3.05 synthetic,synthetic,synthetic 4DV4 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, A914G X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME 3.65 THERMUS THERMOPHILUS 3G9C CRYSTAL STRUCTURE OF THE PRODUCT BACILLUS ANTHRACIS GLMS RIBOZYME X-RAY DIFFRACTION 11-03-09 S.A.STROBEL,J.C.COCHRANE,S.V.LIPCHOCK,K.D.SMITH CATALYTIC RNA, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME 2.90 synthetic,synthetic 2HEM NMR STRUCTURE AND MG2+ BINDING OF AN RNA SEGMENT THAT UNDERLIES THE L7/L12 STALK IN THE E.COLI 50S RIBOSOMAL SUBUNIT. SOLUTION NMR 9-12-06 Q.ZHAO,U.NAGASWAMY,H.LEE,Y.XIA,X.GAO,G.FOX S RRNA, BACKBONE DYNAMICS, CIS WATSON-CRICK G A PAIR, G A MISMATCH, HELIX 42, L7/L12 STALK, MG2+ BINDING, TANDEM (G A)2 synthetic 3UZT STRUCTURE OF THE C13.18 RNA APTAMER IN COMPLEX WITH G PROTEIN-COUPLED RECEPTOR KINASE 2 X-RAY DIFFRACTION 7-11-12 J.J.G.TESMER,V.M.TESMER PROTEIN-RNA COMPLEX, PROTEIN KINASE FOLD, RGS HOMOLOGY DOMAIN, PLECKSTRIN HOMOLOGY DOMAIN, G PROTEIN-COUPLED RECEPTOR PHOSPHORYLATION, RNA APTAMER, TRANSFERASE-RNA COMPLEX 3.51 synthetic 2AAR STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOSOME. X-RAY DIFFRACTION 8-23-05 D.BARAM,E.PYETAN,A.SITTNER,T.AUERBACH-NEVO,A.BASHAN,A.YONATH TRIGGER FACTOR, 50S, RIBOSOME, CHEPERONE, TUNNEL 3.50 DEINOCOCCUS RADIODURANS 1OKF NMR STRUCTURE OF AN ALPHA-L-LNA:RNA HYBRID SOLUTION NMR 10-09-03 J.T.NIELSEN,P.C.STEIN,M.PETERSEN DNA-RNA HYBRID, DNA/RNA HYBRID, ALPHA-L-LNA, LNA, RNA, NMR, RNASE H, LOCKED NUCLEIC ACID synthetic 3IZE MODEL OF THE SMALL SUBUNIT RNA BASED ON A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME ELECTRON MICROSCOPY 12-01-10 J.-P.ARMACHE,A.JARASCH,A.M.ANGER,E.VILLA,T.BECKER,S.BHUSHAN, F.JOSSINET,M.HABECK,G.DINDAR,S.FRANCKENBERG,V.MARQUEZ,T.MIELKE, M.THOMM,O.BERNINGHAUSEN,B.BEATRIX,J.SOEDING,E.WESTHOF,D.N.WILSON, R.BECKMANN EUKARYOTIC RIBOSOME, HOMOLOGY MODELING, DE NOVO MODELING, RIBOSOMAL RNA, RRNA, RNA EXPANSION SEGMENTS, RIBOSOME 10 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 4HOR CRYSTAL STRUCTURE OF FULL-LENGTH HUMAN IFIT5 WITH 5`-TRIPHOSPHATE OLIGOCYTIDINE X-RAY DIFFRACTION 1-23-13 Y.M.ABBAS,A.PICHLMAIR,M.W.GORNA,G.SUPERTI-FURGA,B.NAGAR TPR, RNA BINDING, ANTIVIRAL, RNA, RNA BINDING PROTEIN-RNA COMPLEX 1.86 synthetic 2KUW SOLUTION STRUCTURE OF K10 TLS RNA (A-FORM MUTANT IN LOWER HELIX) SOLUTION NMR 5-19-10 S.L.BULLOCK,I.RINGEL,D.ISH-HOROWICZ,P.J.LUKAVSKY RNA TRANSPORT, RNA HAIRPIN, RNA DROSOPHILA MELANOGASTER 3FIC T. THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, TRNAS AND EF-TU.GDP.KIRROMYCIN TERNARY COMPLEX, FITTED TO A 6.4 A CRYO-EM MAP. THIS FILE CONTAINS THE 30S SUBUNIT AND THE LIGANDS ELECTRON MICROSCOPY 3-03-09 J.-C.SCHUETTE,C.M.T.SPAHN CRYO-ELECTRON MICROSCOPY/ELONGATION FACTOR/GTPASE/RIBOSOME/TRANSLATION, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, CYTOPLASM, ELONGATION FACTOR, GTP-BINDING, NUCLEOTIDE- BINDING, PHOSPHOPROTEIN, PROTEIN BIOSYNTHESIS 6.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic,synthetic 4KJ8 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME, RIBOSOME- ANTIBIOTIC COMPLEX 2.90 ESCHERICHIA COLI 1DDL DESMODIUM YELLOW MOTTLE TYMOVIRUS X-RAY DIFFRACTION 10-30-00 S.B.LARSON,J.DAY,M.A.CANADY,A.GREENWOOD,A.MCPHERSON PLANT VIRUS, DYMV, CAPSID PROTEIN, COAT PROTEIN, TYMOVIRUSES, WATER STRUCTURE, RNA, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.70 synthetic,synthetic 1DFU CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION X-RAY DIFFRACTION 12-02-99 M.LU,T.A.STEITZ PROTEIN-RNA COMPLEX, RIBOSOME 1.80 synthetic,synthetic 1HLX P1 HELIX NUCLEIC ACIDS (DNA/RNA) RIBONUCLEIC ACID SOLUTION NMR 9-15-95 F.H.-T.ALLAIN,G.VARANI RNA, NMR, DOUBLE HELIX, GROUP I, SELF-SPLICING INTRON, UUCG TETRALOOP HAIRPIN, WOBBLE PAIR synthetic 2KPD STRUCTURE DETERMINATION OF THE TOP-LOOP OF THE CONSERVED 3 TERMINAL SECONDARY STRUCTURE IN THE GENOME OF YFV-MUTANT SOLUTION NMR 6-30-10 E.LESCRINIER,N.DYUBANKOVA,K.NAUWELAERTS,R.JONES,P.HERDEWIJN YELLOW FEVER VIRUS MUTANT, 3'-TERMINAL LOOP, GENOME, RNA synthetic 3J4X E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN CLASSIC PRE- TRANSLOCATION STATE (PRE1B, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1F7I SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURES SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, C70U MUTANT, METAL BINDING SITE, METAL COMPLEX, COBALT (III) HEXAMMINE COMPLEX synthetic 1FL8 HYPERMODIFIED NUCLEOSIDES IN THE ANTICODON OF TRNALYS STABILIZE A CANONICAL U-TURN STRUCTURE SOLUTION NMR 10-16-00 M.SUNDARAM,P.C.DURANT,D.R.DAVIS TRNA, ANTICODON, PSEUDOURIDINE, MNM5S2U, T6A synthetic 1MSW STRUCTURAL BASIS FOR THE TRANSITION FROM INITIATION TO ELONGATION TRANSCRIPTION IN T7 RNA POLYMERASE X-RAY DIFFRACTION 11-15-02 Y.W.YIN,T.A.STEITZ T7RNAP ELONGATION COMPLEX, TRANSCRIPTION/DNA/RNA COMPLEX 2.10 synthetic 1KOD RNA APTAMER COMPLEXED WITH CITRULLINE, NMR SOLUTION NMR 11-08-96 Y.S.YANG,M.KOCHOYAN,P.BURGSTALLER,E.WESTHOF,M.FAMULOK IN VITRO SELECTED RNA, RNA APTAMER synthetic,synthetic 2VOD CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER AUAUUUU X-RAY DIFFRACTION 5-06-08 O.KOTIK-KOGAN,E.R.VALENTINE,D.SANFELICE,M.R.CONTE,S.CURRY RNA RECOGNITION MOTIF, SYSTEMIC LUPUS ERYTHEMATOSUS, PHOSPHOPROTEIN, RNA MATURATION, RNA-BINDING PROTEIN, NUCLEUS, LA MOTIF, RNA-BINDING, POLYMORPHISM 2.1 HOMO SAPIENS 1UTF THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A RNA MOLECULE CONTAINING UAGAU REPEATS (PART I) X-RAY DIFFRACTION 1-15-04 N.H.HOPCROFT,A.MANFREDO,A.L.WENDT,A.M.BRZOZOWSKI,P.GOLLNICK, A.A.ANTSON RNA BINDING PROTEIN, TRANSCRIPTION ATTENUATION, RNA-BINDING PROTEIN, TRP RNA 1.90 BACILLUS STEAROTHERMOPHILUS 3OFD CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CHLORAMPHENICOL. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, CHLORAMPHENICOL, RIBOSOME 3.19 ESCHERICHIA COLI,ESCHERICHIA COLI 1S1H STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1H, CONTAINS 40S SUBUNIT. THE 60S RIBOSOMAL SUBUNIT IS IN FILE 1S1I. ELECTRON MICROSCOPY 5-25-04 C.M.SPAHN,M.G.GOMEZ-LORENZO,R.A.GRASSUCCI,R.JORGENSEN, G.R.ANDERSEN,R.BECKMANN,P.A.PENCZEK,J.P.G.BALLESTA,J.FRANK S RIBOSOME, 40S RIBOSOMAL SUBUNIT, EEF2, TRNA TRANSLOCATION, SORDARIN, CRYO-EM 11.70 SACCHAROMYCES CEREVISIAE 3CCQ STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION A2488U X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL GENOMIC SEQUNECE FOR R-PROTEINS, RIBOSOME 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 4KFK CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND WITH THE Q253P MUTANT OF RELEASE FACTOR RF2. 30S OF THE B SUBUNIT X-RAY DIFFRACTION 7-03-13 N.SANTOS,J.ZHU,J.P.DONOHUE,A.A.KOROSTELEV,H.F.NOLLER RIBOSOME, RELEASE FACTOR 2 MUTANT 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4EI3 CRYSTAL STRUCTURE OF HUMAN ARGONAUTE2 X-RAY DIFFRACTION 5-02-12 N.T.SCHIRLE,I.J.MACRAE RNA INTERFERENCE, PROTEIN-RNA COMPLEX, AGO, HYDROLASE-RNA COMPLEX 2.89 HOMO SAPIENS 3MUR CRYSTAL STRUCTURE OF THE C92U MUTANT C-DI-GMP RIBOSWITH BOUND TO C-DI- GMP X-RAY DIFFRACTION 8-25-10 S.A.STROBEL,K.D.SMITH RNA, RIBOSWITCH, C-DI-GMP, RNA BINDING PROTEIN-RNA COMPLEX 3.00 synthetic 1YMO SOLUTION STRUCTURE OF THE P2B-P3 PSEUDOKNOT FROM HUMAN TELOMERASE RNA SOLUTION NMR 3-15-05 C.A.THEIMER,C.A.BLOIS,J.FEIGON PSEUDOKNOT, NON-CANONICAL, TERTIARY STRUCTURE, HOOGSTEEN, TRIPLEX, RNA synthetic 4KHP STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH DE-6-MSA-PACTAMYCIN X-RAY DIFFRACTION 6-05-13 D.S.TOURIGNY,I.S.FERNANDEZ,A.C.KELLEY,V.RAMAKRISHNAN PACTAMYCIN, 30S, MRNA, E SITE, TRNA, RIBOSOME, TRANSLATION, ANTIBIOTIC, RIBOSOME-ANTIBIOTIC COMPLEX, DE-6-MSA-PACTAMYCIN AND PACTAMYCIN ANALOG 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1F9L SOLUTION STRUCTURE OF A 22-NUCLEOTIDE HAIRPIN SIMILAR TO THE P5ABC REGION OF A GROUP I RIBOZYME WITH COBALT(III) HEXAMMINE COMPLEXED TO THE GAAA TETRALOOP SOLUTION NMR 7-26-00 S.RUDISSER,I.TINOCO JR. GA MISMATCHES, GAAA TETRALOOP, METAL-ION BINDING, COBALT(III)HEXAMMINE, HAIRPIN, P5ABC, GROUP I INTRON, RNA synthetic 3J00 STRUCTURE OF THE RIBOSOME-SECYE COMPLEX IN THE MEMBRANE ENVIRONMENT ELECTRON MICROSCOPY 4-20-11 J.FRAUENFELD,J.GUMBART,E.O.VAN DER SLUIS,S.FUNES,M.GARTMANN, B.BEATRIX,T.MIELKE,O.BERNINGHAUSEN,T.BECKER,K.SCHULTEN,R.BECKMANN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, TRANSLATION, ZINC-FINGER, 70S RIBOSOME, RIBOSOME, TRANSLOCON, SECYEG, NANODISC, RIBOSOME-RIBOSOMAL PROTEIN COMPLEX 7.10 ESCHERICHIA COLI,ESCHERICHIA COLI DH1,ESCHERICHIA COLI 1S76 T7 RNA POLYMERASE ALPHA BETA METHYLENE ATP ELONGATION COMPLEX X-RAY DIFFRACTION 3-23-04 Y.W.YIN,T.A.STEITZ T7 RNA POLYMERASE, TRANSFERASE 2.88 synthetic 1U6B CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS X-RAY DIFFRACTION 8-10-04 P.L.ADAMS,M.R.STAHLEY,A.B.KOSEK,J.WANG,S.A.STROBEL INTRON, EXON, RIBOZYME, GROUP I, U1A, RNA, STRUCTURAL PROTEIN/RNA COMPLEX 3.10 synthetic,synthetic,synthetic 1QWA NMR STRUCTURE OF 5'-R(GGAUGCCUCCCGAGUGCAUCC): AN RNA HAIRPIN DERIVED FROM THE MOUSE 5'ETS THAT BINDS NUCLEOLIN RBD12. SOLUTION NMR 11-25-03 L.D.FINGER,L.TRANTIREK,C.JOHANSSON,J.FEIGON TETRALOOP, UNCG, UUCG, YNMG, BULGED NUCLEOTIDE, HAIRPIN, A- FORM HELIX, RNA synthetic 3B0U TRNA-DIHYDROURIDINE SYNTHASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA FRAGMENT X-RAY DIFFRACTION 12-14-11 F.YU,Y.TANAKA,K.YAMASHITA,A.NAKAMURA,M.YAO,I.TANAKA TIM BARREL, OXIDOREDUCTASE-RNA COMPLEX 1.95 THERMUS THERMOPHILUS 4AOB SAM-I RIBOSWITCH CONTAINING THE T. SOLENOPSAE KT-23 IN COMPLEX WITH S-ADENOSYL METHIONINE X-RAY DIFFRACTION 5-09-12 K.T.SCHROEDER,P.DALDROP,S.A.MCPHEE,D.M.J.LILLEY TRANSLATION, K-TURN, RNA 2.95 THERMOANAEROBACTER TENGCONGENSIS 2C4Y MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX X-RAY DIFFRACTION 1-05-06 E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, VIRUS COAT PROTEIN, RNA- BINDING, ICOSAHEDRAL VIRUS 2.68 ENTEROBACTERIO PHAGE MS2 1RGO STRUCTURAL BASIS FOR RECOGNITION OF THE MRNA CLASS II AU- RICH ELEMENT BY THE TANDEM ZINC FINGER DOMAIN OF TIS11D SOLUTION NMR 3-02-04 B.P.HUDSON,M.A.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT TIS11 TTP TRISTETRAPROLIN BUTYRATE RESPONSE FACTOR ERF NUP475 ZFP ZN ZINC FINGER RNA SS SINGLE-STRANDED ARE UTR TANDEM INTERCALATION INTERCALATE SPECIFIC, RNA BINDING PROTEIN HOMO SAPIENS 2BGG THE STRUCTURE OF A PIWI PROTEIN FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH A 16NT SIRNA DUPLEX. X-RAY DIFFRACTION 3-31-05 J.S.PARKER,S.M.ROE,D.BARFORD RNA-BINDING PROTEIN/RNA, ARGONAUTE, PIWI DOMAIN, RNAI, RISC, PROTEIN/RNA COMPLEX 2.2 synthetic,synthetic 2AHT SOLUTION STRUCTURE OF DOMAIN 6 FROM THE AI5(GAMMA)GROUP II INTRON SOLUTION NMR 10-17-06 M.C.ERAT,O.ZERBE,T.FOX,R.K.O.SIGEL GROUP II INTRON, RIBOZYME, SPLICING, BRANCHING, DOMAIN 6, RNA, TETRALOOP, BRANCH-POINT A, GU WOBBLE PAIRS, METAL ION, MAGNESIUM synthetic 2VAL CRYSTAL STRUCTURE OF AN ESCHERICHIA COLI TRNAGLY MICROHELIX AT 2.0 ANGSTROM RESOLUTION X-RAY DIFFRACTION 10-16-07 C.FORSTER,A.B.E.BRAUER,M.PERBANDT,D.LEHMANN,J.P.FURSTE, C.BETZEL,V.A.ERDMANN RNA, GLYCYL-TRNA SYNTHETASE (GLYRS) SYSTEM, TRNAGLY ACCEPTOR STEM MICROHELIX, RNA TRNA IDENTITY ELEMENTS, MAGNESIUM BINDING SITES 2.00 ESCHERICHIA COLI,ESCHERICHIA COLI 2WRR THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA (PART 4 OF 4). X-RAY DIFFRACTION 10-20-09 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, ELONGATION FACTOR G, TRANSLOCATION, TRANSLATION, PROTEIN SYNTHESIS, EF-TU, GTPASE 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4H6F CRYSTAL STRUCTURE OF RIFT VALLEY FEVER VIRUS NUCLEOCAPSID PROTEIN HEXAMER BOUND TO SINGLE-STRANDED RNA. THIS ENTRY CONTAINS THREE OUT OF SIX HEXAMERS BOUND TO RNA. X-RAY DIFFRACTION 11-07-12 D.D.RAYMOND,J.L.SMITH NUCLEOCAPSID PROTEIN, N PROTEIN, RIBONUCLEOPROTEIN, VIRAL NUCLEOPROTEIN, RNA BINDING, VIRUS, RNP, VIRAL PROTEIN-RNA COMPLEX 3.40 synthetic 2IXY SOLUTION STRUCTURE OF THE APICAL STEM-LOOP OF THE HUMAN HEPATITIS B VIRUS ENCAPSIDATION SIGNAL SOLUTION NMR 9-06-06 S.FLODELL,M.PETERSEN,F.GIRARD,J.ZDUNEK,K.KIDD-LJUNGGREN, J.SCHLEUCHER,S.S.WIJMENGA HBV, RDC, RNA, PSEUDO TRILOOP HEPATITIS B VIRUS 2DXI .2 A CRYSTAL STRUCTURE OF GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNA(GLU), ATP, AND L- GLUTAMOL X-RAY DIFFRACTION 10-31-06 S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) LIGASE, RNA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE/RNA COMPLEX 2.20 synthetic 4KJC CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME 2.90 ESCHERICHIA COLI 4B3T STRUCTURE OF RIBOSOME 30S-ETH-63 COMPLEX X-RAY DIFFRACTION 8-07-13 C.L.NG,K.LANG,D.SHCHERBAKOV,T.MATT,D.PEREZ-FERNANDEZ,R.PATAK,M.MEYER, S.DUSCHA,R.AKBERGENOV,H.BOUKARI,P.FREIHOFER,I.KUDYBA,M.S.K.REDDY, R.S.NANDURIKAR,V.RAMAKRISHNAN,A.VASELLA,E.C.BOTTGER RIBOSOME, AMINOGLYCOSIDE, ANTIBIOTIC 3.00 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 2X9T STRUCTURE OF THE 70S RIBOSOME BOUND TO RELEASE FACTOR 2 AND A SUBSTRATE ANALOG PROVIDES INSIGHTS INTO CATALYSIS OF PEPTIDE RELEASE X-RAY DIFFRACTION 5-12-10 H.JIN,A.C.KELLEY,D.LOAKES,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRNA-BINDING, RRNA-BINDING, METAL-BINDING, RIBOSOME, ZINC-FINGER, TRANSLATION 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 4DHC CRYSTAL STRUCTURE OF YAEJ BOUND TO THE 70S RIBOSOME X-RAY DIFFRACTION 3-28-12 M.G.GAGNON,S.V.SEETHARAMAN,D.P.BULKLEY,T.A.STEITZ RIBOSOME, YAEJ, RIBOSOME STALLING, RIBOSOME RESCUE, RESCUE FACTOR, ALTERNATIVE RESCUE FACTOR, ARFB, RELEASE FACTOR, RESCUE OF STALLED RIBOSOMES 3.20 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3F4G CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO RIBOFLAVIN. X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG RIBOFLAVIN, FMN, RIBOSWITCH, TRANSCRIPTION, RNA 3.01 synthetic,synthetic 3SZX CRYSTAL STRUCTURE OF THE TRIPLET REPEAT IN MYOTONIC DYSTROPHY REVEALS HETEROGENEOUS 1X1 NUCLEOTIDE UU INTERNAL LOOP CONFORMATIONS X-RAY DIFFRACTION 4-25-12 A.KUMAR,H.PARK,F.PENGFEI,R.PARKESH,M.GUO,K.W.NETTLES,M.D.DISNEY CUG REPEAT RNA, RNA 2.20 synthetic 4BBL CRYO-ELECTRON MICROSCOPY RECONSTRUCTION OF THE HELICAL PART OF INFLUENZA A VIRUS RIBONUCLEOPROTEIN ISOLATED FROM VIRIONS. ELECTRON MICROSCOPY 12-05-12 R.ARRANZ,R.COLOMA,F.J.CHICHON,J.J.CONESA,J.L.CARRASCOSA, J.M.VALPUESTA,J.ORTIN,J.MARTIN-BENITO NUCLEAR PROTEIN, NUCLEOCAPSID 18.00 INFLUENZA A VIRUS 3KNC CRYSTAL STRUCTURE OF THE CENA-RNA HYBRID OCTAMER CE(GCGTAGCG) :R(CGCUACGC) X-RAY DIFFRACTION 12-08-10 M.OVAERE,L.VAN MEERVELT CYCLOHEXENE, SUGAR MODIFICATION, RNA, RNA-CYCLOHEXENE-RNA HYBRID COMPLEX 2.50 synthetic 3CGS X-RAY STRUCTURE CONTAINING THE PSEUDOURIDYLATED U2 SNRNA AND MAMMALIAN INTRON BRANCH SITE CONSENSUS SEQUENCES X-RAY DIFFRACTION 7-01-08 Y.LIN,C.L.KIELKOPF RNA DOUBLE HELIX, BRANCHPOINT SEQUENCE, BPS, U2 SNRNA, PSEUDOURIDINE, PRE-MRNA SPLICING 1.65 synthetic,synthetic 1C04 IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI X-RAY DIFFRACTION 8-31-99 N.BAN,P.NISSEN,M.CAPEL,P.B.MOORE,T.A.STEITZ LOW RESOLUTION MODEL, LARGE RIBOSOME UNIT 5.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3O8C VISUALIZING ATP-DEPENDENT RNA TRANSLOCATION BY THE NS3 HELICASE FROM HCV X-RAY DIFFRACTION 1-05-11 T.C.APPLEBY,J.R.SOMOZA HELICASE, NTPASE, HCV, RNA, TRANSLOCATION, PROTEASE/NTPASE/HELICASE, HYDROLASE-RNA COMPLEX 2.00 synthetic 3UZ8 CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-TYR COMPLEX. X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3IQR SAM-I RIBOSWITCH FROM T. TENCONGENSIS VARIANT A94G BOUND WITH SAM X-RAY DIFFRACTION 8-04-10 R.K.MONTANGE,R.T.BATEY RIBOSWITCH, SAM, KINK-TURN, PSUEDOKNOT, RNA 2.55 synthetic 1M90 CO-CRYSTAL STRUCTURE OF CCA-PHE-CAPROIC ACID-BIOTIN AND SPARSOMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 9-06-02 J.L.HANSEN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ P-SITE, SPARSOMYCIN, RIBOSOME 2.80 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 3CD6 CO-CYSTAL OF LARGE RIBOSOMAL SUBUNIT MUTANT G2616A WITH CC- PUROMYCIN X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL G2616A MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, CC- PUROMYCIN, RIBOSOME 2.75 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 2I2P CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-24-06 V.BERK,W.ZHANG,R.D.PAI,J.H.D.CATE S RIBOSOMAL SUBUNIT, PROTEIN-NUCLEIC ACID COMPLEXES, RIBOSOME 3.22 ESCHERICHIA COLI,synthetic,synthetic 1OND THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC X-RAY DIFFRACTION 4-15-03 R.BERISIO,F.SCHLUENZEN,J.HARMS,A.BASHAN,T.AUERBACH,D.BARAM, A.YONATH RIBOSOMES, TRNA, MACROLIDE, ANTIBIOTIC, EXIT-TUNNEL L22, BLOCKAGE 3.40 DEINOCOCCUS RADIODURANS 4KJ1 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 3OXJ CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, SOAKED IN BA2+ X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 3.20 synthetic 4DV0 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, U20G X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME 3.85 THERMUS THERMOPHILUS 2G8U B. HALODURANS RNASE H CATALYTIC DOMAIN D132N MUTANT IN COMPLEX WITH MG2+ AND RNA/DNA HYBRID (NON-P NICK AT THE ACTIVE SITE) X-RAY DIFFRACTION 4-25-06 M.NOWOTNY,W.YANG RNASE H, RIBONUCLEASE H, RNA/DNA HYBRID, HYDROLASE/RNA/DNA COMPLEX 2.70 synthetic 2D17 SOLUTION RNA STRUCTURE OF STEM-BULGE-STEM REGION OF THE HIV- 1 DIMERIZATION INITIATION SITE SOLUTION NMR 11-01-05 S.BABA,K.TAKAHASHI,S.NOGUCHI,H.TAKAKU,Y.KOYANAGI,N.YAMAMOTO, G.KAWAI DIS, HIV-1, RNA, STRUCTURE, NMR synthetic,synthetic 3SNP CRYSTAL STRUCTURE ANALYSIS OF IRON REGULATORY PROTEIN 1 IN COMPLEX WITH FERRITIN H IRE RNA X-RAY DIFFRACTION 7-27-11 K.VOLZ,A.I.SELEZNEVA,W.E.WALDEN RNA BINDING, IRON SULFUR CLUSTER BINDING, PHOSPHORYLATION, LYASE-RNA COMPLEX 2.80 synthetic 1VOW CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI 4GKJ STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN MITOCHONDRIAL ANTICODON STEM LOOP (ASL) OF TRANSFER RNA METHIONINE (TRNAMET) BOUND TO AN MRNA WITH AN AUG-CODON IN THE A-SITE AND PAROMOMYCIN. X-RAY DIFFRACTION 6-05-13 W.A.CANTARA,F.V.MURPHY IV,J.L.SPEARS,H.DEMIRCI,P.F.AGRIS TRANSLATION INITIATION, 5-FORMYLCYTIDINE, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,SYNTHETIC,SYNTHETIC 2KEZ NMR STRUCTURE OF U6 ISL AT PH 8.0 SOLUTION NMR 7-21-09 V.VENDITTI,S.E.BUTCHER U6 RNA, STEM LOOP, BULGE, INTERNAL LOOP synthetic 3G78 INSIGHT INTO GROUP II INTRON CATALYSIS FROM REVISED CRYSTAL STRUCTURE X-RAY DIFFRACTION 2-16-10 J.WANG REVISED CRYSTAL STRUCTURE, REVISION, RNA 2.80 OCEANOBACILLUS IHEYENSIS,synthetic 2AD9 SOLUTION STRUCTURE OF POLYPYRIMIDINE TRACT BINDING PROTEIN RBD1 COMPLEXED WITH CUCUCU RNA SOLUTION NMR 10-04-05 F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS,A.HENNING, P.WENTER,L.REYMOND,S.PITSCH,D.L.BLACK,F.H.T.ALLAIN RBD, RRM, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX HOMO SAPIENS 1VC7 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN SR2+ SOLUTION X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 2.45 synthetic 1P6G REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME ELECTRON MICROSCOPY 6-17-03 H.GAO,J.SENGUPTA,M.VALLE,A KOROSTELEV,N.ESWAR,S.M.STAGG, P.VAN ROEY,R.K.AGRAWAL,S.T.HARVEY,A.SALI,M.S.CHAPMAN,J.FRANK EFG-GTP-BOUND STATE, RATCHET-LIKE MOVEMENT, REAL-SPACE REFINEMENT, RIBOSOME 12.30 ESCHERICHIA COLI 2XZN CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1. THIS FILE CONTAINS THE 40S SUBUNIT AND INITIATION FACTOR FOR MOLECULE 2 X-RAY DIFFRACTION 1-19-11 J.RABL,M.LEIBUNDGUT,S.F.ATAIDE,A.HAAG,N.BAN RIBOSOME, 40S, TRANSLATION 3.93 TETRAHYMENA THERMOPHILA 2WRI THE STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE POST-TRANSLOCATIONAL STATE (PART 1 OF 4). X-RAY DIFFRACTION 10-20-09 Y.-G.GAO,M.SELMER,C.M.DUNHAM,A.WEIXLBAUMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOME, ZINC-FINGER, RNA-BINDING, TRANSLATION, RRNA-BINDING, PROTEIN BIOSYNTHESIS, ELONGATION FACTOR, RIBOSOMAL PROTEIN, TRNA-BINDING, TRANSLOCATION, METAL-BINDING, NUCLEOTIDE-BINDING, ELONGATION FACTOR G, RIBONUCLEOPROTEIN, PROTEIN SYNTHESIS 3.60 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 2OW8 CRYSTAL STRUCTURE OF A 70S RIBOSOME-TRNA COMPLEX REVEALS FUNCTIONAL INTERACTIONS AND REARRANGEMENTS. THIS FILE, 2OW8, CONTAINS THE 30S RIBOSOME SUBUNIT, TWO TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1VSA. X-RAY DIFFRACTION 5-15-07 A.KOROSTELEV,S.TRAKHANOV,M.LAURBERG,H.F.NOLLER CRYSTAL STRUCTURE, RIBOSOME, FUNCTIONAL COMPLEX, TRNA, E SITE, P SITE, PEPTIDYL TRANSFERASE CENTER 3.71 THERMUS THERMOPHILUS HB27,ESCHERICHIA COLI,THERMUS THERMOPHILUS HB27,synthetic 3I20 CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, ACETYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN 3.71 ESCHERICHIA COLI K-12,ESCHERICHIA COLI K-12 1J1U CRYSTAL STRUCTURE OF ARCHAEAL TYROSYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(TYR) AND L-TYROSINE X-RAY DIFFRACTION 6-03-03 T.KOBAYASHI,O.NUREKI,R.ISHITANI,M.TUKALO,S.CUSACK, K.SAKAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) AMINOACYL-TRNA SYNTHETASE, LIGASE, TRNA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 1.95 synthetic 3AOI RNA POLYMERASE-GFH1 COMPLEX (CRYSTAL TYPE 2) X-RAY DIFFRACTION 12-08-10 S.TAGAMI,S.SEKINE,T.KUMAREVEL,M.YAMAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION, TRANSFERASE-DNA-RNA COMPLEX 4.30 synthetic 4A1B T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 26S RRNA AND PROTEINS OF MOLECULE 3. X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA 3I8G ELONGATION COMPLEX OF THE 70S RIBOSOME WITH THREE TRNAS AND MRNA. THIS ENTRY 3I8G CONTAINS 30S RIBOSOMAL SUBNIT.THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I8F. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I8G (30S) AND 3I8F (50S). X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA, 16S RIBOSOMAL RNA, RIBOSOMAL RNA, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 1VQ8 THE STRUCTURE OF CCDA-PHE-CAP-BIO AND THE ANTIBIOTIC SPARSOMYCIN BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.20 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 3T5Q A STRUCTURE OF LASSA VIRUS NUCLEOPROTEIN IN COMPLEX WITH SSRNA X-RAY DIFFRACTION 1-11-12 K.M.HASTIE,T.LIU,L.B.KING,N.NGO,M.A.ZANDONATTI,V.L.WOODS,J.C.DE LA TORRE,E.O.SAPHIRE SSRNA, SINGLE STRANDED RNA, VIRAL PROTEIN-RNA COMPLEX 3.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2WWL E.COLI 70S RIBOSOME STALLED DURING TRANSLATION OF TNAC LEADER PEPTIDE. THIS FILE CONTAINS THE 30S, THE P-SITE TRNA AND THE TNAC LEADER PEPTIDE (PART 1 OF 2). ELECTRON MICROSCOPY 4-14-10 B.SEIDELT,C.A.INNIS,D.N.WILSON,M.GARTMANN,J.ARMACHE,E.VILLA, L.G.TRABUCO,T.BECKER,T.MIELKE,K.SCHULTEN,T.A.STEITZ, R.BECKMANN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, TRANSLATION, ZINC-FINGER, TNAC, 70S RIBOSOME, STALLING, RIBOSOME 5.80 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1VOP CONSERVED RNA COMPONENT OF THE PEPTIDYL TRANSFERASE CENTER, NMR, 33 STRUCTURES SOLUTION NMR 12-24-97 E.V.PUGLISI,J.D.PUGLISI RIBOSOMAL RNA, HAIRPIN LOOP synthetic 3J5I E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST3B, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3DF4 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH HYGROMYCIN B. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-19-08 M.A.BOROVINSKAYA,S.SHOJI,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI,ESCHERICHIA COLI 3B4A T. TENGCONGENSIS GLMS RIBOZYME WITH G40A MUTATION, BOUND TO GLUCOSAMINE-6-PHOSPHATE X-RAY DIFFRACTION 12-11-07 D.J.KLEIN,A.R.FERRE-D'AMARE RIBOZYME, RIBOSWITCH, GLUCOSAMINE-6-PHOSPHATE, RNA 2.70 THERMOANAEROBACTER TENGCONGENSIS,THERMOANAEROBACTER TENGCONGENSIS 2FEY THE STRUCTURE OF STEM LOOP IV OF TETRAHYMENA TELOMERASE RNA SOLUTION NMR 6-27-06 Y.CHEN,J.FENDER,J.D.LEGASSIE,M.B.JARSTFER,T.M.BRYAN,G.VARANI TELOMERASE RNA, TETRAHYMENA, STEM-LOOP IV, NMR STRUCTURE, HEPTALOOP synthetic 3VYY STRUCTURAL INSIGHTS INTO RISC ASSEMBLY FACILITATED BY DSRNA BINDING DOMAINS OF HUMAN RNA HELICASE A (DHX9) X-RAY DIFFRACTION 2-13-13 Y.A.YUAN,Q.FU DSRBD-DSRNA COMPLEX, DSRBD FOLD, DSRNA BINDING, PROTEIN-PROTEIN INTERACTION, HYDROLASE-RNA COMPLEX 2.90 synthetic 1NAO SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE CENTER, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 1-27-97 T.NISHIZAKI,S.IWAI,E.OHTSUKA,H.NAKAMURA DNA/RNA DUPLEX, DNA-RNA HYBRID synthetic 1ETG REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, 19 STRUCTURES SOLUTION NMR 3-12-97 J.L.BATTISTE,H.MAO,N.S.RAO,R.TAN,D.R.MUHANDIRAM,L.E.KAY, A.D.FRANKEL,J.R.WILLAMSON COMPLEX (RNA/PROTEIN), EXPORT REGULATOR, MRNA SPLICING, TRANSCRIPTION REGULATION, VIRAL PROTEIN/RNA COMPLEX synthetic 4MEG IN VITRO EVOLVED GLMS RIBOZYME TRIPLE MUTANT, MAGNESIUM ION COMPLEX X-RAY DIFFRACTION 10-16-13 M.W.L.LAU,A.R.FERRE-D'AMARE GLMS RIBOZYME FOLD, RNA, SELF-CLEAVAGE, TRANSESTERIFICATION, METALLORIBOZYME 3.10 synthetic,synthetic 3I1Z CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE 3.71 ESCHERICHIA COLI,synthetic,synthetic 3HOW COMPLETE RNA POLYMERASE II ELONGATION COMPLEX III WITH A T-U MISMATCH AND A FRAYED RNA 3'-URIDINE X-RAY DIFFRACTION 7-28-09 J.F.SYDOW,F.BRUECKNER,A.C.M.CHEUNG,G.E.DAMSMA,S.DENGL, E.LEHMANN,D.VASSYLYEV,P.CRAMER RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, DNA-RNA MISMATCH, RNA FRAYING, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID COMPLEX 3.60 synthetic 1UUD NMR STRUCTURE OF A SYNTHETIC SMALL MOLECULE, RBT203, BOUND TO HIV-1 TAR RNA SOLUTION NMR 3-15-04 B.DAVIS,M.AFSHAR,G.VARANI,J.KARN,A.I.H.MURCHIE,G.LENTZEN, M.J.DRYSDALE,A.J.POTTER,J.BOWER,F.ABOUL-ELA HIV-1, TAR RNA, DRUG DESIGN, LIGAND-RNA INTERACTION, RNA BULGE HUMAN IMMUNODEFICIENCY VIRUS 1 (CLONE 4C8Y CAS6 (TTHA0078) SUBSTRATE MIMIC COMPLEX X-RAY DIFFRACTION 11-06-13 M.JINEK,O.NIEWOEHNER,J.A.DOUDNA RNA BINDING PROTEIN-RNA COMPLEX, CRISPR CAS PROTEIN RNA, PROCESSING RIBONUCLEASE 1.80 synthetic 1TN1 CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)- CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA X-RAY DIFFRACTION 1-15-87 J.C.DEWAN,R.S.BROWN,B.E.HINGERTY,A.KLUG TRANSLATION, RNA 3.00 SACCHAROMYCES CEREVISIAE 4E8R STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN A LIGAND-FREE STATE IN THE PRESENCE OF CS+ AND MG2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, METALLOENZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA 3.36 OCEANOBACILLUS IHEYENSIS 2MIS NMR LOCALIZATION OF DIVALENT CATIONS AT THE ACTIVE SITE OF THE NEUROSPORA VS RIBOZYME PROVIDES INSIGHTS INTO RNA-METAL ION INTERACTIONS SOLUTION NMR 1-22-14 E.BONNEAU,P.LEGAULT RIBOZYME, VS, VARKUD SATELLITE, MAGNESIUM ION, ACTIVE SITE, RNA NEUROSPORA 4BHH CRYSTAL STRUCTURE OF TETRAMER OF LA CROSSE VIRUS NUCLEOPROTEIN IN COMPLEX WITH SSRNA X-RAY DIFFRACTION 4-24-13 J.REGUERA,H.MALET,F.WEBER,S.CUSACK VIRAL PROTEIN-RNA COMPLEX, RNA-BINDING, GENOME PACKAGING 3.40 SYNTHETIC CONSTRUCT 299D CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: THE HAMMERHEAD RIBOZYME X-RAY DIFFRACTION 1-24-97 W.G.SCOTT,J.B.MURRAY,J.R.P.ARNOLD,B.L.STODDARD,A.KLUG RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP 3.00 synthetic,synthetic 1T0K JOINT X-RAY AND NMR REFINEMENT OF YEAST L30E-MRNA COMPLEX X-RAY DIFFRACTION 7-20-04 J.A.CHAO,J.R.WILLIAMSON JOINT NMR AND X-RAY REFINEMENT, RIBOSOMAL PROTEIN L30E, MBP FUSION PROTEIN, RIBOSOME 3.24 synthetic,synthetic 2Y9B STRUCTURE OF THE SPLICEOSOMAL U4 SNRNP CORE DOMAIN X-RAY DIFFRACTION 5-11-11 A.K.W.LEUNG,K.NAGAI,J.LI SPLICING-RNA COMPLEX, PRE-MRNA SPLICING, SPLICEOSOME, SNRNP BIOGENESIS, SM SITE, SM FOLD, HETEROMERIC HEPTAMERIC RING, RNA BINDING 3.60 HOMO SAPIENS 1NYB SOLUTION STRUCTURE OF THE BACTERIOPHAGE PHI21 N PEPTIDE-BOXB RNA COMPLEX SOLUTION NMR 6-24-03 C.D.CILLEY,J.R.WILLIAMSON PEPTIDE-RNA COMPLEX, TRANSCRIPTION ANTITERMINATION, TRANSCRIPTION/RNA COMPLEX ENTEROBACTERIA PHAGE PHI21 4BYC STRUCTURE OF THERMUS THERMOPHILUS 50S RIBOSOME X-RAY DIFFRACTION 8-28-13 S.FENG,Y.CHEN,K.KAMADA,H.WANG,K.TANG,M.WANG,Y.G.GAO RIBOSOME, TOXIN-ANTITOXIN, RIBOSOME-DEPENDENT NUCLEASE, MRNA DEGRADATION, TRANSLATION REGULATION 3.35 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2LEB SOLUTION STRUCTURE OF HUMAN SRSF2 (SC35) RRM IN COMPLEX WITH 5'- UCCAGU-3' SOLUTION NMR 11-23-11 G.M.DAUBNER,A.CLERY,S.JAYNE,J.STEVENIN,F.H.-T.ALLAIN SR PROTEIN, SPLICING FACTOR, RNA PROTEIN COMPLEX, RNA BINDING PROTEIN-RNA COMPLEX synthetic 413D A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC) X-RAY DIFFRACTION 7-10-98 Y.TANAKA,S.FUJII,H.HIROAKI,T.SAKATA,T.TANAKA,S.UESUGI,K.- I.TOMITA,Y.KYOGOKU A'-RNA, DOUBLE HELIX 1.80 synthetic 2JYF TETRALOOP-RECEPTOR RNA COMPLEX SOLUTION NMR 10-07-08 X.ZUO,J.WANG,T.R.FOSTER,C.D.SCHWIETERS,D.M.TIEDE RNA STRUCTURE, RNA:RNA COMPLEX, TETRALOOP-RECEPTOR, GAAA- TETRALOOP, RNA GLOBAL STRUCTURE, COMPLEX INTERFACE, RNA/RNA COMPLEX synthetic 3BNS CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE (A1555G MUTANT, BR-DERIVATIVE) X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 1.90 synthetic,synthetic,synthetic 1JZC THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)- RNA SOLUTION NMR 10-07-03 C.-H.KIM,C.C.KAO RNA, BROME MOSAIC VIRUS, BMV, TRILOOP, NMR, REPLICATION, PROMOTER, RNA POLYMERASE synthetic 2WDN STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE II. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN METHYLATION, TRANSLATION, PAROMOMYCIN, TRNA-BINDING, TRNA, ZINC, MRNA, RIBOSOME, REPRESSOR, RNA-BINDING, RIBONUCLEOPROTEIN, TRANSLATION REGULATION, RRNA-BINDING, METAL-BINDING, RIBOSOMAL PROTEIN 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1Z2J SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT INDUCING ELEMENT SOLUTION NMR 6-14-05 D.W.STAPLE,S.E.BUTCHER STEM-LOOP, PURINE BULGE, TETRALOOP, RNA synthetic 1G2J RNA OCTAMER R(CCCP*GGGG) CONTAINING PHENYL RIBONUCLEOTIDE X-RAY DIFFRACTION 12-06-00 G.MINASOV,J.MATULIC-ADAMIC,C.J.WILDS,P.HAEBERLI,N.USMAN, L.BEIGELMAN,M.EGLI RNA DUPLEX, PHENYL-RIBONUCLEOTIDE 1.97 synthetic 1ZL3 COUPLING OF ACTIVE SITE MOTIONS AND RNA BINDING X-RAY DIFFRACTION 8-09-05 C.HOANG,C.S.HAMILTON,E.G.MUELLER,A.R.FERRE-D'AMARE RNA-MODIFICATION, INTER-DOMAIN COUPLING, PRODUCT RELEASE, LYASE/RNA COMPLEX 2.80 synthetic 17RA BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES SOLUTION NMR 4-20-99 E.P.NIKONOWICZ,J.S.SMITH BRANCHPOINT HELIX, PHAGE MS2, BULGE, BASE TRIPLE, RIBONUCLEIC ACID, RNA synthetic 1KC8 CO-CRYSTAL STRUCTURE OF BLASTICIDIN S BOUND TO THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 7-22-03 J.L.HANSEN,N.BAN,P.NISSEN,P.B.MOORE,T.A.STEITZ S SUBUNIT, BLASTICIDIN S, ANTIBIOTIC, P-LOOP, P-SITE, RIBOSOME 3.01 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3OLB POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH 2',3'-DIDEOXY-CTP X-RAY DIFFRACTION 12-22-10 P.GONG,O.B.PEERSEN RNA-DEPENDENT RNA POLYMERASE, ELONGATION COMPLEX, VIRUS, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.41 synthetic,synthetic,synthetic 2V6W TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-06-07 C.FOERSTER,A.B.E.BRAUER,S.BRODE,J.P.FUERSTE,C.BETZEL, V.A.ERDMANN E.COLI TRNASER ACCEPTOR STEM MICROHELIX, NUCLEIC ACID TRNA IDENTITY, 1.8 ANGSTROM RESOLUTION, HYDRATION PATTERN, RNA 1.80 ESCHERICHIA COLI,ESCHERICHIA COLI 2QBD CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.30 ESCHERICHIA COLI 1ZBL BACILLUS HALODURANS RNASE H CATALYTIC DOMAIN MUTANT D192N IN COMPLEX WITH 12-MER RNA/DNA HYBRID X-RAY DIFFRACTION 7-12-05 M.NOWOTNY,S.A.GAIDAMAKOV,R.J.CROUCH,W.YANG RNASE H, RNA/DNA HYBRID, DDE MOTIF, HYDROLASE/RNA/DNA COMPLEX 2.20 synthetic 3DG4 COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-BOUND TERMINATION COMPLEX ELECTRON MICROSCOPY 2-03-09 H.GAO,J.LEBARRON,J.FRANK RIBOSOME, TERMINATION, RATCHET MOTION 12.80 ESCHERICHIA COLI,ESCHERICHIA COLI 2DD1 THREE CONSECUTIVE SHEARED GA PAIRS IN 5'GGUGGAGGCU/3'PCCAAAGCCG SOLUTION NMR 6-13-06 G.CHEN,S.D.KENNEDY,T.R.KRUGH,D.H.TURNER THREE CONSECUTIVE SHEARED GA PAIRS, THERMODYNAMICS OF MOLECULAR RECOGNITION, K-TURN MOTIF, A-MINOR MOTIF, SECONDARY STRUCTURE OF RNA synthetic,synthetic 1DK1 DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX X-RAY DIFFRACTION 4-02-00 A.NIKULIN,A.SERGANOV,E.ENNIFAR,S.TISCHENKO,N.NEVSKAYA RIBOSOME, X-RAY, S15, PROTEIN, RNA 2.80 THERMUS THERMOPHILUS 3L26 CRYSTAL STRUCTURE OF ZAIRE EBOLA VP35 INTERFERON INHIBITORY DOMAIN BOUND TO 8 BP DSRNA X-RAY DIFFRACTION 1-26-10 D.W.LEUNG,K.C.PRINS,D.M.BOREK,M.FARAHBAKHSH,J.M.TUFARIELLO, P.RAMANAN,J.C.NIX,L.A.HELGESON,Z.OTWINOWSKI,R.B.HONZATKO, C.F.BASLER,G.K.AMARASINGHE RNA BINDING DOMAIN, COILED COIL, INTERFERON ANTIVIRAL EVASION, RNA REPLICATION, RNA BINDING PROTEIN, TRANSCRIPTION, HOST CYTOPLASM, INTERFERON ANTIVIRAL SYSTEM EVASION, RNA-BINDING, VIRION, RNA BINDING PROTEIN-RNA COMPLEX 2.40 synthetic 4IOC CRYSTAL STRUCTURE OF COMPOUND 4F BOUND TO LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 3-06-13 S.HAN,E.S.MARR RIBOSOME-RIBOSOME INHIBITOR COMPLEX 3.60 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3GTJ BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER RNA X-RAY DIFFRACTION 6-09-09 D.WANG,D.A.BUSHNELL,X.HUANG,K.D.WESTOVER,M.LEVITT, R.D.KORNBERG TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRID, DNA-DIRECTED RNA POLYMERASE, DNA BINDING, ISOPEPTIDE BOND, MAGNESIUM, METAL BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR 3.42 synthetic 1F85 SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIIE SOLUTION NMR 11-17-00 P.J.LUKAVSKY,G.A.OTTO,A.M.LANCASTER,P.SARNOW,J.D.PUGLISI RIBONUCLEIC ACID, HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE, HAIRPIN LOOP, TETRALOOP, RNA STRUCTURE synthetic 3BT7 STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE TRMA IN COMPLEX WITH 19 NUCLEOTIDE T-ARM ANALOGUE X-RAY DIFFRACTION 4-29-08 A.ALIAN,R.M.STROUD,J.FINER-MOORE METHYLURIDINE, METHYLTRANSFERASE, TRMA, RUMT, S-ADENOSYL-L- METHIONINE, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX 2.43 synthetic 4AFY CRYSTAL STRUCTURE OF THE FIMX EAL DOMAIN IN COMPLEX WITH REACTION PRODUCT PGPG X-RAY DIFFRACTION 1-09-13 J.ROBERT-PAGANIN,S.NONIN-LECOMTE,S.RETY HYDROLASE, CDIGMP BIOFILM, PHOSPHODIESTERASE 2.01 synthetic 2ZH7 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDG X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 3.00 ARCHAEOGLOBUS FULGIDUS 2ES5 STRUCTURE OF THE SRE RNA SOLUTION NMR 1-24-06 F.H.T.ALLAIN RNA STRUCTURE, STEM-LOOP, PENTALOOP synthetic 1O9M THE COMPLEX OF A NOVEL ANTIBIOTIC WITH THE AMINOACYL SITE OF THE BACTERIAL RIBOSOME REVEALED BY X-RAY CRYSTALLOGRAPHY. X-RAY DIFFRACTION 3-27-03 R.RUSSELL,J.B.MURRAY ANTIBIOTIC/RNA, RNA-ANTIBIOTIC INTERACTIONS, A-SITE 2.4 ESCHERICHIA COLI 1OSU STRUCTURE OF THE RNA HEXAMER, R(UUCGCG), WITH A 5'-UU- OVERHANG EXHIBITING HOOGSTEEN-LIKE TRANS U-U BASE PAIRS X-RAY DIFFRACTION 4-04-96 M.C.WAHL,S.T.RAO,M.SUNDARALINGAM A-RNA, DOUBLE HELIX, NICKED, 5'-UU-OVERHANG, MISMATCHED 1.40 synthetic 3HM9 CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE COMPLEXED WITH DNA GUIDE STRAND AND 19-NT RNA TARGET STRAND X-RAY DIFFRACTION 10-06-09 Y.WANG,H.LI,G.SHENG,D.J.PATEL ARGONAUTE, PROTEIN-DNA-RNA COMPLEX, PLASMID, NUCLEIC ACID BINDING PROTEIN/DNA/RNA COMPLEX 3.30 synthetic 4KDB S RIBOSOME TRANSLOCATION INTERMEDIATE FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT A CAN BE FOUND IN 4KDA. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KD8 (30S) AND 4KD9 (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1DI2 CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS X-RAY DIFFRACTION 12-02-99 J.M.RYTER,S.C.SCHULTZ PROTEIN-RNA COMPLEX, DOUBLE STRANDED RNA, PROTEIN-RNA INTERACTIONS, RNA-BINING PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX 1.90 synthetic 2XB2 CRYSTAL STRUCTURE OF THE CORE MAGO-Y14-EIF4AIII-BARENTSZ- UPF3B ASSEMBLY SHOWS HOW THE EJC IS BRIDGED TO THE NMD MACHINERY X-RAY DIFFRACTION 5-12-10 G.BUCHWALD,J.EBERT,C.BASQUIN,J.SAULIERE,U.JAYACHANDRAN, F.BONO,H.LE HIR,E.CONTI EXON JUNCTION COMPLEX, NONSENSE-MEDIATED MRNA DECAY, TRANSLATION, UPF3B, HYDROLASE 3.40 HOMO SAPIENS 1I4C THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA SOLUTION NMR 4-21-01 I.TINOCO JR.,C.-H.KIM NMR, RNA, STEM-LOOP, TRILOOP, REPLICATION, BMV, VIRUS synthetic 1QZA COORDINATES OF THE A/T SITE TRNA MODEL FITTED INTO THE CRYO- EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME ELECTRON MICROSCOPY 11-04-03 M.VALLE,A.ZAVIALOV,W.LI,S.M.STAGG,J.SENGUPTA,R.C.NIELSEN, P.NISSEN,S.C.HARVEY,M.EHRENBERG,J.FRANK TRNA MODEL, DECODING, A/T-SITE TRNA. 10.00 synthetic 409D CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOBBLES X-RAY DIFFRACTION 1-13-99 B.PAN,S.N.MITRA,L.SUN,D.HART,M.SUNDARALINGAM DOUBLE HELIX, I.U WOBBLES, RNA 2.50 synthetic 3KLV M296I G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA X-RAY DIFFRACTION 7-07-10 C.FERRER-ORTA,M.SIERRA,R.AGUDO,R.PEREZ-LUQUE,A.ARIAS,N.VERDAGUER FMDV, RNA DEPENDENT RNA POLYMERASE, RTP, TRANSFERASE-RNA COMPLEX 2.60 synthetic,synthetic 1VC6 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRODUCT WITH C75U MUTAION, CLEAVED IN IMIDAZOLE AND MG2+ SOLUTIONS X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 2.80 synthetic 3BBX THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX ELECTRON MICROSCOPY 10-21-08 L.JIANG,J.P.ABRAHAMS RIBOSOMAL COMPLEX, LARGE SUBUNIT, 50S RESCUE STALLED RIBOSOME, RIBOSOME 10.00 ESCHERICHIA COLI,ESCHERICHIA COLI 404D CRYSTAL STRUCTURE OF THE RNA/DNA HYBRID R(GAAGAGAAGC). D(GCTTCTCTTC) X-RAY DIFFRACTION 12-14-98 G.LEONARD G.CONN,T.BROWN RNA/DNA HYBRID R(GAAGAGAAGC).D(GCTTCTCTTC), DNA/RNA COMPLEX, DNA-RNA HYBRID 2.50 synthetic 1JTJ SOLUTION STRUCTURE OF HIV-1LAI MUTATED SL1 HAIRPIN SOLUTION NMR 12-11-02 F.KIEKEN,E.ARNOULT,F.BARBAULT,F.PAQUET,T.HUYNH-DINH, J.PAOLETTI,D.GENEST,G.LANCELOT HIV, SL1, HAIRPIN, RNA, HIV-1LAI synthetic 3DIZ CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE IN THE ABSENCE OF MG2+ X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 2.85 synthetic 3FTE CRYSTAL STRUCTURE OF A. AEOLICUS KSGA IN COMPLEX WITH RNA X-RAY DIFFRACTION 3-24-09 C.TU,X.JI KSGA, ROSSMANN-LIKE FOLD, RNA METHYLTRANSFERASE, MTASE, RNA, ANTIBIOTIC RESISTANCE, METHYLTRANSFERASE, RNA-BINDING, RRNA PROCESSING, S-ADENOSYL-L-METHIONINE, TRANSFERASE, TRANSFERASE/RNA COMPLEX 3.00 synthetic 2GV3 TRANSLOCATION OF A TRNA WITH AN EXTENDED ANTICODON THROUGH THE RIBOSOME SOLUTION NMR 8-08-06 S.S.PHELPS,C.GAUDIN,S.YOSHIZAWA,C.BENITEZ,D.FOURMY,S.JOSEPH STEMLOOP, RNA synthetic 2XPJ CRYSTAL STRUCTURE OF PHYSALIS MOTTLE VIRUS WITH INTACT ORDERED RNA X-RAY DIFFRACTION 9-15-10 S.R.SAGURTHI,V.RAJARAM,H.S.SAVITHRI,M.R.N.MURTHY VIRUS, PLANT RNA VIRUS 3.40 synthetic 4B8T RNA BINDING PROTEIN SOLUTION STRUCTURE OF THE THIRD KH DOMAIN OF KSRP IN COMPLEX WITH THE G-RICH TARGET SEQUENCE. SOLUTION NMR 11-07-12 G.NICASTRO,M.F.GARCIA-MAYORAL,D.HOLLINGWORTH,G.KELLY,S.R.MARTIN, P.BRIATA,R.GHERZI,A.RAMOS PROTEIN-RNA COMPLEX SYNTHETIC CONSTRUCT 3CUL AMINOACYL-TRNA SYNTHETASE RIBOZYME X-RAY DIFFRACTION 6-24-08 H.XIAO,H.MURAKAMI,H.SUGA,A.R.FERRE-D'AMARE CATALYTIC RNA RIBOZYME ARS, RNA/RNA BINDING COMPLEX 2.80 engineered,HOMO SAPIENS 3OFR CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO ERYTHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME WITH ERTHROMYCIN BOUND. X-RAY DIFFRACTION 10-13-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, RIBOSOME 3.10 ESCHERICHIA COLI,ESCHERICHIA COLI 1Q93 CRYSTAL STRUCTURE OF A MUTANT OF THE SARCIN/RICIN DOMAIN FROM RAT 28S RRNA X-RAY DIFFRACTION 11-25-03 C.C.CORRELL,J.BENEKEN,M.J.PLANTINGA,M.LUBBERS,Y.L.CHAN SARCIN/RICIN DOMAIN, RIBONUCLEIC ACID, RNA RECOGNITION, RIBOSOMES, ELONGATION FACTORS, MUTANT, STEM-LOOP 2.25 synthetic 3Q0Q CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO2 IN COMPLEX WITH P38ALPHA NREA X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.00 synthetic 3J44 STRUCTURE OF THE METHANOCOCCUS JANNASCHII RIBOSOME-SECYEBETA CHANNEL COMPLEX (50S RIBOSOMAL SUBUNIT) ELECTRON MICROSCOPY 10-23-13 J.F.MENETRET,E.PARK,J.C.GUMBART,S.J.LUDTKE,W.LI,A.WHYNOT, T.A.RAPOPORT,C.W.AKEY ARCHAEA, ARCHAEAL, RIBOSOMAL, 50S, PROTEIN SYNTHESIS, RNA, LARGE SUBUNIT, CO-TRANSLATIONAL TRANSLOCATION, PROTEIN CONDUCTING CHANNEL, RIBOSOME-PROTEIN TRANSPORT COMPLEX 9.00 METHANOCOCCUS JANNASCHII,METHANOCOCCUS JANNASCHII 3FOZ STRUCTURE OF E. COLI ISOPENTENYL-TRNA TRANSFERASE IN COMPLEX WITH E. COLI TRNA(PHE) X-RAY DIFFRACTION 1-20-09 E.SEIF,B.M.HALLBERG TRNA, NUCLEOSIDE MODIFICATION, ISOPENTENYL-TRNA TRANSFERASE, MIAA, TRANSFERASE/RNA COMPLEX 2.50 synthetic,synthetic 3EPJ CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM X-RAY DIFFRACTION 11-04-08 R.H.HUANG,C.ZHOU TRANSFERASE, ALTERNATIVE INITIATION, ATP-BINDING, CYTOPLASM, MITOCHONDRION, NUCLEOTIDE-BINDING, NUCLEUS, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX 3.10 synthetic 2V46 STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 1. X-RAY DIFFRACTION 7-31-07 A.WEIXLBAUMER,S.PETRY,C.M.DUNHAM,M.SELMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRNA-BINDING, RRNA-BINDING, METAL-BINDING, RRF, TRNA, ZINC, MRNA, RIBOSOME, RECYCLING, PROTEIN BIOSYNTHESIS, RNA-BINDING, ZINC-FINGER, TRANSLATION, COILED COIL 3.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic 2AU4 CLASS I GTP APTAMER SOLUTION NMR 3-28-06 J.M.CAROTHERS,J.H.DAVIS,J.J.CHOU,J.W.SZOSTAK RNA, APTAMER synthetic 4JI0 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING 3.49 THERMUS THERMOPHILUS 3CJZ EFFECTS OF N2,N2-DIMETHYLGUANOSINE ON RNA STRUCTURE AND STABILITY: CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH TANDEM M22G:A PAIRS X-RAY DIFFRACTION 10-14-08 P.S.PALLAN,C.KREUTZ,S.BOSIO,R.MICURA,M.EGLI RNA, N2, N2-DIMETHYL GUANOSINE, X-RAY CRYSTAL STRUCTURE, M22G:A PAIR, RRNA, TRNA 1.80 synthetic 4IFD CRYSTAL STRUCTURE OF AN 11-SUBUNIT EUKARYOTIC EXOSOME COMPLEX BOUND TO RNA X-RAY DIFFRACTION 2-06-13 D.L.MAKINO,E.CONTI EXOSOME, RNA, RRP44, DIS3, PIN, RRP6, EXONUCLEASE, ENDONUCLEASE, HYDROLASE, NUCLEASE, RIBONUCLEASE, RNA PROCESSING, HYDROLASE-RNA COMPLEX 2.81 synthetic 483D CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA X-RAY DIFFRACTION 10-08-99 C.C.CORRELL,I.G.WOOL,A.MUNISHKIN SACIN/RICIN DOMAIN RNA RECOGNITION RIBOSOMES ELONGATION FACTORS CRYSTAL STRUCTURE 1.11 synthetic 3WC2 CRYSTAL STRUCTURE OF C. ALBICANS TRNA(HIS) GUANYLYLTRANSFERASE (THG1) WITH A TRNA(PHE)(GUG) X-RAY DIFFRACTION 12-18-13 A.NAKAMURA,T.NEMOTO,T.SONODA,K.YAMASHITA,I.TANAKA,M.YAO TRANSFERASE-RNA COMPLEX 3.64 synthetic 2WRN THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA (PART 1 OF 4). X-RAY DIFFRACTION 10-20-09 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, TRANSLATION, ZINC-FINGER, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ELONGATION FACTOR, TRNA, EF-TU, GTPASE, RIBOSOME, DECODING 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 1ATW HAIRPIN WITH AGAU TETRALOOP, NMR, 3 STRUCTURES SOLUTION NMR 2-25-98 H.KANG RIBONUCLEIC ACID, RNA, HAIRPIN synthetic 2LX1 MAJOR CONFORMATION OF THE INTERNAL LOOP 5'GAGU/3'UGAG SOLUTION NMR 11-21-12 S.D.KENNEDY,D.H.TURNER RNA, LOOP, SWITCH, STACKED ADENINES, INVERTED SUGARS synthetic 1YYW CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.8-ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-22-05 J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI RIBONUCLEASE III, DOUBLE-STRANDED RNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 2.80 synthetic 1SAQ CRYSTAL STRUCTURE OF THE RNA OCTAMER GIC(GA)GCC X-RAY DIFFRACTION 5-18-04 S.B.JANG,K.BAEYENS,M.S.JEONG,J.SANTALUCIA JR,D.TURNER, S.R.HOLBROOK RNA DOUBLE HELIX, RNA TANDEM G-A BASE PAIR 2.70 synthetic 3OAQ CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO TELITHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 12-15-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, TELITHROMYCIN, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX 3.25 ESCHERICHIA COLI 3MJA CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SELENATE, STRUCTURE #2 X-RAY DIFFRACTION 5-19-10 J.S.KIEFT,B.L.GOLDEN,D.A.COSTANTINO,E.CHASE RNA PSUEDOKNOT, ANIONS, SELENATE, RNA 2.80 synthetic,synthetic 4K0P CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 70S CONTAINING TRNAS AND MRNA STOP CODON WITH PSEUDOURIDINE X-RAY DIFFRACTION 7-03-13 I.S.FERNANDEZ,C.L.NG,A.C.KELLEY,W.GUOWEI,Y.T.YU,V.RAMAKRISHNAN RIBOSOMAL SUBUNIT, TRANSLATION, RIBOSOME 3.30 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,SYNTHETIC CONSTRUCT 2L9E SOLUTION STRUCTURE OF THE HUMAN ANTI-CODON STEM AND LOOP(HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) SOLUTION NMR 3-02-11 F.A.P.VENDEIX,F.V.MURPHY IV,W.CANTARA,G.LESZCZYNSKA,E.M.GUSTILO, B.SPROAT,A.A.P.MALKIEWICZ,P.F.AGRIS RNA synthetic 1PBM STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE SOLUTION NMR 7-07-97 M.POPENDA,E.BIALA,J.MILECKI,R.W.ADAMIAK RIBONUCLEIC ACID, RNA DUPLEX synthetic 1NZ1 SOLUTION STRUCTURE OF THE S. CEREVISIAE U6 INTRAMOLECULAR STEM-LOOP CONTAINING AN SP PHOSPHOROTHIOATE AT NUCLEOTIDE U80 SOLUTION NMR 5-13-03 N.J.REITER,L.J.NIKSTAD,A.M.ALLMAN,R.J.JOHNSON,S.E.BUTCHER U6 RNA, STEM-LOOP, PHOSPHOROTHIOATE, SP PHOSPHOROTHIOATE, RESIDUAL DIPOLAR COUPLING, RDC synthetic 3SQW STRUCTURE OF MSS116P (NTE DELETION) BOUND TO SSRNA AND AMP-PNP X-RAY DIFFRACTION 10-12-11 M.DEL CAMPO,A.M.LAMBOWITZ RECA FOLD, RNA DEPENDENT ATPASE, RNA HELICASE, MITOCHONDRION, HYDROLASE-RNA COMPLEX 1.91 synthetic 1XPR STRUCTURAL MECHANISM OF INHIBITION OF THE RHO TRANSCRIPTION TERMINATION FACTOR BY THE ANTIBIOTIC 5A-FORMYLBICYCLOMYCIN (FB) X-RAY DIFFRACTION 11-02-04 E.SKORDALAKES,A.P.BROGAN,B.S.PARK,H.KOHN,J.M.BERGER RHO; 5A-FORMYLBICYCLOMYCIN; FB; ATPGAMMAS, TRANSCRIPTION/RNA COMPLEX 3.15 synthetic 2LBQ NMR STRUCTURE OF I6A37_TYRASL SOLUTION NMR 8-03-11 A.P.DENMON,J.WANG,E.P.NIKONOWICZ TYROSYL-TRNA, RNA BACILLUS SUBTILIS 4M7A CRYSTAL STRUCTURE OF SPLICEOSOMAL U6 SNRNP CORE DOMAIN COMPLEX X-RAY DIFFRACTION 11-13-13 L.ZHOU,J.HANG,Y.ZHOU,R.WAN,G.LU,C.YAN,Y.SHI SM LIKE PROTEIN, RNA SPLICING, STRUCTURAL PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN 2.78 synthetic 3TVE CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 N.DEMESHKINA,L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1U6P NMR STRUCTURE OF THE MLV ENCAPSIDATION SIGNAL BOUND TO THE NUCLEOCAPSID PROTEIN SOLUTION NMR 11-02-04 V.D'SOUZA,M.F.SUMMERS MLV, A-MINOR K-TURN, STEM LOOP, BULGE, G-U MISMATCH, G-A MISMATCH, U-U MISMATCH, A-C MISMATCH, ZINC FINGER, NC, VIRAL PROTEIN/RNA COMPLEX MOLONEY MURINE LEUKEMIA VIRUS 1AM0 AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES SOLUTION NMR 7-23-97 F.JIANG,R.A.KUMAR,R.A.JONES,D.J.PATEL COMPLEX (RIBONUCLEIC ACID/AMP), RNA APTAMER, GNRA MOTIF, G(DOT)G MISMATCH, G(DOT)A MISMATCH, RIBONUCLEIC ACID synthetic 3HK2 CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE N478 MUTANT PROTEIN COMPLEXED WITH DNA GUIDE STRAND AND 19-NT RNA TARGET STRAND X-RAY DIFFRACTION 10-06-09 Y.WANG,H.LI,G.SHENG,D.J.PATEL ARGONAUTE, PROTEIN-DNA-RNA COMPLEX, PLASMID, NUCLEIC ACID BINDING PROTEIN/DNA/RNA COMPLEX 2.80 synthetic 2OE8 .8 A X-RAY CRYSTAL STRUCTURE OF APRAMYCIN COMPLEX WITH RNA FRAGMENT GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC CONTAINING THE HUMAN RIBOSOMAL DECODING A SITE: RNA CONSTRUCT WITH 5'- OVERHANG X-RAY DIFFRACTION 2-13-07 T.HERMANN,V.TERESHKO,E.SKRIPKIN,D.J.PATEL AMINOGLYCOSIDE ANTIBIOTICS, APRAMYCIN, RIBOSOMAL DECODING SITE, A SITE, HOMO SAPIENS, RNA DUPLEX 1.80 synthetic,synthetic 4BXX ARRESTED RNA POLYMERASE II-BYE1 COMPLEX X-RAY DIFFRACTION 9-11-13 K.KINKELIN,G.G.WOZNIAK,S.B.ROTHBART,M.LIDSCHREIBER,B.D.STRAHL, P.CRAMER TRANSFERASE, TRANSCRIPTION 3.28 SYNTHETIC CONSTRUCT 4GG4 CRYSTAL STRUCTURE OF THE TAL EFFECTOR DHAX3 BOUND TO SPECIFIC DNA-RNA HYBRID X-RAY DIFFRACTION 10-03-12 P.YIN,D.DENG,C.Y.YAN,X.J.PAN,N.YAN,Y.G.SHI TANDEM REPEAT, TAL EFFECTOR, SEQUENCE SPECIFIC DNA BINDING PROTEIN, DNA DUPLEX, DNA-RNA HYBRID, DNA BINDING PROTEIN-DNA-RNA COMPLEX 2.50 synthetic 3O7V CRYSTAL STRUCTURE OF HUMAN HIWI1 (V361M) PAZ DOMAIN (RESIDUES 277-399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OCH3 AT ITS 3'-END X-RAY DIFFRACTION 1-12-11 Y.TIAN,D.K.SIMANSHU,J.-B.MA,D.J.PATEL PIWI, RNA SILENCING, PI-RNA, HIWI1, HILI, PAZ DOMAIN, RNA BINDING PROTEIN, RNA BINDING PROTEIN-RNA COMPLEX 2.10 synthetic 1N1H INITIATION COMPLEX OF POLYMERASE LAMBDA3 FROM REOVIRUS X-RAY DIFFRACTION 12-25-02 Y.TAO,D.L.FARSETTA,M.L.NIBERT,S.C.HARRISON POLYMERASE, INITIATION COMPLEX, RIGHT HAND CONFIGURATION, TRANSFERASE/RNA COMPLEX 2.80 synthetic 3OL9 POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH 3'-DEOXY-CTP X-RAY DIFFRACTION 12-22-10 P.GONG,O.B.PEERSEN RNA-DEPENDENT RNA POLYMERASE, ELONGATION COMPLEX, VIRUS, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.25 synthetic,synthetic,synthetic 1Z7F CRYSTAL STRUCTURE OF 16 BASE PAIR RNA DUPLEX CONTAINING A C- A MISMATCH X-RAY DIFFRACTION 10-18-05 C.M.GHERGHE,J.M.KRAHN,K.M.WEEKS RNA, DUPLEX, MISMATCH 2.10 synthetic 3OHD STRUCTURE OF THE THERMUS THERMOPHILUS RIBOSOME COMPLEXED WITH ERYTHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, ERYTHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS 3J5W STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE PRE- TRANSLOCATION STATE (PRE-TRANSLOCATION 70S*TRNA*EF-G STRUCTURE, 50S SUBUNIT) ELECTRON MICROSCOPY 12-18-13 A.F.BRILOT,A.A.KOROSTELEV,D.N.ERMOLENKO,N.GRIGORIEFF TRANSLATION, EF-G, SINGLE PARTICLE ANALYSIS, PRE-TRANSLOCATION TRANSLATION COMPLEX, VIOMYCIN 7.60 ESCHERICHIA COLI,ESCHERICHIA COLI 2YHP STRUCTURE OF RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN, P1 CRYSTAL FORM X-RAY DIFFRACTION 1-25-12 K.EL OMARI,B.DHALIWAL,J.REN,N.G.A.ABRESCIA,M.LOCKYER,K.L.POWELL, A.R.HAWKINS,D.K.STAMMERS VIRAL PROTEIN-RNA COMPLEX 3.60 ESCHERICHIA COLI 3JXQ X-RAY STRUCTURE OF R[CGCG(5-FLUORO)CG]2 X-RAY DIFFRACTION 2-09-10 D.A.ADAMIAK,J.MILECKI,R.W.ADAMIAK,W.RYPNIEWSKI RNA, DOUBLE HELIX 1.45 synthetic 3QSY RECOGNITION OF THE METHIONYLATED INITIATOR TRNA BY THE TRANSLATION INITIATION FACTOR 2 IN ARCHAEA X-RAY DIFFRACTION 3-21-12 O.S.NIKONOV,E.A.STOLBOUSHKINA,N.V.ZELINSKAYA,A.D.NIKULIN,M.B.GARBER, S.V.NIKONOV TRANSLATION INITIATION, ARCHAEA, E/AIF2, TRNAI, G-PROTEIN, GTP BINDING, MET-TRNAI BINDING, RIBOSOME BINDING, MRNA BINDING, RIBOSOME, TRANSLATION-RNA COMPLEX 3.20 ESCHERICHIA COLI 2XSY TRNA TRANLOCATION ON THE 70S RIBOSOME: THE PRE- TRANSLOCATIONAL TRANSLOCATION INTERMEDIATE TI(PRE) ELECTRON MICROSCOPY 12-08-10 A.H.RATJE,J.LOERKE,A.MIKOLAJKA,M.BRUENNER,P.W.HILDEBRAND, A.L.STAROSTA,A.DOENHOEFER,S.R.CONNELL,P.FUCINI,T.MIELKE, P.C.WHITFORD,J.ONUCHIC,Y.YU,K.Y.SANBONMATSU,R.K.HARTMANN, P.A.PENCZEK,D.N.WILSON,C.M.T.SPAHN RIBOSOME, TRANSLATION, ELONGATION CYCLE 7.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2CKY STRUCTURE OF THE ARABIDOPSIS THALIANA THIAMINE PYROPHOSPHATE RIBOSWITCH WITH ITS REGULATORY LIGAND X-RAY DIFFRACTION 5-08-06 S.THORE,M.LEIBUNDGUT,N.BAN NUCLEIC ACID 2.9 ARABIDOPSIS THALIANA 4JF2 STRUCTURE OF A CLASS II PREQ1 RIBOSWITCH REVEALS LIGAND RECOGNITION BY A NEW FOLD X-RAY DIFFRACTION 4-17-13 J.A.LIBERMAN,J.E.WEDEKIND RIBOSWITCH, H-TYPE PSEUDOKNOT, RNA 2.28 LACTOBACILLUS RHAMNOSUS 2EEW GUANINE RIBOSWITCH U47C MUTANT BOUND TO HYPOXANTHINE X-RAY DIFFRACTION 11-13-07 S.D.GILBERT,C.E.LOVE,R.T.BATEY RIBOSWITCH, MRNA, RNA-LIGAND COMPLEX, THREE-WAY JUNCTION, HYPOXANTHINE, GUANINE, BASE TRIPLE 2.25 synthetic 3P6Y CF IM25-CF IM68-UGUAA COMPLEX X-RAY DIFFRACTION 11-03-10 H.LI,S.TONG,X.LI,H.SHI,Y.GAO,H.GE,L.NIU,M.TENG RRM DOMAIN, RNA BINDING, NUCLEAR, RNA BINDING PROTEIN-RNA COMPLEX 2.90 synthetic 2JLY DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP- PHOSPHATE X-RAY DIFFRACTION 11-25-08 D.H.LUO,T.XU,R.P.WATSON,D.S.BECKER,A.SAMPATH,W.JAHNKE, S.S.YEONG,C.H.WANG,S.P.LIM,S.G.VASUDEVAN,J.LESCAR HYDROLASE/RNA, ENVELOPE PROTEIN, RIBONUCLEOPROTEIN, CAPSID PROTEIN, RNA REPLICATION, SERINE PROTEASE, GLYCOPROTEIN, DENGUE VIRUS, METAL-BINDING, TRANSFERASE, ATP-BINDING, RNA-BINDING, FLAVIVIRUSES, TRANSCRIPTION REGULATION, RNA-DIRECTED RNA POLYMERASE, NUCLEOTIDE-BINDING, VIRAL NUCLEOPROTEIN, SECRETED, HELICASE, PROTEASE, HYDROLASE, PHOSPHATE, CLEAVAGE ON PAIR OF BASIC RESIDUES, ENDOPLASMIC RETICULUM, NUCLEOTIDYLTRANSFERASE, ADP, SSRNA, VIRION, ATPASE, NUCLEUS, MEMBRANE, TRANSMEMBRANE, TRANSCRIPTION, PHOSPHOPROTEIN, NS3 HELICASE STRUCTURE, MULTIFUNCTIONAL ENZYME 2.4 synthetic 4JVY STRUCTURE OF THE STAR (SIGNAL TRANSDUCTION AND ACTIVATION OF RNA) DOMAIN OF GLD-1 BOUND TO RNA X-RAY DIFFRACTION 5-08-13 M.TEPLOVA,M.HAFNER,D.TEPLOV,K.ESSIG,T.TUSCHL,D.J.PATEL KH DOMAIN, STAR DOMAIN, RNA REGULATION, TRANSLATIONAL REPRESSION. RNA BINDING PROTEIN, RNA BINDING PROTEIN 2.85 synthetic 1J5A STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA X-RAY DIFFRACTION 3-08-02 F.SCHLUENZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ, R.ALBRECHT,A.YONATH,F.FRANCESCHI RIBOSOME, 50S, 23S, 5S, ANTIBIOTICS, CLARITHROMYCIN, PEPTIDYL TRANSFERASE CENTER 3.50 DEINOCOCCUS RADIODURANS 3BSU HYBRID-BINDING DOMAIN OF HUMAN RNASE H1 IN COMPLEX WITH 12- MER RNA/DNA X-RAY DIFFRACTION 3-25-08 M.NOWOTNY,S.M.CERRITELLI,R.GHIRLANDO,S.A.GAIDAMAKOV, R.J.CROUCH,W.YANG RNASE H, RNA/DNA HYBRID, DSRNA, HYDROLASE/RNA/DNA COMPLEX 2.10 HOMO SAPIENS 2M23 NMR SOLUTION STRUCTURE OF THE D3'-HAIRPIN OF THE GROUP II INTRON SC.AI5GAMMA INCLUDING EBS1 BOUND TO IBS1 SOLUTION NMR 12-18-13 D.KRUSCHEL,M.SKILANDAT,R.K.O.SIGEL GROUP II INTRON, RIBOZYME, HAIRPIN, EBS1, IBS1, SPLICING, 5'-SPLICE SITE, RNA SACCHAROMYCES CEREVISIAE,synthetic 4M4O CRYSTAL STRUCTURE OF THE APTAMER MINE-LYSOZYME COMPLEX X-RAY DIFFRACTION 12-18-13 V.N.MALASHKEVICH,F.C.PADLAN,R.TORO,M.GIRVIN,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, PROTEIN- RNA COMPLEX, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, HYDROLASE-RNA COMPLEX 2.00 synthetic 1I95 CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE X-RAY DIFFRACTION 4-12-01 M.PIOLETTI,F.SCHLUENZEN,J.HARMS,R.ZARIVACH,M.GLUEHMANN, H.AVILA,H.BARTELS,C.JACOBI,T.HARTSCH,A.YONATH,F.FRANCESCHI S RIBOSOME, ANTIBIOTICS, EDEINE 4.50 THERMUS THERMOPHILUS 3IZ4 MODIFIED E. COLI TMRNA IN THE RESUME STATE WITH THE TRNA-LIKE DOMAIN IN THE RIBOSOMAL P SITE INTERACTING WITH THE SMPB ELECTRON MICROSCOPY 10-20-10 Y.HASHEM,J.FU,J.FRANK TRANSFER-MESSENGER RNA, TRANS-TRANSLATION, RNA, MOLECULAR MIMICRY, PSEUDO-KNOTS, TRNA-LIKE DOMAIN, MRNA-LIKE DOMAIN, MS2, RNA BINDING PROTEIN-RNA COMPLEX 13.60 ESCHERICHIA COLI 4K4U POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R5_FORM) X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.85 synthetic,synthetic,synthetic 3IZZ MODELS FOR RIBOSOME COMPONENTS THAT ARE NEAREST NEIGHBORS TO THE BOVINE MITOCHONDRIAL INITIATION FACTOR2 BOUND TO THE E. COLI RIBOSOME ELECTRON MICROSCOPY 3-30-11 A.S.YASSIN,E.HAQUE,P.P.DATTA,K.ELMORE,N.K.BANAVALI,L.L.SPREMULLI, R.K.AGRAWAL S, RNA, RIBOSOMAL PROTEIN 10.80 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3GS5 AN ALL-RNA HAIRPIN RIBOZYME A38N1DA VARIANT WITH A PRODUCT MIMIC SUBSTRATE STRAND X-RAY DIFFRACTION 4-21-09 R.C.SPITALE,R.VOLPINI,M.G.HELLER,J.KRUCINSKA,G.CRISTALLI, J.E.WEDEKIND HAIRPIN RIBOZYME, RNA RIBOZYME, N1-DEAZAADENOSINE 2.75 synthetic,synthetic 2GIO SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA OF BRADYRHIZOBIUM JAPONICUM SOLUTION NMR 6-20-06 S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS G-G NON CANNONICAL PAIR, RNA synthetic 1T4X THE FIRST LEFT-HANDED RNA STRUCTURE OF (CGCGCG)2, Z-RNA, NMR, 12 STRUCTURES, DETERMINED IN HIGH SALT SOLUTION NMR 8-03-04 M.POPENDA,J.MILECKI,R.W.ADAMIAK LEFT-HANDED RNA DUPLEX, Z-RNA synthetic 4II9 CRYSTAL STRUCTURE OF WEISSELLA VIRIDESCENS FEMXVV NON-RIBOSOMAL AMINO ACID TRANSFERASE IN COMPLEX WITH A PEPTIDYL-RNA CONJUGATE X-RAY DIFFRACTION 7-03-13 I.LI DE LA SIERRA-GALLAY,M.FONVIELLE,H.VAN TILBEURGH,M.ARTHUR, M.ETHEVE-QUELQUEJEU FEMX, PEPTIDOGLYCAN, TRANSFERASE, PEPTIDYL-RNA CONJUGATE COMPLEX, TRANSFERASE-PEPTIDE-RNA COMPLEX 1.66 synthetic 4G5V CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TIGECYCLINE. THIS ENTRY CONTAINS THE 30S SUBUNIT OF MOLECULE B. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,SYNTHETIC CONSTRUCT 3SD3 THE STRUCTURE OF THE TETRAHYDROFOLATE RIBOSWITCH CONTAINING A U25C MUTATION X-RAY DIFFRACTION 9-21-11 F.E.REYES,J.J.TRAUSCH,P.CERES,R.T.BATEY TETRAHYDROFOLATE RNA RIBOSWITCH, RNA 1.95 synthetic 3ICE RHO TRANSCRIPTION TERMINATION FACTOR BOUND TO RNA AND ADP- BEF3 X-RAY DIFFRACTION 11-10-09 N.D.THOMSEN,J.M.BERGER TRANSCRIPTION, ATPASE, HEXAMER, HELICASE, RNA, RECA, OB FOLD, MOTOR, ATP-BINDING, HYDROLASE, NUCLEOTIDE-BINDING, RNA-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSCRIPTION REGULATOR/RNA COMPLEX 2.80 synthetic 2LQZ STRUCTURE OF THE RNA CLAW OF THE DNA PACKAGING MOTOR OF BACTERIOPHAGE 29 SOLUTION NMR 8-01-12 E.J.HARJES,H.J.MATSUO,A.J.KITAMURA RNA, BULGE synthetic 1FUF CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE X-RAY DIFFRACTION 11-09-01 J.DENG,Y.XIONG,C.SUDARSANAKUMAR,K.SHI,M.SUNDARALINGAM BULGE, BASE TRIPLE, RNA, CRYSTAL 1.70 synthetic 1XPU STRUCTURAL MECHANISM OF INHIBITION OF THE RHO TRANSCRIPTION TERMINATION FACTOR BY THE ANTIBIOTIC 5A-(3- FORMYLPHENYLSULFANYL)-DIHYDROBICYCLOMYCIN (FPDB) X-RAY DIFFRACTION 11-02-04 E.SKORDALAKES,A.P.BROGAN,B.S.PARK,H.KOHN,J.M.BERGER RHO TRANSCRIPTION TERMINATION FACTOR; 5A-(3- FORMYLPHENYLSULFANYL)-DIHYDROBICYCLOMYCIN (FPDB); ATPGAMMAS, TRANSCRIPTION/RNA COMPLEX 3.05 synthetic 3P4B ALTERNATINGLY MODIFIED 2'FLUORO RNA OCTAMER F/RA2U2-P3 X-RAY DIFFRACTION 1-05-11 P.S.PALLAN,E.M.GREENE,P.A.JICMAN,R.K.PANDEY,M.MANOHARAN,E.ROZNERS, M.EGLI RNA, 2'-FLUORO-RNA, O2'-MODIFICATION, OCTAMER, 2'-FLUORO 2'- DEOXYCYTIDINE, 2'-FLUORO 2'-DEOXYADENOSINE, 2'-FLUORO 2'- DEOXYURIDINE, SIRNA 1.45 synthetic 2LPA MUTANT OF THE SUB-GENOMIC PROMOTER FROM BROME MOSAIC VIRUS SOLUTION NMR 5-16-12 J.SKOV PSEUDO-TRILOOP, RNA REPLICATION, RNA synthetic 4ED5 CRYSTAL STRUCTURE OF THE TWO N-TERMINAL RRM DOMAINS OF HUR COMPLEXED WITH RNA X-RAY DIFFRACTION 5-23-12 H.WANG,F.ZENG,Q.LIU,L.NIU,M.TENG,X.LI RRM, RNA BINDING, NUCLEUS, RNA BINDING PROTEIN-RNA COMPLEX 2.00 synthetic 3Q0R CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO2 IN COMPLEX WITH P38ALPHA NREB X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.00 synthetic 1R2P SOLUTION STRUCTURE OF DOMAIN 5 FROM THE AI5(GAMMA) GROUP II INTRON SOLUTION NMR 2-03-04 R.K.O.SIGEL,D.G.SASHITAL,D.L.ABRAMOVITZ,A.G.PALMER III, S.E.BUTCHER,A.M.PYLE RNA HAIRPIN, TETRALOOP, BULGE, METAL ION, MAGNESIUM synthetic 4KD0 S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-I CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT B. THE 50S SUBUNIT B CAN BE FOUND IN 4KD2. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KCY (30S) AND 4KCZ (50S) X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 2IY5 PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNA AND A PHENYLALANYL-ADENYLATE ANALOG X-RAY DIFFRACTION 9-06-06 N.MOOR,O.KOTIK-KOGAN,D.TWOROWSKI,M.SUKHANOVA,M.SAFRO CLASS II AMINOACYL-TRNA SYNTHETASE, LIGASE, RBD DOMIN, MAGNESIUM, SH3 DOMAIN, PHENYLALANYL-TRNA SYNTHETASE, THERMUS THERMOPHILUS, PROTEIN BIOSYNTHESIS, METAL-BINDING, NUCLEOTIDE-BINDING, RNA-BINDING, ATP-BINDING, TRNA-BINDING, HELIX-TURN-HELIX MOTIF, AMINOACYL-TRNA SYNTHETASE 3.1 THERMUS THERMOPHILUS 3R1D CRYSTAL STRUCTURE OF GC(8BRG)GCGGCGGC DUPLEX X-RAY DIFFRACTION 6-01-11 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI CGG REPEATS, FRAGILE X MENTAL RETARDATION, 8-BROMOGUANOSINE, RNA 1.45 synthetic 2FGP CRYSTAL STRUCTURE OF A MINIMAL, ALL RNA HAIRPIN RIBOZYME WITH MODIFICATIONS (G8DAP, U39C) AT PH 8.6 X-RAY DIFFRACTION 2-14-06 J.D.SALTER,J.E.WEDEKIND RIBOZYME, G8, DIAMINOPURINE, IN-LINE GEOMETRY, MUTANT, RNA 2.40 synthetic,synthetic,synthetic,synthetic 2RP0 REFINED SOLUTION STRUCTURE OF THE PEMV-1 MRNA PSEUDOKNOT, 28 LOWEST ENERGY STRUCTURES SOLUTION NMR 3-31-09 P.V.CORNISH,M.HENNIG,D.P.GIEDROC RNA PSEUDOKNOT, FRAMESHIFTING synthetic 1F7Y THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY X-RAY DIFFRACTION 11-22-00 E.ENNIFAR,A.NIKOULINE,A.SERGANOV,S.TISHCHENKO,N.NEVSKAYA, M.GARBER,B.EHRESMANN,C.EHRESMANN,S.NIKONOV,P.DUMAS UUCG, TETRALOOP, RNA, X-RAY, RIBOSOME 2.80 synthetic 1TFY HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE X-RAY DIFFRACTION 8-10-04 Y.XIONG,T.A.STEITZ CCA-ADDING COMPLEX, CTP, TRANSFERASE/RNA COMPLEX 3.20 synthetic,synthetic,synthetic,synthetic 1J8G X-RAY ANALYSIS OF A RNA TETRAPLEX R(UGGGGU)4 AT ULTRA-HIGH RESOLUTION X-RAY DIFFRACTION 11-23-01 J.DENG,Y.XIONG,M.SUNDARALINGAM RNA TETRAPLEX, X-RAY, ULTRA-HIGH RESOLUTION, SR IONS, U TETRAD, OCTAPLEX 0.61 synthetic 2PXK VARIANT 8 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.00 ESCHERICHIA COLI 2HW8 STRUCTURE OF RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 RESOLUTION. X-RAY DIFFRACTION 12-19-06 S.TISHCHENKO,E.NIKONOVA,A.NIKULIN,N.NEVSKAYA,S.VOLCHKOV, W.PIENDL,M.GARBER,S.NIKONOV RIBOSOMAL PROTEIN L1, MRNA, RNA-PROTEIN COMPLEX, STRUCTURAL PROTEIN/RNA COMPLEX 2.10 synthetic 3CGP X-RAY STRUCTURE OF A PSEUDOURIDINE-CONTAINING YEAST SPLICEOSOMAL U2 SNRNA-INTRON BRANCH SITE DUPLEX BOUND TO IODIDE IONS X-RAY DIFFRACTION 7-01-08 Y.LIN,C.L.KIELKOPF RNA DOUBLE HELIX, BRANCHPOINT SEQUENCE, BPS, U2 SNRNA, PSEUDOURIDINE, PRE-MRNA SPLICING 1.57 synthetic,synthetic 3DJ2 CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE, TL+ SOAK X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV LYSINE, RIBOSWITCH, RNA 2.50 synthetic 2KX8 NMR STRUCTURE OF STEM-LOOP 4 FROM THE HUMAN 7SK SNRNA IN COMPLEX WITH ARGININE SOLUTION NMR 9-08-10 M.A.DURNEY,V.M.D'SOUZA SNRNA, RNA HOMO SAPIENS 1QET TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES SOLUTION NMR 6-05-97 J.A.MCDOWELL,L.HE,X.CHEN,D.H.TURNER RIBONUCLEIC ACID, G:U MISMATCH, RNA synthetic 4DV7 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, A915G, BOUND WITH STREPTOMYCIN X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.29 THERMUS THERMOPHILUS 3MUM CRYSTAL STRUCTURE OF THE G20A MUTANT C-DI-GMP RIBOSWITH BOUND TO C-DI- GMP X-RAY DIFFRACTION 8-25-10 S.A.STROBEL,K.D.SMITH RIBOSWITCH, C-DI-GMP, RNA BINDING PROTEIN-RNA COMPLEX 2.90 synthetic 2K65 NMR SOLUTION STRUCTURE OF THE EXON/INTRON BINDING SITE 1 (EBS1/IBS1) OF THE GROUP II INTRON SC.AI5(GAMMA) SOLUTION NMR 7-14-09 D.KRUSCHEL,R.K.O.SIGEL GROUP II INTRON, RIBOZYME, SPLICING, EXON BINDING SITE 1, EBS1, INTRON BINDING SITE 1, IBS1, NMR, RNA 7-MER, DUPLEX synthetic,synthetic 2O3Y CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE IN PRESENCE OF PAROMAMINE DERIVATIVE NB30 X-RAY DIFFRACTION 11-06-07 J.KONDO,M.HAINRICHSON,I.NUDELMAN,D.SHALLOM-SHEZIFI,T.BAASOV, E.WESTHOF AMINOGLYCOSIDE, ANTIBIOTICS, RIBOSOME, DECODING SITE, HOMO SAPIENS, EUKARYOTE, CYTOPLASMIC, TRANSLATION INHIBITION, STOP CODON READTHROUGH, RNA 2.70 synthetic 2HGU S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGU CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGR. X-RAY DIFFRACTION 11-07-06 L.JENNER,G.YUSUPOVA,B.REES,D.MORAS,M.YUSUPOV RIBOSOME FUNCTIONAL COMPLEX, INITIATION 4.51 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3F2Y CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, MN2+ SOAK. X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG FMN, RIBOSWITCH, TRANSCRIPTION, MANGANESE, RNA 3.20 synthetic 2M8D STRUCTURE OF SRSF1 RRM2 IN COMPLEX WITH THE RNA 5'-UGAAGGAC-3' SOLUTION NMR 7-10-13 A.CLERY,R.SINHA,O.ANCZUKOW,A.CORRIONERO,A.MOURSY,G.DAUBNER, J.VALCARCEL,A.R.KRAINER,F.H.T.ALLAIN SR PROTEIN, PSEUDO-RRM, RRM, RNA BINDING PROTEIN-RNA COMPLEX synthetic 4GHL STRUCTURAL BASIS FOR MARBURG VIRUS VP35 MEDIATE IMMUNE EVASION MECHANISMS X-RAY DIFFRACTION 11-28-12 P.RAMANAN,D.M.BOREK,Z.OTWINOWSKI,D.W.LEUNG,G.K.AMARASINGHE PROTEIN-RNA COMPLEX, VP35, IFN INHIBITOR, RNA BINDING PROTEIN, INTERFERON ANTAGONISM, DOUBLE STRANDED RNA, TRANSCRIPTION, VIRAL PROTEIN-RNA COMPLEX 2.02 synthetic 406D '-R(*CP*AP*CP*CP*GP*GP*AP*UP*GP*GP*UP*(BRO) UP*CP*GP*GP*UP*G)-3' X-RAY DIFFRACTION 2-05-99 S.A.SHAH,A.T.BRUNGER DISORDERED, RNA, DOUBLE HELIX 1.80 engineered 3E5E CRYSTAL STRUCTURES OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SAH X-RAY DIFFRACTION 10-07-08 C.LU SMK SAM RIBOSWITCH SHINE-DELGARNO TRANSLATION REGULATION, RNA 2.90 synthetic 1SYZ SOLUTION STRUCTURE OF THE S. CEREVISIAE U6 INTRAMOLECULAR STEM LOOP (ISL) RNA AT PH 5.7 SOLUTION NMR 11-09-04 N.J.REITER,H.BLAD,F.ABILDGAARD,S.E.BUTCHER RNA, STEM-LOOP, GNRA-LIKE TETRATLOOP, A-C WOBBLE PAIR, INTERNAL LOOP synthetic 1ETF REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 3-12-97 J.L.BATTISTE,H.MAO,N.S.RAO,R.TAN,D.R.MUHANDIRAM,L.E.KAY, A.D.FRANKEL,J.R.WILLAMSON COMPLEX (RNA/PEPTIDE), EXPORT REGULATOR, MRNA SPLICING, TRANSCRIPTION REGULATION, VIRAL PROTEIN/RNA COMPLEX synthetic 1LUU NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 4 MODIFICATIONS (OMC32 OMG34 1MG37 5MC40) SOLUTION NMR 9-09-03 J.W.STUART,K.M.KOSHLAP,R.H.GUENTHER,P.F.AGRIS TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, 1MG, 2'-O-METHYL, 5MC synthetic 4E8N STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN A LIGAND-FREE STATE IN THE PRESENCE OF NH4+ AND MG2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, METALLOENZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA 2.96 OCEANOBACILLUS IHEYENSIS 2AVY CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-08-05 B.S.SCHUWIRTH,M.A.BOROVINSKAYA,C.W.HAU,W.ZHANG,A.VILA- SANJURJO,J.M.HOLTON,J.H.D.CATE RNA-PROTEIN COMPLEX, 30S RIBOSOMAL SUBUNIT, RIBOSOME 3.46 ESCHERICHIA COLI 1E95 SOLUTION STRUCTURE OF THE PSEUDOKNOT OF SRV-1 RNA, INVOLVED IN RIBOSOMAL FRAMESHIFTING SOLUTION NMR 8-23-01 P.J.A.MICHIELS,A.VERSLEYEN,C.W.A.PLEIJ,C.W.HILBERS,H.A.HEUS RIBONUCLEIC ACID, SRV-1, RNA, PSEUDOKNOT, FRAMESHIFT SIMIAN RETROVIRUS 1 1B23 E. COLI CYSTEINYL-TRNA AND T. AQUATICUS ELONGATION FACTOR EF-TU:GTP TERNARY COMPLEX X-RAY DIFFRACTION 12-07-98 P.NISSEN,M.KJELDGAARD,S.THIRUP,J.NYBORG TRANSLATION ELONGATION FACTOR, TRANSFER RNA, PROTEIN SYNTHESIS, GENE REGULATION/RNA COMPLEX 2.60 ESCHERICHIA COLI 4I67 CRYSTAL STRUCTURE OF THE RRM DOMAIN OF RNA HELICASE HERA FROM T. THERMOPHILUS IN COMPLEX WITH GGGC RNA X-RAY DIFFRACTION 4-24-13 M.G.RUDOLPH,D.KLOSTERMEIER UNWINDING, ATPASE, HEAT RESISTANT, RNA RECOGNITION MOTIF, RNA BINDING, HYDROLASE-RNA COMPLEX 2.33 synthetic 437D CRYSTAL STRUCTURE OF AN RNA PSEUDOKNOT FROM BEET WESTERN YELLOW VIRUS INVOLVED IN RIBOSOMAL FRAMESHIFTING X-RAY DIFFRACTION 12-03-98 L.SU,L.CHEN,M.EGLI,J.M.BERGER,A.RICH PSEUDOKNOT, RNA, TRIPLEX, VIRAL FRAMESHIFTING 1.60 synthetic 4JXX CRYSTAL STRUCTURE OF E COLI E. COLI GLUTAMINYL-TRNA SYNTHETASE BOUND TO TRNA(GLN)(CUG) AND ATP FROM NOVEL CRYOSTABILIZATION CONDITIONS X-RAY DIFFRACTION 5-01-13 J.J.PERONA,A.RODRIGUEZ-HERNANDEZ ROSSMANN FOLD, PROTEIN-RNA COMPLEX, TRANSFER RNA, TRNA AMINOACYLATION, TRNA(GLN), LIGASE-RNA COMPLEX 2.30 synthetic 4DB2 MSS116P DEAD-BOX HELICASE DOMAIN 2 BOUND TO AN RNA DUPLEX X-RAY DIFFRACTION 8-29-12 A.L.MALLAM,M.DEL CAMPO,B.D.GILMAN,D.J.SIDOTE,A.LAMBOWITZ DEAD-BOX, RNA HELICASE, HYDROLASE, RNA BINDING PROTEIN-RNA COMPLEX 3.16 synthetic 2Y12 THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2X1F STRUCTURE OF RNA15 RRM WITH BOUND RNA (GU) X-RAY DIFFRACTION 2-02-10 C.PANCEVAC,D.C.GOLDSTONE,A.RAMOS,I.A.TAYLOR TRANSCRIPTION-RNA COMPLEX, MRNA PROCESSING 1.60 synthetic 3O5H YEAST 80S RIBOSOME. THIS ENTRY CONSISTS OF THE 60S SUBUNIT OF THE SECOND 80S IN THE ASYMMETRIC UNIT. X-RAY DIFFRACTION 12-15-10 A.BEN-SHEM,L.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOMAL RNA AND PROTEINS, RIBOSOME, YEAST, EUKARYOTIC 4.00 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 2L1F STRUCTURE OF A CONSERVED RETROVIRAL RNA PACKAGING ELEMENT BY NMR SPECTROSCOPY AND CRYO-ELECTRON TOMOGRAPHY SOLUTION NMR 10-27-10 M.F.SUMMERS,R.N.IROBALIEVA,B.TOLBERT,A.SMALLS-MANTY,K.IYALLA, K.LOELIGER,V.D'SOUZA,H.KHANT,M.SCHMID,E.GARCIA,A.TELESNITSKY,W.CHIU, Y.MIYAZAKI RNA, RETROVIRUS, PACKAGING, CRYO-ET MOLONEY MURINE LEUKEMIA VIRUS,MOLONEY MURINE LEUKEMIA VIRUS 2LAR DNA / RNA HYBRID CONTAINING A CENTRAL STEREO SPECIFIC RP BORANO PHOSPHATE LINKAGE SOLUTION NMR 10-12-11 C.N.JOHNSON,A.M.SPRING,B.R.SHAW,M.W.GERMANN NUCLEIC ACID HETERODUPLEX, RNASE H1 ACTIVITY, DNA-RNA COMPLEX synthetic 3FO6 CRYSTAL STRUCTURE OF GUANINE RIBOSWITCH BOUND TO 6-O- METHYLGUANINE X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,F.E.REYES,R.T.BATEY RIBOSWITCH, MRNA, GUANINE, 6-O-METHYLGUANINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, THREE-WAY JUNCTION 1.90 synthetic 2Z4N CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH PAROMOMYCIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH PAROMOMYCIN AND RRF BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.45 ESCHERICHIA COLI,ESCHERICHIA COLI 4C8Z CAS6 (TTHA0078) PRODUCT COMPLEX X-RAY DIFFRACTION 11-06-13 M.JINEK,O.NIEWOEHNER,J.A.DOUDNA HYDROLASE-RNA COMPLEX, CRISPR CAS PROTEIN, RNA PROCESSING RIBONUCLEASE 2.50 THERMUS THERMOPHILUS HB8 3BO4 A RELAXED ACTIVE SITE FOLLOWING EXON LIGATION BY A GROUP I INTRON X-RAY DIFFRACTION 4-01-08 S.V.LIPCHOCK,S.A.STROBEL GROUP I INTRON, AZOARCUS, RIBOZYME, LIGATION, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, NUCLEAR PROTEIN/RNA COMPLEX 3.33 HOMO SAPIENS 2BU1 MS2-RNA HAIRPIN (5BRU-5) COMPLEX X-RAY DIFFRACTION 8-18-05 E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, COMPLEX (CAPSID PROTEIN/RNA HAIRPIN), HAIRPIN, CAPSID, LEVIVIRUS, CAPSID PROTEIN, RNA-BINDING, STRUCTURAL PROTEIN, ICOSAHEDRAL VIRUS 2.20 BACTERIOPHAGE MS2 4B5R SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI K-T-7 X-RAY DIFFRACTION 1-30-13 P.DALDROP,D.M.J.LILLEY RNA, RIBOSWITCH, K-TURN 2.95 THERMOANAEROBACTER TENGCONGENSIS 1FJE SOLUTION STRUCTURE OF NUCLEOLIN RBD12 IN COMPLEX WITH SNRE RNA SOLUTION NMR 1-03-01 F.H.T.ALLAIN,P.BOUVET,T.DIECKMANN,J.FEIGON RNP, RBD, RRM, RNA BINDING DOMAIN, RNA-PROTEIN COMPLEX, NUCLEOLUS, STRUCTURAL PROTEIN/RNA COMPLEX synthetic 3IWN CO-CRYSTAL STRUCTURE OF A BACTERIAL C-DI-GMP RIBOSWITCH X-RAY DIFFRACTION 11-10-09 N.KULSHINA,N.J.BAIRD,A.R.FERRE-D'AMARE RIBOSWITCH, RNA, U1A, RNA/RNA BINDING PROTEIN COMPLEX, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME 3.20 synthetic 1WVD HIV-1 DIS(MAL) DUPLEX COCL2-SOAKED X-RAY DIFFRACTION 12-21-04 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, RNA, BULGE, METAL IONS 2.93 synthetic 4DR2 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS (HB8) 30S RIBOSOMAL SUBUNIT WITH MULTIPLE COPIES OF PAROMOMYCIN MOLECULES BOUND X-RAY DIFFRACTION 11-14-12 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.25 THERMUS THERMOPHILUS 2R21 STRUCTURE OF THE RNA BROMINATED TRIDECAMER R(GCGUU- 5BUGAAACGC) AT 1.6 A (BRMN) X-RAY DIFFRACTION 9-25-07 Y.TIMSIT,S.BOMBARD MANGANESE, ASYMMETRY, ELECROSTATIC, MNOVALENT, RNA 1.59 synthetic 3L3C CRYSTAL STRUCTURE OF THE BACILLUS ANTHRACIS GLMS RIBOZYME BOUND TO GLC6P X-RAY DIFFRACTION 12-29-09 S.A.STROBEL,J.C.COCHRANE,S.V.LIPCHOCK,K.D.SMITH CATALYTIC RNA 2.85 synthetic,synthetic 2KRP SOLUTION STRUCTURE OF THE E. COLI TRNA-ARG2(ACG) ANTICODON STEM AND LOOP SOLUTION NMR 12-01-10 Y.BILBILLE,P.F.AGRIS RNA, ASL, MODIFICATION, ARGININE, TRNA synthetic 4A3D RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 6NT DNA-RNA HYBRID X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.40 SACCHAROMYCES CEREVISIAE 3J3E STRUCTURE OF THE D. MELANOGASTER 60S RRNA ELECTRON MICROSCOPY 5-01-13 A.M.ANGER,J.-P.ARMACHE,O.BERNINGHAUSEN,M.HABECK,M.SUBKLEWE, D.N.WILSON,R.BECKMANN EUKARYA, EUKARYOTIC, RIBOSOMAL, 80S, RNA, PROTEIN SYNTHESIS, MASS SPECTROMETRY, RIBOSOME 6.00 DROSOPHILA MELANOGASTER,DROSOPHILA MELANOGASTER,DROSOPHILA MELANOGASTER,DROSOPHILA MELANOGASTER 4BA2 ARCHAEAL EXOSOME (RRP4-RRP41(D182A)-RRP42) BOUND TO INORGANIC PHOSPHATE X-RAY DIFFRACTION 10-03-12 E.LORENTZEN,E.CONTI HYDROLASE-RNA COMPLEX, ARCHAEA, RNA DEGRADATION, PHOSPHOROLYTIC REACTION MECHANISM 2.50 SULFOLOBUS SOLFATARICUS 1Y6T HIV-1 DIS(MAL) DUPLEX CO HEXAMINE-SOAKED X-RAY DIFFRACTION 12-21-04 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, RNA, METAL IONS 2.60 synthetic 4BYW CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX ELECTRON MICROSCOPY 11-20-13 I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, S.H.W.SCHERES RIBOSOME, RIBOSOME INITIATION COMPLEX, INITIATOR FACTOR EIF5B, CRYO EM, SINGLE PARTICLE ANALYSIS 6.60 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 3EQ4 MODEL OF TRNA(LEU)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM ELECTRON MICROSCOPY 12-16-08 J.FRANK,W.LI,X.AGIRREZABALA PROTEIN TRANSLATION, TERNARY COMPLEX, A/T-TRNA, AUTOMATED DATA COLLECTION, ACETYLATION, ANTIBIOTIC RESISTANCE, CYTOPLASM, ELONGATION FACTOR, GTP-BINDING, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN BIOSYNTHESIS, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA- BINDING, RRNA-BINDING, TRNA-BINDING, RIBOSOMAL PROTEIN/RNA COMPLEX 10 ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12 1BYJ GENTAMICIN C1A A-SITE COMPLEX SOLUTION NMR 10-29-99 S.YOSHIZAWA,D.FOURMY,J.D.PUGLISI COMPLEX (AMINOGLYCOSIDE/RIBOSOMAL RNA) synthetic 4GD2 STRUCTURES OF THE BACTERIAL RIBOSOME IN CLASSICAL AND HYBRID STATES OF TRNA BINDING X-RAY DIFFRACTION 10-24-12 J.A.DUNKLE,L.WANG,M.B.FELDMAN,A.PULK,V.B.CHEN,G.J.KAPRAL,J.NOESKE, J.S.RICHARDSON,S.C.BLANCHARD,J.H.D.CATE PROTEIN BIOSYNTHESIS, RNA, TRNA, TRANSFER RNA, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME RECYCLING FACTOR, RRF, RIBOSOME 3.00 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1A4D LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 4-29-98 A.DALLAS,P.B.MOORE S RRNA, INTERNAL LOOP, CROSS-STRAND STACK, TRANSLATION, RIBOSOME, RIBOSOMAL RNA COMPLEX ESCHERICHIA COLI,ESCHERICHIA COLI 3GX2 TTESAM-I RIBOSWITCH VARIANT A94GU34C BOUND TO SINEFUNGIN X-RAY DIFFRACTION 1-12-10 R.K.MONTANGE,R.T.BATEY KINK-TURN, PSEUDOKNOT, FOUR-WAY JUNCTION, RNA 2.90 synthetic 1BMV PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION X-RAY DIFFRACTION 10-09-89 Z.CHEN,C.STAUFFACHER,Y.LI,T.SCHMIDT,W.BOMU,G.KAMER,M.SHANKS, G.LOMONOSSOFF,J.E.JOHNSON PROTEIN-RNA COMPLEX, SINGLE STRAND, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 3.00 BEAN POD MOTTLE VIRUS 3E5C CRYSTAL STRUCTURE OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SAM X-RAY DIFFRACTION 10-07-08 C.LU SAM RIBOSWITCH SMK SAM-III TRANSLATION REGULATION SD, RNA 2.25 synthetic 3S49 RNA CRYSTAL STRUCTURE WITH 2-SE-URIDINE MODIFICATION X-RAY DIFFRACTION 6-29-11 J.SHENG,J.GAN,H.SUN,A.E.H.HASSAN,S.JIANG,Z.HUANG RNA, 2-SE-URIDINE 2.30 synthetic 3F1F CRYSTAL STRUCTURE OF A TRANSLATION TERMINATION COMPLEX FORMED WITH RELEASE FACTOR RF2. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 12-23-08 A.KOROSTELEV,H.ASAHARA,L.LANCASTER,M.LAURBERG,A.HIRSCHI, H.F.NOLLER RF2, RIBOSOME, TERMINATION, TRNA 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1TJZ SOLUTION STRUCTURE OF THE ACTIVE SITE STEM-LOOP OF THE VS RIBOZYME SOLUTION NMR 9-28-04 J.FLINDERS,T.DIECKMANN RNA HAIRPIN, RNA STEM-LOOP, PROTONATED ADENINE, GA BASE PAIR synthetic 1N34 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CODON AND CRYSTALLOGRAPHICALLY DISORDERED NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE FIRST CODON POSITION X-RAY DIFFRACTION 11-29-02 J.M.OGLE,F.V.MURPHY IV,M.J.TARRY,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, A SITE, DECODING, NEAR- COGNATE,MISMATCH, WOBBLE, GU, G:U, TRANSFER RNA, TRNA, ANTICODON, STEM-LOOP, MESSENGER RNA, MRNA, CODON, ANTIBIOTIC, PAROMOMYCIN 3.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2LDZ SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 2-23-99 C.G.HOOGSTRATEN,P.LEGAULT,A.PARDI CATALYTIC RNA, INTERNAL LOOPS, LEADZYME, NMR SPECTROSCOPY, RNA STRUCTURE synthetic 2I2U CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-24-06 V.BERK,W.ZHANG,R.D.PAI,J.H.D.CATE RIBOSOME, PROTEIN-NUCLEIC ACID COMPLEXES 3.22 ESCHERICHIA COLI,synthetic,synthetic 4JYZ CRYSTAL STRUCTURE OF E. COLI GLUTAMINYL-TRNA SYNTHETASE BOUND TO ATP AND NATIVE TRNA(GLN) CONTAINING THE CMNM5S2U34 ANTICODON WOBBLE BASE X-RAY DIFFRACTION 5-29-13 J.J.PERONA,A.RODRIGUEZ-HERNANDEZ ROSSMANN FOLD, PROTEIN-RNA COMPLEX, AMINOACYL-TRNA SYNTHETASE, LIGASE, LIGASE-RNA COMPLEX 2.50 ESCHERICHIA COLI 3J2A DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 13.10 ESCHERICHIA COLI 4AS1 TERNARY COMPLEX OF E. COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND THE BENZOXABOROLE AN2679 IN THE EDITING CONFORMATION X-RAY DIFFRACTION 6-13-12 A.PALENCIA,T.CREPIN,M.T.VU,T.L.LINCECUM JR,S.A.MARTINIS,S.CUSACK LIGASE-RNA COMPLEX, LIGASE, NUCLEOTIDE(ATP)-BINDING, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE 2.02 ESCHERICHIA COLI 1PNY CRYSTAL STRUCTURE OF THE WILD TYPE RIBOSOME FROM E. COLI, 50S SUBUNIT OF 70S RIBOSOME. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX. X-RAY DIFFRACTION 7-15-03 A.VILA-SANJURJO,W.K.RIDGEWAY,V.SEYMANER,W.ZHANG,S.SANTOSO, K.YU,J.H.D.CATE S RIBOSOMAL SUBUNIT, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, RIBOSOME 9.50 ESCHERICHIA COLI,ESCHERICHIA COLI 3IQP SAM-I RIBOSWITCH FROM T. TENCONGENSIS VARIANT A94G APO FORM X-RAY DIFFRACTION 8-04-10 R.K.MONTANGE,R.T.BATEY RIBOSWITCH, SAM, KINK-TURN, PSUEDOKNOT, RNA 2.90 synthetic 3HUY STRUCTURE OF EF-P BOUND TO THE 70S RIBOSOME; THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE TRNA AND EF-P FOR MOLECULE II. X-RAY DIFFRACTION 9-29-09 R.E.STANLEY,G.BLAHA TRANSLATION, ELONGATION FACTOR, INITIATION, L1-STALK, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA- BINDING, CYTOPLASM, PROTEIN BIOSYNTHESIS, RIBOSOME 3.10 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,synthetic 2KU0 INHIBITOR INDUCED STRUCTURAL CHANGE IN THE HCV IRES DOMAIN IIA RNA SOLUTION NMR 4-28-10 R.B.PAULSEN,P.P.SETH,E.E.SWAYZE,R.H.GRIFFEY,J.J.SKALICKY,T.E.CHEATHAM III,D.R.DAVIS HEPATITIS C VIRUS, RNA STRUCTURE, ANTIVIRAL, RNA HEPATITIS C VIRUS 3KS8 CRYSTAL STRUCTURE OF RESTON EBOLAVIRUS VP35 RNA BINDING DOMAIN IN COMPLEX WITH 18BP DSRNA X-RAY DIFFRACTION 1-12-10 C.R.KIMBERLIN,Z.A.BORNHOLDT,S.LI,V.L.WOODS,I.J.MACRAE, E.O.SAPHIRE EBOLAVIRUS, RNA-BINDING PROTEIN, PROTEIN-RNA COMPLEX, INTERFERON, RESTON, HOST CYTOPLASM, INTERFERON ANTIVIRAL SYSTEM EVASION, RNA REPLICATION, RNA-BINDING, TRANSCRIPTION, VIRION 2.40 synthetic,synthetic 1RXA CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES X-RAY DIFFRACTION 10-20-96 S.PORTMANN,N.USMAN,M.EGLI A-RNA, DOUBLE HELIX 2.90 synthetic 2PXD VARIANT 1 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.00 ESCHERICHIA COLI 2DU4 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS X-RAY DIFFRACTION 3-13-07 R.FUKUNAGA ALPHA4 TETRAMER, LIGASE/RNA COMPLEX 2.80 synthetic 4B8G CRYSTAL STRUCTURE OF 70S RIBOSOME WITH BOTH COGNATE TRNAS IN THE E AND P SITES REPRESENTING AN AUTHENTIC ELONGATION COMPLEX. X-RAY DIFFRACTION 4-03-13 Y.G.GAO,S.FENG,Y.CHEN RIBOSOME, TRANSLATION 3.70 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 1XV6 THE SOLUTION STRUCTURE OF 2',5'-LINKED 3'-O-(2- METHOXYETHYL)-RNA HAIRPIN SOLUTION NMR 4-05-05 M.PLEVNIK,Z.GDANIEC,J.PLAVEC HAIRPIN, (2',5')-RNA, 3'-O-(2-METHOXYETHYL) RIBOSE synthetic 4JNG SCHMALLENBERG VIRUS NUCLEOPROTEIN-RNA COMPLEX X-RAY DIFFRACTION 7-31-13 H.H.DONG,P.LI,B.BOTTCHER,R.M.ELLIOTT,C.J.DONG NEGATIVE-STRANDED RNA VIRUS NUCLEOPROTEIN, BUNYAVIRUS, PROTECT GENOMIC RNA, VIRAL PROTEIN-RNA COMPLEX 2.12 synthetic 3FWO THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH METHYMYCIN X-RAY DIFFRACTION 1-19-10 T.AUERBACH,I.MERMERSHTAIN,A.BASHAN,C.DAVIDOVICH,C.H.ROZENBERG, D.H.SHERMAN,A.YONATH RIBOSOME; LARGE SUBUNIT; 50S; DEINOCOCCUS RADIODURANS; X-RAY STRUCTURE; PEPTIDYL-TRANSFERASE, PEPTIDE BOND FORMATION,ANTIBIOTICS, MACROLIDES, RIBOSOME 3.71 DEINOCOCCUS RADIODURANS R1,DEINOCOCCUS RADIODURANS R1 1K73 CO-CRYSTAL STRUCTURE OF ANISOMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 7-22-03 J.HANSEN,N.BAN,P.NISSEN,P.B.MOORE,T.A.STEITZ S, ANISOMYCIN, ANTIBIOTIC, HARLOARCULA MARISMORTUI, RIBOSOME 3.01 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1KAJ CONFORMATION OF AN RNA PSEUDOKNOT FROM MOUSE MAMMARY TUMOR VIRUS, NMR, 1 STRUCTURE SOLUTION NMR 7-11-96 H.KANG,J.V.HINES,I.TINOCO JUNIOR PSEUDOKNOT, FRAMESHIFTING, RETROVIRUS, RIBONUCLEIC ACID, RNA synthetic 3OHZ STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH AZITHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, AZITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3ICQ KARYOPHERIN NUCLEAR STATE X-RAY DIFFRACTION 8-25-09 A.G.COOK,N.FUKUHARA,M.JINEK,E.CONTI KARYOPHERIN, EXPORTIN, HEAT REPEAT, TRNA, GTPASE, RNA BINDING PROTEIN 3.20 synthetic 2NVQ RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH 2'DUTP X-RAY DIFFRACTION 12-12-06 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 2.90 synthetic 1NA2 SOLUTION STRUCTURE OF THE P2B HAIRPIN FROM HUMAN TELOMERASE RNA SOLUTION NMR 1-21-03 C.A.THEIMER,L.D.FINGER,L.TRANTIREK,J.FEIGON U-U BASE PAIR, U-C BASE PAIR, PENTALOOP, HAIRPIN, RNA, NMR, TELOMERASE, NARROW MINOR GROOVE, U TRACTS synthetic 3OI2 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH TELITHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, TELITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS 4J7M CRYSTAL STRUCTURE OF MOUSE DXO IN COMPLEX WITH SUBSTRATE MIMIC RNA AND CALCIUM ION X-RAY DIFFRACTION 3-27-13 J.H.CHANG,L.TONG DECAPPING, 5'-3' EXORIBONUCLEASE, HYDROLASE, HYDROLASE-RNA COMPLEX 1.70 SYNTHETIC CONSTRUCT 4K4Y COXSACKIEVIRUS B3 POLYMERASE ELONGATION COMPLEX (R2+1_FORM) X-RAY DIFFRACTION 5-29-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.72 synthetic,synthetic 3CW5 E. COLI INITIATOR TRNA X-RAY DIFFRACTION 9-02-08 P.BARRAUD,E.SCHMITT,Y.MECHULAM,F.DARDEL,C.TISNE TRNA, INITIATOR 3.10 ESCHERICHIA COLI 2VHO STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4) X-RAY DIFFRACTION 2-26-08 R.BINGEL-ERLENMEYER,R.KOHLER,G.KRAMER,A.SANDIKCI,S.ANTOLIC, T.MAIER,C.SCHAFFITZEL,B.WIEDMANN,B.BUKAU,N.BAN TRANSLATION, PEPTIDE DEFORMYLASE, RNA-PROTEIN COMPLEX, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, 30S RIBOSOMAL SUBUNIT, ANTIBIOTIC RESISTANCE, RIBOSOME, NASCENT CHAIN PROCESSING, RNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, PROTEIN BIOSYNTHESIS 3.74 ESCHERICHIA COLI 1Q82 CRYSTAL STRUCTURE OF CC-PUROMYCIN BOUND TO THE A-SITE OF THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 10-07-03 J.L.HANSEN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME 50S, PUROMYCIN, A-SITE, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX 2.98 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 3J3D STRUCTURE OF THE H. SAPIENS 40S RRNA AND E-TRNA ELECTRON MICROSCOPY 5-01-13 A.M.ANGER,J.-P.ARMACHE,O.BERNINGHAUSEN,M.HABECK,M.SUBKLEWE, D.N.WILSON,R.BECKMANN EUKARYA, EUKARYOTIC, RIBOSOMAL, 80S, RNA, PROTEIN SYNTHESIS, MASS SPECTROMETRY, RIBOSOME 5.00 HOMO SAPIENS,HOMO SAPIENS 1T1M BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE E. COLI 70S RIBOSOME ELECTRON MICROSCOPY 6-15-04 R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA,T.M.BOOTH, C.M.SPAHN,R.A.GRASSUCCI,A.KAJI,J.FRANK RRF BINDING POSITION ON THE RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI 2GRW SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM SOLUTION NMR 3-06-07 H.A.HEUS,J.ZOLL,M.TESSARI,F.J.M.VAN KUPPEVELD,W.J.G.MELCHERS RNA, POLIOVIRUS, STEM-LOOP, PSEUDO-2-FOLD SYMMETRY synthetic 3WFQ TRNA PROCESSING ENZYME COMPLEX 1 X-RAY DIFFRACTION 1-01-14 S.YAMASHITA,D.TAKESHITA,K.TOMITA TERMINAL NUCLEOTIDE TRANSFERASE, TRANSFERASE-RNA COMPLEX 3.62 THERMOTOGA MARITIMA MSB8 1J6S CRYSTAL STRUCTURE OF AN RNA TETRAPLEX (UGAGGU)4 WITH A- TETRADS, G-TETRADS, U-TETRADS AND G-U OCTADS X-RAY DIFFRACTION 8-05-03 B.PAN,Y.XIONG,K.SHI,J.DENG,M.SUNDARALINGAM RNA, TETRAPLEX, G-U OCTADS, A-TETRADS, U-TETRADS, G-TETRADS 1.40 synthetic 3VJR CRYSTAL STRUCTURE OF PEPTIDYL-TRNA HYDROLASE FROM ESCHERICHIA COLI IN COMPLEX WITH THE CCA-ACCEPTOR-T[PSI]C DOMAIN OF TRNA X-RAY DIFFRACTION 9-12-12 K.ITO,R.MURAKAMI,M.MOCHIZUKI,H QI,Y.SHIMIZU,K.I.MIURA,T.UEDA, T.UCHIUMI PEPTIDYL-TRNA HYDROLASE, CCA-ACCEPTOR-T[PSI]C DOMAIN, SEVEN BETA- STRANDS FORM, HYDROLASE-RNA COMPLEX 2.40 synthetic 3IRW STRUCTURE OF A C-DI-GMP RIBOSWITCH FROM V. CHOLERAE X-RAY DIFFRACTION 11-10-09 K.D.SMITH RIBOSWITCH, C-DI-GMP, RNA, RNA BINDING PROTEIN-RNA COMPLEX 2.70 VIBRIO CHOLERAE 2H0Z PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSE-6-PHOSPHATE X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA, RIBOZYME, PSEUDOKNOT, HELIX 2.70 synthetic 1YNE NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEMENTARY FACTOR SOLUTION NMR 2-08-05 C.MARIS,J.MASSE,F.H.ALLAIN,A.CHESTER,N.NAVARATNAM RNA EDITING; APOB MRNA; APOBEC1; ACF; NMR STRUCTURE synthetic 2B63 COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX X-RAY DIFFRACTION 12-06-05 H.KETTENBERGER,A.EISENFUEHR,F.BRUECKNER,M.THEIS,M.FAMULOK, P.CRAMER RNA POLYMERASE II, RNA, APTAMER, PROTEIN-RNA COMPLEX, INHIBITOR, TRANSFERASE/RNA COMPLEX 3.80 synthetic 4G0A CRYSTALLOGRAPHIC ANALYSIS OF ROTAVIRUS NSP2-RNA COMPLEX REVEALS SPECIFIC RECOGNITION OF 5'-GG SEQUENCE FOR RTPASE ACTIVITY X-RAY DIFFRACTION 8-22-12 L.HU,B.V.V.PRASAD RNA TRIPHOSPHATASE, RNA BINDING, HYDROLASE ACTIVITY, NUCLEOTIDE BINDING, METAL ION BINDING, HOST CELL CYTOPLASM, HYDROLASE-RNA COMPLEX 2.10 SYNTHETIC CONSTRUCT 1C2Q SOLUTION STRUCTURE OF A DNA.RNA HYBRID CONTAINING AN ALPHAT- ANOMERIC THYMIDINE AND POLARITY REVERSALS SOLUTION NMR 11-29-99 M.W.GERMANN,J.M.ARAMINI DNA/RNA HYBRID, ALPHAT-ANOMERIC THYMIDINE, 3'-3'/5'-5' PHOSPHODIESTER LINKAGES, DNA-RNA HYBRID synthetic 3J5D E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST2B, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 4ENC CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH X-RAY DIFFRACTION 5-09-12 A.R.REN,K.R.RAJASHANKAR,D.J.PATEL PSEUDOKNOT, RNA 2.27 THERMOTOGA PETROPHILA 2ZKO STRUCTURAL BASIS FOR DSRNA RECOGNITION BY NS1 PROTEIN OF HUMAN INFLUENZA VIRUS A X-RAY DIFFRACTION 10-14-08 Y.A.YUAN DSRNA, PROTEIN-RNA INTERACTION, ALTERNATIVE SPLICING, CYTOPLASM, HOST-VIRUS INTERACTION, INTERFERON ANTIVIRAL SYSTEM EVASION, NUCLEUS, RNA-BINDING, SUPPRESSOR OF RNA SILENCING, RNA BINDING PROTEIN/RNA COMPLEX 1.70 INFLUENZA A VIRUS 3UYE CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1UVM THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 WITH 5NT RNA CONFORMATION A X-RAY DIFFRACTION 2-19-04 P.S.SALGADO,E.V.MAKEYEV,S.BUTCHER,D.BAMFORD,D.I.STUART, J.M.GRIMES POLYMERASE, TRANSFERASE, NUCLEOTIDYLTRANSFERASE, TRANSCRIPTION 2.00 synthetic 2OGM THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-571519 X-RAY DIFFRACTION 5-01-07 C.DAVIDOVICH,A.BASHAN,T.AUERBACH-NEVO,A.YONATH SB-571519, PLEUROMUTILIN, PTC, PEPTIDYL TRANSFERASE CENTER, RIBOSOME, ANTIBIOTIC 3.50 DEINOCOCCUS RADIODURANS 3BBI MINIMALLY JUNCTIONED HAIRPIN RIBOZYME INCORPORATING A38(2AP) AND A-1 2'-O-ME MODIFICATIONS NEAR ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME, 2-AMINOPURINE, 2'O-METHYL, PHOSPHORYL TRANSFER, RNA, LINKER 2.35 synthetic,synthetic,synthetic 3UXS THE STRUCTURE OF THERMORUBIN IN COMPLEX WITH THE 70S RIBOSOME FROM THERMUS THERMOPHILUS. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 1-25-12 D.BULKLEY,T.A.STEITZ,F.A.JOHNSON RIBOSOME, PROTEIN SYNTHESIS, THERMORUBIN 3.20 THERMUS THERMOPHILUS 3E3J CRYSTAL STRUCTURE OF AN INTERMEDIATE COMPLEX OF T7 RNAP AND 8NT OF RNA X-RAY DIFFRACTION 11-04-08 K.J.DURNIAK,S.BAILEY,T.A.STEITZ T7 RNA POLYMERASE, DNA-DIRECTED RNA POLYMERASE, TRANSCRIPTION, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE/RNA/DNA COMPLEX 6.70 synthetic 1ZH5 STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOANTIGEN X-RAY DIFFRACTION 1-17-06 M.TEPLOVA,Y.R.YUAN,S.ILIN,L.MALININA,A.T.PHAN,A.TEPLOV, D.J.PATEL TRANSCRIPTION/RNA 1.85 synthetic 3DD2 CRYSTAL STRUCTURE OF AN RNA APTAMER BOUND TO HUMAN THROMBIN X-RAY DIFFRACTION 11-11-08 S.B.LONG,B.A.SULLENGER THROMBIN, APTAMER, RNA, DNA, HEPARIN, EXOSITE, HYDROLASE, PROTEASE, SERINE PROTEASE, HYDROLASE/RNA COMPLEX 1.90 synthetic 1MIS STRUCTURE OF RNA (5'-R(GP*CP*GP*GP*AP*CP*GP*C)-3') ANTI- PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATCHES, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 7-07-97 M.WU,D.H.TURNER RNA, TANDEM G:A MISMATCH, RIBONUCLEIC ACID synthetic 3GVN THE 1.2 ANGSTROEM CRYSTAL STRUCTURE OF AN E.COLI TRNASER ACCEPTOR STEM MICROHELIX REVEALS TWO MAGNESIUM BINDING SITES X-RAY DIFFRACTION 7-28-09 A.EICHERT,J.P.FURSTE,A.SCHREIBER,M.PERBANDT,C.BETZEL, V.A.ERDMANN,C.FORSTER TRNASER/SERYL-TRNA-SYNTHETASE, TRNA ACCEPTOR STEM MICROHELIX, X-RAY STRUCTURE, IDENTITY ELEMENTS, RNA HYDRATION, MAGNESIUM BINDING SITES 1.20 synthetic,synthetic 2YHM STRUCTURE OF RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN, P212121 CRYSTAL FORM X-RAY DIFFRACTION 1-25-12 K.EL OMARI,B.DHALIWAL,J.REN,N.G.A.ABRESCIA,M.LOCKYER,K.L.POWELL, A.R.HAWKINS,D.K.STAMMERS VIRAL PROTEIN-RNA COMPLEX 3.60 ESCHERICHIA COLI 1XPO STRUCTURAL MECHANISM OF INHIBITION OF THE RHO TRANSCRIPTION TERMINATION FACTOR BY THE ANTIBIOTIC BICYCLOMYCIN X-RAY DIFFRACTION 2-08-05 E.SKORDALAKES,A.P.BROGAN,B.S.PARK,H.KOHN,J.M.BERGER RHO; BICYCLOMYCIN, TRANSCRIPTION/RNA COMPLEX 3.15 synthetic 1HS8 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA) SOLUTION NMR 9-02-03 H.ZHANG,B.RICART,M.HUCK,T.R.KRUGH RIBONUCLEIC ACID, HAIRPIN LOOP, RNA STRUCTURE synthetic 1I6H RNA POLYMERASE II ELONGATION COMPLEX X-RAY DIFFRACTION 4-23-01 A.L.GNATT,P.CRAMER,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION/DNA/RNA COMPLEX, TRANSCRIPTION/DNA-RNA HYBRID COMPLEX 3.30 synthetic 4ERJ CRYSTAL STRUCTURE OF THE LYSINE RIBOSWITCH BOUND TO A 6-AMINOCAPROIC ACID X-RAY DIFFRACTION 7-18-12 A.D.GARST,E.PORTER,R.T.BATEY RIBOSWITCH APTAMER DOMAIN, REGULATORY MRNA, TRANSLATION, TRANSCRIPTION 3.00 THERMOTOGA MARITIMA 471D CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA X-RAY DIFFRACTION 5-12-99 M.TEPLOVA,G.MINASOV,V.TERESHKO,G.INAMATI,P.D.COOK,M.EGLI '-O-(2-METHOXYETHYL) RIBOSE, RNA DODECAMER DUPLEX, RIBONUCLEIC ACID 2.70 synthetic 1Z79 CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING SITE SPECIFIC 2'-AMINE SUBSTITUTION AT A C-A MISMATCH (AT PH 5) X-RAY DIFFRACTION 10-18-05 C.M.GHERGHE,J.M.KRAHN,K.M.WEEKS '-AMINE, RNA, DUPLEX, MISMATCH 2.55 synthetic 4BPB STRUCTURAL INSIGHTS INTO RNA RECOGNITION BY RIG-I X-RAY DIFFRACTION 6-19-13 D.LUO,A.M.PYLE HYDROLASE-RNA COMPLEX, ADENOSINE TRIPHOSPHATE, DEAD-BOX RNA HELICASES, DOUBLE-STRANDED, SIGNAL TRANSDUCTION 2.58 HOMO SAPIENS 2BJ2 RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 2-02-99 A.J.LEE,D.M.CROTHERS COLE1 RNA, NMR, LOOP-LOOP COMPLEX, KISS COMPLEX, RIBONUCLEIC ACID synthetic,synthetic 4DZS CRYSTAL STRUCTURE OF YEAST PUF4P RNA BINDING DOMAIN IN COMPLEX WITH HO-4BE MUTANT RNA X-RAY DIFFRACTION 4-25-12 C.QIU,T.M.T HALL PUF RNA BINDING DOMAIN, RNA BINDING, RNA, RNA BINDING PROTEIN-RNA COMPLEX 3.14 synthetic 468D CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA X-RAY DIFFRACTION 5-12-99 M.TEPLOVA,G.MINASOV,V.TERESHKO,G.INAMATI,P.D.COOK,M.EGLI '-O-(2-METHOXYETHYL) RIBOSE, RNA DODECAMER DUPLEX, RIBONUCLEIC ACID 1.80 synthetic 4IQX MUTANT P44S P169S M296I OF FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE X-RAY DIFFRACTION 2-06-13 C.FERRER-ORTA,N.VERDAGUER,R.AGUDO,R.PEREZ-LUQUE CLOSE RIGHT HAND CONFORMATION, RNA-DEPENDENT RNA POLYMERASE, 3D POLYMERASE, TRANSFERASE-DNA COMPLEX 2.50 SYNTHETIC CONSTRUCT,SYNTHETIC CONSTRUCT 3J0P CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FITTED TO A 10.6A CRYO-EM MAP: ROTATED PRE STATE 1 ELECTRON MICROSCOPY 11-16-11 T.BUDKEVICH,J.GIESEBRECHT,R.ALTMAN,J.MUNRO,T.MIELKE,K.NIERHAUS, S.BLANCHARD,C.M.SPAHN MAMMALIA, TRANSLATION, ELONGATION CYCLE, TRNA, RIBOSOME 10.60 ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS 1D0T SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN SOLUTION NMR 5-24-00 J.S.SMITH,E.P.NIKONOWICZ RNA HAIRPIN, PHOSPHOROTHIOATE, THIOPHOSPHATE, BULGED BASE, STEM-LOOP synthetic 2XGJ STRUCTURE OF MTR4, A DEXH HELICASE INVOLVED IN NUCLEAR RNA PROCESSING AND SURVEILLANCE X-RAY DIFFRACTION 6-23-10 J.R.WEIR,F.BONNEAU,J.HENTSCHEL,E.CONTI HYDROLASE-RNA COMPLEX, HYDROLASE, TRAMP, EXOSOME, DEAD, NUCLEOTIDE-BINDING 2.90 synthetic 3MRZ RECOGNITION OF THE AMBER STOP CODON BY RELEASE FACTOR RF1. THIS ENTRY 3MRZ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3MS0. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3MR8 (50S) AND 3MS1 (30S). X-RAY DIFFRACTION 7-14-10 A.KOROSTELEV,J.ZHU,H.ASAHARA,H.F.NOLLER S, RIBOSOME, TERMINATION, RELEASE FACTOR, RF1, STOP CODON, UGA, AMBER, TRNA 3.62 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1ZDH MS2 COAT PROTEIN/RNA COMPLEX X-RAY DIFFRACTION 4-21-97 L.LILJAS K.VALEGARD,S.VAN DEN WORM COMPLEX (COAT PROTEIN/RNA), COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.70 ENTEROBACTERIO PHAGE MS2 4ERD CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF TETRAHYMENA TELOMERASE PROTEIN P65 IN COMPLEX WITH STEM IV OF TELOMERASE RNA X-RAY DIFFRACTION 6-20-12 M.SINGH,Z.WANG,B.-K.KOO,A.PATEL,D.CASCIO,K.COLLINS,J.FEIGON LA PROTEIN, LARP7, RRM, XRRM, TER, RNA BINDING PROTEIN-RNA COMPLEX 2.59 TETRAHYMENA THERMOPHILA 2QAN CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.21 ESCHERICHIA COLI 3I55 CO-CRYSTAL STRUCTURE OF MYCALAMIDE A BOUND TO THE LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 3-09-10 G.GUREL,G.BLAHA,T.A.STEITZ,P.B.MOORE LARGE RIBOSOMAL SUBUNIT, MYCALAMIDE A, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, ACETYLATION, RIBOSOME- ANTIBIOTIC COMPLEX 3.11 HALOARCULA MARISMORTUI ATCC 43049,HALOARCULA MARISMORTUI 1N66 STRUCTURE OF THE PYRIMIDINE-RICH INTERNAL LOOP IN THE Y- DOMAIN OF POLIOVIRUS 3'UTR SOLUTION NMR 8-19-03 E.M.LESCRINIER,M.TESSARI,F.J.VAN KUPPEVELD,W.J.MELCHERS, C.W.HILBERS,H.A.HEUS RNA INTERNAL LOOP synthetic 2JA8 CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX D X-RAY DIFFRACTION 2-20-07 F.BRUECKNER,U.HENNECKE,T.CARELL,P.CRAMER DNA-DIRECTED RNA POLYMERASE, LESION RECOGNITION, TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING, PHOTOLESION, PHOSPHORYLATION, MISINCORPORATION, RNA POLYMERASE II, TRANSCRIPTION-COUPLED REPAIR, CYCLOBUTANE PYRIMIDINE DIMER TCR, CPD, ZINC, ARREST, STALLING, DNA LESION, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, NUCLEOTIDYLTRANSFERASE, DAMAGE RECOGNITION, ELONGATION COMPLEX, TRANSFERASE, THYMINE DIMER, TRANSCRIPTION 3.8 synthetic 2LUB HIGH RESOLUTION NMR SOLUTION STRUCTURE OF HELIX H1 OF THE HUMAN HAR1 RNA SOLUTION NMR 7-25-12 M.CEVEC,M.ZIEGELER,C.RICHTER,H.SCHWALBE HUMAN HAR1 RNA, UUCG TETRALOOP, HAIRPIN, RNA synthetic 2JUK GUANIDINO NEOMYCIN B RECOGNITION OF AN HIV-1 RNA HELIX SOLUTION NMR 11-20-07 D.W.STAPLE,V.VENDITTI,N.NICCOLAI,L.ELSON-SCHWAB,Y.TOR, S.E.BUTCHER HIV-1, RNA-LIGAND INTERACTIONS, GUANIDINOGLYCOSIDES, NMR, RNA synthetic 3PEW S. CEREVISIAE DBP5 L327V BOUND TO RNA AND ADP BEF3 X-RAY DIFFRACTION 3-23-11 B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER,K.WEIS RECA, DEAD-BOX, ATPASE, HELICASE, MRNA EXPORT, NUCLEAR PORE, HYDROLASE-RNA COMPLEX 1.50 synthetic 3EP2 MODEL OF PHE-TRNA(PHE) IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM ELECTRON MICROSCOPY 12-16-08 J.FRANK,W.LI,X.AGIRREZABALA PROTEIN TRANSLATION, TERNARY COMPLEX, A/T-TRNA, AUTOMATED DATA COLLECTION, ACETYLATION, ANTIBIOTIC RESISTANCE, CYTOPLASM, ELONGATION FACTOR, GTP-BINDING, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN BIOSYNTHESIS, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA- BINDING, RRNA-BINDING, TRNA-BINDING, RIBOSOMAL PROTEIN/RNA COMPLEX 10 ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12 4JI6 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING 3.55 THERMUS THERMOPHILUS 3K4E PUF3 RNA BINDING DOMAIN BOUND TO COX17 RNA 3' UTR RECOGNITION SEQUENCE SITE A X-RAY DIFFRACTION 10-27-09 D.ZHU,C.R.STUMPF,J.M.KRAHN,M.WICKENS,T.M.T HALL PUF3, PUMILIO, RNA BINDING, MITOCHONDRIAL MRNA, CYTOPLASM, MEMBRANE, MITOCHONDRION, MITOCHONDRION OUTER MEMBRANE, PHOSPHOPROTEIN, RNA-BINDING, RNA BINDING PROTEIN / RNA COMPLEX 3.20 synthetic 2E2H RNA POLYMERASE II ELONGATION COMPLEX AT 5 MM MG2+ WITH GTP X-RAY DIFFRACTION 12-12-06 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.95 synthetic 1MFQ CRYSTAL STRUCTURE ANALYSIS OF A TERNARY S-DOMAIN COMPLEX OF HUMAN SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 9-20-02 A.KUGLSTATTER,C.OUBRIDGE,K.NAGAI RNA-PROTEIN COMPLEX, A-MINOR MOTIF, 3-HELIX JUNCTION, SIGNALING PROTEIN/RNA COMPLEX 3.10 HOMO SAPIENS 1A1T STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO THE SL3 PSI-RNA RECOGNITION ELEMENT, NMR, 25 STRUCTURES SOLUTION NMR 6-17-98 R.N.DE GUZMAN,Z.R.WU,C.C.STALLING,L.PAPPALARDO,P.N.BORER, M.F.SUMMERS NUCLEOCAPSID PROTEIN, COMPLEX (NUCLEOCAPSID PROTEIN/RNA), STEM-LOOP RNA, VIRAL PROTEIN/RNA COMPLEX synthetic 3UZ9 CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-TYR COMPLEX. X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2QH4 SOLUTION STRUCTURE OF THE U85 C/D-H/ACA SCARNA 5' TERMINAL HAIRPIN LOOP SOLUTION NMR 9-25-07 J.FEIGON,C.A.THEIMER,N.CHIM,K.E.BREECE LOOP, SHEARED GA PAIR, RNA synthetic 1EHZ THE CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRNA AT 1.93 A RESOLUTION X-RAY DIFFRACTION 10-02-00 H.SHI,P.B.MOORE TRNA, YEAST, PHENYLALANINE 1.93 synthetic 2DU3 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE COMPLEXED WITH TRNACYS AND O-PHOSPHOSERINE X-RAY DIFFRACTION 3-13-07 R.FUKUNAGA ALPHA4 TETRAMER, LIGASE/RNA COMPLEX 2.60 synthetic 3BSO NORWALK VIRUS POLYMERASE BOUND TO CYTIDINE 5'-TRIPHOSPHATE AND PRIMER-TEMPLATE RNA X-RAY DIFFRACTION 1-08-08 D.F.ZAMYATKIN,K.K.S.NG RNA-DEPENDENT RNA POLYMERASE, VIRAL REPLICATION, ANTIVIRAL ENZYME INHIBITOR, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPLICATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE, TRANSFERASE/RNA COMPLEX 1.74 synthetic,synthetic 1OO7 DNA.RNA HYBRID DUPLEX CONTAINING A 5-PROPYNE DNA STRAND AND PURINE-RICH RNA STRAND, NMR, 4 STRUCTURES SOLUTION NMR 11-11-03 J.I.GYI,D.GAO,G.L.CONN,J.O.TRENT,T.BROWN,A.N.LANE DNA.RNA HYBRID, PURINE/PYRIMIDINE-RICH STRANDS, ANTISENSE, DNA/RNA COMPLEX, DNA-RNA HYBRID synthetic 4K4Z COXSACKIEVIRUS B3 POLYMERASE ELONGATION COMPLEX (R2_MG_FORM) X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.17 synthetic,synthetic,synthetic 4E8V STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN A LIGAND-FREE STATE IN THE PRESENCE OF K+ AND BA2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, METALLOENZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA 4.00 OCEANOBACILLUS IHEYENSIS 1ML5 STRUCTURE OF THE E. COLI RIBOSOMAL TERMINATION COMPLEX WITH RELEASE FACTOR 2 ELECTRON MICROSCOPY 1-14-03 B.P.KLAHOLZ,T.PAPE,A.V.ZAVIALOV,A.G.MYASNIKOV,E.V.ORLOVA, B.VESTERGAARD,M.EHRENBERG,M.VAN HEEL E. COLI, RIBOSOME, TERMINATION OF PROTEIN SYNTHESIS, RELEASE FACTOR, CRYO-ELETRON MICROSCOPY, ANGULAR RECONSTITUTION 14.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2CT8 CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET) AND METHIONYL-ADENYLATE ANOLOGUE X-RAY DIFFRACTION 9-20-05 K.NAKANISHI,Y.OGISO,T.NAKAMA,S.FUKAI,O.NUREKI,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) LIGASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 2.70 synthetic 2DU5 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPLEXED WITH TRNAOPAL AND O-PHOSPHOSERINE ("OPAL COMPLEX") X-RAY DIFFRACTION 3-13-07 R.FUKUNAGA ALPHA4 TETRAMER, LIGASE/RNA COMPLEX 3.20 synthetic 1C9S CRYSTAL STRUCTURE OF A COMPLEX OF TRP RNA-BINDING ATTENUATION PROTEIN WITH A 53-BASE SINGLE STRANDED RNA CONTAINING ELEVEN GAG TRIPLETS SEPARATED BY AU DINUCLEOTIDES X-RAY DIFFRACTION 9-15-99 A.A.ANTSON,E.J.DODSON,G.G.DODSON,R.B.GREAVES,X.-P.CHEN, P.GOLLNICK TRAP, PROTEIN-RNA COMPLEX, TRANSCRIPTION, SINGLE STRANDED RNA, RNA BINDING PROTEIN/RNA COMPLEX 1.90 synthetic 2YU9 RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH UTP X-RAY DIFFRACTION 4-24-07 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.40 synthetic 4AQY STRUCTURE OF RIBOSOME-APRAMYCIN COMPLEXES X-RAY DIFFRACTION 7-18-12 T.MATT,C.L.NG,K.LANG,S.H.SHA,R.AKBERGENOV,D.SHCHERBAKOV,M.MEYER, S.DUSCHA,J.XIE,S.R.DUBBAKA,D.PEREZ-FERNANDEZ,A.VASELLA, V.RAMAKRISHNAN,J.SCHACHT,E.C.BOTTGER RIBOSOME, APRAMYCIN, TOXICITY 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3UZM CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX WITH PAROMOMYCIN X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 3FIH TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME. THIS ENTRY CONSISTS OF THE 30S SUBUNIT, TRNAS AND THE TERNARY COMPLEX. ELECTRON MICROSCOPY 3-03-09 E.VILLA,J.SENGUPTA,L.G.TRABUCO,J.LEBARRON,W.T.BAXTER, T.R.SHAIKH,R.A.GRASSUCCI,P.NISSEN,M.EHRENBERG,K.SCHULTEN, J.FRANK RIBOSOME, TERNARY COMPLEX, FLEXIBLE FITTING, CRYO-EM, 30S, 50S, TRNA, MRNA, EF-TU, 70S, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE, CELL MEMBRANE, CYTOPLASM, ELONGATION FACTOR, GTP-BINDING, MEMBRANE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN BIOSYNTHESIS 6.70 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic,ESCHERICHIA COLI,synthetic 1WWG NMR STRUCTURE DETERMINED FOR MLV NC COMPLEX WITH RNA SEQUENCE UAUCUG SOLUTION NMR 4-05-05 A.DEY,D.YORK,A.SMALLS-MANTEY,M.F.SUMMERS HYDROPHOBIC GUANOSINE BINDING POCKET, VIRAL PROTEIN/RNA COMPLEX MOLONEY MURINE LEUKEMIA VIRUS 3D2X STRUCTURE OF THE THIAMINE PYROPHOSPHATE-SPECIFIC RIBOSWITCH BOUND TO OXYTHIAMINE PYROPHOSPHATE X-RAY DIFFRACTION 7-01-08 S.THORE,C.FRICK,N.BAN RNA, STRUCTURE, RIBOSWITCH, THIAMINE PYROPHOSPHATE, OXYTHIAMINE PYROPHOSPHATE, ANTIBIOTIC, DRUGS, COMPLEX 2.50 ARABIDOPSIS THALIANA 484D SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX SOLUTION NMR 10-14-99 X.YE,A.A.GORIN,R.FREDERICK,W.HU,A.MAJUMDAR,W.XU,G.MCLENDON, A.ELLINGTON,D.J.PATEL HIV-1 REV PEPTIDE; RNA APTAMER; BOUND PEPTIDE SECONDARY STRUCTURE, PEPTIDE- BINDING RNA, TERTIARY ARCHITECTURES, ADAPTIVE-BINDING, RNA BINDING PROTEIN/RNA COMPLEX synthetic 405D STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES X-RAY DIFFRACTION 1-13-99 M.SUNDARALINGAM B.PAN,S.N.MITRA A-RNA DOUBLE HELIX 2.50 synthetic 5MSF MS2 PROTEIN CAPSID/RNA COMPLEX X-RAY DIFFRACTION 11-11-98 S.ROWSELL,N.J.STONEHOUSE,M.A.CONVERY,C.J.ADAMS, A.D.ELLINGTON,I.HIRAO,D.S.PEABODY,P.G.STOCKLEY, S.E.V.PHILLIPS CAPSID PROTEIN MS2/RNA APTAMER COMPLEX, RNA-PROTEIN COMPLEX, RNA STEM LOOP, BACTERIOPHAGE MS2, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.80 ENTEROBACTERIO PHAGE MS2 2VAZ MODEL OF THE S15-MRNA COMPLEX FITTED INTO THE CRYO-EM MAP OF THE 70S ENTRAPMENT COMPLEX. ELECTRON MICROSCOPY 10-02-07 S.MARZI,A.G.MYASNIKOV,A.SERGANOV,C.EHRESMANN,P.ROMBY, M.YUSUPOV,B.P.KLAHOLZ TRANSLATION, PLATFORM-BINDING CENTER, GENE EXPRESSION REGULATION, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, PROTEIN SYNTHESIS, TRANSLATION INITIATION, RIBOSOME, RIBOSWITCH, RNA-BINDING, RRNA-BINDING, RNA PSEUDOKNOT, MRNA STRUCTURE, REPRESSOR PROTEIN 10.00 ESCHERICHIA COLI 3CC7 STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION C2487U X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL ANISOMYCIN RESISTANCE, C2487U, LARGE RIBOSOMAL SUBUNIT, 23S RRNA, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC- FINGER, ACETYLATION, RIBOSOME 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3DLL THE OXAZOLIDINONE ANTIBIOTICS PERTURB THE RIBOSOMAL PEPTIDYL-TRANSFERASE CENTER AND EFFECT TRNA POSITIONING X-RAY DIFFRACTION 9-16-08 D.N.WILSON,F.SCHLUENZEN,J.M.HARMS,A.L.STAROSTA,S.R.CONNELL, P.FUCINI RIBOSOME, ANTIBIOTIC, OXAZOLIDINONE, LINEZOLID, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC, ZINC-FINGER 3.50 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 2KDQ SIMULTANEOUS RECOGNITION OF HIV-1 TAR RNA BULGE AND LOOP SEQUENCES BY CYCLIC PEPTIDE MIMIC OF TAT PROTEIN SOLUTION NMR 6-23-09 A.DAVIDSON,T.C.LEEPER,G.VARANI NMR, PEPTIDOMIMETICS, PEPTIDE STRUCTURE, RNA RECOGNITION, IMMUNODEFICIENCY VIRUS, TAR RNA, MIMIC OF RNA BINDING PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX synthetic 1MNX THE SOLUTION STRUCTURE OF THE LOOP E REGION OF THE 5S RRNA FROM SPINACH CHLOROPLASTS. SOLUTION NMR 1-14-03 P.VALLURUPALLI,P.B.MOORE LOOP E, 5S RRNA SPINACIA OLERACEA 3RC8 HUMAN MITOCHONDRIAL HELICASE SUV3 IN COMPLEX WITH SHORT RNA FRAGMENT X-RAY DIFFRACTION 5-11-11 Z.DAUTER,R.JEDRZEJCZAK,M.DAUTER,J.WANG,R.SZCZESNY,P.STEPIEN HELICAASE, SUV3, MITOCHONDRIA, RNA, HELICASE, HYDROLASE-RNA COMPLEX 2.90 synthetic 1QZC COORDINATES OF S12, SH44, LH69 AND SRL SEPARATELY FITTED INTO THE CRYO-EM MAP OF EF-TU TERNARY COMPLEX (GDP.KIRROMYCIN) BOUND 70S RIBOSOME ELECTRON MICROSCOPY 11-04-03 M.VALLE,A.ZAVIALOV,W.LI,S.M.STAGG,J.SENGUPTA,R.C.NIELSEN, P.NISSEN,S.C.HARVEY,M.EHRENBERG,J.FRANK RIBOSOMAL PROTEIN, RRNA, RNA BINDING PROTEIN/RNA COMPLEX 9.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2RE8 GLUTAMINYL-TRNA SYNTHETASE MUTANT C229R WITH BOUND ANALOG 5'-O-[N-(L-GLUTAMYL)-SULFAMOYL]ADENOSINE X-RAY DIFFRACTION 1-15-08 T.L.BULLOCK,J.J.PERONA PROTEIN-RNA COMPLEX, AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, CYTOPLASM, LIGASE, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE/RNA COMPLEX 2.60 ESCHERICHIA COLI 2PXU VARIANT 16 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.50 ESCHERICHIA COLI 2ET4 COMPLEX BETWEEN NEOMYCIN B AND THE 16S-RRNA A-SITE X-RAY DIFFRACTION 12-13-05 E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.40 synthetic 3DG0 COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF EF-G-BOUND TRANSLOCATION COMPLEX ELECTRON MICROSCOPY 2-03-09 H.GAO,J.LEBARRON,J.FRANK RIBOSOME EF-G RATCHET MOTION 10.80 ESCHERICHIA COLI,ESCHERICHIA COLI 2WDI STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN METHYLATION, TRANSLATION, PAROMOMYCIN, TRNA-BINDING, TRNA, ZINC, MRNA, RIBOSOME, REPRESSOR, RNA-BINDING, RIBONUCLEOPROTEIN, TRANSLATION REGULATION, RRNA-BINDING, METAL-BINDING, RIBOSOMAL PROTEIN 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3J13 STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (30S RIBOSOME OF CLASS 3 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 13.10 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2JQ7 MODEL FOR THIOSTREPTON BINDING TO THE RIBOSOMAL L11-RNA SOLUTION NMR 7-03-07 H.R.A.JONKER,S.ILIN,S.K.GRIMM,J.WOEHNERT,H.SCHWALBE L11, RNA, THIOSTREPTON, RIBOSOME, THIAZOLE, ANTIBIOTIC, STRUCTURAL PROTEIN/RNA/ANTIBIOTIC COMPLEX synthetic 4KBT S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-II CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS 30S RIBOSOMAL SUBUNIT A. THE FULL ASYMMETRIC UNIT ALSO CONTAINS PDB ENTRIES 4KBU (50S SUBUNIT A), 4KBV (30S SUBUNIT B), AND 4KBW (50S SUBUNIT B). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.86 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 1I3Y SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA. SOLUTION NMR 4-04-01 J.D.PUGLISI,S.C.BLANCHARD A LOOP, A SITE, 23S RRNA synthetic 2Y0X THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3J37 TETRACYCLINE RESISTANCE PROTEIN TET(O) BOUND TO THE RIBOSOME ELECTRON MICROSCOPY 4-03-13 W.LI,G.C.ATKINSON,N.S.THAKOR,U.ALLAS,C.LU,K.Y.CHAN,T.TENSON, K.SCHULTEN,K.S.WILSON,V.HAURYLIUK,J.FRANK S RIBOSOME, ANTIBIOTIC RESISTANCE, RIBOSOME 9.80 ESCHERICHIA COLI,ESCHERICHIA COLI 1B2M THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. X-RAY DIFFRACTION 3-25-99 R.K.ARNI,L.WATANABE,R.J.WARD,R.J.KREITMAN,K.KUMAR,F.G.WALZ JR. HYDROLASE, ENDORIBONUCLEASE, HYDROLASE/RNA 2.00 synthetic 1LDZ SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, 25 STRUCTURES SOLUTION NMR 11-25-98 C.G.HOOGSTRATEN,P.LEGAULT,A.PARDI CATALYTIC RNA, INTERNAL LOOPS, LEADZYME, NMR SPECTROSCOPY, RNA STRUCTURE synthetic 1F5G THE G7(SYN)-G4(ANTI) STRUCTURE OF R(GCAGGCGUGC)2 SOLUTION NMR 6-26-00 M.E.BURKARD,D.H.TURNER GUANINE-GUANINE, GG MISMATCH, CONFORMATIONAL EXCHANGE, BASE FLIPPING, SYN GLYCOSIDIC TORSION, RNA synthetic 3I1Q CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE 3.81 ESCHERICHIA COLI,synthetic,synthetic 4KJ7 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 3DIM CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE, CS+ SOAK X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 2.90 synthetic 2GM0 LINEAR DIMER OF STEMLOOP SL1 FROM HIV-1 SOLUTION NMR 4-25-06 N.B.ULYANOV,A.MUJEEB,Z.DU,M.TONELLI,T.G.PARSLOW,T.L.JAMES LINEAR DIMER, A-RICH INTERNAL LOOP, G-RICH INTERNAL LOOP synthetic 2JXQ NMR STRUCTURE OF RNA DUPLEX SOLUTION NMR 5-20-08 L.POPENDA,R.W.ADAMIAK,Z.GDANIEC RNA, DUPLEX, A-TYPE synthetic,synthetic 2IZN MS2-RNA HAIRPIN (G-10) COMPLEX X-RAY DIFFRACTION 7-27-06 C.HELGSTRAND,E.GRAHN,T.MOSS,N.J.STONEHOUSE,K.TARS, P.G.STOCKLEY,L.LILJAS VIRUS/RNA, 3D-STRUCTURE, CAPSID, CAPSID PROTEIN, COMPLEX (CAPSID PROTEIN/RNA HAIRPIN), HAIRPIN, LEVIVIRUS, RNA-BINDING, STRUCTURAL PROTEIN, VIRUS/VIRAL PROTEIN/RNA, VIRUS 2.56 ENTEROBACTERIO PHAGE MS2 3Q0L CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH P38ALPHA NREA X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.50 synthetic 1ZJW GLUTAMINYL-TRNA SYNTHETASE COMPLEXED TO GLUTAMINE AND 2'DEOXY A76 GLUTAMINE TRNA X-RAY DIFFRACTION 6-07-05 I.GRUIC-SOVULJ,N.UTER,T.BULLOCK,J.J.PERONA PROTEIN-RNA COMPLEX, LIGASE/RNA COMPLEX 2.50 synthetic 3MDI CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FACTOR IM IN COMPLEX WITH RNA UGUAAA X-RAY DIFFRACTION 6-02-10 Q.YANG,G.M.GILMARTIN,S.DOUBLIE CPSF5, CF IM, MRNA PROCESSING, CLEAVAGE FACTOR, NUDIX PROTEIN, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN, RNA BINDING-RNA COMPLEX 2.07 synthetic 3BSX CRYSTAL STRUCTURE OF HUMAN PUMILIO 1 IN COMPLEX WITH PUF5 RNA X-RAY DIFFRACTION 4-08-08 Y.K.GUPTA,D.T.NAIR,R.P.WHARTON,A.K.AGGARWAL PROTEIN-RNA COMPLEX, ALTERNATIVE SPLICING, CYTOPLASM, PHOSPHOPROTEIN, RNA-BINDING, TRANSLATION REGULATION, RNA BINDING PROTEIN/RNA COMPLEX 2.32 HOMO SAPIENS 2VHM STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4) X-RAY DIFFRACTION 2-26-08 R.BINGEL-ERLENMEYER,R.KOHLER,G.KRAMER,A.SANDIKCI,S.ANTOLIC, T.MAIER,C.SCHAFFITZEL,B.WIEDMANN,B.BUKAU,N.BAN TRANSLATION, PEPTIDE DEFORMYLASE, RNA-PROTEIN COMPLEX, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, 50S RIBOSOMAL SUBUNIT, ANTIBIOTIC RESISTANCE, RIBOSOME, NASCENT CHAIN PROCESSING, RNA-BINDING, TRANSLATION REGULATION, TRNA BINDING, PROTEIN BIOSYNTHESIS 3.74 ESCHERICHIA COLI,ESCHERICHIA COLI 4GV3 STRUCTURES OF LASSA AND TACARIBE VIRAL NUCLEOPROTEINS WITH OR WITHOUT 5 TRIPHOSPHATE DSRNA SUBSTRATE REVEAL A UNIQUE 3 -5 EXORIBONUCLEASE MECHANISM TO SUPPRESS TYPE I INTERFERON PRODUCTION X-RAY DIFFRACTION 5-01-13 X.JIANG,Q.HUANG,W.WANG,H.DONG,H.LY,Y.LIANG,C.DONG DDEDH FAMILY, 3'-5'EXORIBONUCLEASE, RNA BINDING PROTEIN-RNA COMPLEX 1.68 synthetic,synthetic 3B91 MINIMALLY HINGED HAIRPIN RIBOZYME INCORPORATES ADE38(2AP) AND 2',5'-PHOSPHODIESTER LINKAGE MUTATIONS AT THE ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME; 2'5' PHOSPHODIESTER; RNA; 2-AMINOPURINE 2.75 synthetic,synthetic,synthetic 1BVJ HIV-1 RNA A-RICH HAIRPIN LOOP SOLUTION NMR 12-09-98 E.V.PUGLISI,J.D.PUGLISI HIV-1 GENOMIC RNA, REVERSE TRANSCRIPTASE INITIATION, RNA HAIRPIN LOOP HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 1HS3 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAUU AS PART OF HAIRPIN R(GCGUUAAUUCGCA) SOLUTION NMR 9-02-03 H.ZHANG,M.CULYBA,H.VOLKMAN,T.R.KRUGH RIBONUCLEIC ACID, HAIRPIN LOOP, RNA STRUCTURE synthetic 3IE1 CRYSTAL STRUCTURE OF H380A MUTANT TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH RNA X-RAY DIFFRACTION 8-04-09 H.ISHIKAWA,N.NAKAGAWA,S.KURAMITSU,S.YOKOYAMA,R.MASUI,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) METALLO BETA LACTAMASE FOLD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CYTOPLASM, ENDONUCLEASE, METAL-BINDING, NUCLEASE, RNA-BINDING, RRNA PROCESSING, ZINC, HYDROLASE/RNA COMPLEX 2.85 synthetic 1SI3 CRYSTAL STRUCTURE OF THE PAZ DOMAIN OF HUMAN EIF2C1 IN COMPLEX WITH A 9-MER SIRNA-LIKE DUPLEX X-RAY DIFFRACTION 5-25-04 K.YE,J.B.MA,D.PATEL PROTEIN-RNA COMPLEX, RNA INTERFERENCE, DOUBLE HELIX, OVERHANG, GENE REGULATION/RNA COMPLEX 2.60 synthetic 4FAU STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF LI+, MG2+ AND 5'-EXON X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, SPLICEOSOME, RNA 2.87 OCEANOBACILLUS IHEYENSIS 3AHU CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH AN RNA APTAMER. X-RAY DIFFRACTION 7-13-11 S.BABA,T.SOMEYA,T.KUMASAKA,G.KAWAI,K.NAKAMURA SM-LIKE MOTIF, PROTEIN-RNA COMPLEX, TRANSLATION-RNA COMPLEX 2.20 synthetic 2QP1 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN AND NEOMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI,ESCHERICHIA COLI 2FY1 A DUAL MODE OF RNA RECOGNITION BY THE RBMY PROTEIN SOLUTION NMR 2-06-07 L.SKRISOVSKA,C.BOURGOIS,R.STEFL,L.KISTER,P.WENTER,D.ELLIOT, J.STEVENIN,F.H.T.ALLAIN RNA BINDING PROTEIN, STRUCTURE, PROTEIN-RNA COMPLEX, RNA STEM-LOOP, STRUCTURAL PROTEIN/RNA COMPLEX HOMO SAPIENS 4A36 STRUCTURE OF DUCK RIG-I HELICASE DOMAIN BOUND TO 19-MER DSRNA AND ATP TRANSITION STATE ANALOGUE X-RAY DIFFRACTION 10-19-11 E.KOWALINSKI,T.LUNARDI,A.A.MCCARTHY,S.CUSACK RNA BINDING PROTEIN-RNA COMPLEX, SUPERFAMILY 2 RNA HELICASE, ATP AND DSRNA BINDING, ANTIVIRAL SIGNALLING PATHWAY 3.70 SYNTHETIC CONSTRUCT,SYNTHETIC CONSTRUCT 2XG1 STRUCTURE OF CYTOTOXIC DOMAIN OF COLICIN E3 BOUND TO THE 70S RIBOSOME (PART 3 OF 4) X-RAY DIFFRACTION 9-22-10 C.L.NG,K.LANG,N.A.G.MEENAN,A.SHARMA,A.C.KELLEY,C.KLEANTHOUS, V.RAMAKRISHNAN RIBOSOME 3.20 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 2MEQ STRUCTURE OF HELIX 69 FROM ESCHERICHIA COLI 23S RIBOSOMAL RNA SOLUTION NMR 1-01-14 J.JIANG,R.ADURI,C.S.CHOW,J.SANTALUCIA HELIX 69, RIBOSOMAL, RNA synthetic 2HGJ CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGJ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGI. X-RAY DIFFRACTION 11-07-06 L.JENNER,G.YUSUPOVA,B.REES,D.MORAS,M.YUSUPOV RIBOSOME, NO-TEMPLATE, CODON-MIMICRY 5.00 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3Q50 STRUCTURAL ANALYSIS OF A CLASS I PREQ1 RIBOSWITCH APTAMER IN THE METABOLITE-BOUND STATE X-RAY DIFFRACTION 5-18-11 J.L.JENKINS,J KRUCINSKA,J.E.WEDEKIND PREQ1, PREQ0, RNA, RIBOSOMAL BINDING SITE, APTAMER, METABOLITE, PSEUDOKNOT, H-TYPE, RIBOSWITCH 2.75 synthetic 1TFW HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE X-RAY DIFFRACTION 8-10-04 Y.XIONG,T.A.STEITZ CCA-ADDING COMPLEX, ATP, TRANSFERASE/RNA COMPLEX 2.20 synthetic,synthetic,synthetic,synthetic 1G2E CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE TUMOR NECROSIS FACTOR ALPHA RNA X-RAY DIFFRACTION 2-05-01 X.WANG,T.M.T.HALL PROTEIN-RNA COMPLEX, HUD, AU-RICH ELEMENT, TUMOR NECROSIS FACTOR, TRANSCRIPTION/RNA COMPLEX 2.30 synthetic 2K63 NMR SOLUTION STRUCTURE OF THE D3'-HAIRPIN INCLUDING THE EXON BINDING SITE 1 (EBS1) OF THE GROUP II INTRON SC.AI5(GAMMA) SOLUTION NMR 7-14-09 D.KRUSCHEL,R.K.O.SIGEL GROUP II INTRON, RIBOZYME, SPLICING, EXON BINDING SITE 1, EBS1, METAL ION, MAGNESIUM, RNA 29-MER, HAIRPIN, NMR synthetic 1JBR CRYSTAL STRUCTURE OF THE RIBOTOXIN RESTRICTOCIN AND A 31- MER SRD RNA INHIBITOR X-RAY DIFFRACTION 10-26-01 X.YANG,T.GERCZEI,L.GLOVER,C.C.CORRELL PROTEIN-RNA INTERACTION, SPECIFIC RECOGNITION, RESTRICTOCIN, RIBOSOMAL RNA, SARCIN/RICIN DOMAIN, BASE FLIPPING, HYDROLASE/RNA COMPLEX 2.15 synthetic,synthetic,synthetic 1YL4 CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS. 30S SUBUNIT. THE COORDINATES FOR THE 50S SUBUNIT ARE IN THE PDB ENTRY 1YL3 X-RAY DIFFRACTION 4-12-05 L.JENNER,P.ROMBY,B.REES,C.SCHULZE-BRIESE,M.SPRINGER, C.EHRESMANN,B.EHRESMANN,D.MORAS,G.YUSUPOVA,M.YUSUPOV RIBOSOME, MRNA, TRANSLATIONAL OPERATOR 5.50 THERMUS THERMOPHILUS HB8,synthetic,THERMUS THERMOPHILUS HB8 3G0H HUMAN DEAD-BOX RNA HELICASE DDX19, IN COMPLEX WITH AN ATP- ANALOGUE AND RNA X-RAY DIFFRACTION 2-17-09 T.KARLBERG,L.LEHTIO,R.COLLINS,C.H.ARROWSMITH,H.BERGLUND, C.BOUNTRA,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES, S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON,I.JOHANSSON, T.KOTENYOVA,M.MOCHE,M.E.NILSSON,P.NORDLUND,T.NYMAN, C.PERSSON,J.SAGEMARK,P.SCHUTZ,M.I.SIPONEN,A.G.THORSELL, L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA, H.SCHULER,STRUCTURAL GENOMICS CONSORTIUM (SGC) PROTEIN-RNA COMPLEX, DBP5, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, ALTERNATIVE SPLICING, ATP-BINDING, CYTOPLASM, HELICASE, HYDROLASE, MEMBRANE, MRNA TRANSPORT, NUCLEAR PORE COMPLEX, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, PROTEIN TRANSPORT, RNA- BINDING, TRANSLOCATION, TRANSPORT, POLYURACIL, HYDROLASE/RNA COMPLEX 2.70 synthetic 4AL5 CRYSTAL STRUCTURE OF THE CSY4-CRRNA PRODUCT COMPLEX X-RAY DIFFRACTION 6-13-12 R.E.HAURWITZ,S.H.STERNBERG,J.A.DOUDNA HYDROLASE-RNA COMPLEX, CRISPR 2.00 PSEUDOMONAS AERUGINOSA 3I1N CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, ACETYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN 3.19 ESCHERICHIA COLI K-12,ESCHERICHIA COLI K-12 2JYJ RE-REFINING THE TETRALOOP-RECEPTOR RNA-RNA COMPLEX USING NMR-DERIVED RESTRAINTS AND XPLOR-NIH (2.18) SOLUTION NMR 10-07-08 X.ZUO,J.WANG,T.R.FOSTER,C.D.SCHWIETERS,D.M.TIEDE, S.E.BUTCHER,Y.WANG RNA STRUCTURE, RNA/RNA COMPLEX, TETRALOOP-RECEPTOR, GAAA- TETRALOOP, RNA GLOBAL STRUCTURE synthetic 1YJW CRYSTAL STRUCTURE OF QUINUPRISTIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-26-05 D.TU,G.BLAHA,P.B.MOORE,T.A.STEITZ QUINUPRISTIN, ANTIBIOTIC COMPLEXES, MUTATED 50S SUBUNITS, RIBOSOME 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1YNG NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEMENTARY FACTOR SOLUTION NMR 2-08-05 C.MARIS,J.MASSE,F.H.ALLAIN,A.CHESTER,N.NAVARATNAM RNA EDITING; APOB MRNA; APOBEC1; ACF; NMR STRUCTURE synthetic 1YRJ CRYSTAL STRUCTURE OF APRAMYCIN BOUND TO A RIBOSOMAL RNA A SITE OLIGONUCLEOTIDE X-RAY DIFFRACTION 6-07-05 Q.HAN,Q.ZHAO,S.FISH,K.B.SIMONSEN,D.VOURLOUMIS,J.M.FROELICH, D.WALL,T.HERMANN RNA COMPLEX, APRAMYCIN-RNA COMPLEX, MOLECULAR RECOGNITION, CRYSTAL STRUCTURE 2.70 synthetic 1R7W NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUCCCU BULGE SOLUTION NMR 5-25-04 Z.DU,N.B.ULYANOV,J.YU,T.L.JAMES STEM-AND-LOOP STRUCTURE, SIX-NUCLEOTIDE BULGE, GUGA TETRALOOP, RNA synthetic 3QJP AN RAMP PROTEIN BINDING DIFFERENT RNA SUBSTRATES X-RAY DIFFRACTION 2-08-12 R.WANG,H.ZHENG,G.PREAMPLUME,H.LI FERRIDOXIN-FOLD, WORK IN IMMUNE SYSTEM IN PROKARYOTES, IMMUNE SYSTEM- RNA COMPLEX 3.30 synthetic 3KNO THE STRUCTURES OF CAPREOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE II X-RAY DIFFRACTION 2-16-10 R.E.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, CAPREOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.45 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 2WRJ THE STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE POST-TRANSLOCATIONAL STATE (PART 2 OF 4). X-RAY DIFFRACTION 10-20-09 Y.-G.GAO,M.SELMER,C.M.DUNHAM,A.WEIXLBAUMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOME, ELONGATION FACTOR G, TRANSLOCATION, TRANSLATION, PROTEIN SYNTHESIS 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3J19 STRUCTURE OF THE BACTERIAL RIBOSOME COMPLEXED BY TMRNA-SMPB AND EF-G DURING TRANSLOCATION AND MLD-LOADING (50S SUBUNIT) ELECTRON MICROSCOPY 5-09-12 D.J.F.RAMRATH,H.YAMAMOTO,K.ROTHER,D.WITTEK,M.PECH,T.MIELKE,J.LOERKE, P.SCHEERER,P.IVANOV,Y.TERAOKA,O.SHPANCHENKO,K.H.NIERHAUS,C.M.T.SPAHN TRANS-TRANSLATION, MLD-LOADING, TRANSLOCATION, RIBOSOME 8.30 ESCHERICHIA COLI,ESCHERICHIA COLI 3S1R RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT 3'-DEOXY RNA SOAKED WITH GTP X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.20 synthetic 1R7Z NMR STRUCTURE OF THE R(GGAGGACAUUCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUUCCU BULGE SOLUTION NMR 5-25-04 Z.DU,N.B.ULYANOV,J.YU,T.L.JAMES STEM-AND-LOOP STRUCTURE, SIX-NUCLEOTIDE BULGE, GUGA TETRALOOP, RNA synthetic 4GAQ ALLOSTERIC CONTROL OF THE RIBOSOME BY SMALL-MOLECULE ANTIBIOTICS X-RAY DIFFRACTION 8-29-12 J.H.D.CATE,A.PULK,S.C.BLANCHARD,L.WANG,M.B.FELDMAN,M.R.WASSERMAN, R.ALTMAN NUCLEIC ACID CONFORMATION, PROTEIN BIOSYNTHESIS, ANTIBIOTIC, NEOMYCIN, AMINOGLYCOSIDE, RRF, RECYCLING, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3U5D THE STRUCTURE OF THE EUKARYOTIC RIBOSOME AT 3.0 A RESOLUTION X-RAY DIFFRACTION 12-21-11 A.BEN-SHEM,N.GARREAU DE LOUBRESSE,S.MELNIKOV,L.JENNER,G.YUSUPOVA, M.YUSUPOV TRANSLATION, RIBOSOME, 40S, 60S, 80S, RIBOSOMAL, RIBOSOMAL RNA, RRNA, RIBOSOMAL PROTEIN, STM1, EUKARYOTIC RIBOSOME, RNA-PROTEIN COMPLEX 3.00 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 2UUB STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN. X-RAY DIFFRACTION 5-15-07 A.WEIXLBAUMER,F.V.MURPHY,A.DZIERGOWSKA,A.MALKIEWICZ, F.A.P.VENDEIX,P.F.AGRIS,V.RAMAKRISHNAN TRNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC-FINGER, TRANSLATION, COILED COIL, PAROMOMYCIN, TRNA, ZINC, MRNA, CMO5U, RIBOSOME, RNA-BINDING, MODIFICATIONS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN 2.9 THERMUS THERMOPHILUS,synthetic,synthetic 3H5Y NOROVIRUS POLYMERASE+PRIMER/TEMPLATE+CTP COMPLEX AT 6 MM MNCL2 X-RAY DIFFRACTION 5-19-09 D.F.ZAMYATKIN,F.PARRA,A.MACHIN,P.GROCHULSKI,K.K.S.NG CALICIVIRUSES, VIRAL RNA POLYMERASE, HYDROLASE, NUCLEOTIDE- BINDING, NUCLEOTIDYLTRANSFERASE, PROTEASE, RNA REPLICATION, RNA-DIRECTED RNA POLYMERASE, THIOL PROTEASE, TRANSFERASE, TRANSFERASE/RNA COMPLEX 1.77 synthetic,synthetic 1RMV RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION FIBER DIFFRACTION 5-15-97 H.WANG,G.STUBBS RIBGRASS MOSAIC VIRUS, TOBAMOVIRUS, RMV CLUSTER, COAT PROTEIN (VIRAL), COMPLEX (COAT PROTEIN/RNA), HELICAL VIRUS, VIRUS/RNA COMPLEX 2.90 RIBGRASS MOSAIC VIRUS 3PYR CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 FROM THE PSIV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1EFS CONFORMATION OF A DNA-RNA HYBRID SOLUTION NMR 3-06-00 V.LARUE,E.HANTZ RNA-DNA HYBRID DUPLEX, DNA/RNA COMPLEX, DNA-RNA HYBRID synthetic 2D3O STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADIODURANS X-RAY DIFFRACTION 12-06-05 F.SCHLUENZEN,D.N.WILSON,H.A.HANSEN,P.TIAN,J.M.HARMS, S.J.MCINNES,R.ALBRECHT,J.BUERGER,S.M.WILBANKS,P.FUCINI RIBOSOME, TRIGGER FACTOR, NASCENT CHAIN, 50S, PROTEIN FOLDING, SRP 3.35 DEINOCOCCUS RADIODURANS 1EBS STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES SOLUTION NMR 7-07-97 R.D.PETERSON,J.FEIGON RIBONUCLEIC ACID, RNA synthetic 1M8Y CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE2-10 RNA X-RAY DIFFRACTION 9-25-02 X.WANG,J.MCLACHLAN,P.D.ZAMORE,T.M.T.HALL PUMILIO-HOMOLOGY DOMAIN, PUF DOMAIN, NANOS RESPONSE ELEMENT, RNA BINDING PROTEIN/RNA COMPLEX 2.60 synthetic 2HHH CRYSTAL STRUCTURE OF KASUGAMYCIN BOUND TO THE 30S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 9-26-06 F.SCHLUENZEN RIBOSOME, 30S, ANTIBIOTICS, INITIATION 3.35 THERMUS THERMOPHILUS HB8 3OFB CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CHLORAMPHENICOL. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, CHLORAMPHENICOL, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.19 ESCHERICHIA COLI 4A4R UNAC TETRALOOPS: TO WHAT EXTENT CAN THEY MIMIC GNRA TETRALOOPS SOLUTION NMR 5-30-12 Q.ZHAO,H.HUANG,U.NAGASWAMY,Y.XIA,X.GAO,G.FOX RNA, EVOLUTION, UMAC TETRALOOP HALOARCULA MARISMORTUI 3EOH REFINED GROUP II INTRON STRUCTURE X-RAY DIFFRACTION 10-28-08 N.TOOR,K.RAJASHANKAR,K.S.KEATING,A.M.PYLE RNA, RIBONUCLEIC ACID, INTRON, GROUP II, EXON 3.12 synthetic,synthetic 2JLU DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA X-RAY DIFFRACTION 11-25-08 D.H.LUO,T.XU,R.P.WATSON,D.S.BECKER,A.SAMPATH,W.JAHNKE, S.S.YEONG,C.H.WANG,S.P.LIM,S.G.VASUDEVAN,J.LESCAR HYDROLASE/RNA, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, VIRAL NUCLEOPROTEIN, ENDOPLASMIC RETICULUM, HELICASE, PROTEASE, HYDROLASE, TRANSFERASE, CLEAVAGE ON PAIR OF BASIC RESIDUES, MULTIFUNCTIONAL ENZYME, TRANSCRIPTION REGULATION, NUCLEOTIDYLTRANSFERASE, NS3 HELICASE STRUCTURE, VIRION, ATPASE, NUCLEUS, MEMBRANE, SECRETED, ATP-BINDING, RNA-BINDING, FLAVIVIRUSES, GLYCOPROTEIN, RNA-DIRECTED RNA POLYMERASE, RNA REPLICATION, SERINE PROTEASE, ENVELOPE PROTEIN, DENGUE VIRUS, METAL-BINDING, TRANSMEMBRANE, TRANSCRIPTION, PHOSPHOPROTEIN, CAPSID PROTEIN 2.04 synthetic 1M1K CO-CRYSTAL STRUCTURE OF AZITHROMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 7-19-02 J.L.HANSEN,J.A.IPPOLITO,N.BAN,P.NISSEN,P.B.MOORE,T.A.STEITZ S, RIBOSOME, AZITHROMYCIN, MACROLIDE, HALOARCULA 3.20 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2KY2 THE STRUCTURE OF RNA INTERNAL LOOPS WITH TANDEM AG PAIRS: 5'UAGG/3'GGAU SOLUTION NMR 6-02-10 N.B.HAMMOND,S.D.KENNEDY,D.H.TURNER TANDEM AG PAIRS, THERMODYNAMICS, IMINO AG PAIR, DUAL SYN GG PAIR, EXTRAHELICAL U, RNA synthetic 2VQF MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING X-RAY DIFFRACTION 4-29-08 S.KURATA,A.WEIXLBAUMER,T.OHTSUKI,T.SHIMAZAKI,T.WADA, Y.KIRINO,K.TAKAI,K.WATANABE,V.RAMAKRISHNAN,T.SUZUKI TRNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC-FINGER, TRANSLATION, COILED COIL, PAROMOMYCIN, TRNA, ZINC, MRNA, CMO5U, RIBOSOME, RNA-BINDING, MODIFIACTIONS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN 2.9 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1IK5 CRYSTAL STRUCTURE OF A 14MER RNA CONTAINING DOUBLE UU BULGES IN TWO CRYSTAL FORMS: A NOVEL U*(AU) INTRAMOLECULAR BASE TRIPLE X-RAY DIFFRACTION 11-09-01 J.DENG,Y.XIONG,C.SUDARSANAKUMAR,K.SHI,M.SUNDARALINGAM X-RAY STRUCTURE, RNA DUPLEX, UU-BULGES, BASE TRIPLE, KINK 1.80 synthetic,synthetic 1F7F SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURES SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, METAL BINDING SITE synthetic 1M5V TRANSITION STATE STABILIZATION BY A CATALYTIC RNA X-RAY DIFFRACTION 10-12-02 P.B.RUPERT,A.P.MASSEY,S.T.SIGURDSSON,A.R.FERRE-D'AMARE HAIRPIN RIBOZYME, CATALYTIC RNA, U1A RNA BINDING PROTEIN 2'3'CYCLIC PHOSPHATE, CLEAVED SUBSTRATE, TRANSLATION/RNA COMPLEX 2.40 synthetic,synthetic,synthetic 3MJ3 CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SELENATE X-RAY DIFFRACTION 5-19-10 J.S.KIEFT,E.CHASE,D.A.COSTANTINO,B.L.GOLDEN RNA PSEUDOKNOT, ANIONS, SELENATE, RNA 3.10 synthetic,synthetic 2Y11 THE CRYSTAL STRUCTURE OF EF-TU AND TRP-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2QBF CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.30 ESCHERICHIA COLI 3F2T CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, IRIDIUM HEXAMINE SOAK. X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG FMN RIBOSWITCH, TRANSCRIPTION, RNA 3.00 synthetic 2OEU FULL-LENGTH HAMMERHEAD RIBOZYME WITH MN(II) BOUND X-RAY DIFFRACTION 2-20-07 M.MARTICK,W.G.SCOTT RIBOZYME, HAMMERHEAD RNA, STEM-LOOP INTERACTION, URIDINE TURN, A-FORM HELIX, MANGANESE, MN 2.00 synthetic,synthetic 1RPU CRYSTAL STRUCTURE OF CIRV P19 BOUND TO SIRNA X-RAY DIFFRACTION 1-13-04 J.M.VARGASON,G.SZITTYA,J.BURGYAN,T.M.T.HALL RNAI, PROTEIN-RNA COMPLEX, RNA DOUBLE HELIX, RNA LENGTH RECOGNITION, RNA BINDING PROTEIN/RNA COMPLEX 2.50 synthetic 2Z9Q TRANSFER RNA IN THE HYBRID P/E STATE ELECTRON MICROSCOPY 10-16-07 J.FRANK,W.LI DISTORTED ANTICODON-STEM-LOOP, TWISTED CCA ARM, RNA 11.70 THERMUS AQUATICUS 3J5S ETTA BINDS TO RIBOSOME EXIT SITE AND REGULATES TRANSLATION BY RESTRICTING RIBOSOME AND TRNA DYNAMICS ELECTRON MICROSCOPY 1-08-14 Y.HASHEM PROTEIN TRANSLATION REGULATION, ABC-F PROTEIN FAMILY, SINGLE-MOLECULE FRET, YJJK, RIBOSOME-TRANSLATION COMPLEX 7.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2TRA RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS X-RAY DIFFRACTION 11-06-87 E.WESTHOF,P.DUMAS,D.MORAS T-RNA, SINGLE STRAND, LOOPS 3.00 SACCHAROMYCES CEREVISIAE 4A2X STRUCTURE OF DUCK RIG-I C-TERMINAL DOMAIN (CTD) WITH 14-MER DSRNA X-RAY DIFFRACTION 10-19-11 E.KOWALINSKI,T.LUNARDI,A.A.MCCARTHY,S.CUSACK RNA BINDING PROTEIN-RNA COMPLEX, SUPERFAMILY 2 RNA HELICASE, ATP AND DSRNA BINDING, ANTIVIRAL SIGNALLING PATHWAY 4.00 SYNTHETIC CONSTRUCT,SYNTHETIC CONSTRUCT 2O44 STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE JOSAMYCIN X-RAY DIFFRACTION 12-04-07 E.PYETAN,D.DARAM,T.AUERBACH-NEVO,A.YONATH RIBOSOME, MACROLIDES, RNA 3.30 DEINOCOCCUS RADIODURANS 2KZL SPECIFIER DOMAIN AND GA MOTIF REGION OF B. SUBTILIS TYRS T BOX LEADER RNA SOLUTION NMR 2-23-11 J.WANG SPECIFIER DOMAIN, LOOP E MOTIF, GA MOTIF, KINK TURN, K-TURN, T BOX RIBOSWITCH, RNA BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 4H5O CRYSTAL STRUCTURE OF RIFT VALLEY FEVER VIRUS NUCLEOCAPSID PROTEIN PENTAMER BOUND TO SINGLE-STRANDED RNA X-RAY DIFFRACTION 11-07-12 D.D.RAYMOND,J.L.SMITH NUCLEOCAPSID PROTEIN, N PROTEIN, RIBONUCLEOPROTEIN, VIRAL NUCLEOPROTEIN, RNA BINDING, VIRUS, RNP, VIRAL PROTEIN-RNA COMPLEX 3.90 synthetic 4IJS CRYSTAL STRUCTURE OF NUCLEOCAPSID PROTEIN ENCODED BY THE PROTOTYPIC MEMBER OF ORTHOBUNYAVIRUS X-RAY DIFFRACTION 4-24-13 B.B.LI,Q.WANG,Z.Y.LOU NUCLEOCAPSID PROTEIN, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 3.20 synthetic 1F6U NMR STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO STEM-LOOP SL2 OF THE PSI-RNA PACKAGING SIGNAL. IMPLICATIONS FOR GENOME RECOGNITION SOLUTION NMR 10-09-00 G.K.AMARASINGHE,R.N.DE GUZMAN,R.B.TURNER,K.J.CHANCELLOR, M.F.SUMMERS HIV-1, RNA, PROTEIN-RNA COMPLEX, NMR, PACKAGING SIGNAL, STRUCTURAL PROTEIN/RNA COMPLEX HUMAN IMMUNODEFICIENCY VIRUS 1 2D1B SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER SOLUTION NMR 11-01-05 S.BABA,K.TAKAHASHI,S.NOGUCHI,H.TAKAKU,Y.KOYANAGI,N.YAMAMOTO, G.KAWAI DIS, HIV-1, RNA, STRUCTURE, NMR synthetic 1ROQ EXTENDING THE FAMILY OF UNCG-LIKE TETRALOOP MOTIFS: NMR STRUCTURE OF A CACG TETRALOOP FROM COXSACKIEVIRUS B3 SOLUTION NMR 5-18-04 Z.DU,J.YU,R.ANDINO,T.L.JAMES RNA TETRA-LOOP synthetic 2BEE COMPLEX BETWEEN PAROMOMYCIN DERIVATIVE JS4 AND THE 16S-RRNA A SITE X-RAY DIFFRACTION 12-20-05 B.FRANCOIS,E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.60 synthetic 2RLU THE THREE DIMENSIONAL STRUCTURE OF THE MOORELLA THERMOACETICA SELENOCYSTEINE INSERTION SEQUENCE RNA HAIRPIN AND ITS INTERACTION WITH THE ELONGATION FACTOR SELB SOLUTION NMR 2-26-08 A.V.BERIBISKY,T.J.TAVARES,A.N.AMBORSKI,M.MOTAMED, A.E.JOHNSON,T.L.MARK,P.E.JOHNSON NMR, RNA STRCUTURE, SELENOCYSTEINE, SELB, PROTEIN-RNA INTERACTIONS synthetic 1JB8 THE CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID REVEALS NOVEL INTERMOLECULAR INTERCALATION X-RAY DIFFRACTION 7-01-03 G.W.HAN,M.L.KOPKA,D.LANGS,R.E.DICKERSON DNA/DNA INTERCALATION, RNA/DNA HYBRID, RNA/DNA POLYPURINE TRACT, DNA/RNA COMPLEX 2.38 synthetic 3J0T STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (50S RIBOSOME OF CLASS2 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 12.10 ESCHERICHIA COLI,ESCHERICHIA COLI 3FTF CRYSTAL STRUCTURE OF A. AEOLICUS KSGA IN COMPLEX WITH RNA AND SAH X-RAY DIFFRACTION 3-24-09 C.TU,X.JI KSGA, ROSSMANN-LIKE FOLD, RNA METHYLTRANSFERASE, MTASE, RNA, ANTIBIOTIC RESISTANCE, METHYLTRANSFERASE, RNA-BINDING, RRNA PROCESSING, S-ADENOSYL-L-METHIONINE, TRANSFERASE, TRANSFERASE/RNA COMPLEX 2.80 synthetic 4A3K RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 7NT DNA-RNA HYBRID X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.50 SYNTHETIC CONSTRUCT 2KXZ THE STRUCTURE OF RNA INTERNAL LOOPS WITH TANDEM AG PAIRS: 5'AAGU/3'UGAA SOLUTION NMR 6-02-10 N.B.HAMMOND,S.D.KENNEDY,D.H.TURNER TANDEM AG PAIRS, THERMODYNAMICS, IMINO AG PAIR, DUAL SYN GG PAIR, EXTRAHELICAL U, RNA synthetic 4EJA CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G299A. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATION, RAM, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME 3.52 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3SLM CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE-5'-MONOPHOSPHATE X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.A.SERGANOV THREE-WAY JUNCTION, RIBOSWITCH, 2'-DEOXY GUANOSINE, RNA 2.70 synthetic 1P85 REAL SPACE REFINED COORDINATES OF THE 50S SUBUNIT FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME ELECTRON MICROSCOPY 6-17-03 H.GAO,J.SENGUPTA,M.VALLE,A KOROSTELEV,N.ESWAR,S.M.STAGG, P.VAN ROEY,R.K.AGRAWAL,S.T.HARVEY,A.SALI,M.S.CHAPMAN,J.FRANK EF-G.GTP-BOUND STATE, RATCHET-LIKE MOVEMENT, REAL-SPACE REFINEMENT, RIBOSOME 12.30 ESCHERICHIA COLI,ESCHERICHIA COLI 3AVU STRUCTURE OF VIRAL RNA POLYMERASE COMPLEX 2 X-RAY DIFFRACTION 1-18-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 2.91 synthetic,synthetic 1UUI NMR STRUCTURE OF A SYNTHETIC SMALL MOLECULE, RBT158, BOUND TO HIV-1 TAR RNA SOLUTION NMR 2-12-04 B.DAVIS,M.AFSHAR,G.VARANI,J.KARN,A.I.H.MURCHIE,G.LENTZEN, M.J.DRYSDALE,A.J.POTTER,J.BOWER,F.ABOUL-ELA HIV-1, TAR RNA, DRUG DESIGN, LIGAND-RNA INTERACTION, RNA BULGE, INHIBITOR HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 2RKJ COCRYSTAL STRUCTURE OF A TYROSYL-TRNA SYNTHETASE SPLICING FACTOR WITH A GROUP I INTRON RNA X-RAY DIFFRACTION 1-08-08 P.J.PAUKSTELIS,J.-H.CHEN,E.CHASE,A.M.LAMBOWITZ,B.L.GOLDEN RNA-PROTEIN COMPLEX, GROUP I INTRON SPLICING FACTOR, AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, LIGASE, MITOCHONDRION, MRNA PROCESSING, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, TRANSIT PEPTIDE, LIGASE/RNA COMPLEX 4.50 NEUROSPORA CRASSA,STAPHYLOCOCCUS PHAGE TWORT 3QGB CRYSTAL STRUCTURE OF FBF-2 R288Y MUTANT IN COMPLEX WITH GLD-1 FBEA X-RAY DIFFRACTION 3-23-11 Y.WANG,C.QIU,Y.Y.KOH,L.OPPERMAN,L.GROSS,T.M.T.HALL,M.WICKENS FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE STACKING, RNA BINDING PROTEIN-RNA COMPLEX 2.40 synthetic 2KF0 NMR STRUCTURE OF U6 ISL AT PH 7.0 SOLUTION NMR 7-21-09 V.VENDITTI,S.E.BUTCHER U6 RNA, STEM LOOP, BULGE, INTERNAL LOOP synthetic 3KNA M296I MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA X-RAY DIFFRACTION 7-07-10 C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE RNA DEPENDENT RNA POLYMERASE, 3D POLYMERASE, FOOT-AND-MOUTH DISEASE VIRUS, RIBAVIRIN, TRANSFERASE-RNA COMPLEX 2.80 synthetic,synthetic 4J7L CRYSTAL STRUCTURE OF MOUSE DXO IN COMPLEX WITH PRODUCT RNA AND TWO MAGNESIUM IONS X-RAY DIFFRACTION 3-27-13 J.H.CHANG,L.TONG DECAPPING, 5'-3' EXORIBONUCLEASE, HYDROLASE, HYDROLASE-RNA COMPLEX 1.80 SYNTHETIC CONSTRUCT 1MY9 SOLUTION STRUCTURE OF A K+ CATION STABILIZED DIMERIC RNA QUADRUPLEX CONTAINING TWO G:G(:A):G:G(:A) HEXADS, G:G:G:G TETRADS AND UUUU LOOPS SOLUTION NMR 10-07-03 H.LIU,A.MATSUGAMI,M.KATAHIRA,S.UESUGI PARALLEL RNA QUADRUPLEX WITH A LOOP, DIMER OF TWO QUADRUPLEXES synthetic 3K5Y CRYSTAL STRUCTURE OF FBF-2/GLD-1 FBEA COMPLEX X-RAY DIFFRACTION 11-03-09 Y.WANG,L.OPPERMAN,M.WICKENS,T.M.T.HALL FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE FLIPPING, BASE STACKING 2.30 synthetic 3MIJ CRYSTAL STRUCTURE OF A TELOMERIC RNA G-QUADRUPLEX COMPLEXED WITH AN ACRIDINE-BASED LIGAND. X-RAY DIFFRACTION 2-16-11 G.W.COLLIE,S.NEIDLE,G.N.PARKINSON QUADRUPLEX, RNA-LIGAND COMPLEX, RNA, TELOMERIC 2.60 synthetic 2O33 SOLUTION STRUCTURE OF U2 SNRNA STEM I FROM S. CEREVISIAE SOLUTION NMR 2-06-07 D.G.SASHITAL,V.VENDITTI,C.A.ANGERS,G.CORNILESCU,S.E.BUTCHER RNA, WOBBLE BASE-PAIRS, U2 SNRNA, RIBONUCLEIC ACID synthetic 1RC7 CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.15 ANGSTROM RESOLUTION X-RAY DIFFRACTION 3-30-04 J.BLASZCZYK,J.GAN,X.JI RIBONUCLEASE III, DS-RNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 2.15 synthetic 1ASY CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP X-RAY DIFFRACTION 5-08-95 M.RUFF,J.CAVARELLI,B.REES,S.KRISHNASWAMY,J.C.THIERRY,D.MORAS COMPLEX (AMINOACYL-TRNA SYNTHASE/TRNA) 2.90 synthetic 3SSF CRYSTAL STRUCTURE OF RNA:DNA DODECAMER CORRESPONDING TO HIV-1 POLYPURINE TRACT, AT 1.6 A RESOLUTION. X-RAY DIFFRACTION 2-08-12 P.DROZDZAL,K.MICHALSKA,R.KIERZEK,L.LOMOZIK,M.JASKOLSKI POLYPURINE TRACT (PPT) OF HIV-1; RNA-DNA HYBRID; REVERSE TRANSCRIPTION, RNA-DNA COMPLEX 1.60 synthetic 4FY2 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 3OV7 HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE IN POSITION 76 OF TRNA X-RAY DIFFRACTION 12-01-10 B.C.PAN,Y.XIONG,T.A.STEITZ PROTEIN-RNA, ROSSMANN FOLD, CCA-ADDING, TRNA, NUCLEOTIDYLTRANSFER, TRANSFERASE-RNA COMPLEX 3.00 synthetic 2RQJ QUADRUPLEX STRUCTURE OF AN RNA APTAMER AGAINST BOVINE PRION PROTEIN SOLUTION NMR 11-17-09 M.KATAHIRA,T.MASHIMA,A.MATSUGAMI,F.NISHIKAWA,S.NISHIKAWA APTAMER, PRION, QUADRUPLEX, RNA synthetic 1S2F AVERAGE SOLUTION STRUCTURE OF A PSEUDO-5'-SPLICE SITE FROM THE NEGATIVE REGULATOR OF SPLICING OF ROUS SARCOMA VIRUS SOLUTION NMR 8-31-04 J.CABELLO-VILLEGAS,K.E.GILES,A.M.SOTO,P.YU,K.L.BEEMON, Y.X.WANG NRS, U1 SNRNP BINDING SITE, 5' SPLICE SITE, RNA synthetic 1A3M PAROMOMYCIN BINDING INDUCES A LOCAL CONFORMATIONAL CHANGE IN THE A SITE OF 16S RRNA, NMR, 20 STRUCTURES SOLUTION NMR 4-29-98 D.FOURMY,S.YOSHIZAWA,J.D.PUGLISI RIBOSOMAL RNA COMPLEX, NMR, DECODING REGION, RNA-LIGAND INTERACTION synthetic,synthetic 1JGP THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY X-RAY DIFFRACTION 7-20-01 G.Z.YUSUPOVA,M.M.YUSUPOV,J.H.D.CATE,H.F.NOLLER RIBOSOME ASSEMBLY, PROTEIN SYNTHESIS, LIFE 7.00 THERMUS THERMOPHILUS,synthetic,synthetic,synthetic 1U3K THE SOLUTION STRUCTURE OF A SUBSTRATE OF ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES SOLUTION NMR 7-12-05 E.C.POLLOCK,P.B.MOORE BULGE-HELIX-BULGE, RNA synthetic 1VOS CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI 3CIY MOUSE TOLL-LIKE RECEPTOR 3 ECTODOMAIN COMPLEXED WITH DOUBLE- STRANDED RNA X-RAY DIFFRACTION 5-06-08 L.LIU,I.BOTOS,Y.WANG,J.N.LEONARD,J.SHILOACH,D.M.SEGAL, D.R.DAVIES LEUCINE RICH REPEAT, LRR, PROTEIN-DSRNA COMPLEX, INNATE IMMUNITY, TLR, DSRNA, GLYCOPROTEIN, IMMUNE RESPONSE, INFLAMMATORY RESPONSE, LEUCINE-RICH REPEAT, MEMBRANE, RECEPTOR, TRANSMEMBRANE, IMMUNE SYSTEM/RNA COMPLEX 3.41 synthetic,MUS MUSCULUS 2E9T FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE RNA DEPENDENT IN COMPLEX WITH A TEMPLATE-PRIMER RNA AND 5F-UTP X-RAY DIFFRACTION 6-26-07 C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO, N.VERDAGUER FOOT-AND-MOUTH DISEASE VIRUS, RNA-DEPENDENT RNA POLYMERASE, 3D POLYMERASE, POLYMERASE, TRANSFERASE/RNA COMPLEX 2.60 synthetic,synthetic 1Y6S HIV-1 DIS(MAL) DUPLEX BA-SOAKED X-RAY DIFFRACTION 12-21-04 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, RNA, METAL IONS 2.90 synthetic 2I7E GAAA TETRALOOOP RECEPTOR COMPLEX WITH ASSOCIATED COBALT HEXAMMINE. SOLUTION NMR 4-03-07 J.H.DAVIS,S.E.BUTCHER GAAA TETRALOOP, 11-NUCLEOTIDE RECEPTOR, RNA TERTIARY STRUCTURE, RIBONUCLEIC ACID synthetic 4KJ0 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME, RIBOSOME- ANTIBIOTIC COMPLEX 2.90 ESCHERICHIA COLI 4ADX THE CRYO-EM STRUCTURE OF THE ARCHAEAL 50S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6 ELECTRON MICROSCOPY 2-08-12 B.J.GREBER,D.BOEHRINGER,V.GODINIC-MIKULCIC,A.CRNKOVIC,M.IBBA, I.WEYGAND-DURASEVIC,N.BAN RIBOSOME, PROTEIN SYNTHESIS 6.60 METHANOTHERMOBACTER THERMAUTOTROPHICUS,METHANOTHERMOBACTER THERMAUTOTROPHICUS,METHANOTHERMOBACTER THERMAUTOTROPHICUS 2H0X PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA, RIBOZYME, PSEUDOKNOT, HELIX 2.30 synthetic,synthetic 2R7R CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (UGUGACC) COMPLEX X-RAY DIFFRACTION 7-29-08 X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 2.60 SIMIAN ROTAVIRUS 1ZIH GCAA RNA TETRALOOP, NMR, 10 STRUCTURES SOLUTION NMR 3-12-97 F.M.JUCKER,H.A.HEUS,P.F.YIP,E.MOORS,A.PARDI RIBONUCLEIC ACID, RNA, TETRALOOPS, GNRA, HAIRPIN synthetic 8DRH HIGH RESOLUTION NMR STRUCTURE OF THE D(GCGTCAGG)R(CCUGACGC) HYBRID, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 5-27-98 M.BACHELIN,G.HESSLER,G.KURZ,J.G.HACIA,P.B.DERVAN,H.KESSLER OLIGONUCLEOTIDE, DNA/RNA HYBRID, DEOXYRIBONUCLEIC ACID/RIBONUCLEIC ACID, DNA-RNA HYBRID synthetic 2ET5 COMPLEX BETWEEN RIBOSTAMYCIN AND THE 16S-RRNA A-SITE X-RAY DIFFRACTION 12-13-05 E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.20 synthetic 1AJU HIV-2 TAR-ARGININAMIDE COMPLEX, NMR, 20 STRUCTURES SOLUTION NMR 12-17-97 A.S.BRODSKY,J.R.WILLIAMSON COMPLEX (RIBONUCLEIC ACID/LIGAND), NMR, TRANSCRIPTIONAL ACTIVATION, PROTEIN-RNA INTERACTIONS synthetic 3UOQ CRYSTAL STRUCTURE OF RELEASE FACTOR RF3 TRAPPED IN THE GTP STATE ON A ROTATED CONFORMATION OF THE RIBOSOME (WITHOUT VIOMYCIN) X-RAY DIFFRACTION 1-11-12 J.ZHOU,L.LANCASTER,S.TRAKHANOV,H.F.NOLLER TYPEII RELEASE FACTOR BINDING WITH RIBOSOME, RIBOSOME 3.70 ESCHERICHIA COLI,synthetic 2ZJP THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 6-17-08 J.M.HARMS,D.N.WILSON,F.SCHLUENZEN,S.R.CONNELL,T.STACHELHAUS, Z.ZABOROWSKA,C.M.T.SPAHN,P.FUCINI RIBOSOME, RIBOSOMAL SUBUNIT, 50S, THIOPEPTIDE ANTIBIOTICS, COMPLEX, TRANSLATIONAL REGULATION, L11, MOLECULAR SWITCH, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC, ZINC-FINGER 3.70 DEINOCOCCUS RADIODURANS 1JWC NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN SOLUTION NMR 3-20-02 E.S.DEJONG,W.F.MARZLUFF,E.P.NIKONOWICZ HAIRPIN, TETRALOOP, 3' STACK, RNA synthetic 4BY1 ELONGATING RNA POLYMERASE II-BYE1 TLD COMPLEX SOAKED WITH AMPCPP X-RAY DIFFRACTION 9-11-13 K.KINKELIN,G.G.WOZNIAK,S.B.ROTHBART,M.LIDSCHREIBER,B.D.STRAHL, P.CRAMER TRANSCRIPTION 3.60 SYNTHETIC CONSTRUCT 1A34 SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX X-RAY DIFFRACTION 4-29-98 S.B.LARSON,J.DAY,A.J.GREENWOOD,A.MCPHERSON WATER STRUCTURE, RNA, VIRUS ASSEMBLY, MACROMOLECULAR INTERACTIONS, SATELLITE TOBACCO MOSAIC VIRUS, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 1.81 synthetic,synthetic 3J59 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN CLASSIC POST- TRANSLOCATION STATE (POST1, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2RFK SUBSTRATE RNA POSITIONING IN THE ARCHAEAL H/ACA RIBONUCLEOPROTEIN COMPLEX X-RAY DIFFRACTION 2-05-08 B.LIANG,S.XUE,R.M.TERNS,M.P.TERNS,H.LI,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) PROTEIN-RNA COMPLEX, ARCHAEAL H/ACA RIBONUCLEOPROTEIN COMPLEX, ISOMERASE, TRNA PROCESSING, RIBOSOME BIOGENESIS, RRNA PROCESSING, ISOMERASE/RNA COMPLEX, STRUCTURAL GENOMICS, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG 2.87 PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS 2L2K SOLUTION NMR STRUCTURE OF THE R/G STEM LOOP RNA-ADAR2 DSRBM2 COMPLEX SOLUTION NMR 10-27-10 F.H.-T.ALLAIN,F.C.OBERSTRASS,R.STEFL AC MISMATCH, RNA EDITING, DSRBM, STEMLOOP, HYDROLASE-RNA COMPLEX HOMO SAPIENS 4KZY RABBIT 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A. X-RAY DIFFRACTION 7-24-13 I.B.LOMAKIN,T.A.STEITZ RIBOSOME, 40S, TRANSLATION INITIATION 7.01 ORYCTOLAGUS CUNICULUS 4DV5 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, A914G, BOUND WITH STREPTOMYCIN X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.68 THERMUS THERMOPHILUS 3IZV STRUCTURAL INSIGHTS INTO COGNATE VS. NEAR-COGNATE DISCRIMINATION DURING DECODING. THIS ENTRY CONTAINS THE SMALL SUBUNIT OF A RIBOSOME PROGRAMMED WITH A NEAR-COGNATE CODON, A/T-SITE TRNA, P-SITE TRNA, MRNA AND EF-TU ELECTRON MICROSCOPY 3-23-11 X.AGIRREZABALA,E.SCHREINER,L.G.TRABUCO,J.LEI,R.F.ORTIZ-MEOZ, K.SCHULTEN,R.GREEN,J.FRANK TRANSLATION, RIBOSOME, TERNARY COMPLEX, TRNA INCORPORATION, CRYOEM, NEAR-COGNATE 10 ESCHERICHIA COLI DH1,ESCHERICHIA COLI DH1,ESCHERICHIA COLI 1ZN1 COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST- TERMINATION COMPLEX ELECTRON MICROSCOPY 6-14-05 N.GAO,A.V.ZAVIALOV,W.LI,J.SENGUPTA,M.VALLE,R.P.GURSKY, M.EHRENBERG,J.FRANK RIBOSOME RECYCLING FACTOR, ELONGATION FACTOR G, 70S, POST- TERMINATION COMPLEX, BIOSYNTHETIC/STRUCTURAL PROTEIN/RNA COMPLEX 14.10 ESCHERICHIA COLI,ESCHERICHIA COLI 2XDD A PROCESSED NON-CODING RNA REGULATES A BACTERIAL ANTIVIRAL SYSTEM X-RAY DIFFRACTION 1-12-11 T.R.BLOWER,X.Y.PEI,F.L.SHORT,P.C.FINERAN,D.P.HUMPHREYS,B.F.LUISI, G.P.C.SALMOND TOXIN-RNA COMPLEX, ABORTIVE INFECTION, PHAGE, TOXIN 3.20 PECTOBACTERIUM ATROSEPTICUM 3B5F CRYSTAL STRUCTURE OF A MINIMALLY HINGED HAIRPIN RIBOZYME INCORPORATING THE ADE38DAP MUTATION AND A 2',5' PHOSPHODIESTER LINKAGE AT THE ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME; 2, 6 DIAMINOPURINE; RNA; 2', 5' PHOSPHODIESTER LINKAGE 2.70 synthetic,synthetic,synthetic 4KIY CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME-ANTIBIOTIC COMPLEX 2.90 ESCHERICHIA COLI 1VC5 CRYSTAL STRUCTURE OF THE WILD TYPE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, IN EDTA SOLUTION X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 3.40 synthetic 4FY6 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 3MEI REGULATORY MOTIF FROM THE THYMIDYLATE SYNTHASE MRNA X-RAY DIFFRACTION 1-26-11 S.DIBROV,J.MCLEAN,T.HERMANN S-TURN, C-C BASE PAIR, RNA 1.97 synthetic 3KNH THE STRUCTURES OF VIOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT FOR MOLECULE I X-RAY DIFFRACTION 2-16-10 R.E.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, VIOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1Y39 CO-EVOLUTION OF PROTEIN AND RNA STRUCTURES WITHIN A HIGHLY CONSERVED RIBOSOMAL DOMAIN X-RAY DIFFRACTION 3-22-05 M.S.DUNSTAN,D.GUHATHAKURTA,D.E.DRAPER,G.L.CONN X-RAY CRYSTAL STRUCTURE, CHOROPLAST-LIKE L11 COMPLEX, RRNA, 23S RNA, STRUCTURAL PROTEIN/RNA COMPLEX 2.80 synthetic 2A64 CRYSTAL STRUCTURE OF BACTERIAL RIBONUCLEASE P RNA X-RAY DIFFRACTION 9-20-05 A.V.KAZANTSEV,A.A.KRIVENKO,D.J.HARRINGTON,S.R.HOLBROOK, P.D.ADAMS,N.R.PACE HYDROLASE, RIBONUCLEASE, RIBOZYME, RNA 3.30 synthetic 3CW1 CRYSTAL STRUCTURE OF HUMAN SPLICEOSOMAL U1 SNRNP X-RAY DIFFRACTION 3-24-09 D.A.POMERANZ KRUMMEL,C.OUBRIDGE,A.K.LEUNG,J.LI,K.NAGAI PRE-MRNA SPLICING, SPLICEOSOME, RNA-BINDING DOMAIN, SM FOLD, ZINC FINGER, RNA RECOGNITION MOTIF, 5' SPLICE SITE 5.49 HOMO SAPIENS 2P7F THE NOVEL USE OF A 2',5'-PHOSPHODIESTER LINKAGE AS A REACTION INTERMEDIATE AT THE ACTIVE SITE OF A SMALL RIBOZYME X-RAY DIFFRACTION 5-22-07 A.T.TORELLI,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME; 2',5' PHOSPHODIESTER; VANADATE; REACTION INTERMEDIATE; TRANSITION-STATE STABILIZATION; ACTIVE SITE WATERS; INDUCED FIT, RNA 2.35 synthetic,synthetic,synthetic,synthetic 2LBJ GLYCYL-TRNA(GCC) ANTICODON STEM-LOOP FROM BACILLUS SUBTILIS SOLUTION NMR 4-04-12 A.T.CHANG,E.P.NIKONOWICZ ANTICODON STEM-LOOP, RNA synthetic 4EJT STAPHYLOCOCCUS EPIDERMIDIS TCAR IN COMPLEX WITH RNA X-RAY DIFFRACTION 6-05-13 Y.M.CHANG,C.K.-M.CHEN,A.H.-J.WANG MARR FAMILY PROTEINS, TCAR, TRANSCRIPTION REGULATOR-RNA COMPLEX 3.00 synthetic 3K64 CRYSTAL STRUCTURE OF FBF-2/FEM-3 PME COMPLEX X-RAY DIFFRACTION 11-03-09 Y.WANG,L.OPPERMAN,M.WICKENS,T.M.T.HALL FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE FLIPPING, BASE STACKING 2.00 synthetic 2LDL SOLUTION NMR STRUCTURE OF THE HIV-1 EXON SPLICING SILENCER 3 SOLUTION NMR 12-28-11 C.MISHLER,J.D.LEVENGOOD,C.A.JOHNSON,P.RAJAN,B.M.ZNOSKO RNA, EXON SPLICING SILENCER HUMAN IMMUNODEFICIENCY VIRUS 1 3CQS A 3'-OH, 2',5'-PHOSPHODIESTER SUBSTITUTION IN THE HAIRPIN RIBOZYME ACTIVE SITE REVEALS SIMILARITIES WITH PROTEIN RIBONUCLEASES X-RAY DIFFRACTION 5-20-08 A.T.TORELLI,R.C.SPITALE,J.KRUCINSKA,J.E.WEDEKIND ',5' PHOSPHODIESTER; HAIRPIN RIBOZYME; REACTION- INTERMEDIATE; TRANSITION-STATE STABILIZATION; RIBONUCLEASE; PHOSPHORYL-TRANSFER, RNA 2.80 synthetic,synthetic 3R1H CRYSTAL STRUCTURE OF THE CLASS I LIGASE RIBOZYME-SUBSTRATE PRELIGATION COMPLEX, C47U MUTANT, CA2+ BOUND X-RAY DIFFRACTION 8-31-11 D.M.SHECHNER,D.P.BARTEL LIGASE RIBOZYME, CATALYTIC RNA, RIBOZYME, RNA BINDING PROTEIN-RNA COMPLEX 3.15 synthetic,synthetic 3IYR TMRNA-SMPB: A JOURNEY TO THE CENTER OF THE BACTERIAL RIBOSOME ELECTRON MICROSCOPY 10-20-10 F.WEIS,P.BRON,E.GIUDICE,J.P.ROLLAND,D.THOMAS,B.FELDEN,R.GILLET TMRNA, SMPB, RIBOSOME, TRANS-TRANSLATION, RIBOSOMAL PROTEIN-RNA COMPLEX 13.00 THERMUS THERMOPHILUS 4G5T CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TIGECYCLINE. THIS ENTRY CONTAINS THE 30S SUBUNIT OF MOLECULE A. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,SYNTHETIC CONSTRUCT 2WWQ E.COLI 70S RIBOSOME STALLED DURING TRANSLATION OF TNAC LEADER PEPTIDE. THIS FILE CONTAINS THE 50S, THE P-SITE TRNA AND THE TNAC LEADER PEPTIDE (PART 2 OF 2). ELECTRON MICROSCOPY 4-14-10 B.SEIDELT,C.A.INNIS,D.N.WILSON,M.GARTMANN,J.ARMACHE,E.VILLA, L.G.TRABUCO,T.BECKER,T.MIELKE,K.SCHULTEN,T.A.STEITZ, R.BECKMANN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, TRANSLATION, ZINC-FINGER, TNAC, 70S RIBOSOME, STALLING, RIBOSOME 5.80 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3PIP CRYSTAL STRUCTURE OF THE SYNERGISTIC ANTIBIOTIC PAIR LANKAMYCIN AND LANKACIDIN IN COMPLEX WITH THE LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 2-23-11 M.J.BELOUSOFF,T.SHAPIRA,A.BASHAN,E.ZIMMERMAN,H.KINASHI,H.ROZENBERG, A.YONATH RIBOSOME, LARGE RIBOSOMAL SUBUNIT, 50S, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, LANKAMYCIN, LANKACIDIN, MACROLIDE, RIBOSOME-ANTIBIOTIC COMPLEX 3.45 DEINOCOCCUS RADIODURANS R1,DEINOCOCCUS RADIODURANS R1 3BBN HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 30S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME. ELECTRON MICROSCOPY 5-13-08 M.R.SHARMA,D.N.WILSON,P.P.DATTA,C.BARAT,F.SCHLUENZEN, P.FUCINI,R.K.AGRAWAL SMALL RIBOSOMAL SUBUNIT, SPINACH CHLOROPLAST RIBOSOME, RIBONUCLEOPROTEIN PARTICLE, MACROMOLECULAR COMPLEX 9.40 SPINACEA OLERACEA 2IX1 RNASE II D209N MUTANT X-RAY DIFFRACTION 10-05-06 C.FRAZAO,C.E.MCVEY,M.AMBLAR,A.BARBAS,C.VONRHEIN, C.M.ARRAIANO,M.A.CARRONDO S1, RNA, CSD, RNB, NUCLEASE, RNASE II, HYDROLASE, RNA- BINDING, EXONUCLEASE 2.74 synthetic 1KOG CRYSTAL STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE INTERACTING WITH THE ESSENTIAL DOMAIN OF ITS MRNA OPERATOR X-RAY DIFFRACTION 4-26-02 A.TORRES-LARRIOS,A.C.DOCK-BREGEON,P.ROMBY,B.REES, R.SANKARANARAYANAN,J.CAILLET,M.SPRINGER,C.EHRESMANN, B.EHRESMANN,D.MORAS PROTEIN-RNA COMPLEX, RNA STEM-LOOP, RNA DOUBLE HELIX, RNA BASE TRIPLES, LIGASE/RNA COMPLEX 3.50 synthetic 1Y3S HIV-1 DIS RNA SUBTYPE F- MPD FORM X-RAY DIFFRACTION 11-08-05 E.ENNIFAR,P.DUMAS RNA, LOOP-LOOP COMPLEX, HIV-1 2.25 synthetic 1PJG RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG X-RAY DIFFRACTION 12-09-03 M.L.KOPKA,L.LAVELLE,G.W.HAN,H.-L.NG,R.E.DICKERSON RNA/DNA HYBRID; POLYPURINE TRACT OF HIV-1; MOLEUCLAR REPLACEMENT; SUGAR CONFORMATION, DNA/RNA COMPLEX, DNA-RNA HYBRID 1.15 synthetic 2OIJ HIV-1 SUBTYPE B DIS RNA EXTENDED DUPLEX AUCL3 SOAKED X-RAY DIFFRACTION 2-13-07 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, METAL IONS, RNA, BULGES 2.31 synthetic 1LNT CRYSTAL STRUCTURE OF THE HIGHLY CONSERVED RNA INTERNAL LOOP OF SRP X-RAY DIFFRACTION 6-03-03 J.DENG,Y.XIONG,B.PAN,M.SUNDARALINGAM SRP, INTERNAL LOOP, MISPAIR, RNA 1.70 synthetic,synthetic 1H4Q PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG), ATP AND PROLINOL X-RAY DIFFRACTION 6-18-01 A.YAREMCHUK,M.TUKALO,S.CUSACK AMINOACYL-TRNA SYNTHETASE, ATP + L-PROLINE + TRNA(PRO) AMP + PPI + L-PROLYL-TRNA(PRO), CLASS II AMINOACYL-TRNA SYNTHETASE 3.0 THERMUS THERMOPHILUS 1I46 THE SOLUTION STRUCTURE OF THE MUTANT STEM LOOP C 5'GUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA SOLUTION NMR 4-21-01 C.-H.KIM,I.TINOCO JR. RNA, TRILOOP, STEM-LOOP, MUTANT, REPLICATION, BMV synthetic 1Y3O HIV-1 DIS RNA SUBTYPE F- MN SOAKED X-RAY DIFFRACTION 11-08-05 E.ENNIFAR,P.DUMAS RNA, LOOP-LOOP COMPLEX, HIV-1 2.70 synthetic 4BYQ CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX ELECTRON MICROSCOPY 11-20-13 I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, S.H.W.SCHERES RIBOSOME, RIBOSOME INITIATION COMPLEX, INITIATOR FACTOR EIF5B, CRYO EM, SINGLE PARTICLE ANALYSIS 4.30 SACCHAROMYCES CEREVISIAE 1CWP STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY X-RAY DIFFRACTION 5-22-95 J.A.SPEIR,J.E.JOHNSON,S.MUNSHI,G.WANG,S.TIMOTHY,T.S.BAKER BROMOVIRUS, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 3.20 COWPEA CHLOROTIC MOTTLE VIRUS,synthetic 4GXY RNA STRUCTURE X-RAY DIFFRACTION 10-17-12 A.SERGANOV,A.PESELIS RNA, RIBOSWITCH, ADENOSYLCOBALAMIN 3.05 synthetic 2A1R CRYSTAL STRUCTURE OF PARN NUCLEASE DOMAIN X-RAY DIFFRACTION 12-20-05 M.WU,H.SONG PARN, DEDD, NUCLEASE DOMAIN, HYDROLASE/RNA COMPLEX 2.60 synthetic 3IZF MODEL OF THE LARGE SUBUNIT RNA BASED ON A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME (WITH ES27L-IN CONFORMATION) ELECTRON MICROSCOPY 12-01-10 J.-P.ARMACHE,A.JARASCH,A.M.ANGER,E.VILLA,T.BECKER,S.BHUSHAN, F.JOSSINET,M.HABECK,G.DINDAR,S.FRANCKENBERG,V.MARQUEZ,T.MIELKE, M.THOMM,O.BERNINGHAUSEN,B.BEATRIX,J.SOEDING,E.WESTHOF,D.N.WILSON, R.BECKMANN EUKARYOTIC RIBOSOME, HOMOLOGY MODELLING, DE NOVO MODELING, RIBOSOMAL RNA, RRNA, RNA EXPANSION SEGMENTS, RIBOSOME 10 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 1I7J CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL AND MAGNESIUM BINDING. X-RAY DIFFRACTION 9-21-01 D.A.ADAMIAK,W.R.RYPNIEWSKI,J.MILECKI,R.W.ADAMIAK X-RAY, 2'-O-MERNA DUPLEX, 2-METHYL-2, 4-PENTANEDIOL, MAGNESIUM, GROOVE HYDRATION AND BINDING 1.19 synthetic 3J2L PROMISCUOUS BEHAVIOR OF PROTEINS IN ARCHAEAL RIBOSOMES REVEALED BY CRYO-EM: IMPLICATIONS FOR EVOLUTION OF EUKARYOTIC RIBOSOMES (50S RIBOSOMAL RNA) ELECTRON MICROSCOPY 11-28-12 J.-P.ARMACHE,A.M.ANGER,V.MARQUEZ,S.FRANKENBERG,T.FROEHLICH,E.VILLA, O.BERNINGHAUSEN,M.THOMM,G.J.ARNOLD,R.BECKMANN,D.N.WILSON ARCHAEA, ARCHAEAL, RIBOSOMAL, 70S, KINK-TURN, PROTEIN SYNTHESIS, RNA, RIBOSOME 6.60 PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS 1HNZ STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B X-RAY DIFFRACTION 2-21-01 D.E.BRODERSEN,W.M.CLEMONS JR.,A.P.CARTER,R.MORGAN-WARREN, B.T.WIMBERLY,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, ANTIBIOTIC, HYGROMYCIN B 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2B3J CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE, TADA, IN COMPLEX WITH RNA X-RAY DIFFRACTION 1-24-06 H.C.LOSEY,A.J.RUTHENBURG,G.L.VERDINE MIXED ALPHA-BETA, PROTEIN-RNA COMPLEX, RNA STEM-LOOP, HYDROLASE/RNA COMPLEX 2.00 synthetic 3V29 CRYSTAL STRUCTURE OF HPF BOUND TO THE 70S RIBOSOME. THIS ENTRY CONTAINS THE 50S SUBUNIT OF THE 2ND MOLECULE IN THE ASU. X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME HIBERNATION FACTOR, YHBH, PROTEIN E, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3HOY COMPLETE RNA POLYMERASE II ELONGATION COMPLEX VI X-RAY DIFFRACTION 7-28-09 J.F.SYDOW,F.BRUECKNER,A.C.M.CHEUNG,G.E.DAMSMA,S.DENGL, E.LEHMANN,D.VASSYLYEV,P.CRAMER RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, DNA-RNA MISMATCH, RNA FRAYING, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID COMPLEX 3.40 synthetic 1UTV THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A RNA MOLECULE CONTAINING UAGAU REPEATS (PART II) X-RAY DIFFRACTION 1-15-04 N.H.HOPCROFT,A.MANFREDO,A.L.WENDT,A.M.BRZOZOWSKI,P.GOLLNICK, A.A.ANTSON RNA BINDING PROTEIN, TRANSCRIPTION ATTENUATION, RNA-BINDING PROTEIN, TRP RNA 1.90 BACILLUS STEAROTHERMOPHILUS 2G32 CRYSTAL STRUCTURE OF AN RNA RACEMATE X-RAY DIFFRACTION 5-30-06 W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL, V.A.ERDMANN DOUBLE HELIX, RACEMATE, RNA 1.30 synthetic,synthetic 2QBA CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.54 ESCHERICHIA COLI,ESCHERICHIA COLI 3SFS CRYSTAL STRUCTURE OF RELEASE FACTOR RF3 TRAPPED IN THE GTP STATE ON A ROTATED CONFORMATION OF THE RIBOSOME X-RAY DIFFRACTION 1-11-12 J.ZHOU,L.LANCASTER,S.TRAKHANOV,H.F.NOLLER TYPEII RELEASE FACTOR BINDING WITH RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX 3.20 synthetic 2RS2 H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR MUSASHI1 RBD1:R(GUAGU) COMPLEX SOLUTION NMR 12-28-11 T.OHYAMA,T.NAGATA,K.TSUDA,T.IMAI,H.OKANO,T.YAMAZAKI,M.KATAHIRA MUSASHI, PROTEIN-RNA COMPLEX, RRM, RBD, RNA BINDING PROTEIN-RNA COMPLEX synthetic 1KQS THE HALOARCULA MARISMORTUI 50S COMPLEXED WITH A PRETRANSLOCATIONAL INTERMEDIATE IN PROTEIN SYNTHESIS X-RAY DIFFRACTION 2-22-02 T.M.SCHMEING,A.C.SEILA,J.L.HANSEN,B.FREEBORN,J.K.SOUKUP, S.A.SCARINGE,S.A.STROBEL,P.B.MOORE,T.A.STEITZ RIBOSOME ASSEMBLY, RNA-RNA, PROTEIN-RNA, PROTEIN-PROTEIN, PROTEIN SYNTHESIS, PEPTIDYL TRANSFERASE 3.10 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic,synthetic 2QBH CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.00 ESCHERICHIA COLI 1EHT THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, 10 STRUCTURES SOLUTION NMR 12-24-97 G.R.ZIMMERMANN,A.PARDI RIBONUCLEIC ACID, RNA synthetic 1MMS CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN L11-RNA COMPLEX X-RAY DIFFRACTION 4-17-00 B.T.WIMBERLY,R.GUYMON,J.P.MCCUTCHEON,S.W.WHITE, V.RAMAKRISHNAN RNA-PROTEIN COMPLEX, RNA, RIBOSOME, TRANSLOCATION, THIOSTREPTON 2.57 synthetic 1YVP RO AUTOANTIGEN COMPLEXED WITH RNAS X-RAY DIFFRACTION 6-07-05 A.J.STEIN,G.FUCHS,C.FU,S.L.WOLIN,K.M.REINISCH HEAT REPEAT; VON WILLEBRAND FACTOR A; ROSSMANN FOLD; MIDAS MOTIF; RNA DUPLEX; SSRNA, RNA BINDING PROTEIN/RNA COMPLEX 2.20 synthetic,synthetic 2OTJ -DEOXYTEDANOLIDE BOUND TO THE LARGE SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-03-07 G.BLAHA,S.J.SCHROEDER,J.TIRADO-RIVES DEOXYTEDANOLIDE, ANTIBIOTIC COMPLEX, 50S, RIBOSOME 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2LI4 SOLUTION STRUCTURE OF A SHORTENED ANTITERMINATOR HAIRPIN FROM A MG2+ RIBOSWITCH SOLUTION NMR 8-22-12 M.M.T.KORTH,R.K.O.SIGEL RNA YERSINIA ENTEROCOLITICA 2XLK CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, ORTHORHOMBIC FORM X-RAY DIFFRACTION 9-22-10 R.E.HAURWITZ,M.JINEK,B.WIEDENHEFT,K.ZHOU,J.A.DOUDNA HYDROLASE-RNA COMPLEX, ENDORIBONUCLEASE, CRISPR 1.80 PSEUDOMONAS AERUGINOSA 1RHT -MER RNA HAIRPIN COAT PROTEIN BINDING SITE FOR BACTERIOPHAGE R17 (NMR, MINIMIZED AVERAGE STRUCTURE) SOLUTION NMR 6-03-95 P.N.BORER,Y.LIN,S.WANG,M.W.ROGGENBUCK,J.M.GOTT, O.C.UHLENBECK,I.PELCZER RNA, NMR, HAIRPIN, BACTERIOPHAGE R17 synthetic 1K8A CO-CRYSTAL STRUCTURE OF CARBOMYCIN A BOUND TO THE 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 7-19-02 J.L.HANSEN,J.A.IPPOLITO,N.BAN,P.NISSEN,P.B.MOORE,T.STEITZ ANTIBIOTIC, CARBOMYCIN A, MACROLIDE, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3IY9 LEISHMANIA TARENTOLAE MITOCHONDRIAL LARGE RIBOSOMAL SUBUNIT MODEL ELECTRON MICROSCOPY 7-07-09 M.R.SHARMA,T.M.BOOTH,L.SIMPSON,D.A.MASLOV,R.K.AGRAWAL LEISHMANIA TARENTOLAE, MITOCHONDRIAL RIBOSOME, CRYOEM, MINIMAL RNA., MITOCHONDRION, POLYMORPHISM, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, TRANSIT PEPTIDE, METHYLATION, RNA-BINDING, RRNA-BINDING, ACETYLATION, ALTERNATIVE SPLICING 14.10 LEISHMANIA TARENTOLAE 1OB2 E. COLI ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC KIRROMYCIN, A GTP ANALOG, AND PHE-TRNA X-RAY DIFFRACTION 5-27-04 O.KRISTENSEN,P.NISSEN,J.NYBORG HYDROLASE/NUCLEAR PROTEIN, HYDROLASE, GTPASE, TRANSLATION ELONGATION FACTOR, TRANSFER RNA 3.35 SACCHAROMYCES CEREVISIAE 1HS4 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA) SOLUTION NMR 9-02-03 H.ZHANG,M.CULYBA,H.VOLKMAN,T.R.KRUGH RIBONUCLEIC ACID, HAIRPIN LOOP, RNA STRUCTURE synthetic 2RDO S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND ELECTRON MICROSCOPY 3-04-08 N.GAO,A.V.ZAVIALOV,M.EHRENBERG,J.FRANK ELONGATION FACTOR G, EF-G, RRF, RIBOSOME RECYCLING FACTOR, GDPNP, 50S SUBUNIT, CRYO-EM, REAL-SPACE REFINEMENT, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN, METAL-BINDING, ZINC, CYTOPLASM, GTP-BINDING, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS 9.10 ESCHERICHIA COLI,ESCHERICHIA COLI 1W2B TRIGGER FACTOR RIBOSOME BINDING DOMAIN IN COMPLEX WITH 50S X-RAY DIFFRACTION 9-02-04 L.FERBITZ,T.MAIER,H.PATZELT,B.BUKAU,E.DEUERLING,N.BAN RIBOSOME, RIBOSOME_ASSOCIATED FACTORS, CHAPERONE, NASCENT CHAIN, COTRANSLATIONAL FOLDING, RNA-BINDING, RIBOSOMAL PROTEIN 3.5 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 433D CRYSTAL STRUCTURE OF A 14 BASE PAIR RNA DUPLEX WITH NONSYMMETRICAL TANDEM G.U WOBBLE BASE PAIRS X-RAY DIFFRACTION 12-04-98 J.TRIKHA,D.J.FILMAN,J.M.HOGLE TANDEM NONSYMMETRICAL G.U WOBBLE BASE PAIR, RNA 2.10 synthetic 1RKJ SOLUTION STRUCTURE OF THE COMPLEX FORMED BY THE TWO N- TERMINAL RNA-BINDING DOMAINS OF NUCLEOLIN AND A PRE-RRNA TARGET SOLUTION NMR 4-27-04 C.JOHANSSON,L.D.FINGER,L.TRANTIREK,T.D.MUELLER,S.KIM, I.A.LAIRD-OFFRINGA,J.FEIGON PROTEIN-RNA COMPLEX, RBD, TRANSCRIPTION/RNA COMPLEX MESOCRICETUS AURATUS 4GV6 STRUCTURES OF LASSA AND TACARIBE VIRAL NUCLEOPROTEINS WITH OR WITHOUT 5 TRIPHOSPHATE DSRNA SUBSTRATE REVEAL A UNIQUE 3 -5 EXORIBONUCLEASE MECHANISM TO SUPPRESS TYPE I INTERFERON PRODUCTION X-RAY DIFFRACTION 5-01-13 X.JIANG,Q.HUANG,W.WANG,H.DONG,H.LY,Y.LIANG,C.DONG DEDDH FAMILY ENZYME, 3'-5' EXONUCLEASE, RNA BINDING PROTEIN-RNA COMPLEX 1.98 synthetic,synthetic 3FS0 CLASS II LIGASE RIBOZYME PRODUCT-TEMPLATE DUPLEX, STRUCTURE 2 X-RAY DIFFRACTION 2-24-09 J.N.PITT,A.R.FERRE-D'AMARE RIBOZYME, LIGASE, 2'-5', 2-5, 2P5, RNA 2.30 synthetic,synthetic 462D CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE X-RAY DIFFRACTION 12-02-99 E.ENNIFAR,M.YUSUPOV,P.WALTER,R.MARQUET,C.EHRESMANN, B.EHRESMANN,P.DUMAS HIV, RNA DUPLEX, MISMATCH, BULGES, MAGNESIUM BINDING 2.30 synthetic 1S1I STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1I, CONTAINS 60S SUBUNIT. THE 40S RIBOSOMAL SUBUNIT IS IN FILE 1S1H. ELECTRON MICROSCOPY 5-25-04 C.M.SPAHN,M.G.GOMEZ-LORENZO,R.A.GRASSUCCI,R.JORGENSEN, G.R.ANDERSEN,R.BECKMANN,P.A.PENCZEK,J.P.G.BALLESTA,J.FRANK S RIBOSOME, 60S RIBOSOMAL SUBUNIT, EEF2, TRNA TRANSLOCATION, SORDARIN, CRYO-EM 11.70 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 3BNQ CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE IN THE PRESENCE OF SRCL2 (A1555G MUTANT, BR-DERIVATIVE) X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 2.00 synthetic,synthetic 2B66 S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF RELEASE FACTOR RF1, TRNAS AND MRNA BOUND TO THE RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT FROM A CRYSTAL STRUCTURE OF RELEASE FACTOR RF1, TRNAS AND MRNA BOUND TO THE RIBOSOME AND IS DESCRIBED IN REMARK 400 X-RAY DIFFRACTION 1-10-06 S.PETRY,D.E.BRODERSEN,F.V.MURPHY IV,C.M.DUNHAM,M.SELMER, M.J.TARRY,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRANSLATION, RELEASE FACTOR 5.90 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS 2C0B CATALYTIC DOMAIN OF E. COLI RNASE E IN COMPLEX WITH 13-MER RNA X-RAY DIFFRACTION 10-14-05 M.J.MARCAIDA,A.J.CALLAGHAN,W.G.SCOTT,B.F.LUISI HYDROLASE, RIBONUCLEASE, RNA TURNOVER, RNA PROCESSING, ENDONUCLEASE, NUCLEASE, RNA-BINDING 3.18 synthetic 4FEO CRYSTAL STRUCTURE OF THE AU25A/A46G/C74U MUTANT XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN IN COMPLEX WITH 2,6-DIAMINOPURINE X-RAY DIFFRACTION 2-27-13 C.D.STODDARD,J.J.TRAUSCH,J.WIDMANN,J.MARCANO,R.KNIGHT,R.T.BATEY THREE-WAY JUNCTION WITH DISTAL TERTIARY INTERACTION, GENETIC REGULATORY ELEMENT, 2,6-DIAMINOPURINE, RNA 1.60 synthetic 3GTM CO-COMPLEX OF BACKTRACKED RNA POLYMERASE II WITH TFIIS X-RAY DIFFRACTION 6-09-09 D.WANG,D.A.BUSHNELL,X.HUANG,K.D.WESTOVER,M.LEVITT, R.D.KORNBERG TRANSCRIPTION, TRANSFERASE, DNA-RNA HYBRID, BACKTRACK, DNA- DIRECTED RNA POLYMERASE, DNA BINDING, ISOPEPTIDE BOND, MAGNESIUM, METAL BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, TRANSCRIPTION REGULATION, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.80 synthetic 2Q1R CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGCGAAUUAGCG, WITH A G-A MISMATCH. X-RAY DIFFRACTION 10-30-07 F.LI,P.S.PALLAN G-A MISMATCH, RNA, RNAI 1.12 engineered 2MI0 NMR STRUCTURE OF THE I-V KISSING-LOOP INTERACTION OF THE NEUROSPORA VS RIBOZYME SOLUTION NMR 1-15-14 P.BOUCHARD,P.LEGAULT NEUROSPORA VS RIBOZYME, KISSING-LOOP INTERACTION, SUBSTRATE RECOGNITION, U-TURN, NMR STRUCTURAL STUDIES, RNA NEUROSPORA,NEUROSPORA 1VSP INTERACTIONS AND DYNAMICS OF THE SHINE-DALGARNO HELIX IN THE 70S RIBOSOME. THIS FILE, 1VSP, CONTAINS THE 50S RIBOSOME SUBUNIT. 30S RIBOSOME SUBUNIT IS IN THE FILE 2QNH X-RAY DIFFRACTION 11-13-07 A.KOROSTELEV,S.TRAKHANOV,H.ASAHARA,M.LAURBERG,H.F.NOLLER S RIBOSOME, SHINE-DALGARNO 3.83 THERMUS THERMOPHILUS HB27,THERMUS THERMOPHILUS HB27 3GTL BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER WITH G<>U MISMATCH X-RAY DIFFRACTION 6-09-09 D.WANG,D.A.BUSHNELL,X.HUANG,K.D.WESTOVER,M.LEVITT, R.D.KORNBERG TRANSCRIPTION, TRANSFERASE, DNA-RNA HYBRID, BACKTRACK, DNA- DIRECTED RNA POLYMERASE, DNA BINDING, ISOPEPTIDE BOND, MAGNESIUM, METAL BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.38 synthetic 2KPC STRUCTURE DETERMINATION OF THE TOP-LOOP OF THE CONSERVED 3 TERMINAL SECONDARY STRUCTURE IN THE GENOME OF YFV SOLUTION NMR 6-30-10 E.LESCRINIER,N.DYUBANKOVA,K.NAUWELAERTS,R.JONES,P.HERDEWIJN YELLOW FEVER VIRUS, 3'-TERMINAL LOOP, GENOME, RNA synthetic 3KIT STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (PRECLEAVAGE STATE; PART 4 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,K.R.ANDERSEN,C.M.DUNHAM,A.C.KELLEY, J.HENTSCHEL,K.GERDES,V.RAMAKRISHNAN,D.E.BRODERSEN RIBOSOME, RELE, NUCLEASE, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC 3.30 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 2KRL THE ENSEMBLE OF THE SOLUTION GLOBAL STRUCTURES OF THE 102-NT RIBOSOME BINDING STRUCTURE ELEMENT OF THE TURNIP CRINKLE VIRUS 3' UTR RNA SOLUTION NMR; SOLUTION SCATTERING 2-09-11 X.ZUO,J.WANG,P.YU,D.EYLER,H.XU,M.STARICH,D.TIEDE,A.SIMON,W.KASPRZAK, C.SCHWIETERS,B.SHAPIRO SAXS, 3' UTR, GLOBAL STRUCTURE OF LARGE RNAS, RNA TURNIP CRINKLE VIRUS 2GQ7 CRYSTAL STRUCTURE OF AN RNA RACEMATE X-RAY DIFFRACTION 6-27-06 W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL, V.A.ERDMANN DOUBLE HELIX, RACEMATE, RNA 1.60 synthetic,synthetic 3V2E CRYSTAL STRUCTURE OF YFIA BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 30S SUBUNIT WITH BOUND YFIA OF THE 2ND RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME ASSOCIATED INHIBITOR A, RAIA, PROTEIN Y, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME-INHIBITOR COMPLEX 2.70 THERMUS THERMOPHILUS 1OSW THE STEM OF SL1 RNA IN HIV-1: STRUCTURE AND NUCLEOCAPSID PROTEIN BINDING FOR A 1X3 INTERNAL LOOP SOLUTION NMR 5-20-03 Y.YUAN,D.J.KERWOOD,A.C.PAOLETTI,M.F.SHUBSDA,P.N.BORER RNA synthetic 2BX2 CATALYTIC DOMAIN OF E. COLI RNASE E X-RAY DIFFRACTION 10-14-05 M.J.MARCAIDA,A.J.CALLAGHAN,W.G.SCOTT,B.F.LUISI RNA-BINDING, RNA TURNOVER, RNA PROCESSING, HYDROLASE, ENDONUCLEASE, NUCLEASE 2.85 synthetic 2XNZ XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO ACETOGUANAMINE IDENTIFIED BY VIRTUAL SCREENING X-RAY DIFFRACTION 4-06-11 P.DALDROP,F.E.REYES,D.A.ROBINSON,C.M.HAMMOND,D.M.J.LILLEY,R.T.BATEY, R.BRENK RNA, APTAMER, RNA-LIGAND COMPLEX, MRNA 1.59 BACILLUS SUBTILIS 2Y16 THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 4DHB CRYSTAL STRUCTURE OF YAEJ BOUND TO THE 70S RIBOSOME X-RAY DIFFRACTION 3-28-12 M.G.GAGNON,S.V.SEETHARAMAN,D.P.BULKLEY,T.A.STEITZ RIBOSOME, YAEJ, RIBOSOME STALLING, RIBOSOME RESCUE, RESCUE FACTOR, ALTERNATIVE RESCUE FACTOR, ARFB, RELEASE FACTOR, RESCUE OF STALLED RIBOSOMES 3.20 THERMUS THERMOPHILUS,synthetic 4JZV CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS PYROPHOSPHOHYDROLASE BSRPPH BOUND TO A NON-HYDROLYSABLE TRIPHOSPHORYLATED DINUCLEOTIDE RNA (PCP- PGPG) - SECOND GUANOSINE RESIDUE IN GUANOSINE BINDING POCKET X-RAY DIFFRACTION 5-08-13 J.PITON,V.LARUE,Y.THILLIER,A.DORLEANS,O.PELLEGRINI,I.LI DE LA SIERRA- GALLAY,J.J.VASSEUR,F.DEBART,C.TISNE,C.CONDON NUDIX HYDROLASE, RNA PYROPHOSPHOHYDROLASE, RPPH, CYTOSOL, HYDROLASE- RNA COMPLEX 2.20 synthetic 3DVV CRYSTAL STRUCTURE OF HIV-1 SUBTYPE F DIS EXTENDED DUPLEX RNA BOUND TO RIBOSTAMYCIN (U267OME) X-RAY DIFFRACTION 8-12-08 E.ENNIFAR,P.DUMAS,V.OLIERIC HIV-1, RNA, ANTIBIOTIC, AMINOGLYCOSIDE 2.00 synthetic 1Y95 HIV-1 DIS(MAL) DUPLEX PB-SOAKED X-RAY DIFFRACTION 12-21-04 E.ENNIFAR,P.WALTER,P.DUMAS RNA, HIV-1, METAL IONS, BULGE 2.80 synthetic 3LWQ STRUCTURE OF H/ACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 3MU X-RAY DIFFRACTION 7-14-10 J.ZHOU,B.LIANG,C.LV,W.YANG,H.LI H/ACA PSEUDOURIDINE SYNTHASE, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE-RNA BINDING PROTEIN-RNA COMPLEX 2.68 synthetic,synthetic 1WRQ CRYSTAL STRUCTURE OF HUTP-ANTITERMINATION COMPLEX X-RAY DIFFRACTION 8-30-05 T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR HUTP, RNA BINDING PROTEIN, ANTITERMINATION, L-HISTIDINE, METAL IONS, CONFORMATIONAL CHANGE, TRANSCRIPTION/RNA COMPLEX 2.20 synthetic 1XPE HIV-1 SUBTYPE B GENOMIC RNA DIMERIZATION INITIATION SITE X-RAY DIFFRACTION 10-18-05 E.ENNIFAR,P.DUMAS RNA, LOOP-LOOP COMPLEX, HIV-1 1.94 synthetic 3OAS CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO TELITHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 12-15-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, TELITHROMYCIN, RIBOSOMAL SUBUNIT, LARGE, RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX 3.25 ESCHERICHIA COLI,ESCHERICHIA COLI 2ZM5 CRYSTAL STRUCTURE OF TRNA MODIFICATION ENZYME MIAA IN THE COMPLEX WITH TRNA(PHE) X-RAY DIFFRACTION 4-14-09 J.SAKAI,M.YAO,S.CHIMNARONK,I.TANAKA PROTEIN-RNA COMPLEX, TRNA MODIFICATION ENZYME, NUCLEOTIDE- BINDING, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX 2.55 ESCHERICHIA COLI K12 1VBX CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN EDTA SOLUTION X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 2.70 synthetic 4KCY S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-I CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT A. THE 50S SUBUNIT A CAN BE FOUND IN 4KCZ. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KD0 (30S) AND 4KD2 (50S) X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 3J20 PROMISCUOUS BEHAVIOR OF PROTEINS IN ARCHAEAL RIBOSOMES REVEALED BY CRYO-EM: IMPLICATIONS FOR EVOLUTION OF EUKARYOTIC RIBOSOMES (30S RIBOSOMAL SUBUNIT) ELECTRON MICROSCOPY 11-28-12 J.-P.ARMACHE,A.M.ANGER,V.MARQUEZ,S.FRANKENBERG,T.FROEHLICH,E.VILLA, O.BERNINGHAUSEN,M.THOMM,G.J.ARNOLD,R.BECKMANN,D.N.WILSON ARCHAEA, ARCHAEAL, RIBOSOMAL, 70S, KINK-TURN, PROTEIN SYNTHESIS, RNA, RIBOSOME 6.60 PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS 1LC4 CRYSTAL STRUCTURE OF TOBRAMYCIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE X-RAY DIFFRACTION 4-08-03 Q.VICENS,E.WESTHOF ANTIBIOTIC-RNA COMPLEX, ADENINE BULGES 2.54 synthetic 2QBZ STRUCTURE OF THE M-BOX RIBOSWITCH APTAMER DOMAIN X-RAY DIFFRACTION 9-18-07 C.E.DANN III,W.C.WINKLER RNA, RIBOSWITCH, YKOK, M-BOX, RNA SENSOR, NONCODING RNA 2.60 synthetic 3I9D INITIATION COMPLEX OF 70S RIBOSOME WITH TWO TRNAS AND MRNA. THIS ENTRY 3I9D CONTAINS 30S RIBOSOMAL SUBUNIT OF MOLECULE A. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I9E. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I9B (30S) AND 3I9C (50S) X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA, 16S RIBOSOMAL RNA, RIBOSOMAL RNA, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 1VS8 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH THE ANTIBIOTIC KASUGAMYIN AT 3.5A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-26-06 B.S.SCHUWIRTH,A.VILA-SANJURJO,J.H.D.CATE RIBOSOME, KASUGAMYCIN 3.46 ESCHERICHIA COLI,ESCHERICHIA COLI 1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 X-RAY DIFFRACTION 3-18-03 F.SCHLUENZEN,J.HARMS,F.FRANCESCHI,H.A.S.HANSEN,H.BARTELS, R.ZARIVACH,A.YONATH ABT-773, MACROLIDE, KETOLIDE, RIBOSOME, 50S, RIBOSOMAL SUBUNIT 3.50 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 4JUX CRYSTAL STRUCTURE OF THE RIBOSOME BOUND TO ELONGATION FACTOR G IN THE GUANOSINE TRIPHOSPHATASE STATE (THIS FILE CONTAINS THE 50S SUBUNIT) X-RAY DIFFRACTION 6-26-13 D.S.TOURIGNY,I.S.FERNANDEZ,A.C.KELLEY,V.RAMAKRISHNAN BACTERIAL PROTEINS, CATALYSIS, MODELS, MOLECULAR, PEPTIDE ELONGATION FACTOR G, PROTEIN BIOSYNTHESIS, PROTEIN CONFORMATION, PROTEIN STRUCTURE, TERTIARY, RNA, BACTERIAL, MESSENGER, TRANSFER, RIBOSOMES, THERMUS THERMOPHILUS, RIBOSOME, HYBRID STATE, GUANOSINE TRIPHOSPHATE, GUANOSINE TRIPHOSPHATASE 2.86 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2KM8 INTERDOMAIN RRM PACKING CONTRIBUTES TO RNA RECOGNITION IN THE RNA15, HRP1, ANCHOR RNA 3' PROCESSING TERNARY COMPLEX SOLUTION NMR 7-28-10 T.C.LEEPER,G.VARANI ' PROCESSING, RRM DOMAIN, RNA15P, HRP1P, ENHANCER ELEMENT, POSITIONING ELEMENT, RNA RECOGNITION, MRNA PROCESSING, NUCLEUS, RNA- BINDING, NONSENSE-MEDIATED MRNA DECAY, PHOSPHOPROTEIN, RNA BINDING PROTEIN-RNA COMPLEX synthetic 1JZV CRYSTAL STRUCTURE OF A BULGED RNA FROM THE SL2 STEM-LOOP OF THE HIV-1 PSI-RNA X-RAY DIFFRACTION 11-11-03 Y.XIONG,C.SUDARSANAKUMAR,J.DENG,B.PAN,M.SUNDARALINGAM A-BULGE, A-RNA, HIV-1 SL2, X-RAY 1.70 synthetic,synthetic 1S34 SOLUTION STRUCTURE OF RESIDUES 907-929 FROM ROUS SARCOMA VIRUS SOLUTION NMR 8-31-04 J.CABELLO-VILLEGAS,K.E.GILES,A.M.SOTO,P.YU,K.L.BEEMON, Y.X.WANG STEM-LOOP, TETRALOOP, BULGE, RNA synthetic 3NMR CRYSTAL STRUCTURE OF CUGBP1 RRM1/2-RNA COMPLEX X-RAY DIFFRACTION 10-27-10 M.TEPLOVA,J.SONG,H.GAW,A TEPLOV,D.J.PATEL RRM, PRE-MRNA SPLICING, RNA BINDING PROTEIN-RNA COMPLEX 1.85 HOMO SAPIENS 3CCM STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2611U X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL G2611U MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, RIBOSOME 2.55 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2Y18 THE CRYSTAL STRUCTURE OF EF-TU AND TRP-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, EF-TU, TRNA, GDP, KIRROMYCIN, HIRSH TRNA, TRNA TRP 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2XS5 CRYSTAL STRUCTURE OF THE RRM DOMAIN OF MOUSE DELETED IN AZOOSPERMIA-LIKE IN COMPLEX WITH MVH RNA, UGUUC X-RAY DIFFRACTION 10-05-11 H.T.JENKINS,T.A.EDWARDS RNA BINDING PROTEIN-RNA COMPLEX, TRANSLATION REGULATION 1.60 MUS MUSCULUS 3J3W ATOMIC MODEL OF THE IMMATURE 50S SUBUNIT FROM BACILLUS SUBTILIS (STATE II-A) ELECTRON MICROSCOPY 6-12-13 N.LI,Q.GUO,Y.ZHANG,Y.YUAN,C.MA,J.LEI,N.GAO RIBOSOME BIOGENESIS, RIBOSOME ASSEMBLY, RNA FOLDING, YLQF, RIBOSOME 10.70 BACILLUS SUBTILIS 1NC0 U80G U6 INTRAMOLECULAR STEM-LOOP RNA FROM SACCHAROMYCES CEREVISIAE SOLUTION NMR 2-25-03 D.G.SASHITAL,A.M.ALLMANN,S.VAN DOREN,S.E.BUTCHER U6 RNA, U80G, RESIDUAL DIPOLAR COUPLING, RDC synthetic 4DV1 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, U20G, BOUND WITH STREPTOMYCIN X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.85 THERMUS THERMOPHILUS 1K8S BULGED ADENOSINE IN AN RNA DUPLEX SOLUTION NMR 11-14-01 V.THIVIYANATHAN,A.B.GULIAEV,N.B.LEONTIS,D.G.GORENSTEIN BULGED BASE, BULGED ADENOSINE, BULGED RNA, RNA BULGES synthetic,synthetic 3K61 CRYSTAL STRUCTURE OF FBF-2/FOG-1 FBEA COMPLEX X-RAY DIFFRACTION 11-03-09 Y.WANG,L.OPPERMAN,M.WICKENS,T.M.T.HALL FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE FLIPPING, BASE STACKING 2.21 synthetic 2GCV POST-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA; RIBOZYME; PSEUDOKNOT; HELIX 2.10 synthetic,synthetic 2JXV SOLUTION STRUCTURE OF A LET-7 MIRNA:LIN-41 MRNA COMPLEX FROM C. ELEGANS SOLUTION NMR 4-29-08 M.CEVEC,C.THIBAUDEAU,J.PLAVEC ASYMMETRIC INTERNAL LOOP, STEM-LOOP, GAAA TETRALOOP, GU MISMATCH, RESIDUAL DIPOLAR COUPLINGS synthetic 1AFX UGAA EUKARYOTIC RIBOSOMAL RNA TETRALOOP, NMR, 13 STRUCTURES SOLUTION NMR 5-15-97 S.E.BUTCHER,T.DIECKMANN,J.FEIGON RIBONUCLEIC ACID, TETRALOOP, RIBOSOMAL RNA synthetic 3OVA HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE IN POSITION 76 OF TRNA X-RAY DIFFRACTION 12-01-10 B.C.PAN,Y.XIONG,T.A.STEITZ PROTEIN-RNA, ROSSMANN FOLD, CCA-ADDING, TRNA, NUCLEOTIDYLTRANSFER, TRANSFERASE-RNA COMPLEX 1.98 synthetic 3D2S CRYSTAL STRUCTURE OF MBNL1 TANDEM ZINC FINGER 3 AND 4 DOMAIN IN COMPLEX WITH CGCUGU RNA X-RAY DIFFRACTION 12-02-08 M.TEPLOVA,D.J.PATEL TANDEM ZINC FINGER DOMAIN, RNA, ALTERNATIVE SPLICING, METAL- BINDING, NUCLEUS, RNA-BINDING, ZINC, ZINC-FINGER, METAL BINDING PROTEIN/RNA COMPLEX 1.70 HOMO SAPIENS 2ESI COMPLEX BETWEEN KANAMYCIN A AND THE 16S-RRNA A SITE. X-RAY DIFFRACTION 12-20-05 E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 3.00 synthetic 3U5H THE STRUCTURE OF THE EUKARYOTIC RIBOSOME AT 3.0 A RESOLUTION X-RAY DIFFRACTION 12-21-11 A.BEN-SHEM,N.GARREAU DE LOUBRESSE,S.MELNIKOV,L.JENNER,G.YUSUPOVA, M.YUSUPOV TRANSLATION, RIBOSOME, 40S, 60S, 80S, RIBOSOMAL, RIBOSOMAL RNA, RRNA, RIBOSOMAL PROTEIN, STM1, EUKARYOTIC RIBOSOME, RNA-PROTEIN COMPLEX 3.00 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 2JLW DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA2 X-RAY DIFFRACTION 11-25-08 D.H.LUO,T.XU,R.P.WATSON,D.S.BECKER,A.SAMPATH,W.JAHNKE, S.S.YEONG,C.H.WANG,S.P.LIM,S.G.VASUDEVAN,J.LESCAR HYDROLASE/RNA, RNA-BINDING, FLAVIVIRUSES, GLYCOPROTEIN, DENGUE VIRUS, TRANSCRIPTION REGULATION, RNA-DIRECTED RNA POLYMERASE, NUCLEOTIDE-BINDING, VIRAL NUCLEOPROTEIN, CLEAVAGE ON PAIR OF BASIC RESIDUES, PROTEASE, HYDROLASE, TRANSFERASE, ATP-BINDING, ENDOPLASMIC RETICULUM, NUCLEOTIDYLTRANSFERASE, PHOSPHOPROTEIN, CAPSID PROTEIN, RNA REPLICATION, SERINE PROTEASE, ENVELOPE PROTEIN, RIBONUCLEOPROTEIN, NS3 HELICASE STRUCTURE, MULTIFUNCTIONAL ENZYME, SSRNA, VIRION, NUCLEUS, MEMBRANE, SECRETED, HELICASE, METAL-BINDING, TRANSMEMBRANE, TRANSCRIPTION 2.60 synthetic 3MR8 RECOGNITION OF THE AMBER STOP CODON BY RELEASE FACTOR RF1. THIS ENTRY 3MR8 CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3MS1. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3MRZ (50S) AND 3MS0 (30S). X-RAY DIFFRACTION 7-14-10 A.KOROSTELEV,J.ZHU,H.ASAHARA,H.F.NOLLER S, RIBOSOME, TERMINATION, RELEASE FACTOR, RF1, AMBER, STOP CODON, UAG 3.62 THERMUS THERMOPHILUS,ESCHERICHIA COLI 4E48 STRUCTURE OF 20MER DOUBLE-HELICAL RNA COMPOSED OF CUG/CUG-REPEATS X-RAY DIFFRACTION 7-11-12 E.KATORCHA,L.MALININA SIRNA, TRINUCLEOTIDE REPEAT EXPANSION, RNA 2.50 synthetic 1Y27 G-RIBOSWITCH-GUANINE COMPLEX X-RAY DIFFRACTION 12-28-04 A.SERGANOV,Y.R.YUAN,D.J.PATEL G-RIBOSWITCH GUANINE RECOGNITION, CRYSTAL STRUCTURE, RNA 2.40 BACILLUS SUBTILIS 4ENN CRYSTAL STRUCTURE OF S. POMBE ATL1 IN COMPLEX WITH DAMAGED DNA CONTAINING O6-CARBOXYMETHYLGUANINE X-RAY DIFFRACTION 6-20-12 J.L.TUBBS,A.S.ARVAI,J.A.TAINER ALKYLTRANSFERASE, DNA REPAIR, NUCLEOTIDE EXCISION REPAIR, NER, BASE REPAIR, DNA, DNA DAMAGE, GUANINE, ALKYLATION, DNA BINDING PROTEIN- DNA COMPLEX 2.84 SYNTHETIC CONSTRUCT 402D '-R(*CP*GP*CP*CP*AP*GP*CP*G)-3' X-RAY DIFFRACTION 6-16-98 S.B.JANG,L.-W.HUNG,Y.-I.CHI,E.L.HOLBROOK,R.CARTER, S.R.HOLBROOK RNA DOUBLE HELIX, RNA WITH TANDEM C-A+ BASE PAIR 2.30 synthetic 4HKQ PROTEIN DNA COMPLEX X-RAY DIFFRACTION 2-20-13 E.NOWAK,W.POTRZEBOWSKI,P.V.KONAREV,J.W.RAUSCH,M.K.BONA,D.I.SVERGUN, J.M.BUJNICKI,S.F.J.LE GRICE,M.NOWOTNY PROTEIN-DNA-RNA COMPLEX, REVERSE TRANSCRIPTION, TRANSCRIPTION-RNA-DNA COMPLEX 3.04 synthetic 3OK2 CRYSTAL STRUCTURE OF THE ANA:RNA DECAMER WITHOUT LATTICE TRANSLOCATION DEFECTS X-RAY DIFFRACTION 11-30-11 M.OVAERE,L.VAN MEERVELT RNA, HYBRID, ANA, SUGAR MODIFICATION, ALTRITOL SUGAR RINGS 1.96 synthetic 3V24 CRYSTAL STRUCTURE OF RMF BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 30S SUBUNIT WITH BOUND RMF OF THE 2ND RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME MODULATION FACTOR, STRESS RESPONSE, SMALL SUBUNIT HEAD MOVEMENT, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.00 THERMUS THERMOPHILUS 3U5B THE STRUCTURE OF THE EUKARYOTIC RIBOSOME AT 3.0 A RESOLUTION X-RAY DIFFRACTION 12-21-11 A.BEN-SHEM,N.GARREAU DE LOUBRESSE,S.MELNIKOV,L.JENNER,G.YUSUPOVA, M.YUSUPOV TRANSLATION, RIBOSOME, 40S, 60S, 80S, RIBOSOMAL, RIBOSOMAL RNA, RRNA, RIBOSOMAL PROTEIN, STM1, EUKARYOTIC RIBOSOME, RNA-PROTEIN COMPLEX 3.00 SACCHAROMYCES CEREVISIAE 2QUS HAMMERHEAD RIBOZYME G12A MUTANT PRE-CLEAVAGE X-RAY DIFFRACTION 7-15-08 Y.I.CHI,W.G.SCOTT,S.H.KIM HAMMERHEAD RNA, HAMMERHEAD RIBOZYME, CATALYTIC RNA, SATELLITE VIRUS RNA, RIBOZYME 2.40 synthetic 1VQ7 THE STRUCTURE OF THE TRANSITION STATE ANALOGUE "DCA" BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.50 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 1SDR CRYSTAL STRUCTURE OF AN RNA DODECAMER CONTAINING THE ESCHERICHIA COLI SHINE-DALGARNO SEQUENCE X-RAY DIFFRACTION 2-27-95 H.SCHINDELIN,M.ZHANG,R.BALD,J.-P.FUERSTE,V.A.ERDMANN, U.HEINEMANN A-RNA, DOUBLE HELIX 2.60 synthetic,synthetic 3ZJU TERNARY COMPLEX OF E .COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND THE BENZOXABOROLE AN3016 IN THE EDITING CONFORMATION X-RAY DIFFRACTION 4-17-13 S.CUSACK,A.PALENCIA,T.CREPIN,V.HERNANDEZ,T.AKAMA,S.J.BAKER,W.BU, L.FENG,Y.R.FREUND,L.LIU,M.MEEWAN,M.MOHAN,W.MAO,F.L.ROCK,H.SEXTON, A.SHEORAN,Y.ZHANG,Y.ZHANG,Y.ZHOU,J.A.NIEMAN,M.R.ANUGULA, E.M.KERAMANE,K.SAVARIRAJ,D.S.REDDY,R.SHARMA,R.SUBEDI,R.SINGH, A.OLEARY,N.L.SIMON,P.L.DEMARSH,S.MUSHTAQ,M.WARNER,D.M.LIVERMORE, M.R.K.ALLEY,J.J.PLATTNER LIGASE-RNA COMPLEX, NUCLEOTIDE (ATP) -BINDING, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE, AMINOACYL TRNA SYNTHETASE, ATP BINDING, EDITING SYNTHETASE 2.40 ESCHERICHIA COLI K-12 4B8I CRYSTAL STRUCTURE OF 70S RIBOSOME WITH BOTH COGNATE TRNAS IN THE E AND P SITES REPRESENTING AN AUTHENTIC ELONGATION COMPLEX. X-RAY DIFFRACTION 4-03-13 Y.G.GAO,S.FENG,Y.CHEN RIBOSOME, TRANSLATION 3.70 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3V6W CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G347U. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATIONS, RAM, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, PAROMOMYCIN AS CRYSTALLIZATION AGENT, RIBOSOME 3.90 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1BZU STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE SOLUTION NMR 4-27-99 P.C.DURANT,D.R.DAVIS TRNA, PSEUDOURIDINE, ANTICODON synthetic 2DQQ CRYSTAL STRUCTURE OF D(CXCTXCTTC):R(GAAGAAGAG) WHERE X IS 5- (N-AMINOHEXYL)CARBAMOYL-2'-O-METHYLURIDINE X-RAY DIFFRACTION 4-17-07 E.C.M.JUAN,J.KONDO,T.ITO,Y.UENO,A.MATSUDA,A.TAKENAKA MODIFIED NUCLEOTIDE, 5-(N-AMINOHEXYL)CARBAMOYL-2'-O- METHYLURIDINE, A-FORM RNA:DNA HYBRID DUPLEX, DNA-RNA HYBRID 2.00 synthetic 3G9Y CRYSTAL STRUCTURE OF THE SECOND ZINC FINGER FROM ZRANB2/ZNF265 BOUND TO 6 NT SSRNA SEQUENCE AGGUAA X-RAY DIFFRACTION 3-03-09 F.E.LOUGHLIN,A.P.MCGRATH,M.LEE,J.M.GUSS,J.P.MACKAY ZINC FINGER, ZRANB2, ZNF265, RNA, PROTEIN-RNA COMPLEX, , TRANSCRIPTION/RNA COMPLEX 1.40 synthetic 2I91 KDA RO AUTOANTIGEN IN COMPLEX WITH A FRAGMENT OF MISFOLDED RNA X-RAY DIFFRACTION 10-17-06 K.M.REINISCH,A.J.STEIN VON WILLEBRAND FACTOR A, ROSSMANN-FOLD, HEAT REPEAT, MIDAS MOTIF, RNA BINDING PROTEIN/RNA COMPLEX 2.65 synthetic,synthetic 4KBV S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-II CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS 30S RIBOSOMAL SUBUNIT B. THE FULL ASYMMETRIC UNIT ALSO CONTAINS PDB ENTRIES 4KBW (50S SUBUNIT B), 4KBT (30S SUBUNIT A), AND 4KBU (50S SUBUNIT A). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.86 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 2ZH2 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDAC X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.66 ARCHAEOGLOBUS FULGIDUS 1K01 STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA X-RAY DIFFRACTION 10-26-01 F.SCHLUENZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ, R.ALBRECHT,A.YONATH,F.FRANCESCHI RIBOSOME, 50S, 23S, 5S, ANTIBIOTICS, CHLORAMPHENICOL, PEPTIDYL TRANSFERASE CENTER 3.50 DEINOCOCCUS RADIODURANS 1NJO THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A SHORT SUBSTRATE ANALOG ACCPUROMYCIN (ACCP) X-RAY DIFFRACTION 2-11-03 A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS, R.BERISIO,H.BARTELS,H.A.HANSEN,A.YONATH RIBOSOMES, TRNA, PUROMYCIN, SPARSOMYCIN, PEPTIDYL- TRANSFERASE, PEPTIDE BOND FORMATION 3.70 DEINOCOCCUS RADIODURANS,synthetic 4G5M CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TETRACYCLINE. THIS ENTRY CONTAINS THE 30S SUBUNIT OF MOLECULE B. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,SYNTHETIC DNA 1L8V CRYSTAL STRUCTURE OF A MUTANT (C109G,G212C) P4-P6 DOMAIN OF THE GROUP I INTRON FROM TETRAHYMENA THERMOPHILIA X-RAY DIFFRACTION 8-23-02 D.J.BATTLE,J.A.DOUDNA RNA, RIBOZYME DOMAIN, A-MINOR 2.80 synthetic 3OHY STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH AZITHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, AZITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS 1PBR STRUCTURE OF 16S RIBOSOMAL RNA, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 9-17-97 D.FOURMY,M.I.RECHT,S.BLANCHARD,J.D.PUGLISI AMINOGLYCOSIDE, RIBOSOMAL RNA, RNA TRANSCRIPT, ANTIBIOTIC, RIBONUCLEIC ACID synthetic 1FOQ PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA ELECTRON MICROSCOPY 12-22-00 A.A.SIMPSON,Y.TAO,P.G.LEIMAN,M.O.BADASSO,Y.HE,P.J.JARDINE, N.H.OLSON,M.C.MORAIS,S.GRIMES,D.L.ANDERSON,T.S.BAKER, M.G.ROSSMANN DSRNA OLIGOMERIC MODEL, PROHEAD RNA, BACTERIOPHAGE PHI29 20.00 BACILLUS PHAGE PHI29 3MS0 RECOGNITION OF THE AMBER STOP CODON BY RELEASE FACTOR RF1. THIS ENTRY 3MS0 CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3MRZ. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3MR8 (30S) AND 3MS1 (50S). X-RAY DIFFRACTION 7-14-10 A.KOROSTELEV,J.ZHU,H.ASAHARA,H.F.NOLLER S, RIBOSOME, TERMINATION, RELEASE FACTOR, RF1, STOP CODON, UGA, AMBER, TRNA 3.62 THERMUS THERMOPHILUS,ESCHERICHIA COLI 3V26 CRYSTAL STRUCTURE OF HPF BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 30S SUBUNIT WITH BOUND HPF OF THE 1ST RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME HIBERNATION FACTOR, YHBH, PROTEIN E, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.10 THERMUS THERMOPHILUS 2JEA STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO RNA X-RAY DIFFRACTION 4-03-07 E.LORENTZEN,E.CONTI HYDROLASE RNA COMPLEX, HYDROLASE-RNA COMPLEX, NUCLEASE, HYDROLASE, RNA-BINDING, EXONUCLEASE, PHOSPHOROLYTIC, EXORIBONUCLEASE, RNA DEGRADATION, RRP4, RRP42, RRP41, EXOSOME, RNASE PH 2.33 synthetic 1I4B THE SOLUTION STRUCTURE OF THE MAJOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA SOLUTION NMR 4-21-01 I.TINOCO JR.,C.-H.KIM RNA, TRILOOP, STEM-LOOP, MUTANT, REPLICATION, BMV, NMR synthetic 2HO6 POST-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA; RIBOZYME; PSEUDOKNOT; HELIX 2.80 synthetic,synthetic 4BPN THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A - COMPLEX 2 X-RAY DIFFRACTION 7-17-13 M.WEISSER,F.VOIGTS-HOFFMANN,J.RABL,M.LEIBUNDGUT,N.BAN RIBOSOME, TRANSLATION, TRANSLATION INITIATION, SMALL RIBOSOMAL SUBUNIT, 40S, EIF1A, EIF1, EUKARYOTIC TRANSLATION INITIATION 3.703 TETRAHYMENA THERMOPHILA 3J0X STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (30S RIBOSOME OF CLASS 4B OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 13.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1ULL RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES SOLUTION NMR 8-20-97 X.YE,A.GORIN,A.D.ELLINGTON,D.J.PATEL REV PEPTIDE-RNA RECOGNITION, ALPHA-HELIX IN WIDENED RNA MAJOR GROOVE, PURINE-PURINE MISMATCHES, UAU BASE TRIPLE, ADAPTIVE BINDING OF PEPTIDE AND RNA IN COMPLEX, COMPLEX (RNA APTAMER/REV PEPTIDE), VIRAL PROTEIN/RNA COMPLEX synthetic 3H3V YEAST RNAP II CONTAINING POLY(A)-SIGNAL SEQUENCE IN THE ACTIVE SITE X-RAY DIFFRACTION 6-16-09 S.DENGL,P.CRAMER TRANSFERASE/DNA/RNA, DNA-BINDING, PHOSPHORYLATION, RNA POLYMERASE II, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSFERASE, TRANSCRIPTION, POLYADENYLATION, TERMINATION, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING 4.00 synthetic 2AZ2 FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P4122) X-RAY DIFFRACTION 10-11-05 J.A.CHAO,J.H.LEE,B.R.CHAPADOS,E.W.DEBLER,A.SCHNEEMANN, J.R.WILLIAMSON PROTEIN-RNA COMPLEX, FOUR-HELIX BUNDLE, VIRAL PROTEIN/RNA COMPLEX 2.60 synthetic 1R3X INTRAMOLECULAR DNA TRIPLEX WITH RNA THIRD STRAND, NMR, 10 STRUCTURES SOLUTION NMR 5-20-98 C.H.GOTFREDSEN,P.SCHULTZE,J.FEIGON OLIGONUCLEOTIDE, TRIPLEX, RNA THIRD STRAND, DNA/RNA COMPLEX, DNA-RNA HYBRID synthetic 4KYY CRYSTAL STRUCTURE OF RNA 17-MER UUCGGUUUUGAUCCGGA DUPLEX X-RAY DIFFRACTION 6-12-13 P.C.SMITH,S.SHUMAN RNA DUPLEX, RNA 2.35 synthetic 1JO7 SOLUTION STRUCTURE OF INFLUENZA A VIRUS PROMOTER SOLUTION NMR 9-19-01 S.-H.BAE,H.-K.CHEONG,J.-H.LEE,C.CHEONG,M.KAINOSHO,B.-S.CHOI RNA PANHANDLE, AAU AC MISMATCH, BENDING, INTERNAL LOOP, UUCG synthetic 3TMI STRUCTURAL BASIS FOR RNA RECOGNITION AND ACTIVATION OF RIG-I X-RAY DIFFRACTION 9-21-11 F.JIANG,M.T.MILLER,J.MARCOTRIGIANO RNA DEXH/D BOX HELICASE/ATPASE, INNATE IMMUNE RECEPTOR, ATP BINDING AND RNA BINDING, HYDROLASE-RNA COMPLEX 2.90 synthetic 4DR5 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS (HB8) 30S RIBOSOMAL SUBUNIT WITH CODON, CRYSTALLOGRAPHICALLY DISORDERED COGNATE TRANSFER RNA ANTICODON STEM-LOOP AND STREPTOMYCIN BOUND X-RAY DIFFRACTION 11-14-12 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.45 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3DS7 STRUCTURE OF AN RNA-2'-DEOXYGUANOSINE COMPLEX X-RAY DIFFRACTION 2-17-09 A.L.EDWARDS,R.T.BATEY RNA, RNA-LIGAND COMPLEX, RIBOSWITCH 1.85 synthetic 1XMO CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITH AAG-MRNA IN THE DECODING CENTER X-RAY DIFFRACTION 12-14-04 F.V.MURPHY,V.RAMAKRISHNAN,A.MALKIEWICZ,P.F.AGRIS RIBOSOME, DECODING, TRNA MODIFICATION 3.25 THERMUS THERMOPHILUS HB27,synthetic,synthetic 4M59 CRYSTAL STRUCTURE OF THE PENTATRICOPEPTIDE REPEAT PROTEIN PPR10 IN COMPLEX WITH AN 18-NT PSAJ RNA ELEMENT X-RAY DIFFRACTION 10-30-13 P.YIN,Q.LI,C.YAN,Y.LIU,N.YAN PENTATRICOPEPTIDE REPEATS, SUPERHELICAL, RNA BINDING PROTEIN, RNA, RNA BINDING PROTEIN-RNA COMPLEX 2.46 synthetic 4KJ3 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 1I97 CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE X-RAY DIFFRACTION 4-12-01 M.PIOLETTI,F.SCHLUENZEN,J.HARMS,R.ZARIVACH,M.GLUEHMANN, H.AVILA,H.BARTELS,C.JACOBI,T.HARTSCH,A.YONATH,F.FRANCESCHI S RIBOSOME, ANTIBIOTICS, TETRACYCLINE 4.50 THERMUS THERMOPHILUS 3S15 RNA POLYMERASE II INITIATION COMPLEX WITH A 7-NT RNA X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.30 synthetic 4L6L CRYSTAL STRUCTURE OF BLASTICIDIN S BOUND TO THERMUS THERMOPHILUS 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT AND BLASTICIDIN S MOLECULE FROM THE SECOND 70S RIBOSOME X-RAY DIFFRACTION 7-31-13 E.SVIDRITSKIY,A.A.KOROSTELEV TRANSLATION TERMINATION, PEPTIDYL TRANSFER, RIBOSOMAL CRYSTAL STRUCTURE, TRANSLATION INHIBITOR, BLASTICIDIN S, RIBOSOME 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3VNV COMPLEX STRUCTURE OF VIRAL RNA POLYMERASE II X-RAY DIFFRACTION 8-08-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 2.60 synthetic,synthetic 1AJL FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON SOLUTION NMR 7-07-97 K.J.LUEBKE,S.M.LANDRY,I.TINOCO JUNIOR RNA BULGE LOOP, GROUP I INTRON, RIBONUCLEIC ACID TETRAHYMENA THERMOPHILA,TETRAHYMENA THERMOPHILA 1QZB COORDINATES OF THE A-SITE TRNA MODEL FITTED INTO THE CRYO- EM MAP OF 70S RIBOSOME IN THE PRE-TRANSLOCATIONAL STATE ELECTRON MICROSCOPY 11-04-03 M.VALLE,A.ZAVIALOV,W.LI,S.M.STAGG,J.SENGUPTA,R.C.NIELSEN, P.NISSEN,S.C.HARVEY,M.EHRENBERG,J.FRANK A-SITE TRNA 9.00 synthetic 2CSX CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET) X-RAY DIFFRACTION 9-20-05 K.NAKANISHI,Y.OGISO,T.NAKAMA,S.FUKAI,O.NUREKI,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) LIGASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 2.70 synthetic 3A3A CRYSTAL STRUCTURE OF HUMAN SELENOCYSTINE TRNA X-RAY DIFFRACTION 8-11-09 Y.ITOH,S.CHIBA,S.I.SEKINE,S.YOKOYAMA TRNA, RNA 3.10 synthetic 4N2S CRYSTAL STRUCTURE OF THA8 IN COMPLEX WITH ZM1A-6 RNA X-RAY DIFFRACTION 10-30-13 J.KE,R.Z.CHEN,T.BAN,X.E.ZHOU,X.GU,J.S.BRUNZELLE,J.K.ZHU,K.MELCHER, H.E.XU PENTATRICOPEPTIDE REPEAT (PPR) PROTEIN, SMALL INTRON RNA BINDING, GROUP II INTRON RNA SPLICING, CHLOROPLAST, SPLICING-RNA COMPLEX 3.00 synthetic 2Y95 SOLUTION STRUCTURE OF AUCG TETRALOOP HAIRPIN FOUND IN HUMAN XIST RNA A-REPEATS ESSENTIAL FOR X-INACTIVATION SOLUTION NMR 10-26-11 M.M.DUSZCZYK,M.SATTLER RNA, X CHROMOSOME INACTIVATION, RNA STEMLOOP HOMO SAPIENS 1MJ1 FITTING THE TERNARY COMPLEX OF EF-TU/TRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME ELECTRON MICROSCOPY 11-01-02 H.STARK,M.V.RODNINA,H.-J.WIEDEN,F.ZEMLIN,W.WINTERMEYER, M.VANHEEL S RIBOSOME, LOW RESOLUTION MODEL TERNARY COMPLEX, EF-TU 13.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1TLR SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES SOLUTION NMR 11-12-97 S.E.BUTCHER,T.DIECKMANN,J.FEIGON RIBONUCLEIC ACID, TETRALOOP RECEPTOR, GROUP I INTRON, GROUP II INTRON, RNA synthetic 1IK1 SOLUTION STRUCTURE OF AN RNA HAIRPIN FROM HRV-14 SOLUTION NMR 7-18-01 H.HUANG,A.ALEXANDROV,X.CHEN,T.W.BARNES III,H.ZHANG,K.DUTTA, S.M.PASCAL A FORM HELIX, TRILOOP, RNA synthetic 3Q1R CRYSTAL STRUCTURE OF A BACTERIAL RNASE P HOLOENZYME IN COMPLEX WITH TRNA AND IN THE PRESENCE OF 5' LEADER X-RAY DIFFRACTION 3-09-11 N.J.REITER,A.OSTERMANM,A.TORRES-LARIOS,K.K.SWINGER,T.PAN,A.MONDRAGON RNASE P, RIBOZYME, RIBONUCLEASE P, TRNA, PRE-TRNA, TETRALOOP- RECEPTOR, RIBOSE ZIPPER, A-MINOR INTERACTION, BASE STACKING, INTERMOLECULAR BASE PAIRS, INTERMOLECULAR RNA-RNA CONTACTS, RNP, RIBONUCLEOPROTEIN COMPLEX, ENZYME-PRODUCT COMPLEX, METALLOENZYME, RNA-METAL INTERACTIONS, SHAPE COMPLEMENTARITY, SUBSTRATE RECOGNITION, ENDONUCLEASE, HYDROLASE-RNA COMPLEX 4.21 synthetic,synthetic,synthetic 2LPT MOLECULAR DYNAMICS RE-REFINEMENT OF DOMAIN 5 OF THE PYLAIELLA LITTORALIS GROUP II INTRON SOLUTION NMR 8-08-12 N.M.HENRIKSEN,D.R.DAVIS,T.E.CHEATHAM III RNA, TETRALOOP, BULGE synthetic 1EC6 CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN BOUND TO 20-MER RNA HAIRPIN X-RAY DIFFRACTION 2-21-00 H.A.LEWIS,K.MUSUNURU,K.B.JENSEN,C.EDO,H.CHEN KH DOMAIN, ALPHA-BETA FOLD, RNA-BINDING MOTIF, PROTEIN/RNA STRUCTURE, RNA BINDING PROTEIN/RNA COMPLEX 2.40 synthetic 1LS2 FITTING OF EF-TU AND TRNA IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME ELECTRON MICROSCOPY 6-26-02 M.VALLE,J.SENGUPTA,N.K.SWAMI,R.A.GRASSUCCI,N.BURKHARDT, K.H.NIERHAUS,R.K.AGRAWAL,J.FRANK EF-TU, TERNARY COMPLEX, CRYO-EM, 70S E.COLI RIBOSOME, TRANSLATION/RNA COMPLEX 16.80 SACCHAROMYCES CEREVISIAE 2DD2 AN ALTERNATING SHEARED AA PAIR IN 5'GGUGAAGGCU/3'PCCGAAGCCG: I. THE MAJOR CONFORMATION WITH A6/A15/A16 STACK SOLUTION NMR 6-13-06 G.CHEN,S.D.KENNEDY,T.R.KRUGH,D.H.TURNER ALTERNATING, CONFORMATION EXCHANGE, DYNAMICS, SHEARED AA PAIR, SHEARED GA PAIR, THERMODYNAMICS, RNA SECONDARY STRUCTURE, A-MINOR MOTIF, KINK-TURN synthetic,synthetic 4BY9 THE STRUCTURE OF THE BOX CD ENZYME REVEALS REGULATION OF RRNA METHYLATION SOLUTION NMR 10-09-13 A.LAPINAITE,B.SIMON,L.SKJAERVEN,M.RAKWALSKA-BANGE,F.GABEL, T.CARLOMAGNO TRANSFERASE-RNA COMPLEX, RRNA MODIFICATION PYROCOCCUS FURIOSUS,PYROCOCCUS FURIOSUS 2GXB CRYSTAL STRUCTURE OF THE ZA DOMAIN BOUND TO Z-RNA X-RAY DIFFRACTION 5-01-07 A.ATHANASIADIS,D.PLACIDO,A.RICH Z-RNA, ZA, ADAR1, RNA EDITING, PROTEIN-RNA COMPLEX, HYDROLASE/RNA COMPLEX 2.25 synthetic 2XZM CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1. THIS FILE CONTAINS THE 40S SUBUNIT AND INITIATION FACTOR FOR MOLECULE 1 X-RAY DIFFRACTION 1-19-11 J.RABL,M.LEIBUNDGUT,S.F.ATAIDE,A.HAAG,N.BAN RIBOSOME, TRANSLATION 3.93 TETRAHYMENA THERMOPHILA 2R7V CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (GGCUUU) COMPLEX X-RAY DIFFRACTION 7-29-08 X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 2.80 SIMIAN ROTAVIRUS 1O3Z HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED X-RAY DIFFRACTION 5-27-03 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, RNA, METAL IONS, DIS 2.65 synthetic 3E2E CRYSTAL STRUCTURE OF AN INTERMEDIATE COMPLEX OF T7 RNAP AND 7NT OF RNA X-RAY DIFFRACTION 11-04-08 K.J.DURNIAK,S.BAILEY,T.A.STEITZ T7 RNA POLYMERASE, DNA-DIRECTED RNA POLYMERASE, TRANSCRIPTION, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE/RNA/DNA COMPLEX 3.00 synthetic 2HOM CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO THIAMINE MONOPHOSPHATE X-RAY DIFFRACTION 9-19-06 T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; RIBOSWITCH 2.89 synthetic 4JV5 CRYSTAL STRUCTURES OF PSEUDOURIDINILATED STOP CODONS WITH ASLS X-RAY DIFFRACTION 6-26-13 I.S.FERNANDEZ,C.L.NG,A.C.KELLEY,W.GUOWEI,Y.T.YU,V.RAMAKRISHNAN S RIBOSOMAL PARTICLE, PROTEIN SYNTHESIS, RIBOSOME 3.16 THERMUS THERMOPHILUS,SYNTHETIC CONSTRUCT,SYNTHETIC CONSTRUCT 4JI3 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG, MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING 3.35 THERMUS THERMOPHILUS 3Q0P CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH HUNCHBACK NRE X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.60 synthetic 2WJ8 RESPIRATORY SYNCITIAL VIRUS RIBONUCLEOPROTEIN X-RAY DIFFRACTION 12-08-09 R.G.TAWAR,S.DUQUERROY,C.VONRHEIN,P.F.VARELA,L.DAMIER-PIOLLE, N.CASTAGNE,K.MACLELLAN,H.BEDOUELLE,G.BRICOGNE,D.BHELLA, J.ELEOUET,F.A.REY RNA BINDING PROTEIN RNA COMPLEX, NUCLEOCAPSID (N), RIBONUCLEOPROTEIN, RESPIRATORY SYNCYTIAL VIRUS (RSV), VIRAL NUCLEOPROTEIN, TEMPLATE-LIKE ASSEMBLY, RNA, VIRION, COMPLEX, CYTOPLASM, RNA BINDING PROTEIN 3.29 ESCHERICHIA COLI 1ME1 CHIMERIC HAIRPIN WITH 2',5'-LINKED RNA LOOP AND RNA STEM SOLUTION NMR 8-19-03 A.Y.DENISOV,R.N.HANNOUSH,K.GEHRING,M.J.DAMHA HAIRPIN, (2',5')-RNA, RNA synthetic 1PNU CRYSTAL STRUCTURE OF A STREPTOMYCIN DEPENDENT RIBOSOME FROM ESCHERICHIA COLI, 50S SUBUNIT OF 70S RIBOSOME. THIS FILE, 1PNU, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT, MRNA, P-SITE TRNA, AND A-SITE TRNA ARE IN THE PDB FILE 1PNS. X-RAY DIFFRACTION 7-15-03 A.VILA-SANJURJO,W.K.RIDGEWAY,V.SEYMANER,W.ZHANG,S.SANTOSO, K.YU,J.H.D.CATE S RIBOSOMAL SUBUNIT, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, RIBOSOME 8.70 ESCHERICHIA COLI,ESCHERICHIA COLI 4B3M STRUCTURE OF RIBOSOME 30S-ETH-07 COMPLEX X-RAY DIFFRACTION 8-07-13 C.L.NG,K.LANG,D.SHCHERBAKOV,T.MATT,D.PEREZ-FERNANDEZ,R.PATAK,M.MEYER, S.DUSCHA,R.AKBERGENOV,H.BOUKARI,P.FREIHOFER,I.KUDYBA,M.S.K.REDDY, R.S.NANDURIKAR,V.RAMAKRISHNAN,A.VASELLA,E.C.BOTTGER RIBOSOME, ANTIBIOTIC 2.90 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 1NBR IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES SOLUTION NMR 3-04-03 S.A.MCCALLUM,A.PARDI RIBONUCLEIC ACID, RNA, HAIRPIN, TRANSLATIONAL REGULATION synthetic 4MGN CO-CRYSTAL STRUCTURE OF THE G. KAUSTOPHILUS GLYQS T BOX RIBOSWITCH STEM I IN COMPLEX WITH TRNA X-RAY DIFFRACTION 10-23-13 J.C.GRIGG,A.KE RNA-RNA COMPLEX, BASE STACKING, T-LOOP, RNA BINDING, RNA 3.20 synthetic,synthetic 2GIS STRUCTURE OF THE S-ADENOSYLMETHIONINE RIBOSWITCH MRNA REGULATORY ELEMENT X-RAY DIFFRACTION 7-04-06 R.K.MONTANGE,R.T.BATEY MRNA, RIBOSWITCH, S-ADENOSYLMETHIONINE, SAM, RNA-LIGAND COMPLEX 2.90 synthetic 3ULD HIGH RESOLUTION STRUCTURE OF DNA/RNA HYBRID IN COMPLEX WITH RNASE H CATALYTIC DOMAIN D132N MUTANT X-RAY DIFFRACTION 11-14-12 J.H.GAN,R.ABDUR,Z.HUANG RNASE H, DNA/RNA HYBRID, ENDONUCLEASE, HYDROLASE, MAGNESIUM, RIBONUCLEASE H, HYDROLASE-RNA-DNA COMPLEX 1.60 synthetic 3BO0 RIBOSOME-SECY COMPLEX ELECTRON MICROSCOPY 12-09-08 C.W.AKEY,J.F.MENETRET RIBOSOME-SECY COMPLEX, PROTEIN TRANSLOCATION 9.60 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1KQ2 CRYSTAL STRUCTURE OF AN HFQ-RNA COMPLEX X-RAY DIFFRACTION 7-05-02 M.A.SCHUMACHER,R.F.PEARSON,T.MOLLER,P.VALENTIN-HANSEN, R.G.BRENNAN HFQ-RNA COMPLEX, SINGLE-STRANDED RNA, TRANSLATIONAL REGULATOR, TRANSLATION/RNA COMPLEX 2.71 synthetic 3Q1Q STRUCTURE OF A BACTERIAL RIBONUCLEASE P HOLOENZYME IN COMPLEX WITH TRNA X-RAY DIFFRACTION 3-09-11 N.J.REITER,A.OSTERMAN,A.TORRES-LARIOS,K.K.SWINGER,T.PAN,A.MONDRAGON RNASE P, RIBOZYME, RIBONUCLEASE P, TRNA, PRE-TRNA, TETRALOOP- RECEPTOR, RIBOSE ZIPPER, A-MINOR INTERACTION, BASE STACKING, INTERMOLECULAR BASE PAIRS, INTERMOLECULAR RNA-RNA CONTACTS, RNP, RIBONUCLEOPROTEIN COMPLEX, ENZYME-PRODUCT COMPLEX, METALLOENZYME, RNA-METAL INTERACTIONS, SHAPE COMPLEMENTARITY, HYDROLASE-RNA COMPLEX, ENDONUCLEASE 3.80 synthetic,synthetic 3ZD7 SNAPSHOT 3 OF RIG-I SCANNING ON RNA DUPLEX X-RAY DIFFRACTION 8-07-13 D.LUO,A.M.PYLE HYDROLASE-RNA COMPLEX, HELICASE, INNATE IMMUNITY 2.50 SYNTHETIC CONSTRUCT 3OAR CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO TELITHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 12-15-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, TELITHROMYCIN, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX 3.25 ESCHERICHIA COLI 3D0M X-RAY STRUCTURES OF THE (GUGGUCUGAUGAGGCC) RNA DUPLEX X-RAY DIFFRACTION 9-09-08 W.RYPNIEWSKI,D.A.ADAMIAK,J.MILECKI,R.W.ADAMIAK RNA, DUPLEX, BASE PAIRING, G(SYN) - G(ANTI), SULPHATE ANION 2.00 synthetic 1VQ9 THE STRUCTURE OF CCA-PHE-CAP-BIO AND THE ANTIBIOTIC SPARSOMYCIN BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 3OGE STRUCTURE OF THE THERMUS THERMOPHILUS RIBOSOME COMPLEXED WITH CHLORAMPHENICOL. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, CHLORAMPHENICOL, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS 3AVX STRUCTURE OF VIRAL RNA POLYMERASE COMPLEX 5 X-RAY DIFFRACTION 1-18-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 2.41 synthetic,synthetic 2JLX DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP- VANADATE X-RAY DIFFRACTION 11-25-08 D.H.LUO,T.XU,R.P.WATSON,D.S.BECKER,A.SAMPATH,W.JAHNKE, S.S.YEONG,C.H.WANG,S.P.LIM,S.G.VASUDEVAN,J.LESCAR HYDROLASE RNA COMPLEX, ENVELOPE PROTEIN, RIBONUCLEOPROTEIN, CAPSID PROTEIN, RNA REPLICATION, SERINE PROTEASE, GLYCOPROTEIN, DENGUE VIRUS, METAL-BINDING, TRANSFERASE, ATP-BINDING, RNA-BINDING, FLAVIVIRUSES, TRANSCRIPTION REGULATION, RNA-DIRECTED RNA POLYMERASE, NUCLEOTIDE-BINDING, VIRAL NUCLEOPROTEIN, SECRETED, HELICASE, VANADATE, PROTEASE, HYDROLASE, CLEAVAGE ON PAIR OF BASIC RESIDUES, ENDOPLASMIC RETICULUM, NUCLEOTIDYLTRANSFERASE, ADP, SSRNA, VIRION, ATPASE, NUCLEUS, MEMBRANE, TRANSMEMBRANE, TRANSCRIPTION, PHOSPHOPROTEIN, NS3 HELICASE STRUCTURE, MULTIFUNCTIONAL ENZYME 2.20 synthetic 3KNK THE STRUCTURES OF VIOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE II. X-RAY DIFFRACTION 2-16-10 R.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, VIOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 1P6V CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TRANSFER-MESSENGER RNA IN COMPLEX WITH SMPB X-RAY DIFFRACTION 8-12-03 S.GUTMANN,P.W.HAEBEL,L.METZINGER,M.SUTTER,B.FELDEN,N.BAN SMPB, TMRNA, TRANS-TRANSLATION, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX 3.20 synthetic 2EET GUANINE RIBOSWITCH A21G, U75C MUTANT BOUND TO HYPOXANTHINE X-RAY DIFFRACTION 11-13-07 S.D.GILBERT,A.L.EDWARDS,R.T.BATEY MRNA, RIBOSWITCH, HYPOXANTHINE, GUANINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, THREE-WAY JUNCTION, BASE TRIPLE 1.95 synthetic 2EVY GNYA TETRANUCLEOTIDE LOOPS FOUND IN POLIOVIRUS ORIL BY IN VIVO SELEX (UN)EXPECTEDLY FORM A YNMG-LIKE STRUCTURE SOLUTION NMR 8-22-06 W.J.G.MELCHERS,J.ZOLL,M.TESSARI,D.V.BAKHMUTOV,A.P.GMYL, V.I.AGOL,H.A.HEUS POLIOVIRUS, 5'NTR, CLOVERLEAF, GNYA TETRANUCLEOITDE LOOP, RNA synthetic 1QVG STRUCTURE OF CCA OLIGONUCLEOTIDE BOUND TO THE TRNA BINDING SITES OF THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-11-03 T.M.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 1XWP SOLUTION STRUCTURE OF AUCGCA LOOP SOLUTION NMR 2-15-05 T.SAKAMOTO,A.OGURO,G.KAWAI,T.OHTSU,Y.NAKAMURA HAIRPIN LOOP, RNA synthetic 1EFO CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG) X-RAY DIFFRACTION 5-29-00 C.SUDARSANAKUMAR,Y.XIONG,M.SUNDARALINGAM X-RAY STRUCTURE, A-FORM CONFORMATION, HYBRID, ADENINE BULGE, LOOPED OUT, DNA/RNA COMPLEX, DNA-RNA HYBRID 2.30 synthetic 2GCS PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA; RIBOZYME; PSEUDOKNOT; HELIX 2.10 synthetic,synthetic 3B5A CRYSTAL STRUCTURE OF A MINIMALLY HINGED HAIRPIN RIBOZYME INCORPORATING A38G MUTATION WITH A 2'OME MODIFICATION AT THE ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME, 2'O-METHYL, RIBOZYME, RNA 2.35 synthetic,synthetic,synthetic 2WRO THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA (PART 2 OF 4). X-RAY DIFFRACTION 10-20-09 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, ELONGATION FACTOR G, TRANSLOCATION, TRANSLATION, PROTEIN SYNTHESIS, EF-TU, GTPASE 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1YI2 CRYSTAL STRUCTURE OF ERYTHROMYCIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-26-05 D.TU,G.BLAHA,P.B.MOORE,T.A.STEITZ ERYTHROMYCIN, ANTIBIOTIC COMPLEXES, MUTATED 50S SUBUNITS, RIBOSOME 2.65 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3ZND THE CRYSTAL STRUCTURE OF AGMATIDINE TRNA-ILE2 BOUND TO THE 70S RIBOSOME IN THE A AND P SITE. X-RAY DIFFRACTION 4-03-13 R.M.VOORHEES,D.MANDAL,C.NEUBAUER,C.KOEHRER,U.L.RAJBHANDARY, V.RAMAKRISHNAN RIBOSOME, AGMATIDINE, TRNA, TRNAILE2 3.10 THERMUS THERMOPHILUS,HALOARCULA MARISMORTUI,ESCHERICHIA COLI,HALOARCULA MARISMORTUI 3QJL ONE RAMP PROTEIN BINDING DIFFERENT RNA SUBSTRATES X-RAY DIFFRACTION 2-08-12 R.WANG,H.ZHENG,G.PREAMPLUME,H.LI FERRIDOXIN FOLD, WORK IN IMMUNE SYSTEM IN PROKARYOTES, IMMUNE SYSTEM- RNA COMPLEX 2.70 synthetic 1FCW TRNA POSITIONS DURING THE ELONGATION CYCLE ELECTRON MICROSCOPY 8-11-00 R.K.AGRAWAL,C.M.T.SPAHN,P.PENCZEK,R.A.GRASSUCCI, K.H.NIERHAUS,J.FRANK RIBOSOME, TRNA BINDING SITES, PROTEIN SYNTHESIS, ELONGATION CYCLE, CRYO-ELECTRON MICROSCOPY 17.00 SACCHAROMYCES CEREVISIAE 4KDA S RIBOSOME TRANSLOCATION INTERMEDIATE FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT B. THE 50S SUBUNIT A CAN BE FOUND IN 4KDB. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KD8 (30S) AND 4KD9 (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 2O3V CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE COMPLEXED WITH PAROMAMINE DERIVATIVE NB33 X-RAY DIFFRACTION 11-06-07 J.KONDO,M.HAINRICHSON,I.NUDELMAN,D.SHALLOM-SHEZIFI,T.BAASOV, E.WESTHOF AMINOGLYCOSIDE, ANTIBIOTICS, RIBOSOME, DECODING SITE, HOMO SAPIENS, EUKARYOTE, CYTOPLASMIC, TRANSLATION INHIBITION, STOP CODON READTHROUGH, RNA 2.80 synthetic 2BS1 MS2 (N87AE89K MUTANT) - QBETA RNA HAIRPIN COMPLEX X-RAY DIFFRACTION 3-22-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, ICOSAHEDRAL VIRUS 2.8 BACTERIOPHAGE MS2 1HHW SOLUTION STRUCTURE OF LNA1:RNA HYBRID SOLUTION NMR 5-30-02 M.PETERSEN,K.BONDENSGAARD,J.WENGEL,J.P.JACOBSEN ANTISENSE, LOCKED NUCLEIC ACID, DNA, RNA, HYBRID, RNASE H synthetic 4B3S STRUCTURE OF RIBOSOME 30S-ETH-RP07 COMPLEX X-RAY DIFFRACTION 8-07-13 C.L.NG,K.LANG,D.SHCHERBAKOV,T.MATT,D.PEREZ-FERNANDEZ,R.PATAK,M.MEYER, S.DUSCHA,R.AKBERGENOV,H.BOUKARI,P.FREIHOFER,I.KUDYBA,M.S.K.REDDY, R.S.NANDURIKAR,V.RAMAKRISHNAN,A.VASELLA,E.C.BOTTGER RIBOSOME, ANTIBIOTIC 3.15 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 2UXB CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. X-RAY DIFFRACTION 7-31-07 C.M.DUNHAM,M.SELMER,S.S.PHELPS,A.C.KELLEY,T.SUZUKI,S.JOSEPH, V.RAMAKRISHNAN RIBONUCLEOPROTEIN, 30S RIBOSOMAL SUBUNIT, FRAMESHIFT SUPPRESSOR TRNA, TRNA, ZINC, MRNA, CODON, A SITE, RIBOSOME, DECODING, METAL-BINDING, MESSENGER RNA, RIBOSOMAL PROTEIN, RNA-BINDING, COILED COIL, PAROMOMYCIN, RNA- BINDING, ANTICODON, STEM-LOOP, FRAMESHIFT, ZINC-FINGER, RRNA-BINDING, TRNA-BINDING, TRANSFER RNA 3.1 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2J37 MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS ELECTRON MICROSCOPY 11-08-06 M.HALIC,M.BLAU,T.BECKER,T.MIELKE,M.R.POOL,K.WILD,I.SINNING, R.BECKMANN RIBOSOME, SRP, TRANSLATION/RNA 8.00 HALOARCULA MARISMORTUI,TRITICUM SP. 2Q1O CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGC-NF2- AAUUGGCG, WITH AN INCORPORATED 2,4-DIFLUOROTOLUYL RESIDUE (NF2) X-RAY DIFFRACTION 10-30-07 F.LI,P.S.PALLAN ,4-DIFLUOROTOLUYL NUCLEOSIDE, CHEMICAL MODIFICATION, RNA, RNAI, HYDROGEN BOND 1.10 synthetic 1FIR CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) X-RAY DIFFRACTION 1-17-01 P.BENAS,P.DUMAS MAMMALIAN TRANSFERT RIBONUCLEIC ACID, HIV-1 PRIMER TRNA, AMINO ACID TRANSPORT, CANONICAL TRNA STRUCTURE, CANONICAL ANTICODON, FRAMESHIFTING, CODON/ANTICODON MIMICRY, MODIFIED BASES 3.30 BOS TAURUS 2RP1 REFINED SOLUTION STRUCTURE OF THE PEMV-1 MRNA PSEUDOKNOT, REGULARIZED AVERAGE STRUCTURE SOLUTION NMR 3-31-09 P.V.CORNISH,M.HENNIG,D.P.GIEDROC RNA PSEUDOKNOT, FRAMESHIFTING synthetic 4ABS COMPLEX OF SMPB, A TMRNA FRAGMENT AND EF-TU-GDP-KIRROMYCIN WITH THE 70S RIBOSOME X-RAY DIFFRACTION 3-28-12 C.NEUBAUER,R.GILLET,A.C.KELLEY,V.RAMAKRISHNAN TMRNA, RIBOSOME, SMPB, EF-TU 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3SQX STRUCTURE OF MSS116P (NTE AND C-TAIL DOUBLE DELETION) BOUND TO SSRNA AND AMP-PNP X-RAY DIFFRACTION 10-12-11 M.DEL CAMPO,A.M.LAMBOWITZ RECA FOLD, RNA DEPENDENT ATPASE, RNA HELICASE, DEAD-BOX PROTEIN, MITOCHONDRION, HYDROLASE-RNA COMPLEX 2.11 synthetic 1DQH CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS X-RAY DIFFRACTION 11-13-00 Y.XIONG,M.SUNDARALINGAM DOUBLE HELIX, CYTOSINE BULGE, RNA 1.70 synthetic,synthetic 1PBL STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE SOLUTION NMR 7-07-97 M.POPENDA,E.BIALA,J.MILECKI,R.W.ADAMIAK RIBONUCLEIC ACID, RNA DUPLEX synthetic 2OJ8 NMR STRUCTURE OF THE UGUU TETRALOOP OF DUCK EPSILON APICAL STEM LOOP OF THE HEPATITIS B VIRUS SOLUTION NMR 5-22-07 F.C GIRARD,O.M.OTTINK,K.A.M.AMPT,M.TESSARI,S.S.WIJMENGA HBV, RNA, EPSILON, DUCK, NMR, UGUU, TETRALOOP synthetic 4G5U CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TIGECYCLINE. THIS ENTRY CONTAINS THE 50S SUBUNIT OF MOLECULE A. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2JA7 CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX C X-RAY DIFFRACTION 2-20-07 F.BRUECKNER,U.HENNECKE,T.CARELL,P.CRAMER DNA-DIRECTED RNA POLYMERASE, LESION RECOGNITION, TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING, PHOTOLESION, PHOSPHORYLATION, MISINCORPORATION, RNA POLYMERASE II, TRANSCRIPTION-COUPLED REPAIR, CYCLOBUTANE PYRIMIDINE DIMER, TCR, CPD, ZINC, ARREST, STALLING, DNA LESION, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, NUCLEOTIDYLTRANSFERASE, DAMAGE RECOGNITION, ELONGATION COMPLEX, TRANSFERASE, THYMINE DIMER, TRANSCRIPTION 3.8 SACCHAROMYCES CEREVISIAE 2I82 CRYSTAL STRUCTURE OF PSEUDOURIDINE SYNTHASE RLUA: INDIRECT SEQUENCE READOUT THROUGH PROTEIN-INDUCED RNA STRUCTURE X-RAY DIFFRACTION 11-21-06 C.HOANG PSEUDOURIDINE SYNTHASE, LYASE/RNA COMPLEX 2.05 synthetic 3J0W STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (50S RIBOSOME OF CLASS 4A OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 14.70 ESCHERICHIA COLI,ESCHERICHIA COLI 3I56 CO-CRYSTAL STRUCTURE OF TRIACETYLOLEANDOMCYIN BOUND TO THE LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 3-09-10 G.GUREL,G.BLAHA,T.A.STEITZ,P.B.MOORE LARGE RIBOSOMAL SUBUNIT, TRIACETYLOLEANDOMCYIN, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, ACETYLATION, RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX 2.90 HALOARCULA MARISMORTUI ATCC 43049,HALOARCULA MARISMORTUI 4DV6 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, A915G X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME 3.30 THERMUS THERMOPHILUS 4M7D CRYSTAL STRUCTURE OF SCPLICEOSOMAL U6 SNRNP CORE COMPLEX X-RAY DIFFRACTION 11-13-13 L.ZHOU,J.HANG,Y.ZHOU,R.WAN,G.LU,C.YAN,Y.SHI SM LIKE FOLD, RNA SPLICING, STRUCTURAL PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN 2.60 synthetic 1YN2 SOLUTION STRUCTURE OF THE NEUROSPORA VS RIBOZYME STEM-LOOP V IN THE PRESENCE OF MGCL2 WITH MODELING OF BOUND MANGANESE IONS SOLUTION NMR 1-24-06 D.O.CAMPBELL,P.LEGAULT U-TURN; HAIRPIN; MAGNESIUM IONS; MANGANESE IONS; PARAMAGNETIC, RNA synthetic 1CX5 ANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONE SOLUTION NMR 9-14-99 X.YANG,X.HAN,C.CROSS,Y.SANGHVI,X.GAO ANTISENSE, DNA/RNA HYBRID, NMR, MODIFIED BACKBONE LINKER, DNA-RNA HYBRID synthetic 3PU0 CRYSTAL STRUCTURE OF A VESICULAR STOMATITIS VIRUS NUCLEOCAPSID-POLYC COMPLEX X-RAY DIFFRACTION 1-12-11 M.LUO,T.J.GREEN,M.ROWSE RNA, NUCLEOCAPSID, VIRAL PROTEIN-RNA COMPLEX 3.09 synthetic 1OLN MODEL FOR THIOSTREPTON ANTIBIOTIC BINDING TO L11 SUBSTRATE FROM 50S RIBOSOMAL RNA SOLUTION NMR; THEORETICAL MODEL 9-11-03 G.LENTZEN,R.KLINCK,N.MATASSOVA,F.ABOUL-ELA,A.I.H.MURCHIE THIAZOLE, ANTIBIOTIC, RIBOSOME, THIOSTREPTON, RNA, L11, 50S, TRANSLATION INHIBITION THERMOTOGA MARITIMA 4FWT COMPLEX STRUCTURE OF VIRAL RNA POLYMERASE FORM III X-RAY DIFFRACTION 8-08-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 3.20 synthetic,synthetic 3OI3 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH TELITHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, TELITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3ND4 WATSON-CRICK 16-MER DSRNA X-RAY DIFFRACTION 9-21-11 B.H.MOOERS,A.SINGH DOUBLE-STRANDED RNA, RNA, 16 BASE PAIR RNA 1.52 synthetic 3PYV CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 OF CRPV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1KUQ CRYSTAL STRUCTURE OF T3C MUTANT S15 RIBOSOMAL PROTEIN IN COMPLEX WITH 16S RRNA X-RAY DIFFRACTION 6-24-03 A.D.NIKULIN,S.TISHCHENKO,S.REVTOVICH,B.EHRESMANN, C.EHRESMANN,P.DUMAS,M.GARBER,S.NIKONOV,N.NEVSKAYA RRNA-PROTEIN COMPLEX, RIBOSOME 2.84 THERMUS THERMOPHILUS 4DUZ CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, U13C, BOUND WITH STREPTOMYCIN X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.65 THERMUS THERMOPHILUS 1VT2 CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CEM-101. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 10-06-10 J.A.DUNKLE,W.ZHANG,J.H.D.CATE,A.S.MANKIN PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, MACROLIDE, KETOLIDE, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, RIBOSOME 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI 1GUC SOLUTION NMR STRUCTURE OF AN RNA WITH TANDEM, SYMMETRIC GU MISMATCHES, 30 STRUCTURES SOLUTION NMR 2-12-97 J.A.MCDOWELL,D.H.TURNER RIBONUCLEIC ACID, G:U MISMATCH, RNA synthetic 2ADT NMR STRUCTURE OF A 30 KDA GAAA TETRALOOP-RECEPTOR COMPLEX. SOLUTION NMR 7-26-05 J.H.DAVIS,M.TONELLI,L.G.SCOTT,L.JAEGER,J.R.WILLIAMSON, S.E.BUTCHER GAAA TETRALOOP GAAA TETRALOOP-RECEPTOR, RNA synthetic 2DR7 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDC X-RAY DIFFRACTION 11-14-06 K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.80 synthetic 2TMV VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION FIBER DIFFRACTION 1-09-89 G.STUBBS,R.PATTANAYEK,K.NAMBA VIRUS, HELICAL VIRUS, VIRUS/RNA COMPLEX 2.90 synthetic 2IXZ SOLUTION STRUCTURE OF THE APICAL STEM-LOOP OF THE HUMAN HEPATITIS B VIRUS ENCAPSIDATION SIGNAL SOLUTION NMR 9-06-06 S.FLODELL,M.PETERSEN,F.GIRARD,J.ZDUNEK,K.KIDD-LJUNGGREN, J.SCHLEUCHER,S.S.WIJMENGA HBV, RDC, RNA, PSEUDO TRILOOP synthetic 1VOV CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI 2P7E VANADATE AT THE ACTIVE SITE OF A SMALL RIBOZYME SUGGESTS A ROLE FOR WATER IN TRANSITION-STATE STABILIZATION X-RAY DIFFRACTION 5-22-07 A.T.TORELLI,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME; VANADATE; REACTION INTERMEDIATE; TRANSITION-STATE STABILIZATION; ACTIVE SITE WATERS; INDUCED FIT, RNA 2.05 synthetic,synthetic,synthetic,synthetic 2Y9C STRUCTURE OF THE SPLICEOSOMAL U4 SNRNP CORE DOMAIN X-RAY DIFFRACTION 5-11-11 A.K.W.LEUNG,K.NAGAI,J.LI SPLICING-RNA COMPLEX, PRE-MRNA SPLICING, SPLICEOSOME, SNRNP BIOGENESIS, SM SITE, SM FOLD, HETEROMERIC HEPTAMERIC RING, RNA BINDING 3.60 HOMO SAPIENS 3HOU COMPLETE RNA POLYMERASE II ELONGATION COMPLEX I WITH A T-U MISMATCH X-RAY DIFFRACTION 7-28-09 J.F.SYDOW,F.BRUECKNER,A.C.M.CHEUNG,G.E.DAMSMA,S.DENGL, E.LEHMANN,D.VASSYLYEV,P.CRAMER RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, DNA-RNA MISMATCH, DNA- BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID COMPLEX 3.20 synthetic 1HC8 CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX X-RAY DIFFRACTION 5-23-02 G.L.CONN,D.E.DRAPER,E.E.LATTMAN,A.G.GITTIS RIBOSOME, RIBOSOMAL RNA, TERTIARY STRUCTURE, RNA-PROTEIN 2.8 ESCHERICHIA COLI 1TN2 CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA X-RAY DIFFRACTION 10-24-86 R.S.BROWN,J.C.DEWAN,A.KLUG T-RNA, SINGLE STRAND, LOOPS 3.00 SACCHAROMYCES CEREVISIAE 3S1N RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARIANT 2) X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.10 synthetic 4H6G CRYSTAL STRUCTURE OF RIFT VALLEY FEVER VIRUS NUCLEOCAPSID PROTEIN HEXAMER BOUND TO SINGLE-STRANDED RNA. THIS ENTRY CONTAINS THREE OUT OF SIX HEXAMERS BOUND TO RNA. X-RAY DIFFRACTION 11-07-12 D.D.RAYMOND,J.L.SMITH NUCLEOCAPSID PROTEIN, N PROTEIN, RIBONUCLEOPROTEIN, VIRAL NUCLEOPROTEIN, RNA BINDING, VIRUS, RNP, VIRAL PROTEIN-RNA COMPLEX 3.40 synthetic 4KJ4 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME, RIBOSOME- ANTIBIOTIC COMPLEX 2.90 ESCHERICHIA COLI 4FAQ STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF K+, CA2+ AND 5'-EXON X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, SPLICEOSOME, RNA 3.11 OCEANOBACILLUS IHEYENSIS 1TUT J4/5 LOOP FROM THE CANDIDA ALBICANS AND CANDIDA DUBLINIENSIS GROUP I INTRONS SOLUTION NMR 12-28-04 B.M.ZNOSKO,S.D.KENNEDY,P.C.WILLE,T.R.KRUGH,D.H.TURNER RNA, NMR, INTERNAL LOOP, TANDEM MISMATCH, GU PAIRS, AA PAIRS synthetic,synthetic 3OXM CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, TL-ACETATE SOAKED X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 2.95 synthetic,synthetic 2PXQ VARIANT 14 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.50 synthetic 1ZO1 IF2, IF1, AND TRNA FITTED TO CRYO-EM DATA OF E. COLI 70S INITIATION COMPLEX ELECTRON MICROSCOPY 6-14-05 G.S.ALLEN,A.ZAVIALOV,R.GURSKY,M.EHRENBERG,J.FRANK E. COLI, RIBOSOME, INITIATION OF PROTEIN SYNTHESIS, INITIATION FACTOR, CRYO-ELETRON MICROSCOPY, TRANSLATION/RNA COMPLEX 13.80 ESCHERICHIA COLI 4FTE CRYSTAL STRUCTURE OF THE D75N MUTANT CAPSID OF FLOCK HOUSE VIRUS X-RAY DIFFRACTION 8-01-12 J.A.SPEIR,Z.CHEN,V.S.REDDY,J.E.JOHNSON VIRUS, FLOCK HOUSE VIRUS, NODAVIRUS, RNA, BETA-BARREL, JELLYROLL, ASPARTYL PROTEASE, CAPSID PROTEIN, HYDROLASE, AUTOPROTEOLYSIS, VIRION, ICOSAHEDRAL VIRUS 3.50 SPODOPTERA FRUGIPERDA 310D CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.3 A RESOLUTION. HYDRATION PATTERN OF 2'-O-METHYLATED RNA X-RAY DIFFRACTION 6-24-97 D.A.ADAMIAK,J.MILECKI,R.W.ADAMIAK,Z.DAUTER,W.R.RYPNIEWSKI A-RNA, DOUBLE HELIX, MODIFIED 1.30 engineered 3TS2 MOUSE LIN28A IN COMPLEX WITH LET-7G MICRORNA PRE-ELEMENT X-RAY DIFFRACTION 11-16-11 Y.NAM,P.SLIZ MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC ZINC KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX 2.01 synthetic 3ZEQ HIGH-RESOLUTION CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE TRYPANOSOMA BRUCEI RIBOSOME ELECTRON MICROSCOPY 2-13-13 Y.HASHEM,A.DES GEORGES,J.FU,S.N.BUSS,F.JOSSINET,A.JOBE,Q.ZHANG, H.Y.LIAO,R.A.GRASSUCCI,C.BAJAJ,E.WESTHOF,S.MADISON-ANTENUCCI, J.FRANK RIBOSOME, KINETOPLASTIDS, EXPANSION SEGMENTS 5.57 TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI 3UZ6 STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-TYR COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 2LI8 THE SOLUTION STRUCTURE OF THE LIN28-ZNF DOMAINS BOUND TO AGGAGAU OF PRE-LET-7 MIRNA SOLUTION NMR 12-07-11 F.H.-T.ALLAIN,F.E.LOUGHLIN ZINC FINGER, MICRO RNA, TRANSCRIPTION-RNA COMPLEX synthetic 4BYB STRUCTURE OF THERMUS THERMOPHILUS 30S RIBOSOME X-RAY DIFFRACTION 8-28-13 S.FENG,Y.CHEN,K.KAMADA,H.WANG,K.TANG,M.WANG,Y.G.GAO RIBOSOME, TOXIN-ANTITOXIN, RIBOSOME-DEPENDENT NUCLEASE, MRNA DEGRADATION, TRANSLATION REGULATION 3.35 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,SYNTHETIC CONSTRUCT 2VUM ALPHA-AMANITIN INHIBITED COMPLETE RNA POLYMERASE II ELONGATION COMPLEX X-RAY DIFFRACTION 6-17-08 F.BRUECKNER,P.CRAMER TRANSFERASE, DNA-DIRECTED RNA POLYMERASE, ALPHA-AMANITIN, UBL CONJUGATION, NUCLEAR PROTEIN, RNA POLYMERASE II, ELONGATION COMPLEX, MRNA PROCESSING, PHOSPHORYLATION, ENZYME INHIBITION, DNA DAMAGE, DNA REPAIR, ZINC-FINGER, DNA-BINDING, TRANSFERASE/DNA/RNA, TRANSCRIPTION BUBBLE, ZINC, NUCLEUS, CYTOPLASM, INHIBITOR, MAGNESIUM, TRANSCRIPTION INHIBITION, TRANSLOCATION INTERMEDIATE, TRANSCRIPTION, METAL-BINDING, PHOSPHOPROTEIN, INTERMEDIATE, FUNGAL TOXIN, POLYMORPHISM, NUCLEOTIDYLTRANSFERASE, TRANSCRIPTION MECHANISM 3.40 synthetic 2QBI CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH GENTAMICIN AND RRF BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1P9X THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC X-RAY DIFFRACTION 8-05-03 R.BERISIO,J.HARMS,F.SCHLUENZEN,R.ZARIVACH,H.A.HANSEN, P.FUCINI,A.YONATH RIBOSOMES, TRNA, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT- TUNNEL, BLOCKAGE 3.40 DEINOCOCCUS RADIODURANS 2YKR S RIBOSOMAL SUBUNIT WITH RSGA BOUND IN THE PRESENCE OF GMPPNP ELECTRON MICROSCOPY 8-24-11 Q.GUO,Y.YUAN,Y.XU,B.FENG,L.LIU,K.CHEN,J.LEI,N.GAO RIBOSOME-HYDROLASE COMPLEX, RIBOSOME BIOGENESIS, YJEQ, CIRCULARLY PERMUTATED GTPASE 9.80 ESCHERICHIA COLI 4KFI CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND WITH THE Q253P MUTANT OF RELEASE FACTOR RF2. 50S OF THE A SUBUNIT X-RAY DIFFRACTION 7-03-13 N.SANTOS,J.ZHU,J.P.DONOHUE,A.A.KOROSTELEV,H.F.NOLLER RIBOSOME, RELEASE FACTOR 2 MUTANT 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3KIW STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (POSTCLEAVAGE STATE; PART 2 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,V.RAMAKRISHNAN RIBOSOME, TRANSLATIONAL CONTROL, RELBE, TOXIN-ANTITOXIN, ENDONUCLEASE, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC 3.60 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 1ZBN SOLUTION STRUCTURE OF BIV TAR HAIRPIN COMPLEXED TO JDV TAT ARGININE-RICH MOTIF SOLUTION NMR 4-19-05 V.CALABRO,M.D.DAUGHERTY,A.D.FRANKEL RNA-PEPTIDE COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX synthetic 1XOK CRYSTAL STRUCTURE OF ALFALFA MOSAIC VIRUS RNA 3'UTR IN COMPLEX WITH COAT PROTEIN N TERMINAL PEPTIDE X-RAY DIFFRACTION 1-04-05 L.M.GUOGAS,D.J.FILMAN,J.M.HOGLE,L.GEHRKE PROTEIN-RNA COMPLEX, ALPHA HELIX, ATYPICAL RNA DUPLEX, VIRAL PROTEIN/RNA COMPLEX 3.00 synthetic,synthetic 2KRQ SOLUTION STRUCTURE OF THE TRNA-ARG2 (ICG) ASL. SOLUTION NMR 12-01-10 Y.BILBILLE,P.F.AGRIS RNA, MODIFICATION, TRNA, INOSINE, ASL synthetic 3OHK STRUCTURE OF THE THERMUS THERMOPHILUS RIBOSOME COMPLEXED WITH ERYTHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, ERYTHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3ADD CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 3) X-RAY DIFFRACTION 7-28-10 Y.ITOH,S.CHIBA,S.SEKINE,S.YOKOYAMA PROTEIN-RNA COMPLEX, TRNA, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, TRANSFERASE, TRANSFERASE-RNA COMPLEX 2.40 METHANOPYRUS KANDLERI 4A1A T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 5S RRNA, 5.8S RRNA AND PROTEINS OF MOLECULE 3. X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN EUKARYOTIC RIBOSOME, RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA,TETRAHYMENA THERMOPHILA 3ORA CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CEM-101. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 10-06-10 J.A.DUNKLE,W.ZHANG,J.H.D.CATE,A.S.MANKIN PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ERYTHROMYCIN, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.30 ESCHERICHIA COLI 3BOY CRYSTAL STRUCTURE OF THE HUTP ANTITERMINATION COMPLEX BOUND TO THE HUT MRNA X-RAY DIFFRACTION 1-15-08 T.S.KUMAREVEL,D.BALASUNDARESAN,J.JEYAKANTHAN,A.SHINKAI, S.YOKOYAMA,P.K.R.KUMAR,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) HUTP, RNA-BINDING, HUTP-RNA COMPLEX, ANTI-TERMINATION, TRANSCRIPTION REGULATION, ACTIVATOR, HISTIDINE METABOLISM, TRANSCRIPTION/RNA COMPLEX, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI 1.70 BACILLUS SUBTILIS 2KVN PHI29 E-LOOP HAIRPIN SOLUTION NMR 7-07-10 S.M.HARRIS,S.J.SCHROEDER PHI29, HAIRPIN, RNA synthetic 1HMH THREE-DIMENSIONAL STRUCTURE OF A HAMMERHEAD RIBOZYME X-RAY DIFFRACTION 12-07-95 H.W.PLEY,K.M.FLAHERTY,D.B.MCKAY DNA-RNA HAMMERHEAD RIBOZYME, LOOP 2.60 engineered 3J29 DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 14.00 ESCHERICHIA COLI 2NPY CRYSTAL STRUCTURE OF A JUNCTIONED HAIRPIN RIBOZYME INCORPORATING 9ATOM LINKER AND 2'-DEOXY 2'-AMINO U AT A-1 X-RAY DIFFRACTION 8-14-07 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME, MUTATION, S-TURN, E-LOOP, RIBOSE ZIPPER, CATALYTIC RNA, 2'-DEOXY 2'-AMINO, 9S LINKER 2.65 synthetic,synthetic,synthetic,synthetic 4KDK S RIBOSOME TRANSLOCATION INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT B CAN BE FOUND IN 4KDJ. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDG (30S) AND 4KDH (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA 4.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2R22 STRUCTURE OF THE NATIVE RNA TRIDECAMER R(GCGUUUGAAACGC) AT 1.5 A (NATMN) X-RAY DIFFRACTION 9-25-07 Y.TIMSIT,S.BOMBARD MONOVALENT, ELECTROSTATIC, ASYMMETRY, MANGANESE, RNA 1.40 synthetic 3TRZ MOUSE LIN28A IN COMPLEX WITH LET-7D MICRORNA PRE-ELEMENT X-RAY DIFFRACTION 11-16-11 Y.NAM,P.SLIZ MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC ZINC KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX 2.90 synthetic 4EI1 CRYSTAL STRUCTURE OF HUMAN ARGONAUTE2 X-RAY DIFFRACTION 5-02-12 N.T.SCHIRLE,I.J.MACRAE RNA INTERFERENCE, PROTEIN-RNA COMPLEX, AGO, HYDROLASE-RNA COMPLEX 2.30 HOMO SAPIENS 1VTQ THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION X-RAY DIFFRACTION 7-13-11 M.B.COMARMOND,R.GIEGE,J.C.THIERRY,D.MORAS,J.FISCHER T-RNA, SINGLE STRAND, LOOPS, RNA 3.00 479D CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION X-RAY DIFFRACTION 5-15-00 Y.XIONG,M.SUNDARALINGAM A-T-RNA, DOUBLE HELIX, DNA/RNA HYBRID 1.90 synthetic 1GRZ A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME X-RAY DIFFRACTION 11-24-98 B.L.GOLDEN,A.R.GOODING,E.R.PODELL,T.R.CECH RIBOZYME STRUCTURE, RRNA GROUP I INTRON 5.00 TETRAHYMENA THERMOPHILA 1EG0 FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME ELECTRON MICROSCOPY 3-06-00 I.S.GABASHVILI,R.K.AGRAWAL,C.M.T.SPAHN,R.A.GRASSUCCI, D.I.SVERGUN,J.FRANK,P.PENCZEK S RIBOSOME, LOW RESOLUTION MODEL 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3BNT CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE IN THE PRESENCE OF [CO(NH3)6]CL3 (A1555G MUTANT, BR-DERIVATIVE) X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 2.30 synthetic 2VQE MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING X-RAY DIFFRACTION 4-29-08 S.KURATA,A.WEIXLBAUMER,T.OHTSUKI,T.SHIMAZAKI,T.WADA, Y.KIRINO,K.TAKAI,K.WATANABE,V.RAMAKRISHNAN,T.SUZUKI TRNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC-FINGER, TRANSLATION, COILED COIL, PAROMOMYCIN, TRNA, ZINC, MRNA, CMO5U, RIBOSOME, RNA-BINDING, MODIFIACTIONS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN 2.5 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2KY0 THE STRUCTURE OF RNA INTERNAL LOOPS WITH TANDEM AG PAIRS: 5'GAGC/3'CGAG SOLUTION NMR 6-02-10 N.B.HAMMOND,S.D.KENNEDY,D.H.TURNER TANDEM AG PAIRS, THERMODYNAMICS, IMINO AG PAIR, DUAL SYN GG PAIR, EXTRAHELICAL U, RNA synthetic 4EN5 CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, TL-ACETATE SOAKED X-RAY DIFFRACTION 5-09-12 A.R.REN,K.R.RAJASHANKAR,D.J.PATEL PSEUDOKNOT, RNA 2.96 THERMOTOGA PETROPHILA 1S77 T7 RNAP PRODUCT PYROPHOSPHATE ELONGATION COMPLEX X-RAY DIFFRACTION 3-23-04 Y.W.YIN,T.A.STEITZ T7 RNA POLYMERASE, TRANSFERASE 2.69 synthetic 1FYO EUKARYOTIC DECODING REGION A-SITE RNA SOLUTION NMR 3-14-01 S.R.LYNCH,J.D.PUGLISI STEM-INTERNAL LOOP-STEM-TETRALOOP RNA, G-A BASE PAIR, BULGED A synthetic 4E8Q STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN A LIGAND-FREE STATE IN THE PRESENCE OF TL+ AND MG2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, METALLOENZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA 2.84 OCEANOBACILLUS IHEYENSIS 2KRY SOLUTION STRUCTURE OF THE HUMAN MITOCHONDRIAL TRNAMET ASL CONTAINING THE 5-FORMYLCYTIDINE MODIFICATION IN POSITION 34 SOLUTION NMR 8-18-10 Y.BILBILLE,P.F.AGRIS RNA, TRNA, 5-FORMYLCYTIDINE, ASL, MODIFICATION synthetic 1QRT GLUTAMINYL-TRNA SYNTHETASE MUTANT D235G COMPLEXED WITH GLUTAMINE TRANSFER RNA X-RAY DIFFRACTION 12-07-96 J.G.ARNEZ,T.A.STEITZ AMINOACYL-TRNA SYNTHASE, PROTEIN BIOSYNTHESIS, LIGASE, ATP- B, COMPLEX (AMINOACYL-TRNA SYNTHASE/TRNA), LIGASE/RNA COMPLEX 2.70 ESCHERICHIA COLI 4LG2 CRYSTAL STRUCTURE OF RESTON EBOLA VIRUS VP35 RNA BINDING DOMAIN BOUND TO 12-BP DSRNA X-RAY DIFFRACTION 7-10-13 S.BALE,J-P.JULIEN,Z.A.BORNHOLDT,A.S.KROIS,I.A.WILSON,SAPHIRE. E.O. RNA BINDING DOMAIN, DSRNA BINDING PROTEIN, DSRNA, RNA BINDING PROTEIN-RNA COMPLEX 2.70 synthetic 3HOV COMPLETE RNA POLYMERASE II ELONGATION COMPLEX II X-RAY DIFFRACTION 7-28-09 J.F.SYDOW,F.BRUECKNER,A.C.M.CHEUNG,G.E.DAMSMA,S.DENGL, E.LEHMANN,D.VASSYLYEV,P.CRAMER RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, DNA-RNA MISMATCH, DNA- BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSFERASE/DNA/RNA HYBRID COMPLEX, TRANSFERASE/DNA/RNA COMPLEX 3.50 synthetic 1MV1 THE TANDEM, SHEARED PA PAIRS IN 5'(RGGCPAGCCU)2 SOLUTION NMR 12-18-02 B.M.ZNOSKO,M.E.BURKARD,T.R.KRUGH,D.H.TURNER RIBONUCLEIC ACID, DUPLEX, TANDEM MISMATCH, PURINE, RNA synthetic 3S7C CRYSTAL STRUCTURE OF A 2'-AZIDO-URIDINE-MODIFIED RNA X-RAY DIFFRACTION 4-11-12 E.ENNIFAR,R.MICURA HAIRPIN RNA, RNA LABELLING, 2'-AZIDO-URIDINE, RNA 1.10 synthetic 1XP7 HIV-1 SUBTYPE F GENOMIC RNA DIMERIZATION INITIATION SITE X-RAY DIFFRACTION 10-18-05 E.ENNIFAR,P.DUMAS RNA, LOOP-LOOP COMPLEX, HIV-1 2.50 synthetic 3ZVO CRYSTAL STRUCTURE OF THE HYBRID STATE OF RIBOSOME IN COMPLEX WITH THE GUANOSINE TRIPHOSPHATASE RELEASE FACTOR 3 X-RAY DIFFRACTION 9-28-11 H.JIN,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, HYBRID STATE, P/E TRNA, GUANOSINE TRIPHOSPHATASE, RELEASE FACTOR 3 3.80 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI 2LEC SOLUTION STRUCTURE OF HUMAN SRSF2 (SC35) RRM IN COMPLEX WITH 5'- UGGAGU-3' SOLUTION NMR 11-23-11 G.M.DAUBNER,A.CLERY,S.JAYNE,J.STEVENIN,F.H.-T.ALLAIN SR PROTEIN, SPLICING FACTOR, RNA PROTEIN COMPLEX, RNA BINDING PROTEIN-RNA COMPLEX synthetic 2Z4L CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH PAROMOMYCIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH PAROMOMYCIN AND RRF BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.45 ESCHERICHIA COLI,ESCHERICHIA COLI 1JU7 NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN SOLUTION NMR 3-20-02 E.S.DEJONG,W.F.MARZLUFF,E.P.NIKONOWICZ HAIRPIN, TETRALOOP, 3' STACK, RNA synthetic 3F1E CRYSTAL STRUCTURE OF A TRANSLATION TERMINATION COMPLEX FORMED WITH RELEASE FACTOR RF2. THIS FILE CONTAINS THE 30S SUBUNIT, RF2, TWO TRNA, AND MRNA MOLECULES OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 12-23-08 A.KOROSTELEV,H.ASAHARA,L.LANCASTER,M.LAURBERG,A.HIRSCHI, H.F.NOLLER RF2, RIBOSOME, TERMINATION, TRNA 3.00 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 1MNB BIV TAT PEPTIDE (RESIDUES 68-81), NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 1-27-97 J.D.PUGLISI,L.CHEN,S.BLANCHARD,A.D.FRANKEL COMPLEX (REGULATORY PROTEIN/RNA), TRANSCRIPTION REGULATION, VIRAL PROTEIN/RNA COMPLEX synthetic 1X18 CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ELECTRON MICROSCOPY 5-17-05 M.R.SHARMA,C.BARAT,R.K.AGRAWAL CONTACT SITES OF ERA PROTEIN ON THE 30S RIBOSOMAL SUBUNIT, STRUCTURAL PROTEIN-RNA COMPLEX 13.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2WDM STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN METAL-BINDING, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSLATION, COILED COIL, TRNA-BINDING, RRNA-BINDING, TRNA, ZINC, MRNA, RIBOSOME, RNA-BINDING, ZINC-FINGER 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2NVT RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH GMPCPP X-RAY DIFFRACTION 12-12-06 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.36 synthetic 2BCY CRYSTAL STRUCTURE OF A MINIMAL, MUTANT ALL-RNA HAIRPIN RIBOZYME (U39C, G8MTU) X-RAY DIFFRACTION 2-14-06 J.D.SALTER,J.E.WEDEKIND RIBOZYME, G8, MTU, RNA 2.70 synthetic,synthetic,synthetic,synthetic 2MHI SOLUTION STRUCTURE OF THE CR4/5 DOMAIN OF MEDAKA TELOMERASE RNA SOLUTION NMR 12-25-13 N.KIM,Q.ZHANG,J.FEIGON CR4-CR5, TELOMERASE RNA, THREE-WAY JUNCTION, VERTEBRATE, MEDAKA, RNA synthetic 398D '-DNA-RNA-5' JUNCTION FORMED DURING INITIATION OF MINUS- STRAND SYNTHESIS OF HIV REPLICATION X-RAY DIFFRACTION 10-06-98 U.MUELLER,G.MEIER,A.MOCHI-ONORI,L.CELLAI,H.HEUMANN A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID 1.94 synthetic 3SUY CRYSTAL STRUCTURE OF THF RIBOSWITCH, UNBOUND STATUS X-RAY DIFFRACTION 9-14-11 L.HUANG,A.SERGANOV,D.J.PATEL THREE-WAY JUNCTION, PSEUDOKNOT, GENE REGULATOR, RNA 3.21 EUBACTERIUM SIRAEUM V10SC8A 1EXD CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE X-RAY DIFFRACTION 5-15-00 T.L.BULLOCK,L.D.SHERLIN,J.J.PERONA ENGINEERED TRNA, TRNA-PROTEIN COMPLEX, TRNA APTAMER, LIGASE/RNA COMPLEX 2.70 synthetic 4FTS CRYSTAL STRUCTURE OF THE N363T MUTANT OF THE FLOCK HOUSE VIRUS CAPSID X-RAY DIFFRACTION 8-01-12 J.A.SPEIR,Z.CHEN,V.S.REDDY,J.E.JOHNSON VIRUS, FLOCK HOUSE VIRUS, NODAVIRUS, RNA, BETA-BARREL, JELLYROLL, ASPARTYL PROTEASE, CAPSID PROTEIN, HYDROLASE, AUTOPROTEOLYSIS, VIRION, ICOSAHEDRAL VIRUS 3.20 SPODOPTERA FRUGIPERDA 6TNA CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT X-RAY DIFFRACTION 11-16-78 J.L.SUSSMAN,S.R.HOLBROOK,R.W.WARRANT,G.M.CHURCH,S.-H.KIM T-RNA, SINGLE STRAND, LOOPS 2.70 SACCHAROMYCES CEREVISIAE 3J3F STRUCTURE OF THE H. SAPIENS 60S RRNA ELECTRON MICROSCOPY 5-01-13 A.M.ANGER,J.-P.ARMACHE,O.BERNINGHAUSEN,M.HABECK,M.SUBKLEWE, D.N.WILSON,R.BECKMANN EUKARYA, EUKARYOTIC, RIBOSOMAL, 80S, RNA, PROTEIN SYNTHESIS, MASS SPECTROMETRY, RIBOSOME 5.00 HOMO SAPIENS,HOMO SAPIENS,HOMO SAPIENS 1XJR THE STRUCTURE OF A RIGOROUSLY CONSERVED RNA ELEMENT WITHIN THE SARS VIRUS GENOME X-RAY DIFFRACTION 2-01-05 M.P.ROBERTSON,H.IGEL,R.BAERTSCH,D.HAUSSLER,M.ARES JR., W.G.SCOTT RNA, GNRA, 530-LIKE LOOP, S2M, STEM-LOOP, PURINE BULGE, SARS 2.70 synthetic 3J53 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE- TRANSLOCATION STATE (PRE4, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 13.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3CC4 CO-CRYSTAL STRUCTURE OF ANISOMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL WILD TYPE, LARGE RIBOSOMAL SUBUNIT, HALOARCULA MARISMORTUI, CO-CRYSTAL, ANISOMYCIN, RIBOSOME 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3TWH SELENIUM DERIVATIZED RNA/DNA HYBRID IN COMPLEX WITH RNASE H CATALYTIC DOMAIN D132N MUTANT X-RAY DIFFRACTION 10-03-12 A.ROB,O.GERLITS,J.S.JIANG,J.H.GAN,Z.HUANG SELENIUM-DNA/RNA, RNASE H, ENDONUCLEASE, HYDROLASE, MAGNESIUM, MANGANESE, METAL-BINDING, SELENIUM-MODIFICATION, HYDROLASE-RNA-DNA COMPLEX 1.79 synthetic 2FK6 CRYSTAL STRUCTURE OF RNASE Z/TRNA(THR) COMPLEX X-RAY DIFFRACTION 3-21-06 I.LI DE LA SIERRA-GALLAY,N.MATHY,O.PELLEGRINI,C.CONDON PROTEIN-TRNA COMPLEX; ZINC-DEPENDENT METAL HYDROLASE; TRNA MATURASE, HYDROLASE/RNA COMPLEX 2.90 synthetic 1ZFV THE STRUCTURE OF AN ALL-RNA MINIMAL HAIRPIN RIBOZYME WITH MUTATION G8A AT THE CLEAVAGE SITE X-RAY DIFFRACTION 2-14-06 J.E.WEDEKIND HAIRPIN RIBOZYME, ALL-RNA, COBALT HEXAAMINE, MUTATION, JUNCTIONLESS, LOW SALT, S-TURN, E-LOOP, RIBOSE ZIPPER, CATALYTIC RNA 2.40 synthetic,synthetic,synthetic,synthetic 2DER COCRYSTAL STRUCTURE OF AN RNA SULFURATION ENZYME MNMA AND TRNA-GLU IN THE INITIAL TRNA BINDING STATE X-RAY DIFFRACTION 8-15-06 T.NUMATA,Y.IKEUCHI,S.FUKAI,T.SUZUKI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 3.10 synthetic 3I5X STRUCTURE OF MSS116P BOUND TO SSRNA AND AMP-PNP X-RAY DIFFRACTION 9-08-09 M.DEL CAMPO,A.M.LAMBOWITZ PROTEIN-RNA COMPLEX, RNA HELICASE, DEAD-BOX, ATP-BINDING, HELICASE, HYDROLASE, MITOCHONDRION, MRNA PROCESSING, MRNA SPLICING, NUCLEOTIDE-BINDING, RNA-BINDING, TRANSIT PEPTIDE, TRANSLATION REGULATION, HYDROLASE/RNA COMPLEX 1.90 synthetic 3FU2 COCRYSTAL STRUCTURE OF A CLASS-I PREQ1 RIBOSWITCH X-RAY DIFFRACTION 3-03-09 D.J.KLEIN,T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; APTAMER; RIBOSWITCH; QUEUOSINE; PREQ1 2.85 synthetic 2OGN THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080 X-RAY DIFFRACTION 5-01-07 C.DAVIDOVICH,A.BASHAN,T.AUERBACH-NEVO,A.YONATH SB-280080, PLEUROMUTILIN, PTC, PEPTIDYL TRANSFERASE CENTER, RIBOSOME, ANTIBIOTIC 3.56 DEINOCOCCUS RADIODURANS 1HNX STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN X-RAY DIFFRACTION 2-21-01 D.E.BRODERSEN,W.M.CLEMONS JR.,A.P.CARTER,R.MORGAN-WARREN, B.T.WIMBERLY,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, ANTIBIOTIC, PACTAMYCIN 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2HOL CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO THIAMINE PYROPHOSPHATE, BARIUM IONS X-RAY DIFFRACTION 9-19-06 T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; RIBOSWITCH 2.90 synthetic 2F4X NMR SOLUTION OF HIV-1 LAI KISSING COMPLEX SOLUTION NMR 2-28-06 F.KIEKEN,F.PAQUET,F.BRULE,J.PAOLETTI,G.LANCELOT SL1, RNA, KISSING COMPLEX, HAIRPIN synthetic 4HT9 CRYSTAL STRUCTURE OF E COLI HFQ BOUND TO TWO RNAS X-RAY DIFFRACTION 4-17-13 W.W.WANG,L.J.WANG HFQ, DSRA, RPOS, SM FOLD, RNA CHAPERONE, SINGLE STRANDED RNA, CYTOPLASMIC, RNA BINDING PROTEIN-RNA COMPLEX 1.80 HOMO SAPIENS,HOMO SAPIENS 1MWG STRUCTURE OF RIBONUCLEIC ACID, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 3-12-97 M.WU,J.SANTALUCIA,D.H.TURNER RIBONUCLEIC ACID, DUPLEX, G:A MISMATCH, RNA synthetic 3DW7 CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA, U2656-SECH3 MODIFIED X-RAY DIFFRACTION 3-24-09 V.OLIERIC,U.RIEDER,K.LANG,A.SERGANOV,C.SCHULZE-BRIESE,R.MICURA, P.DUMAS,E.ENNIFAR RNA, SARCIN RICIN LOOP 1.00 synthetic 1MFK STRUCTURE OF PROKARYOTIC SECIS MRNA HAIRPIN SOLUTION NMR 11-13-02 D.FOURMY,E.GUITTET,S.YOSHIZAWA RNA TETRALOOP, (A/U)GNN TETRALOOP FAMILY, SELB synthetic 2DR8 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDC AND CTP X-RAY DIFFRACTION 11-14-06 K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.50 synthetic 2B8R STRUCTURE OF HIV-1(LAI) GENOMIC RNA DIS X-RAY DIFFRACTION 10-25-05 E.ENNIFAR,P.WALTER,B.EHRESMANN,C.EHRESMANN,P.DUMAS HIV-1, RNA, HAIRPIN 2.60 synthetic 2G8F B. HALODURANS RNASE H CATALYTIC DOMAIN E188A MUTANT IN COMPLEX WITH MG2+ AND RNA/DNA HYBRID (NON-P NICK AT THE ACTIVE SITE) X-RAY DIFFRACTION 4-25-06 M.NOWOTNY,W.YANG RNASE H, RIBONUCLEASE H RNA/DNA HYBRID, HYDROLASE/RNA/DNA COMPLEX 1.65 synthetic 3G71 CO-CRYSTAL STRUCTURE OF BRUCEANTIN BOUND TO THE LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 4-28-09 G.GUREL,G.BLAHA,P.B.MOORE,T.A.STEITZ LARGE RIBOSOMAL SUBUNIT, HALOARCULA MARISMORTUI, BRUCEANTIN, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, ACETYLATION, RIBOSOME 2.85 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 353D CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE X-RAY DIFFRACTION 11-10-97 C.BETZEL,S.LORENZ,J.P.FURSTE,R.BALD,M.ZHANG,T.R.SCHNEIDER, K.S.WILSON,V.A.ERDMANN A-RNA, DOUBLE STRAND 2.40 synthetic,synthetic 4FB0 STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON C377G MUTANT IN A LIGAND-FREE STATE IN THE PRESENCE OF K+ AND MG2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, SPLICEOSOME, RNA 3.22 OCEANOBACILLUS IHEYENSIS 1N8X SOLUTION STRUCTURE OF HIV-1 STEM LOOP SL1 SOLUTION NMR 4-08-03 D.C.LAWRENCE,C.C.STOVER,J.NOZNITSKY,Z.WU,M.F.SUMMERS HIV, SL1, RNA STEM LOOP, BULGE, G-A MISMATCH synthetic 1NTB .9 A CRYSTAL STRUCTURE OF STREPTOMYCIN RNA-APTAMER COMPLEX X-RAY DIFFRACTION 5-13-03 V.TERESHKO,E.SKRIPKIN,D.J.PATEL STREPTOMYCIN RNA-APTAMER, MAGNESIUM FORM 2.90 synthetic,synthetic 2GYB STRUCTURE OF THE 30S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143 ELECTRON MICROSCOPY 9-26-06 K.MITRA,J.FRANK SECM; NASCENT CHAIN; SIGNAL TRANSDUCTION; RNA WORLD; POLYPEPTIDE EXIT TUNNEL; TRANSLOCATION; RIBOSOME; ELONGATION ARREST; PROTEIN-CONDUCTING CHANNEL 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3UZG CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.30 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 2RRA SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN HUMAN TRA2 BETA PROTEIN IN COMPLEX WITH RNA (GAAGAA) SOLUTION NMR 4-27-11 K.TSUDA,K.KUWASAKO,M.TAKAHASHI,T.SOMEYA,M.INOUE,T.KIGAWA,T.TERADA, M.SHIROUZU,S.SUGANO,Y.MUTO,S.YOKOYAMA RRM DOMAIN, RBD, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN-RNA COMPLEX, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI synthetic 1F6Z SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, C70U MUTANT, METAL BINDING SITE synthetic 1F8V THE STRUCTURE OF PARIACOTO VIRUS REVEALS A DODECAHEDRAL CAGE OF DUPLEX RNA X-RAY DIFFRACTION 12-06-00 L.TANG,K.N.JOHNSON,L.A.BALL,T.LIN,M.YEAGER,J.E.JOHNSON NODAVIRUS, COAT PROTEIN, NUCLEOPROTEIN, PROTEIN-RNA INTERACTIONS, RNA DUPLEX, RNA CAGE, GAMMA POLYPEPTIDE, BETA- SANDWICH, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 3.00 PARIACATO VIRUS 1F5U SOLUTION STRUCTURE OF THE KISSING DIMER OF H3 GACG STEM- LOOP IN THE 5'-END DIMERIZATION SIGNAL OF MOLONEY MURINE LEUKEMIA VIRUS GENOMIC RNA SOLUTION NMR 8-21-00 C.-H.KIM,I.TINOCO JR. NMR, RETROVIRUS, MOLONEY MURINE LEUKEMIA VIRUS, DIMERIZATION, TETRALOOP, STEM-LOOP, KISSING DIMER, RNA synthetic 3OL6 POLIOVIRUS POLYMERASE ELONGATION COMPLEX X-RAY DIFFRACTION 12-22-10 P.GONG,O.B.PEERSEN RNA-DEPENDENT RNA POLYMERASE, ELONGATION COMPLEX, VIRUS, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.50 synthetic,synthetic,synthetic 2E5L A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE- DALGARNO INTERACTION X-RAY DIFFRACTION 5-15-07 T.KAMINISHI,D.N.WILSON,C.TAKEMOTO,J.M.HARMS,M.KAWAZOE, F.SCHLUENZEN,K.HANAWA-SUETSUGU,M.SHIROUZU,P.FUCINI, S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) S RIBOSOMAL SUBUNIT, MRNA CAPTURE, SHINE-DALGARNO INTERACTION, 5' UNTRANSLATED REGION, TRANSLATION INITIATION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RIBOSOME 3.30 THERMUS THERMOPHILUS,synthetic 1IDV NMR STRUCTURE OF HCV IRES RNA DOMAIN IIIC SOLUTION NMR 10-05-01 K.KALUARACHCHI,R.RIJNBRAND,S.M.LEMON,D.G.GORENSTEIN HEPATITIS C RNA, IRES, STEM-LOOP, DOMAIN IIIC synthetic 3UYD CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 4TNA FURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHE X-RAY DIFFRACTION 4-12-78 B.E.HINGERTY,R.S.BROWN,A.JACK T-RNA, SINGLE STRAND, LOOPS 2.50 SACCHAROMYCES CEREVISIAE 3MUV CRYSTAL STRUCTURE OF THE G20A/C92U MUTANT C-DI-GMP RIBOSWITH BOUND TO C-DI-AMP X-RAY DIFFRACTION 8-25-10 S.A.STROBEL,K.D.SMITH RNA, RIBOSWITCH, C-DI-AMP, C-DI-GMP, RNA BINDING PROTEIN-RNA COMPLEX 3.20 synthetic 1RRR RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES SOLUTION NMR 4-22-98 J.I.GYI,A.N.LANE,G.L.CONN,T.BROWN RNA DUPLEX, PURINE/PYRIMIDINE-RICH STRANDS, A-FORM synthetic,synthetic 2HNS STRUCTURE OF THE AAGU TETRALOOP SOLUTION NMR 10-31-06 C.GAUDIN,F.FOURMY,S.YOSHIZAWA TETRALOOP, HAIRPIN, RNA synthetic 2B9M S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX. THIS FILE CONTAINS THE 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURE CONTAINS ONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTOR RF2 AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 1-10-06 S.PETRY,D.E.BRODERSEN,F.V.MURPHY IV,C.M.DUNHAM,M.SELMER, M.J.TARRY,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRANSLATION, RELEASE FACTOR 6.76 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3S4G LOW RESOLUTION STRUCTURE OF STNV COMPLEXED WITH RNA X-RAY DIFFRACTION 8-03-11 S.W.LANE,C.A.DENNIS,C.L.LANE,C.H.TRINH,P.J.RIZKALLAH,P.G.STOCKLEY, S.E.V.PHILLIPS PROTEIN-RNA COMPLEX, LOW RESOLUTION STRUCTURE, JELLY-ROLL -SANDWICH, VIRUS CAPSID PROTEIN, VIRUS 6.00 synthetic,synthetic 472D STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS X-RAY DIFFRACTION 11-27-00 J.DENG,M.SUNDARALINGAM GG/UU MISPAIRS, RIBONUCLEIC ACID, RNA 1.90 synthetic,synthetic 1MV6 THE TANDEM, SHEARED PP PAIRS IN 5'(RGGCPPGCCU)2 SOLUTION NMR 12-18-02 B.M.ZNOSKO,M.E.BURKARD,T.R.KRUGH,D.H.TURNER RIBONUCLEIC ACID, DUPLEX, TANDEM MISMATCH, PURINE, RNA synthetic 2XQE THE STRUCTURE OF EF-TU AND AMINOACYL-TRNA BOUND TO THE 70S RIBOSOME WITH A GTP ANALOG X-RAY DIFFRACTION 11-17-10 R.M.VOORHEES,T.M.SCHMEING,V.RAMAKRISHNAN RIBOSOME, EF-TU, TRNA, GDPCP, GTPASE 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2IL9 CRYSTAL STRUCTURE OF PLAUTIA STALI INTESTINE VIRUS INTERGENIC REGION INTERNAL RIBOSOME ENTRY SITE RIBOSOMAL BINDING DOMAIN RNA AT 3.1 ANGSTROMS X-RAY DIFFRACTION 2-13-07 J.S.PFINGSTEN,D.A.COSTANTINO,J.S.KIEFT RNA; IRES; RIBOSOMAL BINDING DOMAIN; PSIV; UNDER WOUND HELIX; DOUBLE-NESTED PSEUDOKNOT 3.10 synthetic 3T3N MOLECULAR BASIS FOR THE RECOGNITION AND CLEAVAGE OF RNA (UUCCGU) BY THE BIFUNCTIONAL 5'-3' EXO/ENDORIBONUCLEASE RNASE J X-RAY DIFFRACTION 10-19-11 A.DORLEANS,I.LI DE LA SIERRA-GALLAY,J.PITON,L.ZIG,L.GILET,H.PUTZER, C.CONDON PROTEIN-RNA COMPLEX, METALLO-BETA-LACTAMASE, RNASE J, ENDORIBONUCLEASE, 5'-3' EXORIBONUCLEASE, METAL DEPENDENT HYDROLASE, RNA, HYDROLASE, HYDROLASE-RNA COMPLEX 3.09 synthetic 2O83 THE STRUCTURE OF TANDEM GA RNA PAIRS WHEN FLANKING PAIRS ARE ISOG-ISOC PAIRS SOLUTION NMR 7-10-07 S.D.KENNEDY,D.H.TURNER RNA, THERMODYNAMICS, SECONDARY STRUCTURE PREDICTION, IMINO GA PAIR, ISOGUANOSINE, ISOCYTIDINE synthetic 3J5X STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE PRE- TRANSLOCATION STATE (PRE-TRANSLOCATION 70S*TRNA*EF-G STRUCTURE, 30S SUBUNIT WITH HYBRID A/P* AND P/E TRNAS, EF-G, AND VIOMYCIN) ELECTRON MICROSCOPY 12-18-13 A.F.BRILOT,A.A.KOROSTELEV,D.N.ERMOLENKO,N.GRIGORIEFF TRANSLATION, EF-G, SINGLE PARTICLE ANALYSIS, PRE-TRANSLOCATION TRANSLATION COMPLEX, VIOMYCIN 7.60 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2AKE STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN COMPLEX WITH TRNA(TRP) X-RAY DIFFRACTION 7-11-06 N.SHEN,L.GUO,B.YANG,Y.JIN,J.DING ROSSMANN FOLD, LIGASE/RNA COMPLEX 3.10 BOS TAURUS 2ERR NMR STRUCTURE OF THE RNA BINDING DOMAIN OF HUMAN FOX-1 IN COMPLEX WITH UGCAUGU SOLUTION NMR 1-10-06 F.H.ALLAIN,S.D.AUWETER PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN HOMO SAPIENS 3KFU CRYSTAL STRUCTURE OF THE TRANSAMIDOSOME X-RAY DIFFRACTION 8-25-10 M.BLAISE,M.BAILLY,M.FRECHIN,S.THIRUP,H.D.BECKER,D.KERN ASPRS, GATCAB, ATP-BINDING, AMINOACYL-TRNA SYNTHETASE, LIGASE, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE-RNA COMPLEX 3.00 THERMUS THERMOPHILUS 2LUP RDC REFINED SOLUTION STRUCTURE OF DOUBLE-STRANDED RNA BINDING DOMAIN OF S. CEREVISIAE RNASE III (RNT1P) IN COMPLEX WITH THE TERMINAL RNA HAIRPIN OF SNR47 PRECURSOR SOLUTION NMR 7-04-12 Z.WANG,J.FEIGON DSRBD, RNT1P, SNR47, DOUBLE STRAND RNA BINDING, RNA BINDING PROTEIN- RNA COMPLEX synthetic 3G4M CRYSTAL STRUCTURE OF GUANINE RIBOSWITCH BOUND TO 2- AMINOPURINE X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,R.T.BATEY RIBOSWITCH, MRNA, 2-AMINOPURINE, GUANINE, THREE-WAY JUNCTION, RNA-LIGAND COMPLEX, DOUBLE HELIX, BASE-TRIPLE. 2.40 synthetic 1UVL THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 WITH 5NT RNA CONFORMATION B X-RAY DIFFRACTION 2-26-04 P.S.SALGADO,E.V.MAKEYEV,S.BUTCHER,D.BAMFORD,D.I.STUART, J.M.GRIMES POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, OLIGONUCLEOTIDE POLYMERASE, TRANSCRIPTION, STRUCTURAL PROTEIN 2.0 synthetic 1ZDI RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEX X-RAY DIFFRACTION 4-21-97 K.VALEGARD,S.VAN DEN WORM,L.LILJAS COMPLEX (COAT PROTEIN/RNA), COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.70 ENTEROBACTERIO PHAGE MS2 2ZH6 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDCU AND ATP X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.50 ARCHAEOGLOBUS FULGIDUS 2XZO UPF1 HELICASE - RNA COMPLEX X-RAY DIFFRACTION 3-30-11 S.CHAKRABARTI,U.JAYACHANDRAN,F.BONNEAU,F.FIORINI,C.BASQUIN,S.DOMCKE, H.LE HIR,E.CONTI HYDROLASE-RNA COMPLEX, NMD, RNA DEGRADATION, ALLOSTERIC REGULATION 2.40 SYNTHETIC CONSTRUCT 2F4T ASITE RNA + DESIGNER ANTIBIOTIC X-RAY DIFFRACTION 5-02-06 J.B.MURRAY,S.O.MEROUEH,R.J.RUSSELL,G.LENTZEN,J.HADDAD, S.MOBASHERY ASITE RNA, DESIGNER ANTIBIOTIC 3.00 synthetic,synthetic 4B3Q STRUCTURES OF HIV-1 RT AND RNA-DNA COMPLEX REVEAL A UNIQUE RT CONFORMATION AND SUBSTRATE INTERFACE X-RAY DIFFRACTION 1-16-13 M.LAPKOUSKI,L.TIAN,J.T.MILLER,S.F.J.LE GRICE,W.YANG HYDROLASE-DNA-RNA COMPLEX, RNASE H, HYBRID 5.00 synthetic 3RER CRYSTAL STRUCTURE OF E. COLI HFQ IN COMPLEX WITH AU6A RNA AND ADP X-RAY DIFFRACTION 10-19-11 W.W.WANG,J.H.WU,Y.Y.SHI ADP, HFQ, DSRA, SM FOLD, RNA CHAPERONE, ATP AND RNA BINDING, CHAPERONE-RNA COMPLEX 1.70 synthetic 4KJB CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 124D STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA SOLUTION NMR 10-31-93 O.Y.FEDOROFF,M.SALAZAR,B.R.REID DNA/RNA COMPLEX, DOUBLE HELIX, DNA-RNA HYBRID synthetic 1VOZ CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI 2XFZ STRUCTURE OF CYTOTOXIC DOMAIN OF COLICIN E3 BOUND TO THE 70S RIBOSOME (PART 1 OF 4) X-RAY DIFFRACTION 9-22-10 C.L.NG,K.LANG,N.A.G.MEENAN,A.SHARMA,A.C.KELLEY,C.KLEANTHOUS, V.RAMAKRISHNAN RIBOSOME 3.20 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 2KD8 SOLUTION STRUCTURE OF THE STEM-LOOP IIID OF GBV-B IRES SOLUTION NMR 1-19-10 V.THIVIYANATHAN,R.KULASEGRAN SHYLINI,D.G.GORENSTEIN, K.KALUARACHCHI IRES, GB VIRUS B, FLAVIVIRUS, RNA synthetic 4FSJ CRYSTAL STRUCTURE OF THE VIRUS LIKE PARTICLE OF FLOCK HOUSE VIRUS X-RAY DIFFRACTION 8-01-12 J.A.SPEIR,Z.CHEN,V.S.REDDY,J.E.JOHNSON VIRUS, FLOCK HOUSE VIRUS, NODAVIRUS, RNA, BETA-BARREL, JELLYROLL, ASPARTYL PROTEASE, CAPSID PROTEIN, HYDROLASE, AUTOPROTEOLYSIS, VIRION, ICOSAHEDRAL VIRUS 3.50 SPODOPTERA FRUGIPERDA 3HUX STRUCTURE OF EF-P BOUND TO THE 70S RIBOSOME; THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I. X-RAY DIFFRACTION 9-29-09 R.E.STANLEY,G.BLAHA TRANSLATION, ELONGATION FACTOR, INITIATION, L1-STALK, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA- BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA- BINDING, METHYLATION, METAL-BINDING, ZINC, RIBOSOME 3.10 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3UMY CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217A TTHL1 IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 10-31-12 A.G.GABDULKHAKOV,N.A.NEVSKAYA,S.V.NIKONOV ROSSMANN FOLD, RIBOSOMAL PROTEIN, RRNA, RRNA BINDING, RIBOSOME, RRNA BINDING PROTEIN-RNA COMPLEX 1.90 THERMUS THERMOPHILUS 2OZB STRUCTURE OF A HUMAN PRP31-15.5K-U4 SNRNA COMPLEX X-RAY DIFFRACTION 3-20-07 S.LIU,R.LUEHRMANN,M.C.WAHL RNA-PROTEIN COMPLEX, RIBONUCLEOPROTEIN PARTICLE (RNP), PRE- MRNA SPLICING, U4/U6 DI-SNRNA, U4/U6 DI-SNRNP, HIERARCHICAL ASSEMBLY, NOP DOMAIN, RNP-BINDING DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX 2.60 synthetic 4B8F CRYSTAL STRUCTURE OF 70S RIBOSOME WITH BOTH COGNATE TRNAS IN THE E AND P SITES REPRESENTING AN AUTHENTIC ELONGATION COMPLEX X-RAY DIFFRACTION 4-03-13 Y.G.GAO,S.FENG,Y.CHEN RIBOSOME, PROTEIN TRANSLATION 3.70 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 2Y0W THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3CR1 CRYSTAL STRUCTURE OF A MINIMAL, MUTANT, ALL-RNA HAIRPIN RIBOZYME (A38C, A-1OMA) GROWN FROM MGCL2 X-RAY DIFFRACTION 8-26-08 J.D.SALTER,J.E.WEDEKIND RIBOZYME, A38, RNA 2.25 synthetic,synthetic 2KUU SOLUTION STRUCTURE OF K10 TLS RNA (GC MUTANT IN UPPER HELIX) SOLUTION NMR 5-19-10 S.L.BULLOCK,I.RINGEL,D.ISH-HOROWICZ,P.J.LUKAVSKY RNA TRANSPORT, RNA HAIRPIN, RNA DROSOPHILA MELANOGASTER 4FAX STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN A LIGAND-FREE STATE IN THE PRESENCE OF NA+ AND MG2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, SPLICEOSOME, RNA 3.10 OCEANOBACILLUS IHEYENSIS 2XUX TRNA TRANLOCATION ON THE 70S RIBOSOME: THE POST- TRANSLOCATIONAL TRANSLOCATION INTERMEDIATE TI(POST) ELECTRON MICROSCOPY 12-08-10 A.H.RATJE,J.LOERKE,A.MIKOLAJKA,M.BRUENNER,P.W.HILDEBRAND, A.L.STAROSTA,A.DOENHOEFER,S.R.CONNELL,P.FUCINI,T.MIELKE, P.C.WHITFORD,J.ONUCHIC,Y.YU,K.Y.SANBONMATSU,R.K.HARTMANN, P.A.PENCZEK,D.N.WILSON,C.M.T.SPAHN TRANSLATION, RIBOSOME, ELONGATION CYCLE, TRNA TRANSLOCATION 7.60 synthetic,synthetic 1EVV CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION X-RAY DIFFRACTION 5-01-00 L.JOVINE,S.DJORDJEVIC,D.RHODES TRANSFER RNA, PHENYLALANINE, PHE-TRNA, YEAST, AMINO-ACID TRANSPORT 2.00 SACCHAROMYCES 3UCU THE C-DI-GMP-I RIBOSWITCH BOUND TO PGPG X-RAY DIFFRACTION 1-04-12 K.D.SMITH,S.A.STROBEL RIBOSWITCH, SIGNALING PROTEIN-RNA COMPLEX 2.80 synthetic,synthetic 2R7Z CISPLATIN LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX X-RAY DIFFRACTION 11-20-07 G.E.DAMSMA,A.ALT,F.BRUECKNER,T.CARELL,P.CRAMER TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING, PHOSPHORYLATION, CISPLATIN LESION, MISINCORPORATION, RNA POLYMERASE II, TRANSCRIPTION- COUPLED REPAIR, TCR, ARREST, STALLING, DNA LESION, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, DAMAGE RECOGNITION, ELONGATION COMPLEX, TRANSFERASE, TRANSCRIPTION, TRANSFERASE-DNA-RNA COMPLEX, TRANSCRIPTION-DNA-RNA HYBRID COMPLEX 3.80 synthetic 1TOB SACCHARIDE-RNA RECOGNITION IN AN AMINOGLYCOSIDE ANTIBIOTIC- RNA APTAMER COMPLEX, NMR, 7 STRUCTURES SOLUTION NMR 6-16-97 L.JIANG,A.K.SURI,R.FIALA,D.J.PATEL RIBONUCLEIC ACID, RNA synthetic 28SP NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA SOLUTION NMR 4-12-99 U.SCHMITZ,T.L.JAMES,P.LUKAVSKY,P.WALTER NMR OF RNA, SRP, 4.5S RNA, COMPLETE RELAXATION MATRIX ANALYSIS ESCHERICHIA COLI 3P59 FIRST CRYSTAL STRUCTURE OF A RNA NANOSQUARE X-RAY DIFFRACTION 4-06-11 S.DIBROV,T.HERMANN,J.MCLEAN,J.PARSONS RNA SQUARE, RNA 2.18 synthetic,synthetic 4JRD CRYSTAL STRUCTURE OF THE PARALLEL DOUBLE-STRANDED HELIX OF POLY(A) RNA X-RAY DIFFRACTION 6-05-13 N.SAFAEE,A.M.NORONHA,G.KOZLOV,D.RODIONOV,C.J.WILDS,G.M.SHELDRICK, K.GEHRING PARALLEL DOUBLE HELIX, POLY(A), MRNA, PABP, POLY(A) MOTIF, RNA 1.00 synthetic 3QRP STRUCTURE OF THERMUS THERMOPHILUS CSE3 BOUND TO AN RNA REPRESENTING A PRODUCT MIMIC COMPLEX X-RAY DIFFRACTION 5-25-11 M.J.SCHELLENBERG,E.M.GESNER,E.L.GARSIDE,A.M.MACMILLAN RAMP DOMAIN, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN-RNA COMPLEX 2.35 synthetic,synthetic 3E5F CRYSTAL STRUCTURES OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SE-SAM X-RAY DIFFRACTION 10-07-08 C.LU SMK SAM RIBOSWITCH SHINE-DELGARNO TRANSLATION REGULATION, RNA 2.70 synthetic 1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN X-RAY DIFFRACTION 3-18-03 F.SCHLUENZEN,J.HARMS,F.FRANCESCHI,H.A.S.HANSEN,H.BARTELS, R.ZARIVACH,A.YONATH AZITHROMYCIN, MACROLIDE, KETOLIDE, RIBOSOME, 50S, RIBOSOMAL 3.30 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3I2S CRYSTAL STRUCTURE OF THE HAIRPIN RIBOZYME WITH A 2'OME SUBSTRATE AND N1-DEAZAADENOSINE AT POSITION A10 X-RAY DIFFRACTION 11-03-09 J.E.WEDEKIND,R.C.SPITALE,J.KRUCINSKA HAIRPIN RIBOZYME, N1-DEAZAADENOSINE, RNA 2.75 synthetic,synthetic 2V3C CRYSTAL STRUCTURE OF THE SRP54-SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII X-RAY DIFFRACTION 9-04-07 T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON NUCLEOTIDE-BINDING, SIGNAL RECOGNITION PARTICLE, RNA, GTP-BINDING, RNA-BINDING, RIBONUCLEOPROTEIN, SIGNALING PROTEIN 2.50 METHANOCALDOCOCCUS JANNASCHII 3GX7 CRYSTAL STRUCTURE OF THE T. TENGCONGENSIS SAM-I RIBOSWITCH VARIANT U34C/A94G MUTANT A6C/U7G/A87C/U88G BOUND WITH SAM X-RAY DIFFRACTION 1-12-10 R.K.MONTANGE,R.T.BATEY KINK-TURN, FOUR-WAY JUNCTION, PSEUDOKNOT, RIBOSWITCH, RNA 2.95 synthetic 4DWA CRYSTAL STRUCTURE OF AN ACTIVE-SITE MUTANT OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH A CPUPC TRINUCLEOTIDE X-RAY DIFFRACTION 5-23-12 T.KREY,F.BONTEMS,C.VONRHEIN,M.-C.VANEY,G.BRICOGNE,T.RUEMENAPF,F.A.REY VIRUS GLYCOPROTEIN, T2 RIBONUCLEASE, VIRAL PROTEIN-RNA COMPLEX 3.01 synthetic 2WYY CRYOEM MODEL OF THE VESICULAR STOMATITIS VIRUS ELECTRON MICROSCOPY 2-16-10 P.GE,J.TSAO,T.J.GREEN,M.LUO,Z.H.ZHOU VIRUS, RNA, NSRV, HELIX, VIRION, VIRAL NUCLEOPROTEIN 10.00 synthetic 3PYO CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 FROM THE PSIV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2ET3 COMPLEX BETWEEN GENTAMICIN C1A AND THE 16S-RRNA A-SITE X-RAY DIFFRACTION 12-13-05 E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.80 synthetic 3R2C CRYSTAL STRUCTURE OF ANTITERMINATION FACTORS NUSB AND NUSE IN COMPLEX WITH BOXA RNA X-RAY DIFFRACTION 6-22-11 J.R.STAGNO,X.JI CROSS SPECIES NUSB-NUSE-RNA INTERACTION, TRANSCRIPTION ELONGATION, GENE REGULATION, PROTEIN-RNA INTERACTION, TRANSCRIPTION-RNA COMPLEX 1.90 AQUIFEX AEOLICUS 1P86 REAL SPACE REFINED COORDINATES OF THE 50S SUBUNIT FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME ELECTRON MICROSCOPY 6-17-03 H.GAO,J.SENGUPTA,M.VALLE,A KOROSTELEV,N.ESWAR,S.M.STAGG, P.VAN ROEY,R.K.AGRAWAL,S.T.HARVEY,A.SALI,M.S.CHAPMAN,J.FRANK EF-G.GTP-BOUND STATE, RATCHET-LIKE MOVEMENT, REAL-SPACE REFINEMENT, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1YZ9 CRYSTAL STRUCTURE OF RNASE III MUTANT E110Q FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.1- ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-22-05 J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI RIBONUCLEASE III, DOUBLE-STRANDED RNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 2.10 synthetic 4DS6 CRYSTAL STRUCTURE OF A GROUP II INTRON IN THE PRE-CATALYTIC STATE X-RAY DIFFRACTION 4-18-12 R.T.CHAN,A.R.ROBART,K.R.RAJASHANKAR,A.M.PYLE,N.TOOR RNA, RIBONUCLEIC ACID, INTRON, GROUP II 3.64 OCEANOBACILLUS IHEYENSIS 2LP9 PSEUDO-TRILOOP FROM THE SUB-GENOMIC PROMOTER OF BROME MOSAIC VIRUS SOLUTION NMR 5-16-12 J.SKOV PSEUDO-TRILOOP, RNA REPLICATION, RNA synthetic 2ANN CRYSTAL STRUCTURE (I) OF NOVA-1 KH1/KH2 DOMAIN TANDEM WITH 25 NT RNA HAIRPIN X-RAY DIFFRACTION 10-24-06 L.MALININA,M.TEPLOVA,K.MUSUNURU,A.TEPLOV,J.C.DARNELL, S.K.BURLEY,R.B.DARNELL,D.J.PATEL PROTEIN-RNA COMPLEX, RNA-BINDING PROTEIN/RNA COMPLEX 2.30 synthetic 2H1M SYNTHESIS, OXIDATION BEHAVIOR, CRYSTALLIZATION AND STRUCTURE OF 2'-METHYLSELENO GUANOSINE CONTAINING RNAS X-RAY DIFFRACTION 7-18-06 A.A.SERGANOV A-RNA STRUCTURE, MISMATCH A RNA, RIBONUCLEIC ACID, SE 2'- METHYLSE 2.90 synthetic 1QC8 NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA SOLUTION NMR 8-31-99 L.VARANI,M.G.SPILLANTINI,A.KLUG,M.GOEDERT,G.VARANI ALTERNATIVE MRNA SPLICING, FRONTOTEMPORAL DEMENTIA FTDP-17, INTRONIC MUTATIONS, STEM-LOOP RNA STRUCTURE, TAU GENE EXON 10 synthetic 4A3C RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT DNA-RNA HYBRID X-RAY DIFFRACTION 11-16-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.50 SACCHAROMYCES CEREVISIAE 2CD1 REFINEMENT OF P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA SOLUTION NMR 5-01-07 M.SCHMITZ METAL BINDING SITE, P4 STEM, RIBONUCLEASE P, RIBONUCLEIC ACID, RIBOZYME, TRANSFER RNA PROCESSING, NUCLEIC ACID ESCHERICHIA COLI 4GPX CRYSTAL STRUCTURE OF THE PROTOZOAL CYTOPLASMIC RIBOSOMAL DECODING SITE IN COMPLEX WITH 6'-HYDROXYSISOMICIN (P212121 FORM) X-RAY DIFFRACTION 4-03-13 J.KONDO,M.KOGANEI,J.P.MAIANTI,V.L.LY,S.HANESSIAN RIBOSOME, AMINOGLYCOSIDE, RNA-ANTIBIOTIC COMPLEX, ANTIPROTOZOAL ACTIVITY, ANTIBACTERIAL ACTIVITY 2.60 synthetic 3GLP .23 A RESOLUTION X-RAY STRUCTURE OF (GCUGCUGC)2 X-RAY DIFFRACTION 5-26-09 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI STRETCHED U-U WOBBLE, RNA, MYOTONIC DYSTROPHY, CUG REPEATS 1.23 synthetic 2WH2 INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME X-RAY DIFFRACTION 5-19-09 A.WEIXLBAUMER,H.JIN,C.NEUBAUER,R.M.VOORHEES,S.PETRY, A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRNA, MRNA, TRANSLATION, TERMINATION, RF2 3.45 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3NJ6 .95 A RESOLUTION X-RAY STRUCTURE OF (GGCAGCAGCC)2 X-RAY DIFFRACTION 8-25-10 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI CAG REPEATS, POLYQ DISEASES, RNA 0.95 synthetic 1WTS HELIX 45 (16S RRNA) FROM B. STEAROTHERMOPHILUS, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 1-27-99 J.P.RIFE,P.B.MOORE RIBONUCLEIC ACID, RIBOSOME, RNA, 16S, MODIFIED NUCLEOTIDES, TETRALOOP synthetic 3OIN CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE NEP1/EMG1 BOUND TO S- ADENOSYLHOMOCYSTEINE AND 1 MOLECULE OF COGNATE RNA X-RAY DIFFRACTION 12-01-10 S.R.THOMAS,N.LARONDE-LEBLANC EMG1, SCNEP1, SPOUT, RIBOSOME BIOGENESIS, METHYLTRANSFERASE, RRNA PROCESSING, RIBOSOMAL PROTEIN 1.90 synthetic 3KC4 RIBOSOME-SECY COMPLEX. THIS ENTRY 3KC4 CONTAINS 30S RIBOSOMAL SUBNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3KCR ELECTRON MICROSCOPY 3-02-10 J.C.GUMBART,L.G.TRABUCO,E.SCHREINER,E.VILLA,K.SCHULTEN RIBOSOME-SECY COMPLEX, PROTEIN TRANSLOCATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE, RIBOSOME 9.60 ESCHERICHIA COLI 4KDH S RIBOSOME TRANSLOCATION INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT A. THE 30S SUBUNIT A CAN BE FOUND IN 4KDG. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDJ (30S) AND 4KDK (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA 4.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1RY1 STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME ELECTRON MICROSCOPY 4-20-04 M.HALIC,T.BECKER,M.R.POOL,C.M.SPAHN,R.A.GRASSUCCI,J.FRANK, R.BECKMANN SIGNAL RECOGNITION PARTICLE, RNA BINDING, TRANSLATION 12.00 synthetic,synthetic,synthetic,synthetic,synthetic,synthetic,synthetic,synthetic 3J55 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE- TRANSLOCATION STATE (PRE5A, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2QK9 HUMAN RNASE H CATALYTIC DOMAIN MUTANT D210N IN COMPLEX WITH 18-MER RNA/DNA HYBRID X-RAY DIFFRACTION 11-13-07 M.NOWOTNY,S.A.GAIDAMAKOV,R.GHIRLANDO,S.M.CERRITELLI, R.J.CROUCH,W.YANG RNASE H; RNA/DNA HYBRID, HYDROLASE/DNA/RNA COMPLEX 2.55 HOMO SAPIENS 2G1G SOLUTION STRUCTURE OF THE ANTICODON LOOP OF S. POMBE TRNAI INCLUDING THE NATURALLY OCCURRING N6-THREONYL ADENINE SOLUTION NMR 6-20-06 E.LESCRINIER T-RNAI ANTICODONLOOP T6A synthetic 2KYD RDC AND RCSA REFINEMENT OF AN A-FORM RNA: IMPROVEMENTS IN MAJOR GROOVE WIDTH SOLUTION NMR 7-07-10 B.S.TOLBERT,M.F.SUMMERS,Y.MIYAZAKI,S.BARTON,B.KINDE,P.STARK,R.SINGH, A.BAX,D.CASE A-FORM RNA, SLB DUPLEX, MOLONEY MURINE LEUKEMIA VIRUS DIMERIZATION SIGNAL, RDC AND RCSA REFINEMENT, RNA synthetic 1WKS SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2 SOLUTION NMR 6-22-04 S.BABA,M.KAJIKAWA,N.OKADA,G.KAWAI NMR, RNA, PENTALOOP, LINE, RETROTRANSPOSITION synthetic 2X9U STRUCTURE OF THE 70S RIBOSOME BOUND TO RELEASE FACTOR 2 AND A SUBSTRATE ANALOG PROVIDES INSIGHTS INTO CATALYSIS OF PEPTIDE RELEASE X-RAY DIFFRACTION 5-12-10 H.JIN,A.C.KELLEY,D.LOAKES,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRNA-BINDING, RRNA-BINDING, METAL-BINDING, RIBOSOME, ZINC-FINGER, TRANSLATION 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2Y8Y STRUCTURE B OF CRISPR ENDORIBONUCLEASE CSE3 BOUND TO 19 NT RNA X-RAY DIFFRACTION 5-18-11 D.G.SASHITAL,M.JINEK,J.A.DOUDNA HYDROLASE-RNA COMPLEX, FERREDOXIN-LIKE 1.44 synthetic 1L9A CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA X-RAY DIFFRACTION 6-28-02 C.OUBRIDGE,A.KUGLSTATTER,L.JOVINE,K.NAGAI PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, SRP, SIGNAL RECOGNITION PARTICLE, TETRALOOP, SIGNALING PROTEIN/RNA COMPLEX 2.90 synthetic 1XSH SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM OLIGORIBONUCLEOTIDE, U69C/C70U MUTATION SOLUTION NMR 12-28-04 M.SCHMITZ RIBONUCLEASE P RNA, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, U69C/C70U MUTANT, METAL BINDING SITE synthetic 4E8M STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN A LIGAND-FREE STATE IN THE PRESENCE OF K+ AND MG2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, METALLOENZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA 3.50 OCEANOBACILLUS IHEYENSIS 3B31 CRYSTAL STRUCTURE OF DOMAIN III OF THE CRICKET PARALYSIS VIRUS IRES RNA X-RAY DIFFRACTION 12-25-07 J.S.KIEFT,D.A.COSTANTINO,J.S.PFINGSTEN,R.P.RAMBO IRES, RNA STRUCTURE, TRANSLATION INITIATION, TRNA ANTICODON, HYBRID STATE, TRNA MIMICRY 2.40 synthetic,synthetic 2NZ4 STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS CATALYTIC COFACTOR X-RAY DIFFRACTION 1-16-07 J.C.COCHRANE STRUCTURAL PROTEIN/RNA 2.50 synthetic,synthetic 4KBU S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-II CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS 50S RIBOSOMAL SUBUNIT A. THE FULL ASYMMETRIC UNIT ALSO CONTAINS PDB ENTRIES 4KBT (30S SUBUNIT A), 4KBV (30S SUBUNIT B), AND 4KBW (50S SUBUNIT B). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.86 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1OB5 T. AQUATICUS ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC ENACYLOXIN IIA, A GTP ANALOG, AND PHE-TRNA X-RAY DIFFRACTION 10-13-05 C.DAHLBERG,R.C.NIELSEN,A.PARMEGGIANI,J.NYBORG,P.NISSEN HYDROLASE, GTPASE, TRANSLATION ELONGATION FACTOR, TRANSFER RNA, GTP-BINDING, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS 3.1 SACCHAROMYCES CEREVISIAE 2CD3 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA - C70U MUTANT SOLUTION NMR 5-01-07 M.SCHMITZ NUCLEIC ACID, C70U MUTANT, METAL BINDING SITE, P4 STEM, RIBONUCLEASE P, RIBONUCLEIC ACID, RIBOZYME, TRANSFER RNA PROCESSING ESCHERICHIA COLI 2LDT THE 912-888 ALTERNATE CONFORMATION FOR HELIX 27 OF E.COLI 16S RRNA SOLUTION NMR 9-07-11 M.N.SPANO,N.G.WALTER RNA, RRNA, SWITCH HELIX synthetic 2H49 THE NMR STRUCTURE OF AN INTERNAL LOOP FROM 23S RIBOSOMAL RNA OF DEINOCOCCUS RADIODURANS DIFFERS FROM THE STRUCTURE IN THE CRYSTAL OF THE RIBOSOMAL SUBUNIT SOLUTION NMR 11-21-06 N.SHANKAR RNA INTERNAL LOOP 5'CUAAG3'/3'GAAGC5', COMPARISON BETWEEN CRYSTAL STRUCTURE AND NMR STRUCTURE, THERMODYNAMICS OF INTERNAL LOOP synthetic,synthetic 3ZN7 THE CRYSTAL STRUCTURE OF AGMATIDINE TRNA-ILE2 BOUND TO THE 70S RIBOSOME IN THE A AND P SITE. X-RAY DIFFRACTION 4-03-13 R.M.VOORHEES,D.MANDAL,C.NEUBAUER,C.KOEHRER,U.L.RAJBHANDARY, V.RAMAKRISHNAN RIBOSOME, AGMATIDINE, TRNA, TRNAILE2 3.10 THERMUS THERMOPHILUS,HALOARCULA MARISMORTUI,ESCHERICHIA COLI,HALOARCULA MARISMORTUI 1S72 REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION X-RAY DIFFRACTION 6-15-04 D.J.KLEIN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME ASSEMBLY, RNA-RNA, PROTEIN-RNA, PROTEIN-PROTEIN 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 4DR1 CRYSTAL STRUCTURE OF THE APO 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS (HB8) X-RAY DIFFRACTION 11-14-12 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME 3.60 THERMUS THERMOPHILUS 2I2T CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-24-06 V.BERK,W.ZHANG,R.D.PAI,J.H.D.CATE RIBOSOME, PROTEIN-NUCLEIC ACID COMPLEXES 3.22 ESCHERICHIA COLI,ESCHERICHIA COLI 3J2H DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 18.80 ESCHERICHIA COLI 4F02 CRYSTAL STRUCTURE OF THE PABP-BINDING SITE OF EIF4G IN COMPLEX WITH RRM1-2 OF PABP AND POLY(A) X-RAY DIFFRACTION 8-08-12 N.SAFAEE TRANSLATION INITIATION, MRNA, EUKARYOTIC INITIATION FACTORS (EIFS), PAIP1 AND PAIP2, TRANSLATION-RNA COMPLEX 2.00 synthetic 3HOZ COMPLETE RNA POLYMERASE II ELONGATION COMPLEX IV WITH A T-U MISMATCH AND A FRAYED RNA 3'-GUANINE X-RAY DIFFRACTION 7-28-09 J.F.SYDOW,F.BRUECKNER,A.C.M.CHEUNG,G.E.DAMSMA,S.DENGL, E.LEHMANN,D.VASSYLYEV,P.CRAMER RNA-FRAYING, RNA POLYMERASE II, METAL BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, DNA-RNA MISMATCH, RNA FRAYING, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID COMPLEX 3.65 synthetic 1K9W HIV-1(MAL) RNA DIMERIZATION INITIATION SITE X-RAY DIFFRACTION 11-30-01 E.ENNIFAR,P.WALTER,B.EHRESMANN,C.EHRESMANN,P.DUMAS HIV, RNA, HAIRPIN 3.10 synthetic 4BYV CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX ELECTRON MICROSCOPY 11-20-13 I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, S.H.W.SCHERES RIBOSOME, RIBOSOME INITIATION COMPLEX, INITIATOR FACTOR EIF5B, SINGLE PARTICLE ANALYSIS 6.60 SACCHAROMYCES CEREVISIAE 2B8S STRUCTURE OF HIV-1(MAL) GENOMIC RNA DIS X-RAY DIFFRACTION 10-25-05 E.ENNIFAR,P.WALTER,B.EHRESMANN,C.EHRESMANN,P.DUMAS HIV-1, RNA, HAIRPIN 2.76 synthetic 3GIB CRYSTAL STUCTURE OF THE COMPLEX OF THE E. COLI HFQ WITH POLY(A) X-RAY DIFFRACTION 11-17-09 T.M.LINK,P.VALENTIN-HANSEN,R.G.BRENNAN RNA BINDING PROTEIN, HFQ-RNA COMPLEX, DEGRADOSOME COMPONENT, DNA-BINDING, RNA-BINDING, STRESS RESPONSE, RNA BINDING PROTEIN/RNA COMPLEX 2.40 synthetic 1A9N CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B''-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUCLEAR RNA X-RAY DIFFRACTION 9-23-98 S.R.PRICE,P.R.EVANS,K.NAGAI COMPLEX (NUCLEAR PROTEIN/RNA), RNA, SNRNP, RIBONUCLEOPROTEIN, RNA BINDING PROTEIN/RNA COMPLEX 2.38 HOMO SAPIENS 3I62 STRUCTURE OF MSS116P BOUND TO SSRNA AND ADP-ALUMINUM FLUORIDE X-RAY DIFFRACTION 9-08-09 M.DEL CAMPO,A.M.LAMBOWITZ PROTEIN-RNA COMPLEX, RNA HELICASE, DEAD-BOX, ATP-BINDING, HELICASE, HYDROLASE, MITOCHONDRION, MRNA PROCESSING, MRNA SPLICING, NUCLEOTIDE-BINDING, RNA-BINDING, TRANSIT PEPTIDE, TRANSLATION REGULATION, HYDROLASE/RNA COMPLEX 1.95 synthetic 1VQN THE STRUCTURE OF CC-HPMN AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic,synthetic 2VHN STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4) X-RAY DIFFRACTION 2-26-08 R.BINGEL-ERLENMEYER,R.KOHLER,G.KRAMER,A.SANDIKCI,S.ANTOLIC, T.MAIER,C.SCHAFFITZEL,B.WIEDMANN,B.BUKAU,N.BAN TRANSLATION, PEPTIDE DEFORMYLASE, RNA-PROTEIN COMPLEX, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, 50S RIBOSOMAL SUBUNIT, ANTIBIOTIC RESISTANCE, RIBOSOME, NASCENT CHAIN PROCESSING, RNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, PROTEIN BIOSYNTHESIS 3.74 ESCHERICHIA COLI,ESCHERICHIA COLI 1IBM STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE X-RAY DIFFRACTION 5-04-01 J.M.OGLE,D.E.BRODERSEN,W.M.CLEMONS JR.,M.J.TARRY,A.P.CARTER, V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, A SITE, DECODING, TRANSFER TRNA, ANTICODON, STEM-LOOP, MESSENGER RNA, MRNA, CODON 3.31 THERMUS THERMOPHILUS,synthetic,synthetic,synthetic 4BBS STRUCTURE OF AN INITIALLY TRANSCRIBING RNA POLYMERASE II- TFIIB COMPLEX X-RAY DIFFRACTION 11-14-12 S.SAINSBURY,J.NIESSER,P.CRAMER TRANSCRIPTION 3.60 SACCHAROMYCES CEREVISIAE 2KRZ SOLUTION STRUCTURE OF THE HUMAN MITOCHONDRIAL TRNAMET SOLUTION NMR 8-18-10 Y.BILBILLE,P.F.AGRIS RNA, TRNA, METHIONINE, ASL, MODIFICATION synthetic 2XNR STRUCTURAL INSIGHTS INTO CIS ELEMENT RECOGNITION OF NON- POLYADENYLATED RNAS BY THE NAB3-RRM X-RAY DIFFRACTION 9-08-10 B.M.LUNDE,M.HORNER,A.MEINHART RNA BINDING PROTEIN-RNA COMPLEX, TRANSCRIPTION TERMINATION, RNA RECOGNITION, RRM, RNA PROCESSING 1.60 SACCHAROMYCES CEREVISIAE 4LGT CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF RLUB IN COMPLEX WITH A 21-NUCLEOTIDE RNA SUBSTRATE X-RAY DIFFRACTION 11-20-13 N.CZUDNOCHOWSKI,J.S.FINER-MOORE,R.M.STROUD BETA SHEET ALPHA-BETA PROTEIN, RRNA MODIFICATION PEUDOURIDINE SYNTHASE, E. COLI RIBOSOMAL RNA, ISOMERASE-RNA COMPLEX 1.30 synthetic 3J5J E. COLI 70S-FMETVAL-TRNAVAL POST-TRANSLOCATION COMPLEX (POST4, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 9.00 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2DEU COCRYSTAL STRUCTURE OF AN RNA SULFURATION ENZYME MNMA AND TRNA-GLU IN THE ADENYLATED INTERMEDIATE STATE X-RAY DIFFRACTION 8-15-06 T.NUMATA,Y.IKEUCHI,S.FUKAI,T.SUZUKI,O.NUREKI PROTEIN-RNA COMPLEX, ADENYLATED INTERMEDIATE OF RNA, TRANSFERASE/RNA COMPLEX 3.40 synthetic 3RG5 CRYSTAL STRUCTURE OF MOUSE TRNA(SEC) X-RAY DIFFRACTION 6-08-11 M.C.WAHL,O.M.GANICHKIN,E.A.ANEDCHENKO METAL BINDING BY RNA, RNA HYDRATION, STRUCTURAL FLEXIBILITY, TRNASEC, TRNA FOLD, TRANSLATION, SERRS, SECS, PSTK, RNA 2.00 MUS MUSCULUS 2AO5 CRYSTAL STRUCTURE OF AN RNA DUPLEX R(GGCGBRUGCGCU)2 WITH TERMINAL AND INTERNAL TANDEM G-U BASE PAIRS X-RAY DIFFRACTION 3-28-06 R.UTSUNOMIYA,K.SUTO,D.BALASUNDARESAN,A.FUKAMIZU,P.K.KUMAR, H.MIZUNO G-U BASE PAIR, RNA DUPLEX 2.10 synthetic 2GUN RNA-BINDING AFFINITIES AND CRYSTAL STRUCTURE OF OLIGONUCLEOTIDES CONTAINING FIVE-ATOM AMIDE-BASED BACKBONE STRUCTURES X-RAY DIFFRACTION 8-01-06 P.S.PALLAN,M.EGLI DNA:RNA HYBRID, AMIDE BEARING DNA, THYMIDINE DIMERS, INTERNUCLEOSIDIC AMIDE LINKAGE, DNA, RNA, DNA/RNA COMPLEX 2.80 synthetic 1F78 SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, METAL BINDING SITE, METAL COMPLEX, COBALT (III) HEXAMMINE COMPLEX synthetic 2L94 STRUCTURE OF THE HIV-1 FRAMESHIFT SITE RNA BOUND TO A SMALL MOLECULE INHIBITOR OF VIRAL REPLICATION SOLUTION NMR 6-15-11 R.J.MARCHESCHI,M.TONELLI,A.KUMAR,S.E.BUTCHER RNA, INHIBITOR, RNA-INHIBITOR COMPLEX synthetic 2O32 SOLUTION STRUCTURE OF U2 SNRNA STEM I FROM HUMAN, CONTAINING MODIFIED NUCLEOTIDES SOLUTION NMR 2-06-07 D.G.SASHITAL,V.VENDITTI,C.G.ANGERS,G.CORNILESCU,S.E.BUTCHER RNA, WOBBLE BASE-PAIRS, TETRALOOP synthetic 2GQ4 CRYSTAL STRUCTURE OF AN RNA RACEMATE X-RAY DIFFRACTION 6-27-06 W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL, V.A.ERDMANN DEOUBLE HELIX, RACEMATE, RNA 1.35 synthetic,synthetic 2QWY SAM-II RIBOSWITCH BOUND TO S-ADENOSYLMETHIONINE X-RAY DIFFRACTION 1-22-08 S.D.GILBERT,R.P.RAMBO,D.VAN TYNE,R.T.BATEY MRNA, RIBOSWITCH, SAM, S-ADENOSYLMETHIONINE, ADOMET, RNA- LIGAND COMPLEX, DOUBLE HELIX, PSEUDOKNOT, BASE TRIPLE 2.80 synthetic 259D RNA HYDRATION: A DETAILED LOOK X-RAY DIFFRACTION 8-26-96 M.EGLI,S.PORTMANN,N.USMAN A-RNA, DOUBLE HELIX 1.46 synthetic 2KP4 STRUCTURE OF 2'F-ANA/RNA HYBRID DUPLEX SOLUTION NMR 2-09-10 C.GONZALEZ,N.MARTIN-PINTADO,J.WATTS,I.GOMEZ-PINTO,M.DHAMA,M.OROZCO, J.SCHWARTZENTRUBER,G.PORTELLA -DEOXY-2-FLUORO-D-ARABINOSE, FANA, NUCLEIC ACID STRUCTURE, NMR/MD/TI, HYBRID DUPLEX, DNA-RNA COMPLEX synthetic 486D X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES X-RAY DIFFRACTION 10-04-99 J.H.CATE,M.M.YUSUPOV,G.ZH.YUSUPOVA,T.N.EARNEST,H.F.NOLLER FUNCTIONAL MODELS OF 70S RIBOSOME, TRNA 7.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,SACCHAROMYCES CEREVISIAE,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic,synthetic 1I9V CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX X-RAY DIFFRACTION 6-04-01 N.E.MIKKELSEN,K.JOHANSSON,A.VIRTANEN,L.A.KIRSEBOM AMINO-ACID TRANSPORT, YEAST, PHE-TRNA,PHENYLALANINE, TRANSFER RNA, AMINOGLYCOSIDE, NEOMYCIN B 2.60 SACCHAROMYCES CEREVISIAE 1YG4 SOLUTION STRUCTURE OF THE SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, REGULARIZED AVERAGE STRUCTURE SOLUTION NMR 12-13-05 P.V.CORNISH,M.HENNIG,D.P.GIEDROC RNA PSEUDOKNOT; RIBOSOMAL FRAMESHIFTING; PROTONATED CYTIDINE synthetic 4FEL CRYSTAL STRUCTURE OF THE U25A/A46G MUTANT OF THE XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN IN COMPLEX WITH HYPOXANTHINE X-RAY DIFFRACTION 2-27-13 C.D.STODDARD,J.J.TRAUSCH,J.WIDMANN,J.MARCANO,R.KNIGHT,R.T.BATEY THREE-WAY JUNCTION WITH DISTAL TERTIARY INTERACTION, GENETIC REGULATORY ELEMENT, HYPOXANTHINE, RNA 1.60 synthetic 1MZP STRUCTURE OF THE L1 PROTUBERANCE IN THE RIBOSOME X-RAY DIFFRACTION 1-21-03 A.NIKULIN,I.ELISEIKINA,S.TISHCHENKO,N.NEVSKAYA,N.DAVYDOVA, O.PLATONOVA,W.PIENDL,M.SELMER,A.LILJAS,R.ZIMMERMANN, M.GARBER,S.NIKONOV RIBOSOME, RIBOSOMAL PROTEIN, RNA-PROTEIN COMPLEX 2.65 synthetic 4E6B CRYSTAL STRUCTURE OF STATISTICALLY DISORDERED 19MER DUPLEX P(CGG) 3C(CUG)3 X-RAY DIFFRACTION 7-11-12 L.MALININA,A.POPOV,J.TAMJAR SIRNA, TRINUCLEOTIDE REPEAT EXPANSION, RNA 1.47 synthetic,synthetic 2M1O ID3 STEM SOLUTION NMR 2-13-13 M.POPOVIC,N.L.GREENBAUM ID3, GROUP II INTRON, STEM, AI5 GAMMA, RNA synthetic,synthetic 1KD3 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2, THALLIUM FORM X-RAY DIFFRACTION 3-04-03 V.KACER,S.A.SCARINGE,J.N.SCARSDALE,J.P.RIFE RNA DUPLEX, METAL BINDING 1.80 synthetic 2CV2 GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU) AND AN ENZYME INHIBITOR, GLU-AMS X-RAY DIFFRACTION 9-05-06 S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) LIGASE, RNA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE/RNA COMPLEX 2.69 synthetic 2LBS SOLUTION STRUCTURE OF DOUBLE-STRANDED RNA BINDING DOMAIN OF S. CEREVISIAE RNASE III (RNT1P) IN COMPLEX WITH AAGU TETRALOOP HAIRPIN SOLUTION NMR 8-31-11 Z.WANG,E.HARTMAN,K.ROY,G.CHANFREAU,J.FEIGON DSRBD, AAGU TETRALOOP, HYDROLASE-RNA COMPLEX synthetic 1KXK CRYSTAL STRUCTURE OF A RNA MOLECULE CONTAINING DOMAIN 5 AND 6 OF THE YEAST AI5G GROUP II SELF-SPLICING INTRON X-RAY DIFFRACTION 3-22-02 L.ZHANG,J.A.DOUDNA DOUBLE HELIX, TETRALOOP, TETRALOOP RECEPTOR, TWO-NUCLEOTIDE BULGE, RNA 3.00 synthetic 2JLT CRYSTAL STRUCTURE OF AN RNA KISSING COMPLEX X-RAY DIFFRACTION 8-18-09 C.DIPRIMO,S.FRIBOURG RNA, KISSING COMPLEX 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 3EOG CO-CRYSTALLIZATION SHOWING EXON RECOGNITION BY A GROUP II INTRON X-RAY DIFFRACTION 10-28-08 N.TOOR,K.RAJASHANKAR,K.S.KEATING,A.M.PYLE RNA, RIBONUCLEIC ACID, INTRON, GROUP II, EXON 3.39 synthetic,synthetic 3IYQ TMRNA-SMPB: A JOURNEY TO THE CENTER OF THE BACTERIAL RIBOSOME ELECTRON MICROSCOPY 10-20-10 F.WEIS,P.BRON,E.GIUDICE,J.P.ROLLAND,D.THOMAS,B.FELDEN,R.GILLET TMRNA, SMPB, RIBOSOME, TRANS-TRANSLATION, RIBOSOMAL PROTEIN-RNA COMPLEX 13.00 THERMUS THERMOPHILUS 3PYQ CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 FROM THE PSIV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1WMQ STRUCTURE OF THE HUTP ANTITERMINATION COMPLEX BOUND TO A SINGLE STRANDED REGION OF HUT MRNA X-RAY DIFFRACTION 3-15-05 T.S.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR HUTP, PROTEIN-RNA COMPLEX, ANTITERMINATION, RNA BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTION/RNA COMPLEX 1.60 synthetic 4DR4 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS (HB8) 30S RIBOSOMAL SUBUNIT WITH CODON, COGNATE TRANSFER RNA ANTICODON STEM-LOOP AND MULTIPLE COPIES OF PAROMOMYCIN MOLECULES BOUND X-RAY DIFFRACTION 11-14-12 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.97 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2KUR SOLUTION STRUCTURE OF K10 TLS RNA (AU MUTANT IN UPPER HELIX) SOLUTION NMR 5-19-10 S.L.BULLOCK,I.RINGEL,D.ISH-HOROWICZ,P.J.LUKAVSKY RNA TRANSPORT, RNA HAIRPIN, RNA DROSOPHILA MELANOGASTER 2OJ7 NMR STRUCTURE OF THE UGUU TETRALOOP OF DUCK EPSILON APICAL STEM LOOP SOLUTION NMR 5-22-07 F.C.GIRARD,O.M.OTTINK,K.A.M.AMPT,M.TESSARI,S.S.WIJMENGA HBV, RNA, EPSILON, DUCK, NMR, UGUU, TETRALOOP synthetic 4KDG S RIBOSOME TRANSLOCATION INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT A. THE 50S SUBUNIT A CAN BE FOUND IN 4KDH. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDJ (30S) AND 4KDK (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA 4.00 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 2IHX SOLUTION STRUCTURE OF THE ROUS SARCOMA VIRUS NUCLEOCAPSID PROTEIN:UPSI RNA PACKAGING SIGNAL COMPLEX SOLUTION NMR 1-16-07 J.ZHOU,M.SUMMERS PROTEIN-RNA COMPLEX, VIRAL PROTEIN/RNA COMPLEX ROUS SARCOMA VIRUS 1U9S CRYSTAL STRUCTURE OF THE SPECIFICITY DOMAIN OF RIBONUCLEASE P OF THE A-TYPE X-RAY DIFFRACTION 10-26-04 A.S.KRASILNIKOV,Y.XIAO,T.PAN,A.MONDRAGON RNASE P, RIBONUCLEASE P RNA, P RNA, SPECIFICITY DOMAIN, S- DOMAIN, RIBOZYME, TRNA, PRE-TRNA, THERMUS THERMOPHILUS 2.90 synthetic 4GL2 STRUCTURAL BASIS FOR DSRNA DUPLEX BACKBONE RECOGNITION BY MDA5 X-RAY DIFFRACTION 1-09-13 B.WU,S.HUR MDA5, DSRNA, ANTI-VIRAL SIGNALING, RIG-I, MAVS, OLIGOMERIZATION, HELICASE, ATPASE, FILAMENT FORMATION, RNA BINDING PROTEIN-RNA COMPLEX 3.56 synthetic,synthetic 2C4R CATALYTIC DOMAIN OF E. COLI RNASE E X-RAY DIFFRACTION 10-25-05 M.J.MARCAIDA,A.J.CALLAGHAN,B.F.LUISI RNA BINDING, RNA TURNOVER, RNA PROCESSING, HYDROLASE, ENDONUCLEASE, NUCLEASE 3.6 ESCHERICHIA COLI 1Z58 CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN X-RAY DIFFRACTION 6-28-05 M.AMIT,R.BERISIO,D.BARAM,J.HARMS,A.BASHAN,A.YONATH RIBOSOME, TUNNEL, POLYKETYDE 3.80 DEINOCOCCUS RADIODURANS 2F4U ASITE RNA + DESIGNER ANTIBIOTIC X-RAY DIFFRACTION 5-02-06 J.B.MURRAY,S.O.MEROUEH,R.J.RUSSELL,G.LENTZEN,J.HADDAD, S.MOBASHERY ASITE RNA, DESIGNER ANTIBIOTIC 2.60 synthetic 3CMA THE STRUCTURE OF CCA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 9-23-08 M.SIMONOVIC,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL-TRNA HYDROLYSIS 2.80 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic,synthetic 2XS2 CRYSTAL STRUCTURE OF THE RRM DOMAIN OF MOUSE DELETED IN AZOOSPERMIA-LIKE IN COMPLEX WITH RNA, UUGUUCUU X-RAY DIFFRACTION 10-05-11 H.T.JENKINS,T.A.EDWARDS RNA BINDING PROTEIN-RNA COMPLEX 1.35 MUS MUSCULUS 1EUQ CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR X-RAY DIFFRACTION 6-04-00 L.D.SHERLIN,T.L.BULLOCK,K.J.NEWBERRY,R.S.A.LIPMAN,Y.-M.HOU, B.BEIJER,B.S.SPROAT,J.J.PERONA TRNA SYNTHETASE, GLUTAMINE, TRNAGLN, E. COLI, RNA/PROTEIN COMPLEX, LIGASE/RNA COMPLEX 3.10 synthetic 2WWB CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME ELECTRON MICROSCOPY 12-08-09 T.BECKER,E.MANDON,S.BHUSHAN,A.JARASCH,J.P.ARMACHE,S.FUNES, F.JOSSINET,J.GUMBART,T.MIELKE,O.BERNINGHAUSEN,K.SCHULTEN, E.WESTHOF,R.GILMORE,R.BECKMANN RIBOSOME, PROTEIN EXIT TUNNEL, COTRANSLATIONAL PROTEIN TRANSLOCATION, PROTEIN CONDUCTING CHANNEL, SIGNAL SEQUENCE 6.48 TRITICUM AESTIVUM,TRITICUM AESTIVUM,TRITICUM AESTIVUM,TRITICUM AESTIVUM 1MUV SHEARED A(ANTI)-A(ANTI) BASE PAIRS IN A DESTABILIZING 2X2 INTERNAL LOOP: THE NMR STRUCTURE OF 5'(RGGCAAGCCU)2 SOLUTION NMR 12-18-02 B.M.ZNOSKO,M.E.BURKARD,S.J.SCHROEDER,T.R.KRUGH,D.H.TURNER RIBONUCLEIC ACID, DUPLEX, TANDEM MISMATCH, AA MISMATCH, RNA synthetic 3I4N -OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLEX E X-RAY DIFFRACTION 9-08-09 G.E.DAMSMA,P.CRAMER RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, 8-OXOGUANINE, DNA DAMAGE, OXIDATIVE DAMAGE, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA REPAIR, MRNA PROCESSING, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.90 synthetic 3V6X CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G347U. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATIONS, RAM, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, PAROMOMYCIN AS CRYSTALLIZATION AGENT, RIBOSOME 3.90 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3RZO RNA POLYMERASE II INITIATION COMPLEX WITH A 4-NT RNA X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.00 synthetic 1Y0Q CRYSTAL STRUCTURE OF AN ACTIVE GROUP I RIBOZYME-PRODUCT COMPLEX X-RAY DIFFRACTION 12-21-04 B.L.GOLDEN,H.KIM,E.CHASE RIBOZYME, RNA-SPLICING, GUANOSINE-BINDING, RNA-FOLDING 3.60 STAPHYLOCOCCUS PHAGE TWORT,synthetic 2ZM6 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 4-14-09 T.KAMINISHI,H.WANG,M.KAWAZOE,R.ISHII,F.SCHLUENZEN,K.HANAWA- SUETSUGU,D.N.WILSON,M.NOMURA,C.TAKEMOTO,M.SHIROUZU,P.FUCINI, S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) S RIBOSOMAL SUBUNIT, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, RIBOSOME, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI 3.30 THERMUS THERMOPHILUS 2VHP STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4) X-RAY DIFFRACTION 2-26-08 R.BINGEL-ERLENMEYER,R.KOHLER,G.KRAMER,A.SANDIKCI,S.ANTOLIC, T.MAIER,C.SCHAFFITZEL,B.WIEDMANN,B.BUKAU,N.BAN TRANSLATION, PEPTIDE DEFORMYLASE, RNA-PROTEIN COMPLEX, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, 30S RIBOSOMAL SUBUNIT, ANTIBIOTIC RESISTANCE, RIBOSOME, NASCENT CHAIN PROCESSING, RNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, PROTEIN BIOSYNTHESIS 3.74 ESCHERICHIA COLI 2Y10 THE CRYSTAL STRUCTURE OF EF-TU AND TRP-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2WH1 INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME X-RAY DIFFRACTION 5-19-09 A.WEIXLBAUMER,H.JIN,C.NEUBAUER,R.M.VOORHEES,S.PETRY, A.C.KELLEY,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TERMINATION, RRNA-BINDING, TRNA-BINDING, METAL-BINDING, RF2, TRNA, ZINC, MRNA, RIBOSOME, CYTOPLASM, PROTEIN BIOSYNTHESIS, ZINC-FINGER, RNA-BINDING, TRANSLATION, COILED COIL 3.45 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 3GS8 AN ALL-RNA HAIRPIN RIBOZYME A38N1DA38 VARIANT WITH A TRANSITION-STATE MIMIC SUBSTRATE STRAND X-RAY DIFFRACTION 4-21-09 R.C.SPITALE,R.VOLPINI,M.G.HELLER,J.KRUCINSKA,G.CRISTALLI, J.E.WEDEKIND HAIRPIN RIBOZYME, RNA RIBOZYME, N1-DEAZAADENOSINE 2.85 synthetic,synthetic,synthetic,synthetic 2V49 STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT OF MOLECULE 2. X-RAY DIFFRACTION 7-31-07 A.WEIXLBAUMER,S.PETRY,C.M.DUNHAM,M.SELMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOME, RRF, RECYCLING, TRNA, MRNA, TRANSLATION 3.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3TD0 CRYSTAL STRUCTURE OF THE BACTERIAL A1408G-MUTANT AND THE PROTOZOA CYTOPLASMIC RIBOSOMAL DECODING SITE X-RAY DIFFRACTION 12-07-11 J.KONDO DECODING, RIBOSOME, RNA 1.60 synthetic 1XSG SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM OLIGORIBONUCLEOTIDE, U69A MUTATION SOLUTION NMR 12-28-04 M.SCHMITZ RIBONUCLEASE P RNA, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, U69A MUTANT, METAL BINDING SITE synthetic 2YIE CRYSTAL STRUCTURE OF A F. NUCLEATUM FMN RIBOSWITCH BOUND TO FMN X-RAY DIFFRACTION 8-31-11 Q.VICENS,E.MONDRAGON,R.T.BATEY RNA 2.94 FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM,FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM 1I3X SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA SOLUTION NMR 4-04-01 S.C.BLANCHARD,J.D.PUGLISI A LOOP, A SITE, 23S RRNA synthetic 1ESY NMR STRUCTURE OF STEM LOOP SL2 OF THE HIV-1 PSI RNA PACKAGING SIGNAL REVEALS A NOVEL A-U-A BASE-TRIPLE PLATFORM SOLUTION NMR 5-31-00 G.K.AMARASINGHE,R.N.DE GUZMAN,R.B.TURNER,M.F.SUMMERS HIV-1, RNA, SPLICE-DONOR SITE, PLATFORM MOTIF synthetic 3BBV THE TRNA(PHE) FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX ELECTRON MICROSCOPY 10-21-08 L.JIANG,J.P.ABRAHAMS PHE, TRNA, RESCUE STALLED RIBOSOME, RIBOSOME 10.00 THERMUS THERMOPHILUS 1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN X-RAY DIFFRACTION 9-25-00 A.P.CARTER,W.M.CLEMONS JR.,D.E.BRODERSEN,B.T.WIMBERLY, R.J.MORGAN-WARREN,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, ANTIBIOTIC, STREPTOMYCIN, SPECTINOMYCIN, PAROMOMYCIN 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3CCJ STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION C2534U X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL C2534U MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, RIBOSOME 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 377D '-R(*CP*GP*UP*AP*CP*DG)-3' X-RAY DIFFRACTION 8-10-98 R.BISWAS,S.N.MITRA,M.SUNDARALINGAM A-RNA, DOUBLE HELIX 1.76 synthetic 4GZY CRYSTAL STRUCTURES OF BACTERIAL RNA POLYMERASE PAUSED ELONGATION COMPLEXES X-RAY DIFFRACTION 2-13-13 A.WEIXLBAUMER,K.LEON,R.LANDICK,S.A.DARST RNA POLYMERASE, TRANSCRIPTION, PAUSED TRANSCRIPTION ELONGATION COMPLEX, TRANSCRIPTIONAL PAUSING, DNA DIRECTED RNA TRANSCRIPTION, TRANSCRIPTION-DNA-RNA COMPLEX 3.51 SYNTHETIC 3G4S CO-CRYSTAL STRUCTURE OF TIAMULIN BOUND TO THE LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 4-28-09 G.GUREL,G.BLAHA,P.B.MOORE,T.A.STEITZ LARGE RIBOSOMAL SUBUNIT, TIAMULIN, HALOARCULA MARISMORTUI, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, ACETYLATION, RIBOSOME 3.20 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 4L8H BACTERIOPHAGE QBETA COAT PROTEIN IN COMPLEX WITH RNA OPERATOR HAIRPIN X-RAY DIFFRACTION 10-02-13 J.RUMNIEKS,K.TARS ALPHA BETA 2-LAYER SANDWICH, LEVIVIRUS COAT PROTEIN, STRUCTURAL, TRANSLATIONAL REPRESSOR, RNA BINDING, VIRION, STRUCTURAL PROTEIN 2.40 synthetic 1KOS SOLUTION NMR STRUCTURE OF AN ANALOG OF THE YEAST TRNA PHE T STEM LOOP CONTAINING RIBOTHYMIDINE AT ITS NATURALLY OCCURRING POSITION SOLUTION NMR 10-22-99 K.M.KOSHLAP,R.GUENTHER,E.SOCHACKA,A.MALKIEWICZ,P.F.AGRIS TRNA, T STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, RNA FOLDING synthetic 1N8R STRUCTURE OF LARGE RIBOSOMAL SUBUNIT IN COMPLEX WITH VIRGINIAMYCIN M X-RAY DIFFRACTION 7-22-03 J.L.HANSEN,P.B.MOORE,T.A.STEITZ RIBOSOME, VIRGINIAMYCIN M, STREPTOGRAMIN, ANTIBIOTIC 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1R9S RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE X-RAY DIFFRACTION 11-16-04 K.D.WESTOVER,D.A.BUSHNELL,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION/DNA/RNA COMPLEX, TRANSCRIPTION/DNA-RNA HYBRID COMPLEX 4.25 synthetic 1SFO RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX X-RAY DIFFRACTION 3-02-04 K.D.WESTOVER,D.A.BUSHNELL,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION/DNA-RNA HYBRID COMPLEX 3.61 synthetic 1ZEV CRYSTAL STRUCTURE OF A PATHOGENIC RNA: CUG REPEATS X-RAY DIFFRACTION 10-25-05 B.H.MOOERS,J.S.LOGUE,J.A.BERGLUND UU MISMATCHES, TRIPLET REPEATS, CAUSITIVE AGENT OF MYOTONIC DYSTROPHY TYPE I, RNA 1.58 synthetic 3I9E INITIATION COMPLEX OF 70S RIBOSOME WITH TWO TRNAS AND MRNA. THIS ENTRY 3I9E CONTAINS 50S RIBOSOMAL SUBUNIT OF MOLECULE A. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I9D. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I9B (30S) AND 3I9C (50S) X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA, 5S RIBOSOMAL RNA, RIBOSOMAL RNA, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METAL-BINDING, ZINC 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3K62 CRYSTAL STRUCTURE OF FBF-2/GLD-1 FBEB COMPLEX X-RAY DIFFRACTION 11-03-09 Y.WANG,L.OPPERMAN,M.WICKENS,T.M.T.HALL FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE FLIPPING, BASE STACKING 1.90 synthetic 3AVT STRUCTURE OF VIRAL RNA POLYMERASE COMPLEX 1 X-RAY DIFFRACTION 1-18-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 2.61 synthetic 3S14 RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 2.85 synthetic 4MDX CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAZF IN COMPLEX WITH RNA X-RAY DIFFRACTION 10-23-13 D.K.SIMANSHU,D.J.PATEL TOXIN-ANTITOXIN COMPLEX, TOXIN-MRNA COMPLEX, MAZF, MRNA INTERFERASE, ENDOA, YDCE, TOXIN, ANTITOXIN, MAZE, HYDROLASE-RNA COMPLEX 1.50 synthetic 1Y73 HIV-1 DIS(MAL) DUPLEX PT-SOAKED X-RAY DIFFRACTION 12-21-04 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, RNA, METAL IONS 2.90 synthetic 1PJO CRYSTAL STRUCTURE OF AN RNA/DNA HYBRID OF HIV-1 PPT X-RAY DIFFRACTION 12-09-03 M.L.KOPKA,L.LAVELLE,G.W.HAN,H.-L.NG,R.E.DICKERSON RNA/DNA HYBRID; POLYPURINE TRACT OF HIV-1; MOLEUCLAR REPLACEMENT; SUGAR CONFORMATION, DNA/RNA COMPLEX, DNA-RNA HYBRID 1.10 synthetic 1Y1W COMPLETE RNA POLYMERASE II ELONGATION COMPLEX X-RAY DIFFRACTION 1-04-05 P.CRAMER,H.KETTENBERGER,K.-J.ARMACHE RNA POLYMERASE II, TRANSCRIPTION BUBBLE, TRANSCRIPTION, ELONGATION COMPLEX, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 4.00 synthetic 4KZZ RABBIT 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH MRNA, INITIATOR TRNA AND EIF1A X-RAY DIFFRACTION 7-24-13 I.B.LOMAKIN,T.A.STEITZ RIBOSOME, TRANSLATION INITIATION 7.03 ORYCTOLAGUS CUNICULUS,HOMO SAPIENS,SYNTHETIC 3D5B STRUCTURAL BASIS FOR TRANSLATION TERMINATION ON THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-07-08 M.LAURBERG,H.ASAHARA,A.KOROSTELEV,J.ZHU,S.TRAKHANOV, H.F.NOLLER RIBOSOME, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METAL-BINDING, ZINC 3.21 THERMUS THERMOPHILUS HB27,THERMUS THERMOPHILUS HB27 4JUW CRYSTAL STRUCTURE OF THE RIBOSOME BOUND TO ELONGATION FACTOR G IN THE GUANOSINE TRIPHOSPHATASE STATE (THIS FILE CONTAINS THE 30S SUBUNIT) X-RAY DIFFRACTION 6-26-13 D.S.TOURIGNY,I.S.FERNANDEZ,A.C.KELLEY,V.RAMAKRISHNAN BACTERIAL PROTEINS, CATALYSIS, MODELS, MOLECULAR, PEPTIDE ELONGATION FACTOR G, PROTEIN BIOSYNTHESIS, PROTEIN CONFORMATION, PROTEIN STRUCTURE, TERTIARY, RNA, BACTERIAL, MESSENGER, TRANSFER, RIBOSOMES, THERMUS THERMOPHILUS, RIBOSOME, HYBRID STATE, GUANOSINE TRIPHOSPHATE, GUANOSINE TRIPHOSPHATASE 2.86 THERMUS THERMOPHILUS,ESCHERICHIA COLI,SYNTHETIC CONSTRUCT 2IRO THE NMR STRUCTURES OF (RGCUGAGGCU)2 AND (RGCGGAUGCU)2 SOLUTION NMR 2-20-07 B.S.TOLBERT RNA INTERNAL LOOPS, SHEARED GA PAIRS, SHEARED GU PAIRS, NON CANONICAL PAIRS, THERMODYNAMICS synthetic 3T5N .8A CRYSTAL STRUCTURE OF LASSA VIRUS NUCLEOPROTEIN IN COMPLEX WITH SSRNA X-RAY DIFFRACTION 1-11-12 K.M.HASTIE,T.LIU,L.B.KING,N.NGO,M.A.ZANDONATTI,V.L.WOODS,J.C.DE LA TORRE,E.O.SAPHIRE SSRNA, SINGLE STRANDED RNA, VIRAL PROTEIN-RNA COMPLEX 1.79 ESCHERICHIA COLI 1WZ2 THE CRYSTAL STRUCTURE OF LEUCYL-TRNA SYNTHETASE AND TRNA(LEUCINE) COMPLEX X-RAY DIFFRACTION 9-06-05 R.FUKUNAGA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) LIGASE, TRNA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 3.21 synthetic 1UVK THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 DEAD-END COMPLEX X-RAY DIFFRACTION 2-19-04 P.S.SALGADO,E.V.MAKEYEV,S.BUTCHER,D.BAMFORD,D.I.STUART, J.M.GRIMES POLYMERASE/COMPLEX, RNA-DEPENDENT RNA POLYMERASE, OLIGONUCLEOTIDE, POLYMERASE 2.45 synthetic 1YXP HIV-1 DIS RNA SUBTYPE F- ZN SOAKED X-RAY DIFFRACTION 1-31-06 E.ENNIFAR,P.DUMAS HIV-1, RNA, KISSING-LOOP, METAL IONS 2.40 synthetic 1EUY GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR X-RAY DIFFRACTION 6-04-00 L.D.SHERLIN,T.L.BULLOCK,K.J.NEWBERRY,R.S.A.LIPMAN,Y.-M.HOU, B.BEIJER,B.S.SPROAT,J.J.PERONA TRNA SYNTHETASE, GLUTAMINE, TRNAGLN, E. COLI, COMPLEX, LIGASE/RNA COMPLEX 2.60 synthetic 2Y15 THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3CGR X-RAY STRUCTURE CONTAINING THE PSEUDOURIDYLATED U2 SNRNA AND INTRON BRANCH SITE CONSENSUS SEQUENCES X-RAY DIFFRACTION 7-01-08 Y.LIN,C.L.KIELKOPF RNA DOUBLE HELIX, BRANCHPOINT SEQUENCE, BPS, U2 SNRNA, PSEUDOURIDINE, PRE-MRNA SPLICING 2.10 synthetic,synthetic 2P7D A MINIMAL, 'HINGED' HAIRPIN RIBOZYME CONSTRUCT SOLVED WITH MIMICS OF THE PRODUCT STRANDS AT 2.25 ANGSTROMS RESOLUTION X-RAY DIFFRACTION 5-22-07 A.T.TORELLI,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME; PRODUCT MIMIC; TRANSITION-STATE STABILIZATION; ACTIVE SITE WATERS; INDUCED FIT, RNA 2.25 synthetic,synthetic,synthetic,synthetic 1VS5 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH THE ANTIBIOTIC KASUGAMYIN AT 3.5A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-26-06 B.S.SCHUWIRTH,A.VILA-SANJURJO,J.H.D.CATE RIBOSOME, KASUGAMYCIN 3.46 ESCHERICHIA COLI 1QFQ BACTERIOPHAGE LAMBDA N-PROTEIN-NUTBOXB-RNA COMPLEX SOLUTION NMR 4-20-99 M.SCHAERPF,H.STICHT,P.ROESCH BACTERIOPHAGE LAMBDA; ANTITERMINATION; PEPTIDE-RNA-COMPLEX; N-NUT; GNRA TETRALOOP; BENT-ALPHA-HELIX; PEPTIDE-RNA- RECOGNITION, TRANSCRIPTION/RNA COMPLEX ENTEROBACTERIA PHAGE LAMBDA 1S9L NMR SOLUTION STRUCTURE OF A PARALLEL LNA QUADRUPLEX SOLUTION NMR 6-29-04 A.RANDAZZO,V.ESPOSITO,O.OHLENSCHLAGER,R.RAMACHANDRAN, L.MAYOLA LNA, QUADRUPLEX, RNA synthetic 464D DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX X-RAY DIFFRACTION 8-16-99 U.MUELLER,Y.A.MULLER,R.HERBST-IRMER,M.SPRINZL,U.HEINEMANN BASE-PAIR TRNA ALA ACCEPTOR STEM, DOUBLE HELIX, RIBONUCLEIC ACID, DISORDERED MODEL 1.23 synthetic,synthetic 2GBH NMR STRUCTURE OF STEM REGION OF HELIX-35 OF 23S E.COLI RIBOSOMAL RNA (RESIDUES 736-760) SOLUTION NMR 4-11-06 A.BAX,J.BOISBOUVIER,D.BRYCE,A.GRISHAEV,C.JARONIEC,E.MICLET, E.NIKONOVICZ,E.O'NEIL-CABELLO,J.YING NMR, RDC, RCSA, RNA synthetic 2ZH5 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDCU X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.60 ARCHAEOGLOBUS FULGIDUS 3ZN8 STRUCTURAL BASIS OF SIGNAL SEQUENCE SURVEILLANCE AND SELECTION BY THE SRP-SR COMPLEX ELECTRON MICROSCOPY 3-06-13 O.VON LOEFFELHOLZ,K.KNOOPS,A.ARIOSA,X.ZHANG,M.KARUPPASAMY,K.HUARD, G.SCHOEHN,I.BERGER,S.O.SHAN,C.SCHAFFITZEL PROTEIN TRANSPORT, HYDROLASE 12.00 ESCHERICHIA COLI 2K5Z SOLUTION STRUCTURE AND DYNAMICS OF THE APICAL STEM-LOOP OF DUCK HEPATITIS B VIRUS SOLUTION NMR 7-14-09 K.A.M.AMPT,M.TESSARI,S.S.WIJMENGA HBV, DUCK, APICAL LOOP, EPSILON, RNA synthetic 1VSA CRYSTAL STRUCTURE OF A 70S RIBOSOME-TRNA COMPLEX REVEALS FUNCTIONAL INTERACTIONS AND REARRANGEMENTS. THIS FILE, 1VSA, CONTAINS THE 50S RIBOSOME SUBUNIT. 30S RIBOSOME SUBUNIT IS IN THE FILE 2OW8 X-RAY DIFFRACTION 5-15-07 A.KOROSTELEV,S.TRAKHANOV,M.LAURBERG,H.F.NOLLER CRYSTAL STRUCTURE, RIBOSOME, FUNCTIONAL COMPLEX, TRNA, E SITE, P SITE, PEPTIDYL TRANSFERASE CENTER 3.71 THERMUS THERMOPHILUS HB27,THERMUS THERMOPHILUS HB27 3BWP CRYSTAL STRUCTURE OF A SELF-SPLICED GROUP II INTRON X-RAY DIFFRACTION 4-15-08 N.TOOR,K.S.KEATING,S.D.TAYLOR,A.M.PYLE RNA, RIBONUCLEIC ACID, INTRON, GROUP II 3.10 synthetic 2DU6 CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS O-PHOSPHOSERYL- TRNA SYNTHETASE E418N/E420N MUTANT COMPLEXED WITH TRNAAMBER AND O-PHOSPHOSERINE ("AMBER COMPLEX") X-RAY DIFFRACTION 3-13-07 R.FUKUNAGA ALPHA4 TETRAMER, LIGASE/RNA COMPLEX 3.30 synthetic 3SN2 CRYSTAL STRUCTURE ANALYSIS OF IRON REGULATORY PROTEIN 1 IN COMPLEX WITH TRANSFERRIN RECEPTOR IRE B RNA X-RAY DIFFRACTION 11-23-11 K.VOLZ,A.I.SELEZNEVA,W.E.WALDEN RNA BINDING, IRON SULFUR CLUSTER BINDING, PHOSPHORYLATION, LYASE-RNA COMPLEX 2.99 synthetic 1N53 SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA SOLUTION NMR 4-29-03 M.S.GERDEMAN,T.M.HENKIN,J.V.HINES RNA, T BOX, BULGE synthetic,synthetic 2HOK CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO THIAMINE PYROPHOSPHATE, CALCIUM IONS X-RAY DIFFRACTION 9-19-06 T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; RIBOSWITCH 3.20 synthetic 2A04 MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE X-RAY DIFFRACTION 9-20-05 Q.ZHAO,F.ZHAO,K.F.BLOUNT,Q.HAN,Y.TOR,T.HERMANN RIBOSOME, RNA, A-SITE. DOUBLE HELIX, NEOMYCIN 2.95 synthetic,synthetic 1ZIG GAGA RNA TETRALOOP, NMR, 10 STRUCTURES SOLUTION NMR 3-12-97 F.M.JUCKER,H.A.HEUS,P.F.YIP,E.MOORS,A.PARDI RIBONUCLEIC ACID, RNA, TETRALOOPS, GNRA, HAIRPIN synthetic 2I2V CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-24-06 V.BERK,W.ZHANG,R.D.PAI,J.H.D.CATE RIBOSOME, PROTEIN-NUCLEIC ACID COMPLEXES 3.22 ESCHERICHIA COLI,ESCHERICHIA COLI 2ZI0 CRYSTAL STRUCTURE OF TAV2B/SIRNA COMPLEX X-RAY DIFFRACTION 7-22-08 Y.A.YUAN,H.-Y.CHEN RNAI SUPPRESSION, COILED COIL, NUCLEUS, SUPPRESSOR OF RNA SILENCING, GENE REGULATION/RNA COMPLEX 2.82 synthetic 2GYA STRUCTURE OF THE 50S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056 ELECTRON MICROSCOPY 9-26-06 K.MITRA,J.FRANK SECM; NASCENT CHAIN; SIGNAL TRANSDUCTION; RNA WORLD; POLYPEPTIDE EXIT TUNNEL; TRANSLOCATION; RIBOSOME; ELONGATION ARREST 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI 2OJ0 CRYSTAL STRUCTURE OF THE DUPLEX FORM OF THE HIV-1(LAI) RNA DIMERIZATION INITIATION SITE MN SOAKED X-RAY DIFFRACTION 12-25-07 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, DIS, RNA, DIMERIZATION, METAL IONS 2.60 synthetic 2AP0 SOLUTION STRUCTURE OF THE C27A SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, 20 LOWEST ENERGY STRUCTURES SOLUTION NMR 9-05-06 P.V.CORNISH,D.P.GIEDROC RNA PSEUDOKNOT; FRAMESHIFTING synthetic 4E58 CRYSTAL STRUCTURE OF GCC(LCG)CCGC DUPLEX CONTAINING LNA RESIDUE X-RAY DIFFRACTION 12-12-12 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,R.RYPNIEWSKI CCG REPEATS, 5' SLIPPERY DUPLEXES, X-LINKED MENTAL RETARDATION, HUNTINGTON'S DISEASE, MYOTONIC DYSTROPHY TYPE 1, LNA GUANOSINE, RNA 1.95 synthetic 3I8I ELONGATION COMPLEX OF THE 70S RIBOSOME WITH THREE TRNAS AND MRNA. THIS ENTRY 3I8I CONTAINS 50S RIBOSOMAL SUBNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I8H. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I8F (50S) AND 3I8G (30S). X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4K32 CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE LEISHMANIAL RRNA A-SITE X-RAY DIFFRACTION 7-31-13 M.SHALEV,J.KONDO,N.ADIR,T.BAASOV RRNA DUPLEX, RIBOSOMAL A-SITE, AMINOGLYCOSIDE, LEISHMANIAL RIBOSOME, RNA, RNA-ANTIBIOTIC COMPLEX 2.50 LEISHMANIA 3J5H E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST3B, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3ADI STRUCTURE OF ARABIDOPSIS HYL1 AND ITS MOLECULAR IMPLICATIONS FOR MIRNA PROCESSING X-RAY DIFFRACTION 5-26-10 Y.A.YUAN,H.Y.CHEN HYL1, MIRNA PROCESSING MECHANISM, RNA BINDING PROTEIN, GENE REGULATION-RNA COMPLEX 3.20 synthetic,synthetic 2BBV THE REFINED THREE-DIMENSIONAL STRUCTURE OF AN INSECT VIRUS AT 2.8 ANGSTROMS RESOLUTION X-RAY DIFFRACTION 8-31-94 J.-P.WERY,V.S.REDDY,M.V.HOSUR,J.E.JOHNSON PROTEIN-RNA COMPLEX, DOUBLE HELIX, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.80 BLACK BEETLE VIRUS 2G5K CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE COMPLEXED WITH APRAMYCIN X-RAY DIFFRACTION 6-20-06 J.KONDO,B.FRANCOIS,A.URZHUMTSEV,E.WESTHOF AMINOGLYCOSIDE, ANTIBIOTICS, APRAMYCIN, RIBOSOME, DECODING SITE, HOMO SAPIENS, CYTOPLASM, RNA 2.80 synthetic 3UZH CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX. X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1AUD U1A-UTRRNA, NMR, 31 STRUCTURES SOLUTION NMR 2-25-98 F.H.-T.ALLAIN,C.C.GUBSER,P.W.A.HOWE,K.NAGAI,D.NEUHAUS, G.VARANI COMPLEX (RIBONUCLEOPROTEIN/RNA), NMR, RNP DOMAIN, RNA BINDING PROTEIN/RNA COMPLEX synthetic 1M8V STRUCTURE OF PYROCOCCUS ABYSSII SM PROTEIN IN COMPLEX WITH A URIDINE HEPTAMER X-RAY DIFFRACTION 2-11-03 S.THORE,C.MAYER,C.SAUTER,S.WEEKS,D.SUCK PROTEIN-RNA COMPLEX, SM PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX 2.60 synthetic 1BZT STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE SOLUTION NMR 4-27-99 P.C.DURANT,D.R.DAVIS TRNA, PSEUDOURIDINE, ANTICODON synthetic 3GAO CRYSTAL STRUCTURE OF THE GUANINE RIBOSWITCH BOUND TO XANTHINE. X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,R.T.BATEY RIBOSWITCH, GUANINE, XANTHINE, MRNA, RNA_LIGAND COMPLEX, THREE-WAY JUNCTION 1.90 synthetic 3HL2 THE CRYSTAL STRUCTURE OF THE HUMAN SEPSECS-TRNASEC COMPLEX X-RAY DIFFRACTION 10-06-09 S.PALIOURA,T.A.STEITZ,D.SOLL,M SIMONOVIC SELENOCYSTEINE, TRNASEC, SEPSECS, PROTEIN-RNA COMPLEX, ALTERNATIVE SPLICING, CYTOPLASM, PROTEIN BIOSYNTHESIS, PYRIDOXAL PHOSPHATE, SELENIUM, TRANSFERASE 2.81 HOMO SAPIENS 1EJZ SOLUTION STRUCTURE OF A HNA-RNA HYBRID SOLUTION NMR 10-23-00 E.LESCRNIER,R.ESNOUF,H.A.HEUS,C.W.HILBERS,P.HERDEWIJN HNA-RNA COMPLEX, DOUBLE HELIX, A-TYPE CONFORMATION synthetic 1Q9A CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E.COLI 23S RRNA AT 1.04 RESOLUTION X-RAY DIFFRACTION 11-25-03 C.C.CORRELL,J.BENEKEN,M.J.PLANTINGA,M.LUBBERS,Y.L.CHAN SARCIN/RICIN DOMAIN, RIBONUCLEIC ACID, RNA RECOGNITION, HIGH RESOLUTION, RIBOSOMES 1.04 synthetic 3R9W CRYSTAL STRUCTURE OF ERA IN COMPLEX WITH MGGDPNP AND NUCLEOTIDES 1506- 1542 OF 16S RIBOSOMAL RNA X-RAY DIFFRACTION 6-22-11 C.TU,X.JI GTPASE, KH DOMAIN, RIBOSOME, BIOGENESIS, GTP, 16S RIBOSOMAL RNA, GTP HYDROLYSIS, HYDROLASE-RNA COMPLEX 2.05 synthetic 2UXC CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA UCGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. X-RAY DIFFRACTION 5-08-07 C.M.DUNHAM,M.SELMER,S.S.PHELPS,A.C.KELLEY,T.SUZUKI,S.JOSEPH, V.RAMAKRISHNAN RIBOSOME, RIBONUCLEOPROTEIN, 30S RIBOSOMAL SUBUNIT, FRAMESHIFT SUPPRESSOR TRNA, TRNA, ZINC, MRNA, CODON, A SITE, DECODING, METAL-BINDING, MESSENGER RNA, RIBOSOMAL PROTEIN, RNA-BINDING, COILED COIL, PAROMOMYCIN, RNA- BINDING, ANTICODON, STEM-LOOP, FRAMESHIFT, ZINC-FINGER, RRNA-BINDING, TRNA-BINDING, TRANSFER RNA 2.9 THERMUS THERMOPHILUS,synthetic,synthetic 2G3S RNA STRUCTURE CONTAINING GU BASE PAIRS X-RAY DIFFRACTION 1-16-07 S.B.JANG,L.W.HUNG,M.S.JEONG,E.L.HOLBROOK,X.CHEN,D.H.TURNER, S.R.HOLBROOK RNA CRYSTAL STRUCTURE, TANDEM GU BASE PAIRS 1.50 synthetic 2IZM MS2-RNA HAIRPIN (C-10) COMPLEX X-RAY DIFFRACTION 7-03-07 C.HELGSTRAND,E.GRAHN,T.MOSS,N.J.STONEHOUSE,K.TARS, P.G.STOCKLEY,L.LILJAS VIRUS/RNA, VIRUS/VIRAL PROTEIN/RNA, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), VIRION PROTEIN, CAPSID PROTEIN, STRUCTURAL PROTEIN, CAPSID, HAIRPIN, LEVIVIRUS, RNA-BINDING 2.70 BACTERIOPHAGE MS2 3IQN FREE-STATE STRUCTURAL TRANSITIONS OF THE SAM-I RIBOSWITCH X-RAY DIFFRACTION 8-04-10 R.K.MONTANGE,R.T.BATEY RIBOSWITCH, SAM, KINK-TURN, PSUEDOKNOT, RNA 2.70 synthetic 1LU3 SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME ELECTRON MICROSCOPY 6-26-02 M.VALLE,J.SENGUPTA,N.K.SWAMI,R.A.GRASSUCCI,N.BURKHARDT, K.H.NIERHAUS,R.K.AGRAWAL,J.FRANK TRNA, TERNARY COMPLEX, CRYO-EM, 70S E.COLI RIBOSOME, CONFORMATIONAL CHANGE 16.80 SACCHAROMYCES CEREVISIAE 3EPL CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM X-RAY DIFFRACTION 11-04-08 R.H.HUANG,C.ZHOU TRANSFERASE, ALTERNATIVE INITIATION, ATP-BINDING, CYTOPLASM, MITOCHONDRION, NUCLEOTIDE-BINDING, NUCLEUS, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX 3.60 synthetic,synthetic 1VC0 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN IMIDAZOLE AND SR2+ SOLUTION X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 2.50 synthetic 2LC8 SOLUTION STRUCTURE OF THE MLV READTHROUGH PSEUDOKNOT SOLUTION NMR 11-23-11 B.HOUCK-LOOMIS,M.A.DURNEY PSEUDOKNOT, FRAMESHIFT, RNA MOLONEY MURINE LEUKEMIA VIRUS 1XNR CRYSTAL STRUCTURE OF AN INOSINE-CYTOSINE WOBBLE BASE PAIR IN THE CONTEXT OF THE DECODING CENTER X-RAY DIFFRACTION 12-14-04 F.V.MURPHY,V.RAMAKRISHNAN RIBOSOME, TRANSLATION, DECODING, 30S, TRNA MODIFICATION 3.10 THERMUS THERMOPHILUS,synthetic,synthetic 3U4M CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TTHL1 IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 8-08-12 A.G.GABDULKHAKOV,N.A.NEVSKAYA,S.V.NIKONOV ROSSMANN FOLD, RIBOSOMAL PROTEIN, RRNA, RRNA BINDING, RIBOSOME, RNA- RNA BINDING PROTEIN COMPLEX 2.00 THERMUS THERMOPHILUS 1ZZ5 MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE X-RAY DIFFRACTION 9-20-05 Q.ZHAO,F.ZHAO,K.F.BLOUNT,Q.HAN,Y.TOR,T.HERMANN RIBOSOME, RNA, A-SITE. DOUBLE HELIX, RESTRICTED NEOMYCIN, CYCLICNEO, NEOCYCLIC 3.00 synthetic,synthetic 3HJF CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE E546 MUTANT PROTEIN COMPLEXED WITH DNA GUIDE STRAND AND 15-NT RNA TARGET STRAND X-RAY DIFFRACTION 10-06-09 Y.WANG,H.LI,G.SHENG,D.J.PATEL ARGONAUTE, PROTEIN-DNA_RNA COMPLEX, PLASMID, NUCLEIC ACID BINDING PROTEIN/DNA/RNA COMPLEX 3.06 synthetic 4KJA CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME, RIBOSOME- ANTIBIOTIC COMPLEX 2.90 ESCHERICHIA COLI 1KH6 CRYSTAL STRUCTURE OF AN RNA TERTIARY DOMAIN ESSENTIAL TO HCV IRES-MEDIATED TRANSLATION INITIATION. X-RAY DIFFRACTION 4-26-02 J.S.KIEFT,K.ZHOU,A.GRECH,R JUBIN,J.A.DOUDNA TRANSLATION, RNA STRUCTURE, IRES, HCV, BROMINE, FOUR-WAY JUNCTION 2.90 synthetic 4DV2 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, C912A X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME 3.65 THERMUS THERMOPHILUS 3T3O MOLECULAR BASIS FOR THE RECOGNITION AND CLEAVAGE OF RNA (CUGG) BY THE BIFUNCTIONAL 5'-3' EXO/ENDORIBONUCLEASE RNASE J X-RAY DIFFRACTION 10-19-11 A.DORLEANS,I.LI DE LA SIERRA-GALLAY,J.PITON,L.ZIG,L.GILET,H.PUTZER, C.CONDON PROTEIN-RNA COMPLEX, METALLO-BETA-LACTAMASE, RNASE J, ENDORIBONUCLEASE, 5'-3' EXORIBONUCLEASE, METAL DEPENDENT HYDROLASE, RNA, HYDROLASE, HYDROLASE-RNA COMPLEX 2.50 synthetic 1UTD THE STRUCTURE OF THE TRP RAN-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A 63-NUCLEOTIDE RNA MOLECULE CONTAINING GAGUUU REPEATS X-RAY DIFFRACTION 1-15-04 N.H.HOPCROFT,A.MANFREDO,A.L.WENDT,A.M.BRZOZOWSKI,P.GOLLNICK, A.A.ANTSON RNA BINDING PROTEIN, TRANSCRIPTION REGULATION, RNA-BINDING, TRP RNA TRANSCRIPTION ATTENUATION, RNA-BINDING PROTEIN, 2.1 BACILLUS STEAROTHERMOPHILUS 3SUX CRYSTAL STRUCTURE OF THF RIBOSWITCH, BOUND WITH THF X-RAY DIFFRACTION 9-14-11 L.HUANG,A.SERGANOV,D.J.PATEL THREE-WAY JUNCTION, PSEUDOKNOT, GENE REGULATOR, THF, RNA 2.90 synthetic 2KBP SOLUTION STRUCTURE OF A G-QUADRUPLEX OF HUMAN TELOMERIC RNA SOLUTION NMR 3-24-09 A.T.PHAN,H.MARTADINATA G-QUADRUPLEX, PARALLEL FORM, RNA, TELOMERIC synthetic 2VOP CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER AUUUU X-RAY DIFFRACTION 5-06-08 O.KOTIK-KOGAN,E.R.VALENTINE,D.SANFELICE,M.R.CONTE,S.CURRY RNA-BINDING PROTEIN, RNA RECOGNITION MOTIF, SYSTEMIC LUPUS ERYTHEMATOSUS, PHOSPHOPROTEIN, RNA MATURATION, RNA BINDING PROTEIN, NUCLEUS, LA MOTIF, RNA-BINDING, POLYMORPHISM 2.8 HOMO SAPIENS 2G4B STRUCTURE OF U2AF65 VARIANT WITH POLYURIDINE TRACT X-RAY DIFFRACTION 7-25-06 E.A.SICKMIER,C.L.KIELKOPF PROTEIN-RNA COMPLEX, RNA SPLICING FACTOR, RNA RECOGNITION MOTIF, RNA BINDING PROTEIN/RNA COMPLEX 2.50 synthetic 4G6R MINIMAL HAIRPIN RIBOZYME IN THE TRANSITION STATE WITH G8I VARIATION X-RAY DIFFRACTION 8-15-12 J.A.LIBERMAN,J.L.JENKINS,J.KRUCINSKA,J.E.WEDEKIND RNA, STRUCTURE-ACTIVITY RELATIONSHIP, NUCLEIC ACID CONFORMATION 2.83 synthetic,synthetic,synthetic,synthetic 1QWB NMR STRUCUTRE OF 5'-R(GGACACGAAAUCCCGAAGUAGUGUCC)-3' : AN RNA HAIRPIN CONTAINING THE IN VITRO SELECTED CONSENSUS SEQUENCE FOR NUCLEOLIN RBD12 SOLUTION NMR 11-25-03 L.D.FINGER,L.TRANTIREK,C.JOHANSSON,J.FEIGON A-FORM HELIX, LOOP E MOTIF, S-TURN, DISORDERED HAIRPIN LOOP, RNA synthetic 4FY9 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 2PN3 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS IRES SUBDOMAIN IIA X-RAY DIFFRACTION 4-01-08 Q.ZHAO,Q.HAN,C.R.KISSINGER,T.HERMANN,P.A.THOMPSON HCV, IRES, LOOP IIA, RNA, MAGNESIUM, CRYSTALLIZATION, CRYSTAL STRUCTURE 2.90 synthetic,synthetic 397D A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS- ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION- DEPENDENT BULGE CONFORMATION X-RAY DIFFRACTION 9-11-98 J.A.IPPOLITO,T.A.STEITZ DOUBLE HELIX, OVERHANGING BASES, RNA 1.30 synthetic,synthetic 3QGC CRYSTAL STRUCTURE OF FBF-2 R288Y MUTANT IN COMPLEX WITH GLD-1 FBEA A7U MUTANT X-RAY DIFFRACTION 3-23-11 Y.WANG,C.QIU,Y.Y.KOH,L.OPPERMAN,L.GROSS,T.M.T.HALL,M.WICKENS FBF, FEM-3 BINDING FACTOR, PUF, RNA-BINDING SPECIFICITY, BASE STACKING, RNA BINDING PROTEIN-RNA COMPLEX 1.90 synthetic 4BKK THE RESPIRATORY SYNCYTIAL VIRUS NUCLEOPROTEIN-RNA COMPLEX FORMS A LEFT-HANDED HELICAL NUCLEOCAPSID. ELECTRON MICROSCOPY 10-30-13 S.E.BAKKER,S.DUQUERROY,M.GALLOUX,C.LONEY,E.CONNER,J.F.ELEOUET, F.A.REY,D.BHELLA VIRAL PROTEIN-RNA COMPLEX synthetic 3I5Y STRUCTURE OF MSS116P BOUND TO SSRNA CONTAINING A SINGLE 5- BRU AND AMP-PNP X-RAY DIFFRACTION 9-08-09 M.DEL CAMPO,A.M.LAMBOWITZ PROTEIN-RNA COMPLEX, RNA HELICASE, DEAD-BOX, ATP-BINDING, HELICASE, HYDROLASE, MITOCHONDRION, MRNA PROCESSING, MRNA SPLICING, NUCLEOTIDE-BINDING, RNA-BINDING, TRANSIT PEPTIDE, TRANSLATION REGULATION, HYDROLASE/RNA COMPLEX 2.49 synthetic 4A19 T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 26S RRNA AND PROTEINS OF MOLECULE 2. X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA 2QBE CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH RRF BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI 2LB4 DNA / RNA HYBRID CONTAINING A CENTRAL STEREO SPECIFIC SP BORANO PHOSPHATE LINKAGE SOLUTION NMR 6-29-11 C.N.JOHNSON,A.M.SPRING,B.R.SHAW,M.W.GERMANN NUCLEIC ACID HETERODUPLEX, RNASE H1 ACTIVITY, DNA-RNA COMPLEX synthetic 4K0M CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 70S CONTAINING TRNAS AND MRNA STOP CODON WITH PSEUDOURIDINE X-RAY DIFFRACTION 7-03-13 I.S.FERNANDEZ,C.L.NG,A.C.KELLEY,W.GUOWEI,Y.T.YU,V.RAMAKRISHNAN RIBOSOMAL SUBUNIT, TRANSLATION, RIBOSOME 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2Y0V THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1G59 GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU). X-RAY DIFFRACTION 9-01-01 S.SEKINE,O.NUREKI,A.SHIMADA,D.G.VASSYLYEV,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) AMINOACYL-TRNA SYNTHETASE, PROTEIN-RNA COMPLEX, TRANSFER RNA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 2.40 synthetic 3E1D STRUCTURE OF THE 50S SUBUNIT OF E. COLI RIBOSOME IN POST- ACCOMMODATION STATE ELECTRON MICROSCOPY 8-18-09 B.DEVKOTA,T.R.CAULFIELD,R.-Z.TAN,S.C.HARVEY RIBOSOME, TRANSLATION, ACCOMMODATION, TRNA SELECTION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, TRNA-BINDING, PHOSPHOPROTEIN, ANTIBIOTIC RESISTANCE, METAL-BINDING, ZINC, REPRESSOR, TRANSLATION REGULATION 9.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3IBK CRYSTAL STRUCTURE OF A TELOMERIC RNA QUADRUPLEX X-RAY DIFFRACTION 5-12-10 G.W.COLLIE,S.NEIDLE,G.N.PARKINSON RNA QUADRUPLEX, BIMOLECULAR QUADRUPLEX, PARALLEL STRANDED, RNA 2.20 synthetic 4G7O CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INITIATION COMPLEX CONTAINING 2 NT OF RNA X-RAY DIFFRACTION 10-31-12 Y.ZHANG,R.H.EBRIGHT PROTEIN-DNA COMPLEX, TRANSCRIPTION INITIATION COMPLEX, RNAP-PROMOTER COMPLEX, RNAP-PROMOTER OPEN COMPLEX, OPEN COMPLEX, RPO, RNA POLYMERASE, TRANSCRIPTION INITIATION, TRANSCRIPTION INITIATION FACTOR SIGMA A, PROMOTER DNA, NUCLEOID, TRANSCRIPTION, TRANSFERASE- DNA COMPLEX 2.99 synthetic 3PKM CRYSTAL STRUCTURE OF CAS6 WITH ITS SUBSTRATE RNA X-RAY DIFFRACTION 3-09-11 R.WANG,G.PREAMPLUME,H.LI CAS6, CRISPR, ENDONUCLEASE, FERRIDOXIN FOLD, CRISPR PROCESSING ENDONUCLEASE, REPEAT RNA, HYDROLASE-RNA COMPLEX 3.10 synthetic,synthetic 3CCS STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482A X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL G2482A MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, RIBOSOME 2.95 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 4JI5 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING, RIBOSOME-ANTIBIOTIC COMPLEX 3.85 THERMUS THERMOPHILUS 2JA6 CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX B X-RAY DIFFRACTION 2-20-07 F.BRUECKNER,U.HENNECKE,T.CARELL,P.CRAMER DNA-DIRECTED RNA POLYMERASE, LESION RECOGNITION, TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING, PHOTOLESION, PHOSPHORYLATION, MISINCORPORATION, RNA POLYMERASE II, TRANSCRIPTION- COUPLED REPAIR, TCR, CPD, ZINC, ARREST, STALLING, DNA LESION, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, NUCLEOTIDYLTRANSFERASE, DAMAGE RECOGNITION, ELONGATION COMPLEX, TRANSFERASE, THYMINE DIMER, TRANSCRIPTION, CYCLOBUTANE PYRIMIDINE DIMER 4.0 synthetic 4ARI TERNARY COMPLEX OF E. COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND THE BENZOXABOROLE AN2679 IN THE EDITING CONFORMATION X-RAY DIFFRACTION 6-13-12 A.PALENCIA,T.CREPIN,M.T.VU,T.L.LINCECUM JR,S.A.MARTINIS,S.CUSACK LIGASE-RNA COMPLEX, LIGASE, NUCLEOTIDE(ATP)-BINDING, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE 2.08 ESCHERICHIA COLI 4DH9 CRYSTAL STRUCTURE OF YAEJ BOUND TO THE 70S RIBOSOME X-RAY DIFFRACTION 3-28-12 M.G.GAGNON,S.V.SEETHARAMAN,D.P.BULKLEY,T.A.STEITZ RIBOSOME, YAEJ, RIBOSOME STALLING, RIBOSOME RESCUE, RESCUE FACTOR, ALTERNATIVE RESCUE FACTOR, ARFB, RELEASE FACTOR, RESCUE OF STALLED RIBOSOMES 3.20 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic 3PGW CRYSTAL STRUCTURE OF HUMAN U1 SNRNP X-RAY DIFFRACTION 12-29-10 G.WEBER,S.TROWITZSCH,B.KASTNER,R.LUEHRMANN,M.C.WAHL PROTEIN-RNA COMPLEX, U1 SNRNA, SM FOLD, SM CORE, RRM, SPLICING, MRNA, SNRNPS, SPLICING FACTORS, SPLICING-DNA-RNA COMPLEX 4.40 HOMO SAPIENS 1N77 CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU) AND ATP. X-RAY DIFFRACTION 2-25-03 S.SEKINE,O.NUREKI,D.Y.DUBOIS,S.BERNIER,R.CHENEVERT, J.LAPOINTE,D.G.VASSYLYEV,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) ERS/TRNA/ATP, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 2.40 synthetic 4KCZ S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-I CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE.THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT A. THE 30S SUBUNIT A CAN BE FOUND IN 4KCY. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KD0 (30S) AND 4KD2 (50S).G1 50S RIBOSOMAL SUBUNIT I X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3I1R CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, ACETYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN 3.81 ESCHERICHIA COLI K-12,ESCHERICHIA COLI K-12 2LA5 RNA DUPLEX-QUADRUPLEX JUNCTION COMPLEX WITH FMRP RGG PEPTIDE SOLUTION NMR 6-08-11 A.PHAN,V.KURYAVYI,J.DARNELL,A.SERGANOV,A.MAJUMDAR,S.ILIN,R.DARNELL, D.PATEL RNA BINDING PROTEIN-RNA COMPLEX synthetic 2RN1 LIQUID CRYSTAL SOLUTION STRUCTURE OF THE KISSING COMPLEX FORMED BY THE APICAL LOOP OF THE HIV TAR RNA AND A HIGH AFFINITY RNA APTAMER OPTIMIZED BY SELEX SOLUTION NMR 9-23-08 H.VAN MELCKEBEKE,M.DEVANY,C.DI PRIMO,F.BEAURAIN,J.TOULME, D.L.BRYCE,J.BOISBOUVIER RNA KISSING COMPLEX, HIV TAR, HIGH AFFINITY RNA APTAMER SELECTED BY SELEX, LIQUID CRYSTAL NMR, GA BASE PAIR synthetic,synthetic 3IEV CRYSTAL STRUCTURE OF ERA IN COMPLEX WITH MGGNP AND THE 3' END OF 16S RRNA X-RAY DIFFRACTION 8-25-09 C.TU,X.JI ERA, GTPASE, KH DOMAIN, ANTI-SD, 16S RRNA, 30S RIBOSOME ASSEMBLY, GTP-BINDING, NUCLEOTIDE-BINDING, RNA-BINDING, NUCLEOTIDE BINDING PROTEIN/RNA COMPLEX 1.90 synthetic 3KNI THE STRUCTURES OF VIOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I X-RAY DIFFRACTION 2-16-10 R.E.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, VIOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 4A4S UNAC TETRALOOPS: TO WHAT EXTENT CAN THEY MIMIC GNRA TETRALOOPS SOLUTION NMR 5-30-12 Q.ZHAO,H.HUANG,U.NAGASWAMY,Y.XIA,X.GAO,G.FOX RNA, EVOLUTION, UMAC TETRALOOP THERMUS THERMOPHILUS 3NPQ STRUCTURE OF THE S-ADENOSYLHOMOCYSTEINE RIBOSWITCH AT 2.18 A X-RAY DIFFRACTION 10-06-10 F.E.REYES,A.E.EDWARDS,R.T.BATEY RNA, RIBOSWITCH, S-ADENOSYL-HOMOCYSTEINE 2.18 RALSTONIA SOLANACEARUM 3BNR CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE IN THE PRESENCE OF NONSPECIFICALLY BOUND PAROMOMYCIN (A1555G MUTANT, BR-DERIVATIVE) X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 2.10 synthetic,synthetic,synthetic 3OG0 CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CLINDAMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, CLINDAMYCIN, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, RIBOSOME 3.29 ESCHERICHIA COLI,ESCHERICHIA COLI 4KFH CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND WITH THE Q253P MUTANT OF RELEASE FACTOR RF2. 30S OF THE A SUBUNIT X-RAY DIFFRACTION 7-03-13 N.SANTOS,J.ZHU,J.P.DONOHUE,A.A.KOROSTELEV,H.F.NOLLER RIBOSOME, RELEASE FACTOR 2 MUTANT 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1RMN A THREE-DIMENSIONAL MODEL FOR THE HAMMERHEAD RIBOZYME BASED ON FLUORESCENCE MEASUREMENTS FLUORESCENCE TRANSFER 1-26-95 T.TUSCHL,C.GOHLKE,T.M.JOVIN,E.WESTHOF,F.ECKSTEIN RIBONUCLEIC ACID(HAMMERHEAD RIBOZYME) synthetic 2WDL STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN METHYLATION, TRANSLATION, PAROMOMYCIN, TRNA-BINDING, TRNA, ZINC, MRNA, RIBOSOME, REPRESSOR, RNA-BINDING, RIBONUCLEOPROTEIN, TRANSLATION REGULATION, RRNA-BINDING, METAL-BINDING, RIBOSOMAL PROTEIN 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1H2D EBOLA VIRUS MATRIX PROTEIN VP40 N-TERMINAL DOMAIN IN COMPLEX WITH RNA (LOW-RESOLUTION VP40[31-212] VARIANT). X-RAY DIFFRACTION 4-10-03 F.X.GOMIS-RUTH,A.DESSEN,A.BRACHER,H.D.KLENK,W.WEISSENHORN VIRUS/VIRAL PROTEIN, FILOVIRUS, EBOLA VIRUS, MATRIX PROTEIN VP40, ASSEMBLY, BUDDING 2.6 ESCHERICHIA COLI 1MDG AN ALTERNATING ANTIPARALLEL OCTAPLEX IN AN RNA CRYSTAL STRUCTURE X-RAY DIFFRACTION 8-12-03 B.C.PAN,Y.XIONG,K.SHI,M.SUNDARALINGAM TETRAPLEX, BASE TETRADS, BASE OCTADS, RNA 1.50 synthetic 1R3E CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUB AND ITS RNA COMPLEX: RNA-PROTEIN RECOGNITION THROUGH A COMBINATION OF RIGID DOCKING AND INDUCED FIT X-RAY DIFFRACTION 11-04-03 H.PAN,S.AGARWALLA,D.T.MOUSTAKAS,J.FINER-MOORE,R.M.STROUD RNA MODIFICATION, PSEUDOURIDYLATION, LYASE/RNA COMPLEX 2.10 synthetic,synthetic 1YL3 CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS. LARGE SUBUNIT. THE COORDINATES FOR THE SMALL SUBUNIT ARE IN THE PDB ENTRY 1YL4. X-RAY DIFFRACTION 4-12-05 L.JENNER,P.ROMBY,B.REES,C.SCHULZE-BRIESE,M.SPRINGER, C.EHRESMANN,B.EHRESMANN,D.MORAS,G.YUSUPOVA,M.YUSUPOV RIBOSOME, MRNA, TRANSLATIONAL OPERATOR 5.50 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3MJ0 CRYSTAL STRUCTURE OF DROSOPHIA AGO-PAZ DOMAIN IN COMPLEX WITH 3'-END 2'-O-METHYLATED RNA X-RAY DIFFRACTION 5-25-11 Y.HUANG,L.DING,J.MA ARGONAUT, PAZ DOMAIN, 3'-END 2'-O-METHYLATED SSRNA, RNA-RNA BINDING PROTEIN COMPLEX 2.31 synthetic 3IY8 LEISHMANIA TARENTOLAE MITONCHONDRIAL RIBOSOME SMALL SUBUNIT ELECTRON MICROSCOPY 7-07-09 M.R.SHARMA,T.M.BOOTH,L.SIMPSON,D.A.MASLOV,R.K.AGRAWAL LEISHMANIA TARENTOLAE, MITOCHONDRIAL RIBOSOME, CRYOEM, MINIMAL RNA., ACETYLATION, ANTIBIOTIC RESISTANCE, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, REPRESSOR, TRANSLATION REGULATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE 14.10 LEISHMANIA TARENTOLAE 2K4C TRNAPHE-BASED HOMOLOGY MODEL FOR TRNAVAL REFINED AGAINST BASE N-H RDCS IN TWO MEDIA AND SAXS DATA SOLUTION NMR; SOLUTION SCATTERING 12-09-08 A.GRISHAEV,J.YING,M.D.CANNY,A.PARDI,A.BAX TRNAVAL, RDC, SAXS, NCS ESCHERICHIA COLI 3SD1 THE STRUCTURE OF A TETRAHYDROFOLATE RIBOSWITCH X-RAY DIFFRACTION 9-21-11 F.E.REYES,J.J.TRAUSCH,P.CERES,R.T.BATEY TETRAHYDROFOLATE RNA RIBOSWITCH, RNA 2.27 synthetic 1JBS CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN AND A 29-MER SRD RNA ANALOG X-RAY DIFFRACTION 10-26-01 X.YANG,T.GERCZEI,L.GLOVER,C.C.CORRELL RIBOTOXIN, HIGHLY SPECIFIC RIBONUCLEASE, PROTEIN-RNA COMPLEX, RIBONUCLEASE T1, , HYDROLASE/RNA COMPLEX 1.97 synthetic 4B3P STRUCTURES OF HIV-1 RT AND RNA-DNA COMPLEX REVEAL A UNIQUE RT CONFORMATION AND SUBSTRATE INTERFACE X-RAY DIFFRACTION 1-16-13 M.LAPKOUSKI,L.TIAN,J.T.MILLER,S.F.J.LE GRICE,W.YANG HYDROLASE-RNA-DNA COMPLEX, RNASE H, SUBUNIT INTERFACE, HYBRID 4.84 SYNTHETIC CONSTRUCT 1U1Y CRYSTAL STRUCTURE OF A COMPLEX BETWEEN WT BACTERIOPHAGE MS2 COAT PROTEIN AND AN F5 APTAMER RNA STEMLOOP WITH 2AMINOPURINE SUBSTITUTED AT THE-10 POSITION X-RAY DIFFRACTION 12-07-04 W.T.HORN,M.A.CONVERY,N.J.STONEHOUSE,C.J.ADAMS,L.LILJAS, S.E.PHILLIPS,P.G.STOCKLEY COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, CAPSID, LEVIVIRUS, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.85 ENTEROBACTERIO PHAGE MS2 176D NMR SOLUTION STRUCTURE OF A PEPTIDE NUCLEIC ACID COMPLEXED WITH RNA SOLUTION NMR 11-01-94 S.C.BROWN,J.M.VEAL RNA, PNA, NMR, DOUBLE HELIX, PEPTIDE NUCLEIC ACID/RNA COMPLEX synthetic 1TBK NMR STRUCTURE OF THE VS RIBOZYME STEM-LOOP V RNA IN THE ABSENCE OF MULTIVALENT IONS. SOLUTION NMR 3-01-05 D.O.CAMPBELL,P.LEGAULT U-TURN; HAIRPIN, RNA synthetic 2KGP STRUCTURAL BASIS FOR STABILIZATION OF THE TAU PRE-MRNA SPLICING REGULATORY ELEMENT BY NOVANTRONE (MITOXANTRONE) SOLUTION NMR 6-02-09 S.ZHENG,Y.CHEN,C.P.DONAHUE,M.S.WOLFE,G.VARANI TAU PRE-MRNA, SPLICING REGULATORY ELEMENT, NMR, MITOXANTRONE, NOVANTRONE, RNA-SMALL MOLECULE, TAUOPATHIES synthetic 1EKD NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 SOLUTION NMR 11-13-00 X.CHEN,J.A.MCDOWELL,R.KIERZEK,T.R.KRUGH,D.H.TURNER RNA, GU PAIR, HYDROGEN BOND, DOUBLE HELIX synthetic 3S1Q RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT 3'-DEOXY RNA SOAKED WITH ATP X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.30 synthetic 2HVY CRYSTAL STRUCTURE OF AN H/ACA BOX RNP FROM PYROCOCCUS FURIOSUS X-RAY DIFFRACTION 9-12-06 K.YE H/ACA RNA, RNP, PSEUDOURIDINE SYNTHASE, GUIDE RNA, ISOMERASE/BIOSYNTHETIC PROTEIN/RNA COMPLEX 2.30 synthetic 2A9L SOLUTION NMR STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE- TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 6-17-98 J.L.DIENER,P.B.MOORE ARCHAEAL BULGE-HELIX-BULGE MOTIF, PRE-TRNA SPLICING, NMR, ARCHAEA, RNA STRUCTURE, RIBONUCLEIC ACID synthetic 1KNZ RECOGNITION OF THE ROTAVIRUS MRNA 3' CONSENSUS BY AN ASYMMETRIC NSP3 HOMODIMER X-RAY DIFFRACTION 1-17-02 R.C.DEO,C.M.GROFT,K.R.RAJASHANKAR,S.K.BURLEY PROTEIN-SSRNA COMPLEX, VIRAL PROTEIN/RNA COMPLEX 2.45 synthetic 1XPF HIV-1 SUBTYPE A GENOMIC RNA DIMERIZATION INITIATION SITE X-RAY DIFFRACTION 10-18-05 E.ENNIFAR,P.DUMAS RNA, LOOP-LOOP COMPLEX, HIV-1 2.30 synthetic 2D1A SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE EXTENDED-DUPLEX DIMER SOLUTION NMR 11-01-05 S.BABA,K.TAKAHASHI,S.NOGUCHI,H.TAKAKU,Y.KOYANAGI,N.YAMAMOTO, G.KAWAI DIS, HIV-1, RNA, STRUCTURE, NMR synthetic 2JSE NMR REVEALS ABSENCE OF HYDROGEN BONDING IN ADJACENT UU AND AG MISMATCHES IN AN ISOLATED INTERNAL LOOP FROM RIBOSOMAL RNA. SOLUTION NMR 11-20-07 N.SHANKAR NMR STRUCTURE OF RNA LOOP 5' GUGG 3' / 3' CUAC 5', G BASE FLIPPED OUT, 2X2 THERMODYNAMICS, LACK OF HYDROGEN BONDING, ABSENCE OF HYDROGEN BONDING, UU INTERNAL LOOP, UU/AG INTERNAL LOOP, AG INTERNAL LOOP, INTERNAL LOOP FROM PROTEIN L11 BINDING SITE synthetic 4FEN CRYSTAL STRUCTURE OF THE A24U/U25A/A46G MUTANT XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN IN COMPLEX WITH HYPOXANTHINE X-RAY DIFFRACTION 2-27-13 C.D.STODDARD,J.J.TRAUSCH,J.WIDMANN,J.MARCANO,R.KNIGHT,R.T.BATEY THREE-WAY JUNCTION WITH DISTAL TERTIARY INTERACTION, GENETIC REGULATORY ELEMENT, RNA 1.35 synthetic 1PJY SOLUTION STRUCTURE OF THE HIV-1 FRAMESHIFT INDUCING STEM- LOOP RNA SOLUTION NMR 8-05-03 D.W.STAPLE,S.E.BUTCHER NMR, FRAMESHIFT, HIV, TETRALOOP, RNA STRUCTURE synthetic 3BNN CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 2.00 synthetic 4A18 T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 26S RRNA AND PROTEINS OF MOLECULE 1 X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA 3B4C T. TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSAMINE-6- PHOSPHATE AND A SUBSTRATE RNA WITH A 2'5'-PHOSPHODIESTER LINKAGE X-RAY DIFFRACTION 12-11-07 D.J.KLEIN,A.R.FERRE-D'AMARE RIBOZYME, RIBOSWITCH, GLUCOSAMINE-6-PHOSPHATE, RNA 3.00 THERMOANAEROBACTER TENGCONGENSIS,THERMOANAEROBACTER TENGCONGENSIS 3KIX STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (POSTCLEAVAGE STATE; PART 3 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,K.R.ANDERSEN,C.M.DUNHAM,A.C.KELLEY, J.HENTSCHEL,K.GERDES,V.RAMAKRISHNAN,D.E.BRODERSEN RIBOSOME, TRANSLATIONAL CONTROL, RELBE, TOXIN-ANTITOXIN, ENDONUCLEASE, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, REPRESSOR, STRESS RESPONSE, TOXIN, TRANSLATION, TRANSLATION REGULATION 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic 1K4B STRUCTURE OF AGUU RNA TETRALOOP, NMR, 20 STRUCTURES SOLUTION NMR 12-19-01 H.WU,P.K.YANG,S.E.BUTCHER,S.KANG,G.CHANFREAU,J.FEIGON RIBONUCLEIC ACID, TETRALOOP, RNA synthetic 2L1V SOLUTION STRUCTURE OF A PREQ1 RIBOSWITCH (CLASS I) APTAMER BOUND TO PREQ1 SOLUTION NMR 9-01-10 M.KANG,Q.ZHANG,J.FEIGON PREQ1, RIBOSWITCH, RNA, APTAMER, PSEUDOKNOT synthetic 1YHQ CRYSTAL STRUCTURE OF AZITHROMYCIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-26-05 D.TU,G.BLAHA,P.B.MOORE,T.A.STEITZ AZITHROMYCIN, ANTIBIOTIC COMPLEXES, MUTATED 50S SUBUNITS, RIBOSOME 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1FYP EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX SOLUTION NMR 3-14-01 S.R.LYNCH,J.D.PUGLISI RNA-PAROMOMYCIN COMPLEX, AMINOGLYCOSIDE, STEM-INTERNAL LOOP- STEM-TETRALOOP, RNA-DRUG, G-A BASE PAIR synthetic 3NNC CRYSTAL STRUCTURE OF CUGBP1 RRM1/2-RNA COMPLEX X-RAY DIFFRACTION 10-27-10 M.TEPLOVA,J.SONG,H.GAW,A TEPLOV,D.J.PATEL RRM, PRE-MRNA SPLICING, RNA, RNA BINDING PROTEIN-RNA COMPLEX 2.20 HOMO SAPIENS 3BSN NORWALK VIRUS POLYMERASE BOUND TO 5-NITROCYTIDINE TRIPHOSPHATE AND PRIMER-TEMPLATE RNA X-RAY DIFFRACTION 1-08-08 D.F.ZAMYATKIN,K.K.S.NG RNA-DEPENDENT RNA POLYMERASE, VIRAL REPLICATION, ANTIVIRAL ENZYME INHIBITOR, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPLICATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE, TRANSFERASE/RNA COMPLEX 1.80 synthetic,synthetic 3ERC CRYSTAL STRUCTURE OF THE HETERODIMERIC VACCINIA VIRUS MRNA POLYADENYLATE POLYMERASE WITH THREE FRAGMENTS OF RNA AND 3'-DEOXY ATP X-RAY DIFFRACTION 6-16-09 C.LI,H LI,S.ZHOU,T.L.POULOS,P.D.GERSHON POLYADENYLATE POLYMERASE, TRANSLOCATION, SINGLE TRANDED RNA POLY(A) POLYMERASE, RNA PROTEIN COMPLEX, PROCESSIVITY, HETERODIMER, NUCLEOTIDYLTRANSFERASE, POXVIRUS; METHYLTRANSFERASE, MRNA CAPPING, MRNA PROCESSING, S- ADENOSYL-L-METHIONINE, TRANSCRIPTION, TRANSFERASE, TRANSFERASE/DNA, RNA COMPLEX 3.21 synthetic,synthetic,synthetic 6MSF F6 APTAMER MS2 COAT PROTEIN COMPLEX X-RAY DIFFRACTION 7-08-98 M.A.CONVERY,S.ROWSELL,N.J.STONEHOUSE,A.D.ELLINGTON,I.HIRAO, J.B.MURRAY,D.S.PEABODY,S.E.V.PHILLIPS,P.G.STOCKLEY VIRAL COAT PROTEIN/RNA COMPLEX, RNA APTAMER, RNA STEM LOOP, BACTERIOPHAGE MS2, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.80 ENTEROBACTERIO PHAGE MS2,synthetic 3MQK CBF5-NOP10-GAR1 COMPLEX BINDING WITH 17MER RNA CONTAINING ACA TRINUCLEOTIDE X-RAY DIFFRACTION 12-29-10 J.ZHOU,B.LIANG,H.LI PROTEIN-RNA COMPLEX, BOX H/ACA, PSEUDOURIDINE SYNTHASE, POST- TRANSCRIPTIONAL MODIFICATION, ISOMERASE, TRNA PROCESSING, RNA- BINDING, ISOMERASE-RNA BINDING PROTEIN-RNA COMPLEX 2.80 synthetic,synthetic 2O45 STRUCTURE OF THE 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE RU-69874 X-RAY DIFFRACTION 12-04-07 D.BARAM,E.PYETAN,T.AUERBACH-NEVO,A.YONATH RIBOSOME, MACROLIDES,TUNNEL, RNA 3.60 DEINOCOCCUS RADIODURANS 1VQ6 THE STRUCTURE OF C-HPMN AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic,synthetic 1DV4 PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 2-02-00 A.TOCILJ,F.SCHLUNZEN,D.JANELL,M.GLUHMANN,H.HANSEN,J.HARMS, A.BASHAN,H.BARTELS,I.AGMON,F.FRANCESCHI,A.YONATH RIBOSOMES, 30S, THERMUS THERMOPHILUS, 16S RNA 4.50 THERMUS THERMOPHILUS 2XFM COMPLEX STRUCTURE OF THE MIWI PAZ DOMAIN BOUND TO METHYLATED SINGLE STRANDED RNA SOLUTION NMR 1-26-11 B.SIMON,J.P.KIRKPATRICK,S.ECKHARDT,P.SEHR,M.A.ANDRADE-NAVARRO, R.S.PILLAI,T.CARLOMAGNO RNA-PROTEIN COMPLEX, DIFFERENTIATION, RNA INTERFERENCE synthetic 1N35 LAMBDA3 ELONGATION COMPLEX WITH FOUR PHOSPHODIESTER BOND FORMED X-RAY DIFFRACTION 12-25-02 Y.TAO,D.L.FARSETTA,M.L.NIBERT,S.C.HARRISON RNA POLYMERASE, RIGHT HAND CONFIGURATION, BRACELET, TRANSFERASE/RNA COMPLEX 2.50 synthetic,synthetic 1F7V CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNAARG X-RAY DIFFRACTION 6-27-01 B.DELAGOUTTE,D.MORAS,J.CAVARELLI TRNA-PROTEIN COMPLEX, AMINOACYLATION, ARGINYL-TRNA SYNTHETASE, LIGASE/RNA COMPLEX 2.90 synthetic 1VFG CRYSTAL STRUCTURE OF TRNA NUCLEOTIDYLTRANSFERASE COMPLEXED WITH A PRIMER TRNA AND AN INCOMING ATP ANALOG X-RAY DIFFRACTION 8-10-04 K.TOMITA,S.FUKAI,R.ISHITANI,T.UEDA,N.TAKEUCHI,D.G.VASSYLYEV, O.NUREKI,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) TRANSFERASE, RNA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, TRANSFERASE/RNA COMPLEX 2.80 synthetic 1L2X ATOMIC RESOLUTION CRYSTAL STRUCTURE OF A VIRAL RNA PSEUDOKNOT X-RAY DIFFRACTION 3-22-02 M.EGLI,G.MINASOV,L.SU,A.RICH PSEUDOKNOT, FRAMESHIFTING, ATOMIC RESOLUTION, VIRAL RNA, METAL IONS, FLEXIBILITY 1.25 synthetic 2GVO SOLUTION STRUCTURE OF A PURINE RICH HEXALOOP HAIRPIN BELONGING TO PGY/MDR1 MRNA AND TARGETED BY ANTISENSE OLIGONUCLEOTIDES SOLUTION NMR 5-08-07 F.JOLI,N.BOUCHEMAL,A.LAIGLE,B.HARTMANN,E.HANTZ RNA STRUCTURE, HAIRPIN STRUCTURE, G.U WOBBLE PAIR, HEXALOOP, 13C/15N-LABELED RNA synthetic 2PXF VARIANT 5 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.00 ESCHERICHIA COLI 1YNC NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEMENTARY FACTOR SOLUTION NMR 2-08-05 C.MARIS,J.MASSE,F.H.ALLAIN,A.CHESTER,N.NAVARATNAM RNA EDITING; APOB MRNA; APOBEC1; ACF; NMR STRUCTURE synthetic 3ER9 CRYSTAL STRUCTURE OF THE HETERODIMERIC VACCINIA VIRUS MRNA POLYADENYLATE POLYMERASE COMPLEX WITH UU AND 3'-DEOXY ATP X-RAY DIFFRACTION 6-16-09 C.LI,H LI,S.ZHOU,T.L.POULOS,P.D.GERSHON POLYADENYLATE POLYMERASE, TRANSLOCATION, SINGLE TRANDED RNA POLY(A) POLYMERASE, RNA PROTEIN COMPLEX, PROCESSIVITY, HETERODIMER, NUCLEOTIDYLTRANSFERASE, POXVIRUS; METHYLTRANSFERASE, MRNA CAPPING, MRNA PROCESSING, S- ADENOSYL-L-METHIONINE, TRANSCRIPTION, TRANSFERASE, TRANSFERASE/RNA COMPLEX 2.06 synthetic 430D STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA X-RAY DIFFRACTION 10-07-98 C.C.CORRELL,A.MUNISHKIN,Y-L.CHAN,Z.REN,I.G.WOOL,T.A.STEITZ U-RNA, DOUBLE HELIX, HAIRPIN, BLUNT STEM, TETRALOOP MISMATCHED, BASE TRIPLE, RIBONUCLEIC ACID 2.10 synthetic 2K7E NMR STRUCTURE OF THE HUMAN TRNALYS3 BOUND TO THE HIV GENOME LOOP I SOLUTION NMR 10-07-08 Y.BILBILLE,F.P.A.VENDEIX,R.GUENTHER,A.MALKIEWICZ,X.ARIZA, J.VILARRASA,P.AGRIS RNA, TRNALYS3, PSEUDOURIDINE, HIV, 2-THIOURIDINE, S2U, PSU, MODIFICATIONS synthetic,synthetic 3G8S CRYSTAL STRUCTURE OF THE PRE-CLEAVED BACILLUS ANTHRACIS GLMS RIBOZYME X-RAY DIFFRACTION 11-03-09 S.A.STROBEL,J.C.COCHRANE,S.V.LIPCHOCK,K.D.SMITH CATALYTIC RNA, RNA BINDING PROTEIN/RNA COMPLEX 3.10 synthetic,synthetic 2GIP SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA FROM BRADYRHIZOBIUM JANPONICUM HAVING DELETED G83 SOLUTION NMR 6-20-06 S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS A FORM RNA HELIX synthetic 2J0S THE CRYSTAL STRUCTURE OF THE EXON JUNCTION COMPLEX AT 2.2 A RESOLUTION X-RAY DIFFRACTION 9-06-06 F.BONO,J.EBERT,E.LORENTZEN,E.CONTI MRNA PROCESSING, PHOSPHORYLATION, RRNA PROCESSING, MRNA SPLICING, MRNA TRANSPORT, NUCLEAR PROTEIN, ALTERNATIVE SPLICING, NONSENSE-MEDIATED MRNA DECAY, DEAD-BOX HELICASE, NUCLEOTIDE-BINDING, ATP-BINDING, DNA-BINDING, RNA-BINDING, COILED COIL, EJC, HELICASE, HYDROLASE, TRANSPORT, ACETYLATION 2.21 HOMO SAPIENS 1YYO CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA AT 2.9- ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-22-05 J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI RIBONUCLEASE III, DOUBLE-STRANDED RNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 2.90 synthetic 2ESJ COMPLEX BETWEEN LIVIDOMYCIN A AND THE 16S-RRNA A SITE X-RAY DIFFRACTION 12-20-05 E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.20 synthetic 2QUX PP7 COAT PROTEIN DIMER IN COMPLEX WITH RNA HAIRPIN X-RAY DIFFRACTION 12-18-07 J.A.CHAO BACTERIOPHAGE COAT PROTEIN, RNA-PROTEIN COMPLEX, CAPSID PROTEIN, STRUCTURAL PROTEIN/RNA COMPLEX 2.44 PSEUDOMONAS PHAGE PP7 2GYC STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1143 ELECTRON MICROSCOPY 9-26-06 K.MITRA,J.FRANK SECM; NASCENT CHAIN, SIGNAL TRANSDUCTION, RNA WORLD, POLYPEPTIDE EXIT TUNNEL, TRANSLOCATION, RIBOSOME, ELONGATION ARREST, PROTEIN-CONDUCTING CHANNEL 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI 2J28 MODEL OF E. COLI SRP BOUND TO 70S RNCS ELECTRON MICROSCOPY 11-08-06 M.HALIC,M.BLAU,T.BECKER,T.MIELKE,M.R.POOL,K.WILD,I.SINNING, R.BECKMANN RIBOSOME, PROTEIN/RNA COMPLEX, SIGNAL RECOGNITION PARTICLE 8.0 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1MME THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE X-RAY DIFFRACTION 2-06-96 W.G.SCOTT,J.T.FINCH,A.KLUG RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP 3.10 synthetic,synthetic 2GPM CRYSTAL STRUCTURE OF AN RNA RACEMATE X-RAY DIFFRACTION 6-27-06 W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL,V. A.ERDMANN DOUBLE HELIX, RACEMATE, RNA 1.40 synthetic,synthetic 2UUA STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUC-CODON IN THE A-SITE AND PAROMOMYCIN. X-RAY DIFFRACTION 5-15-07 A.WEIXLBAUMER,F.V.MURPHY,A.DZIERGOWSKA,A.MALKIEWICZ, F.A.P.VENDEIX,P.F.AGRIS,V.RAMAKRISHNAN TRNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC-FINGER, TRANSLATION, COILED COIL, PAROMOMYCIN, TRNA, ZINC, MRNA, CMO5U, RIBOSOME, RNA-BINDING, MODIFIACTIONS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN 2.9 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3FTM CLASS II LIGASE RIBOZYME PRODUCT-TEMPLATE DUPLEX, STRUCTURE 1 X-RAY DIFFRACTION 2-24-09 J.N.PITT,A.R.FERRE-D'AMARE RIBOZYME, LIGASE, 2'-5', 2-5, 2P5, RNA 2.70 synthetic,synthetic 3J50 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE PRE- TRANSLOCATION STATE (PRE2, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 20.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1GIX CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIX, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY X-RAY DIFFRACTION 5-04-01 M.M.YUSUPOV,G.Z.YUSUPOVA,A.BAUCOM,K.LIEBERMAN,T.N.EARNEST, J.H.D.CATE,H.F.NOLLER RIBOSOME ASSEMBLY, PROTEIN SYNTHESIS, LIFE 5.50 THERMUS THERMOPHILUS,synthetic,synthetic,synthetic 1UVI THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 WITH 6NT RNA X-RAY DIFFRACTION 2-19-04 P.S.SALGADO,E.V.MAKEYEV,S.BUTCHER,D.BAMFORD,D.I.STUART, J.M.GRIMES POLYMERASE, POLYMERASE/COMPLEX, RNA-DEPENDENT RNA POLYMERASE COMPLEX WITH 6NT RNA OLIGONUCLEOTIDE, TRANSCRIPTION, STRUCTURAL PROTEIN 2.15 synthetic 2AWQ SOLUTION STRUCTURE OF PSEUDOURIDINE-32 MODIFIED ANTICODON STEM-LOOP OF E. COLI TRNAPHE SOLUTION NMR 1-17-06 J.CABELLO-VILLEGAS,E.P.NIKONOWICZ TRI-LOOP,WATSON-CRICK TYPE PSI32-A38 BASE PAIR, RNA synthetic 1VQM THE STRUCTURE OF THE TRANSITION STATE ANALOGUE "DAN" BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.30 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 2K41 NMR STRUCTURE OF URIDINE BULGED RNA DUPLEX SOLUTION NMR 11-04-08 L.POPENDA,L.BIELECKI,Z.GDANIEC,R.W.ADAMIAK RNA, DUPLEX, URIDINE BULGE, NMR synthetic,synthetic 3J5K E. COLI 70S-FMETVAL-TRNAVAL POST-TRANSLOCATION COMPLEX (POST4, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 9.00 ESCHERICHIA COLI,ESCHERICHIA COLI 2OTL GIRODAZOLE BOUND TO THE LARGE SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-03-07 G.BLAHA,S.J.SCHROEDER,J.TIRADO-RIVES GIRODAZOLE, GIROLLINE, ANTIBIOTIC COMPLEX, 50S, RIBOSOME, LARGE SUBUNIT 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1FFZ LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN X-RAY DIFFRACTION 8-28-00 P.NISSEN,J.HANSEN,N.BAN,P.B.MOORE,T.A.STEITZ RIBOSOME ASSEMBLY, RNA-RNA COMPLEX, RIBOZYME, RIBOSOMAL RNA 3.20 HALOARCULA MARISMORTUI 1KD5 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2 METAL FREE FORM X-RAY DIFFRACTION 3-04-03 V.KACER,S.A.SCARINGE,J.N.SCARSDALE,J.P.RIFE RNA DUPLEX 1.58 synthetic 4BWM KLENTAQ MUTANT IN COMPLEX WITH A RNA/DNA HYBRID X-RAY DIFFRACTION 9-18-13 N.BLATTER,K.BERGEN,W.WELTE,K.DIEDERICHS,A.MARX TRANSFERASE-DNA-RNA COMPLEX 1.75 synthetic 2X9R STRUCTURE OF THE 70S RIBOSOME BOUND TO RELEASE FACTOR 2 AND A SUBSTRATE ANALOG PROVIDES INSIGHTS INTO CATALYSIS OF PEPTIDE RELEASE X-RAY DIFFRACTION 5-12-10 H.JIN,A.C.KELLEY,D.LOAKES,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRNA-BINDING, RRNA-BINDING, METAL-BINDING, RIBOSOME, ZINC-FINGER, TRANSLATION 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 2ZXU CRYSTAL STRUCTURE OF TRNA MODIFICATION ENZYME MIAA IN THE COMPLEX WITH TRNA(PHE) AND DMASPP X-RAY DIFFRACTION 5-26-09 J.SAKAI,M.YAO,S.CHIMNARONK,I.TANAKA PROTEIN-RNA COMPLEX, ATP-BINDING, TRNA MODIFICATION ENZYME, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX 2.75 ESCHERICHIA COLI 2LK3 U2/U6 HELIX I SOLUTION NMR 2-22-12 J.E.BURKE,D.G.SASHITAL,X.E.ZUO,Y.WANG,S.E.BUTCHER BULGE, RNA synthetic 1CSL CRYSTAL STRUCTURE OF THE RRE HIGH AFFINITY SITE X-RAY DIFFRACTION 2-14-00 J.A.IPPOLITO,T.A.STEITZ RRE HIGH AFFINITY SITE, HIV-1, RNA 1.60 synthetic,synthetic 4A3J RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 2NT DNA-RNA HYBRID AND SOAKED WITH GMPCPP X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.70 SYNTHETIC CONSTRUCT 2AZX CHARGED AND UNCHARGED TRNAS ADOPT DISTINCT CONFORMATIONS WHEN COMPLEXED WITH HUMAN TRYPTOPHANYL-TRNA SYNTHETASE X-RAY DIFFRACTION 8-01-06 X.L.YANG,F.J.OTERO,K.L.EWALT,J.LIU,M.A.SWAIRJO,C.KOHRER, U.L.RAJBHANDARY,R.J.SKENE,D.E.MCREE,P.SCHIMMEL TWO SYNTHETASE-TRNA COMPLEX WITH DISTINCT CONFORMATIONS, ASSOCIATION COMPLEX AND DISSOCIATION COMPLEX, LIGASE/RNA COMPLEX 2.80 synthetic 1NYI CROSSLINKED HAMMERHEAD RIBOZYME INITIAL STATE X-RAY DIFFRACTION 2-24-04 C.M.DUNHAM,J.B.MURRAY,W.G.SCOTT HAMMERHEAD RIBOZYME CROSSLINK CONFORMATIONAL CHANGE, RNA 2.85 synthetic,synthetic 2XG0 STRUCTURE OF CYTOTOXIC DOMAIN OF COLICIN E3 BOUND TO THE 70S RIBOSOME (PART 2 OF 4) X-RAY DIFFRACTION 9-22-10 C.L.NG,K.LANG,N.A.G.MEENAN,A.SHARMA,A.C.KELLEY,C.KLEANTHOUS, V.RAMAKRISHNAN RIBOSOME 3.20 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 2B2G MS2 WILD-TYPE RNA STEMLOOP COMPLEXED WITH AN N87S MUTANT MS2 CAPSID X-RAY DIFFRACTION 5-09-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY CAPSID, COMPLEX (CAPSID PROTEIN - RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL, PROTEIN/RNA, VIRUS/VIRAL PROTEIN/RNA COMPLEX 3.02 ENTEROBACTERIO PHAGE MS2 1AV6 VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M7G CAPPED RNA HEXAMER AND S-ADENOSYLHOMOCYSTEINE X-RAY DIFFRACTION 2-25-98 A.E.HODEL,P.D.GERSHON,F.A.QUIOCHO SINGLE-STRANDED RNA, METHYLTRANSFERASE, RNA CAP, POLY(A) POLYMERASE, VACCINIA, MRNA PROCESSING, TRANSCRIPTION, COMPLEX (TRANSFERASE/RNA) 2.80 engineered 2R7U CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (AAAAGCC) COMPLEX X-RAY DIFFRACTION 7-29-08 X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 3.10 SIMIAN ROTAVIRUS 3J0Q CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FITTED TO A 10.6A CRYO-EM MAP: ROTATED PRE STATE 2 ELECTRON MICROSCOPY 11-16-11 T.BUDKEVICH,J.GIESEBRECHT,R.ALTMAN,J.MUNRO,T.MIELKE,K.NIERHAUS, S.BLANCHARD,C.M.SPAHN MAMMALIA, TRANSLATION, ELONGATION CYCLE, TRNA, RIBOSOME 10.60 ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS 2HO7 PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSE-6-PHOSPHATE X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA; RIBOZYME; PSEUDOKNOT; HELIX 2.90 synthetic,synthetic 3EPH CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM X-RAY DIFFRACTION 11-04-08 R.H.HUANG,C.ZHOU TRANSFERASE, ALTERNATIVE INITIATION, ATP-BINDING, CYTOPLASM, MITOCHONDRION, NUCLEOTIDE-BINDING, NUCLEUS, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX 2.95 synthetic 205D STRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE PAIRS IN AN INTERNAL LOOP X-RAY DIFFRACTION 9-15-95 K.J.BAEYENS,H.L.DE BONDT,S.R.HOLBROOK A-RNA, DOUBLE HELIX, INTERNAL LOOP, MISMATCHED 2.64 engineered 1HJI BACTERIOPHAGE HK022 NUN-PROTEIN-NUTBOXB-RNA COMPLEX SOLUTION NMR 1-29-02 C.FABER,M.SCHAERPF,T.BECKER,H.STICHT,P.ROESCH BACTERIOPHAGE HK022, TERMINATION, PEPTIDE-RNA-COMPLEX, PEPTIDE-RNA-RECOGNITION, PROTEIN/RNA BACTERIOPHAGE HK022 2DR5 COMPLEX STRUCTURE OF CCA ADDING ENZYME WITH MINI-HELIX LACKING CCA X-RAY DIFFRACTION 10-31-06 K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.80 synthetic 2Z74 T. TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSE-6-PHOSPHATE X-RAY DIFFRACTION 9-04-07 D.J.KLEIN,S.R.WILKINSON,M.D.BEEN,A.R.FERRE-D'AMARE RIBOZYME, RIBOSWITCH, GLUCOSE-6-PHOSPHATE, GLUCOSAMINE-6- PHOSPHATE, DNA, RNA 2.20 synthetic 3J5Y STRUCTURE OF THE MAMMALIAN RIBOSOMAL PRE-TERMINATION COMPLEX ASSOCIATED WITH ERF1-ERF3-GDPNP ELECTRON MICROSCOPY 12-25-13 A.DES GEORGES,Y.HASHEM,A.UNBEHAUN,R.A.GRASSUCCI,D.TAYLOR, C.U.T.HELLEN,T.V.PESTOVA,J.FRANK TRANSLATION TERMINATION, ERF1, ERF3, TRNALEU, RIBOSOME, MAMMALIAN, TRANSLATION-RNA COMPLEX 9.70 ORYCTOLAGUS CUNICULUS,HOMO SAPIENS 2D2L CRYSTAL STRUCTURE OF A MINIMAL, ALL-RNA HAIRPIN RIBOZYME WITH A PROPYL LINKER (C3) AT POSITION U39 X-RAY DIFFRACTION 11-01-05 S.ALAM,V.GRUM-TOKARS,J.KRUCINSKA,M.L.KUNDRACIK,J.E.WEDEKIND RIBOZYME, PROPYL LINKER, RNA 2.50 synthetic,synthetic,synthetic,synthetic 357D .5 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA X-RAY DIFFRACTION 12-01-97 C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ U-RNA, DOUBLE HELIX, KINKED, INTERNAL LOOP, OVERHANGING BASE, MODIFIED, MISMATCHED 3.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2R92 ELONGATION COMPLEX OF RNA POLYMERASE II WITH ARTIFICIAL RDRP SCAFFOLD X-RAY DIFFRACTION 11-27-07 E.LEHMANN,F.BRUECKNER,P.CRAMER TRANSFERASE/DNA/RNA, DNA-BINDING, PHOSPHORYLATION, RNA POLYMERASE II, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSFERASE, TRANSCRIPTION, RNA-DEPENDENT, RNA-DEPENDENT RNA SYNTHESIS, RDRP, DDRP, RNA-BINDING, DNA-DIRECTED RNA POLYMERASE, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSFERASE/RNA COMPLEX 3.80 synthetic,synthetic 4KJ6 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME, RIBOSOME- ANTIBIOTIC COMPLEX 2.90 ESCHERICHIA COLI 1BGZ S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES SOLUTION NMR 1-13-99 K.KALURACHCHI,E.P.NIKONOWICZ RIBONUCLEIC ACID, 16S RRNA, INTERNAL LOOP, BASE TRIPLE synthetic 2O5J CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG X-RAY DIFFRACTION 7-03-07 D.G.VASSYLYEV,M.N.VASSYLYEVA RNA POLYMERASE, ELONGATION COMPLEX, TEMPLATE DNA, NON- TEMPLATE DNA, RNA TRANSCRIPT, NTP SUBSTRATE, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.00 synthetic 2PJP STRUCTURE OF THE MRNA-BINDING DOMAIN OF ELONGATION FACTOR SELB FROM E.COLI IN COMPLEX WITH SECIS RNA X-RAY DIFFRACTION 10-30-07 N.SOLER,D.FOURMY,S.YOSHIZAWA SELB, PROTEIN-RNA COMPLEX, ELONGATION FACTOR, SECIS, WINGED- HELIX, BULGE, TRANSLATION/RNA COMPLEX 2.30 ESCHERICHIA COLI 4FYA THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 1F5H THE G7(SYN)-G4(ANTI) STRUCTURE OF R(GCAGGCGUGC)2 SOLUTION NMR 6-26-00 M.E.BURKARD,D.H.TURNER GUANINE-GUANINE, GG MISMATCH, CONFORMATIONAL EXCHANGE, BASE FLIPPING, SYN GLYCOSIDIC TORSION, RNA synthetic 4J1G LEANYER ORTHOBUNYAVIRUS NUCLEOPROTEIN-SSRNA COMPLEX X-RAY DIFFRACTION 4-10-13 F.NIU,N.SHAW,Y.WANG,L.JIAO,W.DING,X.LI,P.ZHU,H.UPUR,S.OUYANG,G.CHENG, Z.J.LIU PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN, RNA BINDING, NUCLEOCAPSID PROTEIN, VIRAL PROTEIN-RNA COMPLEX 2.79 synthetic 1MVR DECODING CENTER & PEPTIDYL TRANSFERASE CENTER FROM THE X- RAY STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME, ALIGNED TO THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME ELECTRON MICROSCOPY 4-01-03 U.B.RAWAT,A.V.ZAVIALOV,J.SENGUPTA,M.VALLE,R.A.GRASSUCCI, J.LINDE,B.VESTERGAARD,M.EHRENBERG,J.FRANK RF2, RELEASE COMPLEX, CONFORMATIONAL CHANGES, RIBOSOME 12.80 ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12 3V27 CRYSTAL STRUCTURE OF HPF BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 50S SUBUNIT OF THE 1ST RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME HIBERNATION FACTOR, YHBH, PROTEIN E, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2I2Y SOLUTION STRUCTURE OF THE RRM OF SRP20 BOUND TO THE RNA CAUC SOLUTION NMR 12-12-06 Y.F.HARGOUS,F.H.ALLAIN PROTEIN-RNA COMPLEX RRM ALPHA-BETA SANDWICH BETA1-ALPHA1- BETA2-BETA3-ALPHA2-BETA4, RNA BINDING PROTEIN/CHIMERA/RNA COMPLEX STREPTOCOCCUS SP. 'GROUP G', HOMO 3EX7 THE CRYSTAL STRUCTURE OF EJC IN ITS TRANSITION STATE X-RAY DIFFRACTION 12-09-08 G.R.ANDERSEN,K.H.NIELSEN PROTEIN-RNA COMPLEX, MRNA PROCESSING, MRNA SPLICING, MRNA TRANSPORT, NONSENSE-MEDIATED MRNA DECAY, NUCLEUS, RNA- BINDING, SPLICEOSOME, TRANSPORT, ALTERNATIVE SPLICING, CYTOPLASM, PHOSPHOPROTEIN, ACETYLATION, ATP-BINDING, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING, RRNA PROCESSING, COILED COIL, HYDROLASE/RNA BINDING PROTEIN/RNA COMPLEX 2.30 synthetic 2K96 SOLUTION STRUCTURE OF THE RDC-REFINED P2B-P3 PSEUDOKNOT FROM HUMAN TELOMERASE RNA (DELTA U177) SOLUTION NMR 11-25-08 N.-K.KIM,Q.ZHANG,J.ZHOU,C.A.THEIMER,R.D.PETERSON,J.FEIGON TELOMERASE, RNA, TRIPLE HELIX, RDC synthetic 3BBO HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME ELECTRON MICROSCOPY 5-27-08 M.R.SHARMA,D.N.WILSON,P.P.DATTA,C.BARAT,F.SCHLUENZEN, P.FUCINI,R.K.AGRAWAL LARGE RIBOSOMAL SUBUNIT, SPINACH CHLOROPLAST RIBOSOME, RIBONUCLEOPROTEIN PARTICLE, MACROMOLECULAR COMPLEX 9.40 SPINACEA OLERACEA,SPINACEA OLERACEA,SPINACEA OLERACEA 4K4V POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R5+1_FORM) X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, CHIMERA RNA-DNA, PROTEIN- RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.63 synthetic 1N32 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT BOUND TO CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE FIRST CODON POSITION AT THE A SITE WITH PAROMOMYCIN X-RAY DIFFRACTION 11-29-02 J.M.OGLE,F.V.MURPHY IV,M.J.TARRY,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, A SITE, DECODING, NEAR- COGNATE, MISMATCH, WOBBLE, GU, G:U, TRANSFER RNA, TRNA, ANTICODON, STEM-LOOP, MESSENGER RNA, MRNA, CODON, ANTIBIOTIC, PAROMOMYCIN 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2L3J THE SOLUTION STRUCTURE OF THE ADAR2 DSRBM-RNA COMPLEX REVEALS A SEQUENCE-SPECIFIC READ OUT OF THE MINOR GROOVE SOLUTION NMR 10-27-10 R.STEFL,F.C.OBERSTRASS,F.H.-T.ALLAIN EDITING, DSRNA RECOGNITION, DSRBM, HYDROLASE-RNA COMPLEX RATTUS NORVEGICUS 1X9K AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C X-RAY DIFFRACTION 11-22-05 S.ALAM,V.GRUM-TOKARS,J.KRUCINSKA,M.L.KUNDRACIK,J.E.WEDEKIND HAIRPIN RIBOZYME, ALL-RNA, MUTATION, HIGH SALT, S-TURN, E- LOOP, CATALYTIC RNA 3.17 synthetic,synthetic,synthetic,synthetic 1Z43 CRYSTAL STRUCTURE OF 7S.S SRP RNA OF M. JANNASCHII X-RAY DIFFRACTION 6-14-05 T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON RNA, TETRA-LOOP 2.60 synthetic 1BZ3 STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE SOLUTION NMR 4-27-99 P.C.DURANT,D.R.DAVIS TRNA, PSEUDOURIDINE, ANTICODON synthetic 3SKR CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, COBALT HEXAMMINE SOAK X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV THREE-WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA 3.10 synthetic 3OFX CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CLINDAMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, CLINDAMYCIN, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.29 ESCHERICHIA COLI 1WWF NMR STRUCTURE DETERMINED FOR MLV NC COMPLEX WITH RNA SEQUENCE CCUCCGU SOLUTION NMR 4-05-05 A.DEY,D.YORK,A.SMALLS-MANTEY,M.F.SUMMERS HYDROPHOBIC GUANOSINE BINDING POCKET, VIRAL PROTEIN/RNA COMPLEX MOLONEY MURINE LEUKEMIA VIRUS 1ZHO THE STRUCTURE OF A RIBOSOMAL PROTEIN L1 IN COMPLEX WITH MRNA X-RAY DIFFRACTION 5-09-06 N.NEVSKAYA,S.TISHCHENKO,S.VOLCHKOV,V.KLJASHTORNY,E.NIKONOVA, O.NIKONOV,A.NIKULIN,C.KOHRER,W.PIENDL,R.ZIMMERMANN, P.STOCKLEY,M.GARBER,S.NIKONOV RIBOSOME, RIBOSOMAL PROTEIN, MRNA-PROTEIN COMPLEX, L1, REGULATION OF GENE EXPRESSION, RNA-PROTEIN INTERACTION, STRUCTURAL PROTEIN/RNA COMPLEX 2.60 synthetic 2F8S CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA X-RAY DIFFRACTION 10-31-06 Y.R.YUAN,H.Y.CHEN,D.J.PATEL ARGONAUTE, SIRNA, RISC LOADING COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX 3.00 synthetic 420D CRYSTAL STRUCTURE OF A 16-MER RNA DUPLEX WITH NON-ADJACENT A(ANTI).G(SYN) MISMATCHES X-RAY DIFFRACTION 1-13-99 B.PAN,S.N.MITRA,M.SUNDARALINGAM A-RNA STRUCTURE, MISMATCH A RNA 1.90 synthetic 2AGN FITTING OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE DOMAINS INTO THE 15 A CRYO-EM MAP OF A HCV IRES-80S RIBOSOME (H. SAPIENS) COMPLEX ELECTRON MICROSCOPY 7-25-06 D.BOEHRINGER,R.THERMANN,A.OSTARECK-LEDERER,J.D.LEWIS,H.STARK HCV, IRES, RNA 15.00 synthetic,synthetic,synthetic,synthetic,synthetic 1OW9 NMR STRUCTURE OF THE ACTIVE CONFORMATION OF THE VS RIBOZYME CLEAVAGE SITE SOLUTION NMR 5-20-03 B.HOFFMANN,G.T.MITCHELL,P.GENDRON,F.MAJOR,A.A.ANDERSEN, R.A.COLLINS,P.LEGAULT VS RIBOZYME, SUBSTRATE HAIRPIN, CLEAVAGE SITE, SHEARED G-A BASE PAIRS, SHARED SHEARED G-A BASE PAIRS, MAGNESIUM ION BINDING, GNRA TETRALOOP, RIBOZE ZIPPER, RNA synthetic 3GM7 .58 A RESOLUTION X-RAY STRUCTURE OF (CUG)6 X-RAY DIFFRACTION 5-26-09 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI STRETCHED U-U WOBBLE, RNA, MYOTONIC DYSTROPHY, CUG REPEATS 1.58 synthetic 4MGM CRYSTAL STRUCTURE OF THE IN VITRO TRANSCRIBED G. KAUSTOPHILUS TRNA-GLY X-RAY DIFFRACTION 10-23-13 J.C.GRIGG,A.KE RNA-RNA COMPLEX, BASE STACKING, T-LOOP, RNA BINDING, RNA 3.20 synthetic 3ZD6 SNAPSHOT 1 OF RIG-I SCANNING ON RNA DUPLEX X-RAY DIFFRACTION 8-07-13 D.LUO,A.M.PYLE HYDROLASE-RNA COMPLEX, INNATE IMMUNITY 2.80 SYNTHETIC CONSTRUCT 1YY0 CRYSTAL STRUCTURE OF AN RNA DUPLEX CONTAINING A 2'-AMINE SUBSTITUTION AND A 2'-AMIDE PRODUCT PRODUCED BY IN-CRYSTAL ACYLATION AT A C-A MISMATCH X-RAY DIFFRACTION 10-18-05 C.M.GHERGHE,J.M.KRAHN,K.M.WEEKS '-AMINE, RNA, DUPLEX, MISMATCH, 2-AMIDE, IN-CRYSTAL REACTION 3.20 synthetic,synthetic 3AVY STRUCTURE OF VIRAL RNA POLYMERASE COMPLEX 6 X-RAY DIFFRACTION 1-18-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 2.62 synthetic,synthetic 3F2W CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, BA2+ SOAK. X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG FMN, RIBOSWITCH, TRANSCRIPTION, BARIUM, RNA 3.45 synthetic 3SIU STRUCTURE OF A HPRP31-15.5K-U4ATAC 5' STEM LOOP COMPLEX, MONOMERIC FORM X-RAY DIFFRACTION 8-10-11 S.LIU,H.GHALEI,R.LUHRMANN,M.C.WAHL MAJOR AND MINOR SPLICEOSOME, RNA-PROTEIN COMPLEX, U4 SNRNP AND U4ATAC SNRNP, RNA-BINDING PROTEIN, PRE-MRNA SPLICING, U4 SNRNA, NUCLEUS, SPLICING-RNA COMPLEX 2.63 HOMO SAPIENS 2B6G RNA RECOGNITION BY THE VTS1 SAM DOMAIN SOLUTION NMR 1-24-06 L.W.DONALDSON,P.E.JOHNSON ALPHA-HELIX, PENTALOOP, HAIRPIN, RNA BINDING PROTEIN synthetic 3HOX COMPLETE RNA POLYMERASE II ELONGATION COMPLEX V X-RAY DIFFRACTION 7-28-09 J.F.SYDOW,F.BRUECKNER,A.C.M.CHEUNG,G.E.DAMSMA,S.DENGL, E.LEHMANN,D.VASSYLYEV,P.CRAMER RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, DNA-RNA MISMATCH, DNA- BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID COMPLEX 3.65 synthetic 2QOX CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.93 ESCHERICHIA COLI,ESCHERICHIA COLI 4ABR COMPLEX OF SMPB, A TMRNA FRAGMENT AND EF-TU-GDP-KIRROMYCIN WITH THE 70S RIBOSOME X-RAY DIFFRACTION 3-28-12 C.NEUBAUER,R.GILLET,A.C.KELLEY,V.RAMAKRISHNAN TMRNA, RIBOSOME, SMPB, EF-TU 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 1KIS TAR-TAR "KISSING" HAIRPIN COMPLEX DERIVED FROM THE HIV GENOME, NMR, 1 STRUCTURE SOLUTION NMR 10-15-97 K.Y.CHANG,I.TINOCO JUNIOR RIBONUCLEIC ACID, RNA synthetic,synthetic 3E1A STRUCTURE OF THE 30S SUBUNIT AND THE TRNAS OF E. COLI RIBOSOME IN PRE-ACCOMMODATION STATE ELECTRON MICROSCOPY 8-18-09 B.DEVKOTA,T.R.CAULFIELD,R.-Z.TAN,S.C.HARVEY RIBOSOME, TRANSLATION, ACCOMMODATION, TRNA SELECTION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, ENDONUCLEASE, HYDROLASE, NUCLEASE, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION 9.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3F73 ALIGNMENT OF GUIDE-TARGET SEED DUPLEX WITHIN AN ARGONAUTE SILENCING COMPLEX X-RAY DIFFRACTION 12-16-08 Y.WANG,H.LI,G.SHENG,S.JURANEK,T.TUSCHL,D.J.PATEL ARGONAUTE, PROTEIN-DNA-RNA-COMPLEX, PLASMID, NUCLEIC ACID BINDING PROTEIN/DNA/RNA COMPLEX 3.00 synthetic 1C0O SOLUTION STRUCTURE OF THE P5 HAIRPIN FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, 19 CONVERGED STRUCTURES SOLUTION NMR 8-31-99 G.COLMENAREJO,I.TINOCO JR. RIBONUCLEIC ACID, COBALT (III) HEXAMMINE, METAL BINDING, NMR, RNA STRUCTURE TETRAHYMENA THERMOPHILA 4BYP CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX ELECTRON MICROSCOPY 11-20-13 I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, S.H.W.SCHERES RIBOSOME, RIBOSOME INITIATION COMPLEX, INITIATOR FACTOR EIF5B, CRYO EM, SINGLE PARTICLE ANALYSIS 4.30 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 1HR2 CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON. X-RAY DIFFRACTION 4-12-01 K.JUNEAU,E.R.PODELL,D.J.HARRINGTON,T.R.CECH RNA, P4-P6, C209, RIBOZYME, TETRAHYMENA, GROUP I INTRON, RIBONUCLEIC ACID 2.25 synthetic 2ZHA COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDU AND CTP X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.95 ARCHAEOGLOBUS FULGIDUS 4EJ9 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G299A. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATION, RAM, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME 3.52 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1YTY STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOANTIGEN X-RAY DIFFRACTION 1-17-06 M.TEPLOVA,Y.R.YUAN,S.ILIN,L.MALININA,A.T.PHAN,A.TEPLOV, D.J.PATEL PROTEIN-RNA COMPLEX, TRANSCRIPTION/RNA COMPLEX 2.29 synthetic 3IEM CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH RNA ANALOG X-RAY DIFFRACTION 7-28-10 H.ISHIKAWA,N.NAKAGAWA,S.KURAMITUS,S.YOKOYAMA,R.MASUI METALLO BETA LACTAMASE FOLD, ENDONUCLEASE, HYDROLASE, METAL-BINDING, NUCLEASE, RNA-BINDING, RRNA PROCESSING, HYDROLASE-RNA COMPLEX 2.50 synthetic 3IZ9 MODEL OF THE LARGE SUBUNIT RNA BASED ON A 5.5 A CRYO-EM MAP OF TRITICUM AESTIVUM TRANSLATING 80S RIBOSOME ELECTRON MICROSCOPY 12-01-10 J.-P.ARMACHE,A.JARASCH,A.M.ANGER,E.VILLA,T.BECKER,S.BHUSHAN, F.JOSSINET,M.HABECK,G.DINDAR,S.FRANCKENBERG,V.MARQUEZ,T.MIELKE, M.THOMM,O.BERNINGHAUSEN,B.BEATRIX,J.SOEDING,E.WESTHOF,D.N.WILSON, R.BECKMANN EUKARYOTIC RIBOSOME, HOMOLOGY MODELLING, DE NOVO MODELING, RIBOSOMAL RNA, RRNA, RNA EXPANSION SEGMENTS, RIBOSOME 5.50 TRITICUM AESTIVUM,TRITICUM AESTIVUM,TRITICUM AESTIVUM 3CUN AMINOACYL-TRNA SYNTHETASE RIBOZYME X-RAY DIFFRACTION 6-24-08 H.XIAO,H.MURAKAMI,H.SUGA,A.R.FERRE-D'AMARE ARS RIBOZYME CATALYTIC RNA, RNA/RNA BINDING COMPLEX 3.00 HOMO SAPIENS 3NDB CRYSTAL STRUCTURE OF A SIGNAL SEQUENCE BOUND TO THE SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 2-23-11 T.HAINZL,S.HUANG,E.SAUER-ERIKSSON PROTEIN-RNA COMPLEX, SIGNAL RECOGNITION PARTICLE, SIGNAL SEQUENCE, RIBONUCLEOPROTEIN, SIGNALING PROTEIN-RNA COMPLEX 3.00 METHANOCALDOCOCCUS JANNASCHII DSM 2661 3IGI TERTIARY ARCHITECTURE OF THE OCEANOBACILLUS IHEYENSIS GROUP II INTRON X-RAY DIFFRACTION 12-22-09 N.TOOR,K.S.KEATING,O.FEDOROVA,K.RAJASHANKAR,J.WANG,A.M.PYLE RNA, RIBONUCLEIC ACID, INTRON, GROUP II, EXON 3.12 synthetic,synthetic 2A43 CRYSTAL STRUCTURE OF A LUTEOVIRAL RNA PSEUDOKNOT AND MODEL FOR A MINIMAL RIBOSOMAL FRAMESHIFTING MOTIF X-RAY DIFFRACTION 9-27-05 P.S.PALLAN,W.S.MARSHALL,J.HARP,F.C.JEWETT III,Z.WAWRZAK, B.A.BROWN II,A.RICH,M.EGLI PLRV, POTATO LEAF ROLL VIRUS; BWYV, BEET WESTERN YELLOW VIRUS, PK, PSEUDOKNOT, RNA. 1.34 synthetic 2G9C MODIFIED PYRIMIDINES SPECIFICALLY BIND THE PURINE RIBOSWITCH X-RAY DIFFRACTION 11-21-06 S.D.GILBERT,S.J.MEDIATORE,R.T.BATEY MRNA, RIBOSWITCH, TRIAMINOPYRIMIDINE, RNA-LIGAND COMPLEX 1.70 synthetic 3J2D DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 18.70 ESCHERICHIA COLI 3MS1 RECOGNITION OF THE AMBER STOP CODON BY RELEASE FACTOR RF1. THIS ENTRY 3MS1 CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3MR8. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3MRZ (50S) AND 3MS0 (30S). X-RAY DIFFRACTION 7-14-10 A.KOROSTELEV,J.ZHU,H.ASAHARA,H.F.NOLLER S, RIBOSOME, TERMINATION, RELEASE FACTOR, RF1, STOP CODON, UGA, AMBER, TRNA 3.62 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1JJ2 FULLY REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION X-RAY DIFFRACTION 8-01-01 D.J.KLEIN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME ASSEMBLY, RNA-RNA, PROTEIN-RNA, PROTEIN-PROTEIN 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2KRW SOLUTION STRUCTURE OF THE E COLI TRNA-ARG1 (ACG) CONTAINING THE 2- THIOCYTIDINE MODIFICATION IN POSITION 32 SOLUTION NMR 12-01-10 Y.BILBILLE,P.F.AGRIS RNA, TRNA, 2-THIOCYTIDINE, ASL, MODIFICATION synthetic 4L6M CRYSTAL STRUCTURE OF BLASTICIDIN S BOUND TO THERMUS THERMOPHILUS 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT, TRNA AND MRNA MOLECULES FROM THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 7-31-13 E.SVIDRITSKIY,A.A.KOROSTELEV TRANSLATION TERMINATION, PEPTIDYL TRANSFER, RIBOSOMAL CRYSTAL STRUCTURE, TRANSLATION INHIBITOR, BLASTICIDIN S, RIBOSOME 3.40 THERMUS THERMOPHILUS,ESCHERICHIA COLI,SYNTHETIC DNA 4GD1 STRUCTURES OF THE BACTERIAL RIBOSOME IN CLASSICAL AND HYBRID STATES OF TRNA BINDING X-RAY DIFFRACTION 10-24-12 J.A.DUNKLE,L.WANG,M.B.FELDMAN,A.PULK,V.B.CHEN,G.J.KAPRAL,J.NOESKE, J.S.RICHARDSON,S.C.BLANCHARD,J.H.D.CATE PROTEIN BIOSYNTHESIS, RNA, TRNA, TRANSFER RNA, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME RECYCLING FACTOR, RRF, RIBOSOME 3.00 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1ZE2 CONFORMATIONAL CHANGE OF PSEUDOURIDINE 55 SYNTHASE UPON ITS ASSOCIATION WITH RNA SUBSTRATE X-RAY DIFFRACTION 4-26-05 K.PHANNACHET,R.H.HUANG PROTEIN-RNA COMPLEX, LYASE/RNA COMPLEX 3.00 synthetic 480D CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA X-RAY DIFFRACTION 10-08-99 C.C.CORRELL,I.G.WOOL,A.MUNISHKIN SARCIN/RICIN LOOP OR DOMAIN, RNA RECOGNITION, RIBOSOMES, ELONGATION FACTORS, CRYSTAL STRUCTURE 1.50 synthetic 2AW4 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-08-05 B.S.SCHUWIRTH,M.A.BOROVINSKAYA,C.W.HAU,W.ZHANG,A.VILA- SANJURJO,J.M.HOLTON,J.H.D.CATE RNA-PROTEIN COMPLEX, 50S RIBOSOMAL SUBUNIT, RIBOSOME 3.46 ESCHERICHIA COLI,ESCHERICHIA COLI 3KOA M296I MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA AND GTP X-RAY DIFFRACTION 7-07-10 C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE RNA DEPENDENT RNA POLYMERASE, RIBAVIRIN, 3D POLYMERASE, FOOT-AND- MOUTH DISEASE VIRUS, TRANSFERASE-RNA COMPLEX 2.40 synthetic,synthetic 4KQY BACILLUS SUBTILIS YITJ S BOX/SAM-I RIBOSWITCH X-RAY DIFFRACTION 8-07-13 C.LU GENE REGULATION, RNA 3.02 BACILLUS SUBTILIS 3DF2 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH HYGROMYCIN B. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-19-08 M.A.BOROVINSKAYA,S.SHOJI,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI,ESCHERICHIA COLI 1NTQ '(DCCUCCUU)3':3'(RAGGAGGAAA)5' SOLUTION NMR 6-10-03 B.M.ZNOSKO,T.W.BARNES III,T.R.KRUGH,D.H.TURNER DNA, RNA, HYBRID, PROPYNYL, DNA/RNA COMPLEX synthetic 2ASB STRUCTURE OF A MYCOBACTERIUM TUBERCULOSIS NUSA-RNA COMPLEX X-RAY DIFFRACTION 10-11-05 B.BEUTH,S.PENNELL,K.B.ARNVIG,S.R.MARTIN,I.A.TAYLOR PROTEIN-RNA COMPLEX, TRANSCRIPTION/RNA COMPLEX 1.50 synthetic 2RPT STRUCTURE OF THE CC MISMATCH FROM THE THYMIDYLATE SYNTHASE BINDING SITE 1 HAIRPIN AND ANALYSIS OF ITS INTERACTION WITH PAROMOMYCIN SOLUTION NMR 8-25-09 T.J.TAVARES,P.E.JOHNSON NMR SPECTROSCOPY, RNA STRUCTURE, PAROMOMYCIN, AMINOGLYCOSIDE-RNA INTERACTION synthetic 364D .0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA X-RAY DIFFRACTION 1-02-98 C.C.CORRELL,B.FREEBORN,P.B.MOORE,T.A.STEITZ U-RNA, DOUBLE HELIX, KINKED, INTERNAL LOOP, OVERHANGING BASE, MODIFIED, MISMATCHED 3.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1O0C CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE X-RAY DIFFRACTION 4-15-03 T.L.BULLOCK,J.J.PERONA ENGINEERED TRNA, TRNA-PROTEIN COMPLEX, AMINO ACID SPECIFICITY, LIGASE/RNA COMPLEX 2.70 synthetic 2ZNI CRYSTAL STRUCTURE OF PYRROLYSYL-TRNA SYNTHETASE-TRNA(PYL) COMPLEX FROM DESULFITOBACTERIUM HAFNIENSE X-RAY DIFFRACTION 12-30-08 K.NOZAWA,Y.ARAISO,D.SOLL,R.ISHITANI,O.NUREKI LIGASE/RNA COMPLEX 3.10 synthetic 4FAW STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF K+, MG2+ AND A HYDROLYZED OLIGONUCLEOTIDE FRAGMENT X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, SPLICEOSOME, RNA 2.70 OCEANOBACILLUS IHEYENSIS,synthetic 1DZ5 THE NMR STRUCTURE OF THE 38KDA U1A PROTEIN-PIE RNA COMPLEX REVEALS THE BASIS OF COOPERATIVITY IN REGULATION OF POLYADENYLATION BY HUMAN U1A PROTEIN SOLUTION NMR 3-29-00 L.VARANI,S.I.GUNDERSON,I.W.MATTAJ,L.E.KAY,D.NEUHAUS,G.VARANI RIBONUCLEOPROTEIN/RNA, COMPLEX (RIBONUCLEOPROTEIN/RNA), POLYADENYLATION, PROTEIN PROTEIN INTERACTION, RNA PROTEIN INTERACTION, U1A PROTEIN HOMO SAPIENS 3J56 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE- TRANSLOCATION STATE (PRE5A, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1P87 REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME ELECTRON MICROSCOPY 6-17-03 H.GAO,J.SENGUPTA,M.VALLE,A KOROSTELEV,N.ESWAR,S.M.STAGG, P.VAN ROEY,R.K.AGRAWAL,S.T.HARVEY,A.SALI,M.S.CHAPMAN,J.FRANK EFG-GTP-BOUND STATE, RATCHET-LIKE MOVEMENT, REAL-SPACE REFINEMENT, RIBOSOME 11.50 ESCHERICHIA COLI 3AM1 CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH ANTICODON-STEM/LOOP TRUNCATED TRNA(SEC) X-RAY DIFFRACTION 12-29-10 Y.ARAISO,R.ISHITANI,O.NUREKI KINASE, TRANSFERASE-RNA COMPLEX 2.40 synthetic 3FO4 CRYSTAL STRUCTURE OF GUANINE RIBOSWITCH C74U MUTANT BOUND TO 6-CHLOROGUANINE X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,R.T.BATEY MRNA, RIBOSWITCH, 6-CHLOROGUANINE, ADENINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, THREE-WAY JUNCTION 1.90 synthetic 1YLS CRYSTAL STRUCTURE OF SELENIUM-MODIFIED DIELS-ALDER RIBOZYME COMPLEXED WITH THE PRODUCT OF THE REACTION BETWEEN N- PENTYLMALEIMIDE AND COVALENTLY ATTACHED 9- HYDROXYMETHYLANTHRACENE X-RAY DIFFRACTION 2-22-05 A.SERGANOV,S.KEIPER,L.MALININA,V.TERESHKO,E.SKRIPKIN, C.HOBARTNER,A.POLONSKAIA,A.T.PHAN,R.WOMBACHER,R.MICURA, Z.DAUTER,A.JASCHKE,D.J.PATEL CARBON-CARBON BOND FORMATION, CATALYTIC MECHANISM, CRYSTAL STRUCTURE, DIELS-ALDER REACTION, RIBOZYME, RNA 3.00 synthetic,synthetic 2LU0 NMR SOLUTION STRUCTURE OF THE KAPPA-ZETA REGION OF S.CEREVISIAE GROUP II INTRON AI5(GAMMA) SOLUTION NMR 4-10-13 D.DONGHI,M.PECHLANER,C.FINAZZO,B.KNOBLOCH,R.K.O.SIGEL RNA, THREE-WAY JUNCTION, METAL ION, GROUP II INTRON, RIBOZYME SACCHAROMYCES CEREVISIAE 4G5L CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TETRACYCLINE. THIS ENTRY CONTAINS THE 50S SUBUNIT OF MOLECULE A. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2J00 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I. X-RAY DIFFRACTION 9-28-06 M.SELMER,C.M.DUNHAM,F.V.MURPHY,A.WEIXLBAUMER,S.PETRY, J.R.WEIR,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRNA, PAROMOMYCIN, MRNA, TRANSLATION 2.8 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3F1H CRYSTAL STRUCTURE OF A TRANSLATION TERMINATION COMPLEX FORMED WITH RELEASE FACTOR RF2. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 12-23-08 A.KOROSTELEV,H.ASAHARA,L.LANCASTER,M.LAURBERG,A.HIRSCHI, H.F.NOLLER RF2, RIBOSOME, TERMINATION, TRNA 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3PYU CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 OF CRPV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3J36 TETRACYCLINE RESISTANCE PROTEIN TET(O) BOUND TO THE RIBOSOME ELECTRON MICROSCOPY 4-03-13 W.LI,G.C.ATKINSON,N.S.THAKOR,U.ALLAS,C.LU,K.Y.CHAN,T.TENSON, K.SCHULTEN,K.S.WILSON,V.HAURYLIUK,J.FRANK S RIBOSOME, ANTIBIOTIC RESISTANCE, RIBOSOME 9.80 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3ZVP CRYSTAL STRUCTURE OF THE HYBRID STATE OF RIBOSOME IN COMPLEX WITH THE GUANOSINE TRIPHOSPHATASE RELEASE FACTOR 3 X-RAY DIFFRACTION 9-28-11 H.JIN,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, HYBRID STATE, P/E TRNA, GUANOSINE TRIPHOSPHATASE, RELEASE FACTOR 3 3.8 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2IY3 STRUCTURE OF THE E. COLI SIGNAL RECOGNITION PARTICLE BOUND TO A TRANSLATING RIBOSOME ELECTRON MICROSCOPY 11-02-06 C.SCHAFFITZEL,M.OSWALD,I.BERGER,T.ISHIKAWA,J.P.ABRAHAMS, H.K.KOERTEN,R.I.KONING,N.BAN RNA-BINDING, RNA-BINDING PROTEIN COMPLEX, SIGNAL RECOGNITION PARTICLE 16.00 ESCHERICHIA COLI 2FTC STRUCTURAL MODEL FOR THE LARGE SUBUNIT OF THE MAMMALIAN MITOCHONDRIAL RIBOSOME ELECTRON MICROSCOPY 4-11-06 J.A.MEARS,M.R.SHARMA,R.R.GUTELL,P.E.RICHARDSON,R.K.AGRAWAL, S.C.HARVEY MITOCHONDRIAL RIBOSOME, LARGE RIBOSOMAL SUBUNIT, RIBOSOMAL RNA 12.10 BOS TAURUS 2D2K CRYSTAL STRUCTURE OF A MINIMAL, NATIVE (U39) ALL-RNA HAIRPIN RIBOZYME X-RAY DIFFRACTION 11-01-05 S.ALAM,V.GRUM-TOKARS,J.KRUCINSKA,M.L.KUNDRACIK,J.E.WEDEKIND RIBOZYME, S-TURN, DUAL CONFORMATION, RNA 2.65 synthetic,synthetic,synthetic,synthetic 1EKZ NMR STRUCTURE OF THE COMPLEX BETWEEN THE THIRD DSRBD FROM DROSOPHILA STAUFEN AND A RNA HAIRPIN SOLUTION NMR 8-21-00 A.RAMOS,S.GRUNERT,M.BYCROFT,D.ST JOHNSTON,G.VARANI NMR STRUCTURE, PROTEIN/RNA, PROTEIN DSRBD, DROSOPHILA, RNA HAIRPIN, CELL CYCLE/RNA COMPLEX DROSOPHILA MELANOGASTER 2KRV SOLUTION STRUCTURE OF THE E. COLI TRNA-ARG1 (ICG) ASL CONTAINING THE 2-THIOCYTIDINE MODIFICATION SOLUTION NMR 12-01-10 Y.BILBILLE,P.F.AGRIS RNA, TRNA, 2-THIOCYTIDINE, MODIFICATION, ASL synthetic 4FVU STRUCTURAL BASIS FOR THE DSRNA SPECIFICITY OF THE LASSA VIRUS NP EXONUCLEASE X-RAY DIFFRACTION 9-19-12 K.M HASTIE,L.B.KING,M.A.ZANDONATTI,E.O.SAPHIRE ARENAVIRUS, NUCLEOPROTEIN, DSRNA, EXONUCLEASE, HYDROLASE, HYDROLASE- RNA COMPLEX 2.91 SYNTHETIC CONSTRUCT,SYNTHETIC CONSTRUCT 1P79 CRYSTAL STRUCTURE OF A BULGED RNA TETRAPLEX: IMPLICATIONS FOR A NOVEL BINDING SITE IN RNA TETRAPLEX X-RAY DIFFRACTION 11-04-03 B.PAN,Y.XIONG,K.SHI,M.SUNDARALINGAM RNA, TETRAPLEX, BULGE 1.10 synthetic 1NJM THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM) AND THE ANTIBIOTIC SPARSOMYCIN X-RAY DIFFRACTION 2-11-03 A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS, R.BERISIO,H.BARTELS,H.A.HANSEN,A.YONATH RIBOSOMES, TRNA, PUROMYCIN, SPARSOMYCIN, PEPTIDYL- TRANSFERASE, PEPTIDE BOND FORMATION 3.60 DEINOCOCCUS RADIODURANS,synthetic 1J2B CRYSTAL STRUCTURE OF ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE COMPLEXED WITH LAMBDA-FORM TRNA(VAL) X-RAY DIFFRACTION 5-27-03 R.ISHITANI,O.NUREKI,N.NAMEKI,N.OKADA,S.NISHIMURA,S.YOKOYAMA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) TRANSFERASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, TRANSFERASE/RNA COMPLEX 3.30 synthetic 2KYE SOLUTION STRUCTURE OF THE PSEUDOURIDINE MODIFIED P6.1 HAIRPIN OF HUMAN TELOMERASE RNA SOLUTION NMR 6-30-10 N.-K.KIM,C.A.THEIMER,J.R.MITCHELL,K.COLLINS,J.FEIGON TELOMERASE, RNA, PSEUDOURIDINE, P6.1, HAIRPIN synthetic 2PPB CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG AND ANTIBIOTIC STREPTOLYDIGIN X-RAY DIFFRACTION 7-17-07 D.G.VASSYLYEV,M.N.VASSYLYEVA,I.ARTSIMOVITCH,R.LANDICK RNA POLYMERASE, ELONGATION COMPLEX, TEMPLATE DNA, NON- TEMPLATE DNA, RNA TRANSCRIPT, NTP SUBSTRATE, ANTIBIOTIC STREPTOLYDIGIN, TRANSFERASE/DNA/RNA COMPLEX 3.00 synthetic 1M82 SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS SOLUTION NMR 6-03-03 C.-J.PARK,S.-H.BAE,M.-K.LEE,G.VARANI,B.-S.CHOI ASYMMETRIC INTERNAL LOOP, A-FORM HELIX synthetic 1AJT FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON, NMR, 1 STRUCTURE SOLUTION NMR 8-20-97 K.J.LUEBKE,S.M.LANDRY,I.TINOCO JUNIOR RNA BULGE LOOP, GROUP I INTRON, RIBONUCLEIC ACID synthetic,synthetic 3HUW STRUCTURE OF EF-P BOUND TO THE 70S RIBOSOME; THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE TRNA AND EF-P FOR MOLECULE I. X-RAY DIFFRACTION 9-29-09 R.E.STANLEY,G.BLAHA TRANSLATION, ELONGATION FACTOR, INITIATION, L1-STALK, RIBOSOME 3.10 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,synthetic 3OWI CRYSTAL STRUCTURE OF THE GLYCINE RIBOSWITCH BOUND TO GLYCINE X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 2.85 VIBRIO CHOLERAE MJ-1236,VIBRIO CHOLERAE MJ-1236 2QBJ CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.00 ESCHERICHIA COLI 2M18 STRUCTURE OF STACKED G-QUADRUPLEX FORMED BY HUMAN TERRA SEQUENCE IN POTASSIUM SOLUTION SOLUTION NMR 4-17-13 H.MARTADINATA,A.T.PHAN RNA G-QUADRUPLEX, HUMAN TELOMERIC RNA, STACKED G-QUADRUPLEX, RNA synthetic 1FKA STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION X-RAY DIFFRACTION 9-04-00 F.SCHLUENZEN,A.TOCILJ,R.ZARIVACH,J.HARMS,M.GLUEHMANN, D.JANELL,A.BASHAN,H.BARTELS,I.AGMON,F.FRANCESCHI,A.YONATH S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, RIBOSOME 3.30 THERMUS THERMOPHILUS 3J01 STRUCTURE OF THE RIBOSOME-SECYE COMPLEX IN THE MEMBRANE ENVIRONMENT ELECTRON MICROSCOPY 4-20-11 J.FRAUENFELD,J.GUMBART,E.O.VAN DER SLUIS,S.FUNES,M.GARTMANN, B.BEATRIX,T.MIELKE,O.BERNINGHAUSEN,T.BECKER,K.SCHULTEN,R.BECKMANN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, TRANSLATION, ZINC-FINGER, 70S RIBOSOME, RIBOSOME, TRANSLOCON, SECYEG, NANODISC, RIBOSOME-RIBOSOMAL PROTEIN COMPLEX 7.10 ESCHERICHIA COLI DH1,ESCHERICHIA COLI DH1 3PYN CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 FROM THE PSIV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1SDS STRUCTURE OF PROTEIN L7AE BOUND TO A K-TURN DERIVED FROM AN ARCHAEAL BOX H/ACA SRNA X-RAY DIFFRACTION 5-18-04 T.HAMMA,A.FERRE-D'AMARE PROTEIN-RNA COMPLEX, PROTEIN/RNA COMPLEX COMPLEX 1.80 synthetic 3ND3 UHELIX 16-MER DSRNA X-RAY DIFFRACTION 9-21-11 B.H.MOOERS,A.SINGH DOUBLE-STRANDED RNA, RNA, U-HELIX, OLIGO-U TAIL, POLYU RNA 1.37 synthetic 3MUT CRYSTAL STRUCTURE OF THE G20A/C92U MUTANT C-DI-GMP RIBOSWITH BOUND TO C-DI-GMP X-RAY DIFFRACTION 8-25-10 S.A.STROBEL,K.D.SMITH RNA, RIBOSWITCH, C-DI-GMP, RNA BINDING PROTEIN-RNA COMPLEX 3.00 synthetic 2R1G COORDINATES OF THE THERMUS THERMOPHILUS 30S COMPONENTS NEIGHBORING RBFA AS OBTAINED BY FITTING INTO THE CRYO-EM MAP OF A 30S-RBFA COMPLEX ELECTRON MICROSCOPY 3-18-08 P.P.DATTA,D.N.WILSON,M.KAWAZOE,N.K.SWAMI,T.KAMINISHI, M.R.SHARMA,T.M.BOOTH,C.TAKEMOTO,P.FUCINI,S.YOKOYAMA, R.K.AGRAWAL S RIBOSOME MATURATION PROTEIN RBFA, COLD SHOCK RESPONSE PROTEIN RBFA, 30S-RBFA COMPLEX, RBFA BINDING SITE ON THE 30S, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, ANTIBIOTIC RESISTANCE, RIBOSOMAL PROTEIN/RNA COMPLEX 12.50 THERMUS THERMOPHILUS HB27,synthetic,THERMUS THERMOPHILUS HB27,synthetic,THERMUS THERMOPHILUS HB27,synthetic,synthetic 2A2E CRYSTAL STRUCTURE OF THE RNA SUBUNIT OF RIBONUCLEASE P. BACTERIAL A-TYPE. X-RAY DIFFRACTION 9-06-05 A.TORRES-LARIOS,K.K.SWINGER,A.S.KRASILNIKOV,T.PAN, A.MONDRAGON RNASE P, RIBONUCLEASE P RNA, P RNA, RIBOZYME, TRNA, PRE- TRNA, THERMOTOGA MARITIMA, TETRALOOP-RECEPTOR, T-LOOP, COAXIAL HELICES, RIBOSE ZIPPERS 3.85 synthetic 2XUY TRNA TRANLOCATION ON THE 70S RIBOSOME: THE POST- TRANSLOCATIONAL TRANSLOCATION INTERMEDIATE TI(POST) ELECTRON MICROSCOPY 12-08-10 A.H.RATJE,J.LOERKE,A.MIKOLAJKA,M.BRUENNER,P.W.HILDEBRAND, A.L.STAROSTA,A.DOENHOEFER,S.R.CONNELL,P.FUCINI,T.MIELKE, P.C.WHITFORD,J.ONUCHIC,Y.YU,K.Y.SANBONMATSU,R.K.HARTMANN, P.A.PENCZEK,D.N.WILSON,C.M.T.SPAHN TRANSLATION, RIBOSOME, ELONGATION CYCLE, TRNA TRANSLOCATION 7.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1EQQ SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX X-RAY DIFFRACTION 9-23-03 T.MATSUMOTO,Y.MORIMOTO,N.SHIBATA,N.YASUOKA,N.SHIMAMOTO BETA BARREL, PROTEIN-DNA COMPLEX, REPLICATION/RNA COMPLEX 3.20 synthetic 3J2G DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 16.50 ESCHERICHIA COLI 1YN1 SOLUTION STRUCTURE OF THE VS RIBOZYME STEM-LOOP V IN THE PRESENCE OF MGCL2 SOLUTION NMR 1-24-06 D.O.CAMPBELL,P.LEGAULT U-TURN; HAIRPIN; MAGNESIUM IONS, RNA synthetic 1YYK CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA AT 2.5-ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-22-05 J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI RIBONUCLEASE III, DOUBLE-STRANDED RNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 2.50 synthetic 2QA4 A MORE COMPLETE STRUCTURE OF THE THE L7/L12 STALK OF THE HALOARCULA MARISMORTUI 50S LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 4-01-08 T.A.STEITZ,J.M.KAVRAN LARGE RIBOSOMAL SUBUNIT, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METAL- BINDING, ZINC, ZINC-FINGER, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3OHJ STRUCTURE OF THE THERMUS THERMOPHILUS RIBOSOME COMPLEXED WITH ERYTHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, ERYTHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3OR9 CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CEM-101. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 10-06-10 J.A.DUNKLE,W.ZHANG,J.H.D.CATE,A.S.MANKIN PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ERYTHROMYCIN, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.30 ESCHERICHIA COLI 3DIQ CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO HOMOARGININE X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 2.70 synthetic 2C51 MS2-RNA HAIRPIN (G -5) COMPLEX X-RAY DIFFRACTION 1-05-06 E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, VIRUS COAT PROTEIN, ICOSAHEDRAL VIRUS 2.80 ENTEROBACTERIO PHAGE MS2 1SJF CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN COBALT HEXAMMINE SOLUTION X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 2.75 synthetic 3PF4 CRYSTAL STRUCTURE OF BS-CSPB IN COMPLEX WITH R(GUCUUUA) X-RAY DIFFRACTION 9-21-11 R.SACHS,K.E.A.MAX,U.HEINEMANN BETA BARREL, PROTEIN-RNA COMPLEX, COLD SHOCK RESPONSE, TRANSCRIPTION REGULATION, TRANSLATION REGULATION, OB FOLD, COLD SHOCK DOMAIN, RNA/DNA BINDING, SINGLE-STRANDED RNA AND DNA, CYTOSOL, GENE REGULATION-RNA COMPLEX 1.38 synthetic 2GDI CRYSTAL STRUCTURE OF THIAMINE PYROPHOSPHATE-SPECIFIC RIBOSWITCH IN COMPLEX WITH THIAMINE PYROPHOSPHATE X-RAY DIFFRACTION 7-04-06 A.SERGANOV RIBOSWITCH, THIAMINE PYROPHOSPHATE, RNA 2.05 synthetic 1RNG SOLUTION STRUCTURE OF THE CUUG HAIRPIN: A NOVEL RNA TETRALOOP MOTIF SOLUTION NMR 12-07-95 F.M.JUCKER,A.PARDI RNA, NMR, TETRALOOP synthetic 2L41 NAB3 RRM - UCUU COMPLEX SOLUTION NMR 11-17-10 R.STEFL,R.PERGOLI,F.HOBOR,K.KUBICEK,M.ZIMMERMANN,J.PASULKA,C.HOFR NAB3 RRM, UCUU OLIGONUCLEOTIDE, RNA BINDING PROTEIN-RNA COMPLEX synthetic 3ID5 CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS C/D RNP ASSEMBLED WITH NOP5, FIBRILLARIN, L7AE AND A SPLIT HALF C/D RNA X-RAY DIFFRACTION 8-25-09 K.YE C/D GUIDE RNA, 2'-O-METHYLATION, COILED-COIL, METHYLTRANSFERASE, RNA-BINDING, RRNA PROCESSING, TRANSFERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, SPLICING/TRANSFERASE/RIBOSOMAL PROTEIN/RNA COMPLEX 4.01 synthetic 1DRZ U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX X-RAY DIFFRACTION 2-16-99 A.R.FERRE-D'AMARE,K.ZHOU,J.A.DOUDNA CATALYTIC RNA, RIBOZYME, RNA-BINDING PROTEIN, U1A, HDV, RNA BINDING PROTEIN/RNA COMPLEX 2.30 HEPATITIS DELTA VIRUS 3NVI STRUCTURE OF N-TERMINAL TRUNCATED NOP56/58 BOUND WITH L7AE AND BOX C/D RNA X-RAY DIFFRACTION 7-20-11 H.LI,S.XUE,R.WANG KINK TURN, RIBOSOME BIOGENESIS, TRANSFERASE-RNA COMPLEX 2.71 synthetic 1E8O CORE OF THE ALU DOMAIN OF THE MAMMALIAN SRP X-RAY DIFFRACTION 11-08-00 O.WEICHENRIEDER,K.WILD,K.STRUB,S.CUSACK ALU RIBONUCLEOPROTEIN PARTICLE, PROTEIN RECOGNITION OF AN RNA U-TURN, TRANSLATIONAL CONTROL, ALU RNP ASSEMBLY AND TRANSPORT, ALU RETROPOSITION 3.20 HOMO SAPIENS 1QF6 STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE COMPLEXED WITH ITS COGNATE TRNA X-RAY DIFFRACTION 5-06-99 R.SANKARANARAYANAN,A.C.DOCK-BREGEON,B.REES,D.MORAS THREONYL-TRNA SYNTHETASE, TRNA(THR), AMP, ZINC, MRNA, AMINOACYLATION, TRANSLATIONAL REGULATION, PROTEIN/RNA, LIGASE/RNA COMPLEX 2.90 ESCHERICHIA COLI 1LUX NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40) SOLUTION NMR 9-09-03 J.W.STUART,K.M.KOSHLAP,R.H.GUENTHER,P.F.AGRIS TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, 2'-O- METHYL, M5C synthetic 3B58 MINIMALLY JUNCTIONED HAIRPIN RIBOZYME INCORPORATES A38G MUTATION AND A 2',5'-PHOSPHODIESTER LINKAGE AT THE ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME; 2', 5' PHOSPHODIESTER, RNA 2.65 synthetic,synthetic,synthetic 4A3B RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 4NT DNA-RNA HYBRID X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.50 SACCHAROMYCES CEREVISIAE 1SA9 CRYSTAL STRUCTURE OF THE RNA OCTAMER GGCGAGCC X-RAY DIFFRACTION 5-18-04 S.B.JANG,K.BAEYENS,M.S.JEONG,J.SANTALUCIA JR,D.TURNER, S.R.HOLBROOK RNA DOUBLE HELIX, RNA TANDEM G-A BASE PAIR 2.86 synthetic 3GTP BACKTRACKED RNA POLYMERASE II COMPLEX WITH 24MER RNA X-RAY DIFFRACTION 6-09-09 D.WANG,D.A.BUSHNELL,X.HUANG,K.D.WESTOVER,M.LEVITT, R.D.KORNBERG TRANSCRIPTION, TRANSFERASE, DNA-RNA HYBRID, BACKTRACK, DNA- DIRECTED RNA POLYMERASE, DNA BINDING, ISOPEPTIDE BOND, MAGNESIUM, METAL BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.90 synthetic 4IQS RNA 8MER DUPLEX MODIFIED WITH 4-SE-URIDINE X-RAY DIFFRACTION 12-25-13 J.SHENG,J.GAN,A.SOARES,Z.HUANG SELENIUM RNA, RNA 2.60 synthetic 3ZP8 HIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYME X-RAY DIFFRACTION 3-06-13 M.ANDERSON,E.SCHULTZ,M.MARTICK,W.G.SCOTT RNA, CATALYTIC RNA 1.55 SYNTHETIC CONSTRUCT 3UZS STRUCTURE OF THE C13.28 RNA APTAMER BOUND TO THE G PROTEIN-COUPLED RECEPTOR KINASE 2-HETEROTRIMERIC G PROTEIN BETA 1 AND GAMMA 2 SUBUNIT COMPLEX X-RAY DIFFRACTION 7-11-12 J.J.G.TESMER,V.M.TESMER PROTEIN-RNA COMPLEX, PROTEIN KINASE FOLD, RGS HOMOLOGY DOMAIN, PLECKSTRIN HOMOLOGY DOMAIN, BETA PROPELLER, G PROTEIN-COUPLED RECEPTOR PHOSPHORYLATION, RNA APTAMER, CARBOXYMETHYLATION, GERANYLGERANYLATION, TRANSFERASE-RNA COMPLEX 4.52 synthetic 1HYS CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA X-RAY DIFFRACTION 3-26-01 S.G.SARAFIANOS,K.DAS,C.TANTILLO,A.D.CLARK JR.,J.DING, J.WHITCOMB,P.L.BOYER,S.H.HUGHES,E.ARNOLD POLYPURINE TRACT, PPT, PROTEIN-NUCLEIC ACID COMPLEX, RNASE H, RNA:DNA, UNPAIRED BASE, RNASE H PRIMER GRIP, TRANSFERASE/DNA/RNA COMPLEX, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.00 synthetic 1YKQ CRYSTAL STRUCTURE OF DIELS-ALDER RIBOZYME X-RAY DIFFRACTION 2-22-05 A.SERGANOV,S.KEIPER,L.MALININA,V.TERESHKO,E.SKRIPKIN, C.HOBARTNER,A.POLONSKAIA,A.T.PHAN,R.WOMBACHER,R.MICURA, Z.DAUTER,A.JASCHKE,D.J.PATEL CARBON-CARBON BOND, CATALYTIC MECHANISM, RNA CRYSTAL STRUCTURE, DIELS-ALDER REACTION, RIBOZYME 3.50 synthetic,synthetic 4FY1 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 1NJP THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM) X-RAY DIFFRACTION 2-11-03 A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS, R.BERISIO,H.BARTELS,H.A.HANSEN,A.YONATH RIBOSOMES, TRNA, PUROMYCIN, SPARSOMYCIN, PEPTIDYL- TRANSFERASE, PEPTIDE BOND FORMATION 3.50 DEINOCOCCUS RADIODURANS,synthetic 1QTQ GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG X-RAY DIFFRACTION 5-27-98 V.L.RATH,L.F.SILVIAN,B.BEIJER,B.S.SPROAT,T.A.STEITZ TRNA SYNTHETASE, GLUTAMINE, TRNAGLN, E. COLI, COMPLEX, LIGASE/RNA COMPLEX 2.25 ESCHERICHIA COLI 3BX3 PUF4 T650C/C724R MUTANT BOUND TO COX17 RNA 3' UTR RECOGNITION SEQUENCE X-RAY DIFFRACTION 3-11-08 M.T.MILLER,J.J.HIGGIN,T.M.T.HALL PUF4, PUMILIO, RNA BINDING, HO ENDONUCLEASE, PUF4 T650C C724R MUTANT, TRANSCRIPTION, RNA BINDING PROTEIN/RNA COMPLEX 3.00 synthetic 4GPY CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING SITE IN COMPLEX WITH 6'-HYDROXYSISOMICIN X-RAY DIFFRACTION 4-03-13 J.KONDO,M.KOGANEI,J.P.MAIANTI,V.L.LY,S.HANESSIAN RIBOSOME, AMINOGLYCOSIDE, RNA-ANTIBIOTIC COMPLEX, ANTIPROTOZOAL ACTIVITY, ANTIBACTERIAL ACTIVITY 2.80 synthetic 1IL2 CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE:YEAST TRNAASP:ASPARTYL-ADENYLATE COMPLEX X-RAY DIFFRACTION 9-28-01 L.MOULINIER,S.EILER,G.ERIANI,J.GANGLOFF,J.C.THIERRY, K.GABRIEL,W.H.MCCLAIN,D.MORAS PROTEIN-RNA COMPLEX, LIGASE/RNA COMPLEX 2.60 SACCHAROMYCES CEREVISIAE 2BQ5 MS2 (N87AE89K MUTANT) - RNA HAIRPIN COMPLEX X-RAY DIFFRACTION 3-22-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, VIRUS COAT PROTEIN, ICOSAHEDRAL VIRUS 2.91 BACTERIOPHAGE MS2 3CCV STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2616A X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL G2616A MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, RIBOSOME 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2NQP CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA X-RAY DIFFRACTION 5-15-07 S.HUR,R.M.STROUD PSEUDOURIDINE SYNTHASE, ANTICODON STEM LOOP, TRNA, MULTISITE SPECIFICITY, ISOMERASE/RNA COMPLEX 3.50 synthetic 1QRU GLUTAMINYL-TRNA SYNTHETASE MUTANT I129T COMPLEXED WITH GLUTAMINE TRANSFER RNA X-RAY DIFFRACTION 12-07-96 J.G.ARNEZ,T.A.STEITZ AMINOACYL-TRNA SYNTHASE, PROTEIN BIOSYNTHESIS, LIGASE, ATP- B, COMPLEX (AMINOACYL-TRNA SYNTHASE/TRNA), LIGASE/RNA COMPLEX 3.00 ESCHERICHIA COLI 1FHK NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI SOLUTION NMR 3-21-01 S.V.MOROSYUK,P.R.CUNNINGHAM,J.SANTALUCIA JR. LOOP OF 16S, RIBOSOMAL RNA, NMR synthetic 3IZW STRUCTURAL INSIGHTS INTO COGNATE VS. NEAR-COGNATE DISCRIMINATION DURING DECODING.THIS ENTRY CONTAINS THE SMALL SUBUNIT OF A RIBOSOME PROGRAMMED WITH A COGNATE CODON, A/T-SITE TRNA, P-SITE TRNA, MRNA AND EF-TU ELECTRON MICROSCOPY 3-23-11 X.AGIRREZABALA,E.SCHREINER,L.G.TRABUCO,J.LEI,R.F.ORTIZ-MEOZ, K.SCHULTEN,R.GREEN,J.FRANK TRANSLATION, RIBOSOME, TERNARY COMPLEX, TRNA INCORPORATION, CRYOEM, NEAR-COGNATE 10 ESCHERICHIA COLI DH1,ESCHERICHIA COLI DH1,ESCHERICHIA COLI 3DW6 CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA, U2650-SECH3 MODIFIED X-RAY DIFFRACTION 3-24-09 V.OLIERIC,U.RIEDER,K.LANG,A.SERGANOV,C.SCHULZE-BRIESE,R.MICURA, P.DUMAS,E.ENNIFAR RNA, SARCIN RICIN LOOP 1.00 synthetic 2ZJQ INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT X-RAY DIFFRACTION 6-17-08 J.M.HARMS,D.N.WILSON,F.SCHLUENZEN,S.R.CONNELL,T.STACHELHAUS, Z.ZABOROWSKA,C.M.T.SPAHN,P.FUCINI RIBOSOME, RIBOSOMAL SUBUNIT, 50S, THIOPEPTIDE ANTIBIOTICS, COMPLEX, TRANSLATIONAL REGULATION, L11, MOLECULAR SWITCH, L7, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC, ZINC-FINGER 3.30 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3UCZ THE C-DI-GMP-I RIBOSWITCH BOUND TO GPG X-RAY DIFFRACTION 1-04-12 K.D.SMITH,S.A.STROBEL RIBOSWITCH, SIGNALING PROTEIN-RNA COMPLEX 2.80 synthetic,synthetic 4A2I CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE 30S SUBUNIT IN COMPLEX WITH THE YJEQ BIOGENESIS FACTOR ELECTRON MICROSCOPY 11-02-11 A.JOMAA,G.STEWART,J.A.MEARS,I.KIREEVA,E.D.BROWN,J.ORTEGA RIBOSOME-HYDROLASE COMPLEX, RIBOSOME ASSEMBLY 16.50 ESCHERICHIA COLI 1HS1 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF HAIRPIN R(GCGUUAACUCGCA) SOLUTION NMR 9-02-03 H.ZHANG,M.CULYBA,H.VOLKMAN,T.R.KRUGH RIBONUCLEIC ACID, HAIRPIN LOOP, RNA STRUCTURE synthetic 2QBB CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.54 ESCHERICHIA COLI 3J4Z E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE PRE- TRANSLOCATION STATE (PRE2, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 20.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3HSB CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH AN RNA APTAMER X-RAY DIFFRACTION 6-23-10 S.BABA,T.SOMEYA,T.KUMASAKA,G.KAWAI,K.NAKAMURA SM-LIKE MOTIF, PROTEIN-RNA COMPLEX, RNA-BINDING, STRESS RESPONSE, RNA BINDING PROTEIN-RNA COMPLEX 2.20 synthetic 1SZ1 MECHANISM OF CCA-ADDING ENZYMES SPECIFICITY REVEALED BY CRYSTAL STRUCTURES OF TERNARY COMPLEXES X-RAY DIFFRACTION 8-10-04 Y.XIONG,T.A.STEITZ CCA-ADDING ENZYME, SPECIFICITY, TRNA, COMPLEX, TRANSFERASE/RNA COMPLEX 6.21 synthetic 3J54 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE- TRANSLOCATION STATE (PRE4, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 13.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3NPN STRUCTURE OF THE S-ADENOSYLHOMOCYSTEINE RIBOSWITCH AT 3.0A X-RAY DIFFRACTION 10-06-10 F.E.REYES,A.E.EDWARDS,R.T.BATEY RNA, RIBOSWITCH, S-ADENOSYL-HOMOCYSTEINE 2.79 RALSTONIA SOLANACEARUM 1RRD DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH RNA STRAND, NMR, 10 STRUCTURES SOLUTION NMR 4-22-98 J.I.GYI,A.N.LANE,G.L.CONN,T.BROWN DNA/RNA HYBRID, PURINE/PYRIMIDINE-RICH STRANDS, ANTISENSE, DNA-RNA HYBRID synthetic 1P5N SOLUTION STRUCTURE OF HCV IRES DOMAIN IIB SOLUTION NMR 11-04-03 P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, LOOP E MOTIF, HAIRPIN LOOP synthetic 2PN9 NMR STRUCTURE OF A KISSING COMPLEX FORMED BETWEEN THE TAR RNA ELEMENT OF HIV-1 AND A LNA MODIFIED APTAMER SOLUTION NMR 10-30-07 I.LEBARS,T.RICHARD,C.DI PRIMO,J.-J.TOULME RNA; LNA; LOCKED NUCLEIC ACID; NMR; APTAMER; TAR; HIV-1; KISSING synthetic,synthetic 2XDB A PROCESSED NON-CODING RNA REGULATES A BACTERIAL ANTIVIRAL SYSTEM X-RAY DIFFRACTION 1-12-11 T.R.BLOWER,X.Y.PEI,F.L.SHORT,P.C.FINERAN,D.P.HUMPHREYS,B.F.LUISI, G.P.C.SALMOND TOXIN-RNA COMPLEX, ABORTIVE INFECTION, PHAGE 2.55 PECTOBACTERIUM ATROSEPTICUM 1CVJ X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA X-RAY DIFFRACTION 10-04-99 R.C.DEO,J.B.BONANNO,N.SONENBERG,S.K.BURLEY RRM, PROTEIN-RNA COMPLEX, GENE REGULATION-RNA COMPLEX 2.60 synthetic 4K0Q CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 70S CONTAINING TRNAS AND MRNA STOP CODON WITH PSEUDOURIDINE X-RAY DIFFRACTION 7-03-13 I.S.FERNANDEZ,C.L.NG,A.C.KELLEY,W.GUOWEI,Y.T.YU,V.RAMAKRISHNAN RIBOSOMAL SUBUNIT, TRANSLATION, RIBOSOME 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1FG0 LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX- PUROMYCIN COMPOUND X-RAY DIFFRACTION 8-28-00 P.NISSEN,J.HANSEN,N.BAN,P.B.MOORE,T.A.STEITZ RIBOSOME ASSEMBLY, RNA-RNA, RIBOZYME, A-SITE 3.00 HALOARCULA MARISMORTUI,synthetic 1EMI STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMAL PROTEIN S8. X-RAY DIFFRACTION 6-12-00 L.LANCASTER,G.M.CULVER,G.Z.YUSUPOVA,J.H.CATE,M.M.YUSPOV, H.F.NOLLER RNA, RRNA, RIBOSOME, RIBOSOMAL PROTEIN, 16S RRNA, S8 7.50 THERMUS THERMOPHILUS 3OI0 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH AZITHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, AZITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS 2G5Q CRYSTAL STRUCTURES OF THE BACTERIAL RIBOSOMAL DECODING SITE COMPLEXED WITH AMIKACIN. X-RAY DIFFRACTION 10-03-06 J.KONDO,B.FRANCOIS,R.J.M.RUSSELL,J.B.MURRAY,E.WESTHOF AMINOGLYCOSIDE, HABA GROUP, RIBOSOMAL DECODING SITE, X-RAY ANALYSIS, RNA, AMIKACIN 2.70 synthetic 2XS7 CRYSTAL STRUCTURE OF THE RRM DOMAIN OF MOUSE DELETED IN AZOOSPERMIA-LIKE IN COMPLEX WITH SYCP3 RNA, UUGUUU X-RAY DIFFRACTION 10-05-11 H.T.JENKINS,T.A.EDWARDS RNA BINDING PROTEIN-RNA COMPLEX, TRANSLATION REGULATION 1.45 MUS MUSCULUS 3V23 CRYSTAL STRUCTURE OF RMF BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 50S SUBUNIT OF THE 1ST RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME MODULATION FACTOR, STRESS RESPONSE, SMALL SUBUNIT HEAD MOVEMENT, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1E7K CRYSTAL STRUCTURE OF THE SPLICEOSOMAL 15.5KD PROTEIN BOUND TO A U4 SNRNA FRAGMENT X-RAY DIFFRACTION 2-19-01 I.VIDOVIC,S.NOTTROTT,K.HARTHMUTH,R.LUHRMANN,R.FICNER RNA-BINDING PROTEIN, SPLICING, RNA RECOGNITION MOTIF, U4 SNRNA 2.9 HOMO SAPIENS 157D CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS X-RAY DIFFRACTION 5-31-94 G.A.LEONARD,K.E.MCAULEY-HECHT,S.EBEL,D.M.LOUGH,T.BROWN, W.N.HUNTER A-RNA, DOUBLE HELIX, MISMATCHED 1.80 synthetic 2QKK HUMAN RNASE H CATALYTIC DOMAIN MUTANT D210N IN COMPLEX WITH 14-MER RNA/DNA HYBRID X-RAY DIFFRACTION 11-13-07 M.NOWOTNY,S.A.GAIDAMAKOV,R.GHIRLANDO,S.M.CERRITELLI, R.J.CROUCH,W.YANG RNASE H; RNA/DNA HYBRID, HYDROLASE/DNA/RNA COMPLEX 3.20 HOMO SAPIENS 2B7G STRUCTURE OF THE SMAUG RECOGNITION RNA ELEMENT SOLUTION NMR 1-24-06 P.E.JOHNSON,L.W.DONALDSON RNA, PROTEIN-RNA COMPLEX synthetic 4ENA CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, SOAKED IN CS+ X-RAY DIFFRACTION 5-09-12 A.R.REN,K.R.RAJASHANKAR,D.J.PATEL PSEUDOKNOT, RNA 2.85 THERMOTOGA PETROPHILA 2R1S STRUCTURE OF THE RNA BROMINATED TRIDECAMER R(GCGUU- 5BUGAAACGC) AT 1.4 A (BR1) X-RAY DIFFRACTION 9-25-07 Y.TIMSIT,S.BOMBARD ASYMMETRY, ELECTROSTATIC, MONOVALENT CATIONS, STRUCTURAL PLASTICITY, RNA 1.40 synthetic 2XXA THE CRYSTAL STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE (SRP) IN COMPLEX WITH ITS RECEPTOR(SR) X-RAY DIFFRACTION 3-02-11 S.F.ATAIDE,N.SCHMITZ,K.SHEN,A.KE,S.SHAN,J.A.DOUDNA,N.BAN PROTEIN TRANSPORT, RNA/RNA BINDING PROTEIN, HYDROLASE, GTPASE, 3.94 DEINOCOCCUS RADIODURANS 2ZJR REFINED NATIVE STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 6-17-08 J.M.HARMS,D.N.WILSON,F.SCHLUENZEN,S.R.CONNELL,T.STACHELHAUS, Z.ZABOROWSKA,C.M.T.SPAHN,P.FUCINI RIBOSOME, LARGE RIBOSOMAL SUBUNIT, 50S, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC, ZINC-FINGER 2.91 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3J5B E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST2A, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3OIJ CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE NEP1/EMG1 BOUND TO S- ADENOSYLHOMOCYSTEINE AND 2 MOLECULES OF COGNATE RNA X-RAY DIFFRACTION 12-01-10 S.R.THOMAS,N.LARONDE-LEBLANC EMG1, SCNEP1, SPOUT, RIBOSOME BIOGENESIS, METHYLTRANSFERASE, RRNA PROCESSING, RIBOSOMAL PROTEIN 3.00 synthetic 2FZ2 STRUCTURE OF TURNIP YELLOW MOSAIC VIRUS AT 100 K X-RAY DIFFRACTION 2-21-06 S.B.LARSON,R.W.LUCAS,A.MCPHERSON PLANT VIRUS, COAT PROTEIN, CAPSID PROTEIN, TYMOVIRUSES, TYMV, RNA, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.90 TURNIP YELLOW MOSAIC VIRUS 1WPU CRYSTAL STRUCTURE OF THE HUTP ANTITERMINATION COMPLEX BOUND TO A SINGLE STRANDED REGION OF HUT MRNA X-RAY DIFFRACTION 8-30-05 T.S.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR HUTP, RNA BINDING, HUTP-RNA COMPLEX, ANTITERMINATION, TRANSCRIPTION REGULATION, TRANSCRIPTION/RNA COMPLEX 1.48 synthetic 2KUV SOLUTION STRUCTURE OF K10 TLS RNA (GC MUTANT IN LOWER HELIX) SOLUTION NMR 5-19-10 S.L.BULLOCK,I.RINGEL,D.ISH-HOROWICZ,P.J.LUKAVSKY RNA TRANSPORT, RNA HAIRPIN, RNA DROSOPHILA MELANOGASTER 1QZW CRYSTAL STRUCTURE OF THE COMPLETE CORE OF ARCHAEAL SRP AND IMPLICATIONS FOR INTER-DOMAIN COMMUNICATION X-RAY DIFFRACTION 11-18-03 K.R.ROSENDAL,K.WILD,G.MONTOYA,I.SINNING SIGNAL RECOGNITION PARTICLE, SRP, RIBONUCLEOPROTEIN COMPLEX, PROTEIN- RNA COMPLEX, PROTEIN TARGETING, SIGNALING PROTEIN-RNA COMPLEX 4.10 SULFOLOBUS SOLFATARICUS 1MT4 STRUCTURE OF 23S RIBOSOMAL RNA HAIRPIN 35 SOLUTION NMR 1-14-03 I.LEBARS,S.YOSHIZAWA,A.R.STENHOLM,E.GUITTET,S.DOUTHWAITE, D.FOURMY RNA HAIRPIN, RIBOSOMAL RNA, U-TURN synthetic 4NKU STRUCTURE OF CID1 IN COMPLEX WITH ITS SHORT PRODUCT APU X-RAY DIFFRACTION 12-18-13 P.MUNOZ-TELLO,C.GABUS,S.THORE POLY(U) POLYMERASE, NUCLEOTIDYL TRANFER DOMAIN, PAP-ASSOCIATED DOMAIN, UTP BINDING, TRANSFERASE-RNA COMPLEX 1.94 synthetic 3WFS TRNA PROCESSING ENZYME COMPLEX 3 X-RAY DIFFRACTION 1-01-14 S.YAMASHITA,D.TAKESHITA,K.TOMITA TERMINAL NUCLEOTIDE TRANSFERASE, TRANSFERASE-RNA COMPLEX 3.31 THERMOTOGA MARITIMA MSB8 2DR2 STRUCTURE OF HUMAN TRYPTOPHANYL-TRNA SYNTHETASE IN COMPLEX WITH TRNA(TRP) X-RAY DIFFRACTION 7-11-06 N.SHEN,L.GUO,B.YANG,Y.JIN,J.DING ROSSMANN FOLD, LIGASE/RNA COMPLEX 3.00 BOS TAURUS 1T0D CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA X-RAY DIFFRACTION 6-15-04 S.SHANDRICK,Q.ZHAO,Q.HAN,B.K.AYIDA,M.TAKAHASHI,G.C.WINTERS, K.B.SIMONSEN,D.VOURLOUMIS,T.HERMANN CRYSTAL STRUCTURE, 2-AMINOPURINE, BACTERIAL DECODING SITE RNA, FLUORESCENCE EMISSION SPECTRA, 9-BETA-D-RIBOFURANOSYL- 9H-PURIN-2-AMINE 2.20 synthetic,synthetic 3KIS STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (PRECLEAVAGE STATE; PART 3 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,K.R.ANDERSEN,C.M.DUNHAM,A.C.KELLEY, J.HENTSCHEL,K.GERDES,V.RAMAKRISHNAN,D.E.BRODERSEN RIBOSOME, RELE, NUCLEASE, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL- BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, REPRESSOR, STRESS RESPONSE, TOXIN, TRANSLATION, TRANSLATION REGULATION 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic 1GSG STRUCTURE OF E.COLI GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNAGLN AND ATP AT 2.8 ANGSTROMS RESOLUTION X-RAY DIFFRACTION 4-03-90 M.A.ROULD,J.J.PERONA,D.SOELL,T.A.STEITZ PROTEIN-T-RNA COMPLEX, SINGLE STRAND, PROTEIN/RNA, LIGASE/RNA COMPLEX 2.80 synthetic 1F79 SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, C70U MUTANT, METAL BINDING SITE, METAL COMPLEX, COBALT (III) HEXAMMINE COMPLEX synthetic 2OM7 STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS ELECTRON MICROSCOPY 1-15-08 S.R.CONNELL,D.N.WILSON,M.ROST,M.SCHUELER,J.GIESEBRECHT, M.DABROWSKI,T.MIELKE,P.FUCINI,C.M.T.SPAHN RNA-PROTEIN COMPLEX, RIBOSOME 7.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4N2Q CRYSTAL STRUCTURE OF THA8 IN COMPLEX WITH ZM4 RNA X-RAY DIFFRACTION 10-30-13 J.KE,R.Z.CHEN,T.BAN,X.E.ZHOU,X.GU,J.S.BRUNZELLE,J.K.ZHU,K.MELCHER, H.E.XU PENTATRICOPEPTIDE REPEAT (PPR) PROTEIN, GROUP II INTRON RNA SPLICING, SMALL INTRON RNA, CHLOROPLAST, SPLICING-RNA COMPLEX 2.80 synthetic 3KNL THE STRUCTURES OF CAPREOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT FOR MOLECULE I X-RAY DIFFRACTION 2-23-10 R.E.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, CAPREOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.45 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,ESCHERICHIA COLI,PECTOBACTERIUM WASABIAE WPP163,synthetic 1K5I NMR STRUCTURE OF A RIBOSOMAL RNA HAIRPIN CONTAINING A CONSERVED CUCAA PENTALOOP SOLUTION NMR 10-17-01 U.NAGASWAMY,X.GAO,S.A.MARTINIS,G.E.FOX CUCAA PENTALOOP, RNA HAIRPIN, NON STANDARD BASE-BASE INTERACTION synthetic 1ZDJ STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX X-RAY DIFFRACTION 7-08-98 E.GRAHN,N.STONEHOUSE,K.VALEGARD,S.VANDENWORM,L.LILJAS COAT PROTEIN/RNA COMPLEX, COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.90 ENTEROBACTERIO PHAGE MS2 3IZD MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME. 3IZD IS A SMALL PART (AN EXPANSION SEGMENT) WHICH IS IN AN ALTERNATIVE CONFORMATION TO WHAT IS IN ALREADY 3IZF. ELECTRON MICROSCOPY 12-01-10 J.-P.ARMACHE,A.JARASCH,A.M.ANGER,E.VILLA,T.BECKER,S.BHUSHAN, F.JOSSINET,M.HABECK,G.DINDAR,S.FRANCKENBERG,V.MARQUEZ,T.MIELKE, M.THOMM,O.BERNINGHAUSEN,B.BEATRIX,J.SOEDING,E.WESTHOF,D.N.WILSON, R.BECKMANN EUKARYOTIC RIBOSOME, HOMOLOGY MODELLING, DE NOVO MODELING, RIBOSOMAL RNA, RRNA, RNA EXPANSION SEGMENTS, RIBOSOME 10 SACCHAROMYCES CEREVISIAE 1HVU HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE COMPLEXED WITH A 33-BASE NUCLEOTIDE RNA PSEUDOKNOT X-RAY DIFFRACTION 1-13-99 J.JAEGER,T.RESTLE,T.A.STEITZ COMPLEX (NUCLEOTIDYLTRANSFERASE/RNA), HYDROLASE, ASPARTYL PROTEASE, ENDONUCLEASE 4.75 synthetic 1TRA RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES X-RAY DIFFRACTION 5-16-86 E.WESTHOF,M.SUNDARALINGAM T-RNA, SINGLE STRAND, LOOPS 3.00 SACCHAROMYCES CEREVISIAE 1C2W S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION ELECTRON MICROSCOPY 4-10-00 R.BRIMACOMBE,F.MUELLER S RRNA, RIBOSOME, LARGE RIBOSOMAL SUBUNIT, ATOMIC PROTEIN BIOSYNTHESIS, RIBONUCLEIC ACID, EM-RECONSTRUCTION, STRUCTURE, 3D ARRANGEMENT, FITTING 7.50 ESCHERICHIA COLI 3P49 CRYSTAL STRUCTURE OF A GLYCINE RIBOSWITCH FROM FUSOBACTERIUM NUCLEATUM X-RAY DIFFRACTION 4-06-11 E.B.BUTLER,J.WANG,Y.XIONG,S.STROBEL RIBOSWITCH, RNA, COOPERATIVE, GLYCINE, RNA BINDING PROTEIN-RNA COMPLEX 3.55 synthetic 1AJF SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 7-07-97 J.S.KIEFT,I.TINOCO JUNIOR RIBONUCLEIC ACID, COBALT (III) HEXAMMINE, METAL BINDING, NMR, RNA STRUCTURE synthetic 3JYX STRUCTURE OF THE 60S RRNA FOR EUKARYOTIC RIBOSOME BASED ON CRYO-EM MAP OF THERMOMYCES LANUGINOSUS RIBOSOME AT 8.9A RESOLUTION ELECTRON MICROSCOPY 12-22-09 D.J.TAYLOR,B.DEVKOTA,A.D.HUANG,M.TOPF,E.NARAYANAN,A.SALI,S.C.HARVEY, J.FRANK EUKARYOTIC RIBOSOME, 80S, RACK1 PROTEIN, FLEXIBLE FITTING, RIBOSOME 8.90 THERMOMYCES LANUGINOSUS,THERMOMYCES LANUGINOSUS,THERMOMYCES LANUGINOSUS 4KIX CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, ELONGATION FACTOR G 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 2ET8 COMPLEX BETWEEN NEAMINE AND THE 16S-RRNA A-SITE X-RAY DIFFRACTION 12-13-05 E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.50 synthetic 1I6U RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII X-RAY DIFFRACTION 8-03-01 S.TISHCHENKO,A.NIKULIN,N.FOMENKOVA,N.NEVSKAYA,O.NIKONOV, P.DUMAS,H.MOINE,B.EHRESMANN,C.EHRESMANN,W.PIENDL,V.LAMZIN, M.GARBER,S.NIKONOV PROTEIN-RNA INTERACTIONS, RIBOSOME, RIBOSOMAL PROTEIN S8, RNA, X-RAY CRYSTALLOGRAPHY 2.60 synthetic 2L8W R(CCGCUGCGG)2 UU INTERNAL LOOP FOUND IN MYOTONIC DYSTROPHY TYPE 1 - UU PAIR WITH TWO HYDROGEN BOND PAIRS SOLUTION NMR 2-23-11 R.PARKESH,M.FOUNTAIN,M.DISNEY UU MISMATCH, RNA synthetic 3AL0 CRYSTAL STRUCTURE OF THE GLUTAMINE TRANSAMIDOSOME FROM THERMOTOGA MARITIMA IN THE GLUTAMYLATION STATE. X-RAY DIFFRACTION 9-29-10 T.ITO,S.YOKOYAMA PROTEIN-RNA COMPLEX, LIGASE-RNA COMPLEX 3.37 synthetic 422D '-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3' X-RAY DIFFRACTION 6-03-03 S.ESWARAMOORTHY,S.T.RAO,M.SUNDARALINGAM DOUBLE HELIX, RNA 2.60 engineered 3R1C CRYSTAL STRUCTURE OF GCGGCGGC DUPLEX X-RAY DIFFRACTION 6-01-11 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI CGG REPEATS, FRAGILE X MENTAL RETARDATION, RNA 2.05 synthetic 4JZU CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS PYROPHOSPHOHYDROLASE BSRPPH BOUND TO A NON-HYDROLYSABLE TRIPHOSPHORYLATED DINUCLEOTIDE RNA (PCP- PGPG) - FIRST GUANOSINE RESIDUE IN GUANOSINE BINDING POCKET X-RAY DIFFRACTION 5-08-13 J.PITON,V.LARUE,Y.THILLIER,A.DORLEANS,O.PELLEGRINI,I.LI DE LA SIERRA- GALLAY,J.J.VASSEUR,F.DEBART,C.TISNE,C.CONDON NUDIX HYDROLASE, RNA PYROPHOSPHOHYDROLASE, RPPH, CYTOSOL, HYDROLASE, HYDROLASE-RNA COMPLEX 1.70 synthetic 1NB7 HC-J4 RNA POLYMERASE COMPLEXED WITH SHORT RNA TEMPLATE STRAND X-RAY DIFFRACTION 3-25-03 D.J.O'FARRELL,R.TROWBRIDGE,D.J.ROWLANDS,J.JAEGER HEPATITIS C VIRUS, REPLICATION, RNA POLYMERASE, DE-NOVO PRIMING, CRYSTAL STRUCTURE, FUNCTION ANALYSIS, HCV, NS5B, RDRP, TRANSFERASE/RNA COMPLEX 2.90 synthetic 2HT1 THE CLOSED RING STRUCTURE OF THE RHO TRANSCRIPTION TERMINATION FACTOR IN COMPLEX WITH NUCLEIC ACID IN THE MOTOR DOMAINS X-RAY DIFFRACTION 11-14-06 E.SKORDALAKES,J.M.BERGER ATPASE, TRANSLOCASE, HYDROLASE/RNA COMPLEX 3.51 synthetic,synthetic 4HT8 CRYSTAL STRUCTURE OF E COLI HFQ BOUND TO POLY(A) A7 X-RAY DIFFRACTION 4-17-13 W.W.WANG,L.J.WANG HFQ, POLY(A), SM FOLD, RNA CHAPERONE, SINGLE STRANDED RNA, CYTOPLASMIC, RNA BINDING PROTEIN-RNA COMPLEX 1.90 HOMO SAPIENS 4FEP CRYSTAL STRUCTURE OF THE A24U/U25A/A46G/C74U MUTANT XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN IN COMPLEX WITH 2,6-DIAMINOPURINE X-RAY DIFFRACTION 2-27-13 C.D.STODDARD,J.J.TRAUSCH,J.WIDMANN,J.MARCANO,R.KNIGHT,R.T.BATEY THREE-WAY JUNCTION WITH DISTAL TERTIARY INTERACTION, GENETIC REGULATORY ELEMENT, 2,6-DIAMINOPURINE, RNA 1.65 synthetic 4KFL CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND WITH THE Q253P MUTANT OF RELEASE FACTOR RF2. 50S OF THE B SUBUNIT X-RAY DIFFRACTION 7-03-13 N.SANTOS,J.ZHU,J.P.DONOHUE,A.A.KOROSTELEV,H.F NOLLER RIBOSOME, RELEASE FACTOR 2 MUTANT 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2OIH HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR WITH C75U MUTATION AND BOUND TO MONOVALENT CATION TL+ X-RAY DIFFRACTION 3-27-07 A.KE,F.DING,J.D.BATCHELOR,J.A.DOUDNA TL+-BOUND, STRUCTURAL PROTEIN/RNA COMPLEX 2.40 synthetic 2QAL CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.21 ESCHERICHIA COLI 1NLC HIV-1 DIS(MAL) DUPLEX ZN-SOAKED X-RAY DIFFRACTION 5-13-03 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, RNA, ZINC 1.85 synthetic 2DVI COMPLEX STRUCTURE OF CCA-ADDING ENZYME, MINI-DCC AND CTP X-RAY DIFFRACTION 11-14-06 K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.61 synthetic 466D DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX X-RAY DIFFRACTION 8-16-99 U.MUELLER,Y.A.MULLER,R.HERBST-IRMER,M.SPRINZL,U.HEINEMANN BASE-PAIR TRNA ALA ACCEPTOR STEM, DOUBLE HELIX, RIBONUCLEIC ACID, DISORDERED MODEL 1.16 synthetic,synthetic 2PXB VARIANT 2 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.00 ESCHERICHIA COLI 4G5W CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TIGECYCLINE. THIS ENTRY CONTAINS THE 50S SUBUNIT OF MOLECULE B. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 439D '-R(*CP*UP*GP*GP*GP*CP*GP*G)-3', 5'- R(*CP*CP*GP*CP*CP*UP*GP*G)-3' X-RAY DIFFRACTION 9-14-01 M.PERBANDT,S.LORENZ,M.VALLAZZA,V.A.ERDMANN,C.BETZEL FRAGMENT OF 5S RRNA, A-RNA 1.60 synthetic,synthetic 1KOC RNA APTAMER COMPLEXED WITH ARGININE, NMR SOLUTION NMR 8-17-96 Y.S.YANG,M.KOCHOYAN,P.BURGSTALLER,E.WESTHOF,M.FAMULOK COMPLEX (RNA APTAMER/PEPTIDE), IN VITRO SELECTED RNA, RNA APTAMER synthetic,synthetic 2XLJ CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, HEXAGONAL FORM X-RAY DIFFRACTION 9-22-10 R.E.HAURWITZ,M.JINEK,B.WIEDENHEFT,K.ZHOU,J.A.DOUDNA HYDROLASE-RNA COMPLEX, ENDORIBONUCLEASE, CRISPR 2.60 PSEUDOMONAS AERUGINOSA 2O3W CRYSTAL STRUCTURE OF THE HOMO SAPIENS CYTOPLASMIC RIBOSOMAL DECODING SITE IN PRESENCE OF PAROMOMYCIN X-RAY DIFFRACTION 11-06-07 J.KONDO,M.HAINRICHSON,I.NUDELMAN,D.SHALLOM-SHEZIFI,T.BAASOV, E.WESTHOF AMINOGLYCOSIDE, ANTIBIOTICS, RIBOSOME, DECODING SITE, HOMO SAPIENS, EUKARYOTE, CYTOPLASMIC, TRANSLATION INHIBITION, STOP CODON READTHROUGH, UNSPECIFIC BINDING, RNA 2.80 synthetic 1MHK CRYSTAL STRUCTURE ANALYSIS OF A 26MER RNA MOLECULE, REPRESENTING A NEW RNA MOTIF, THE HOOK-TURN X-RAY DIFFRACTION 9-06-02 S.SZEP,J.WANG,P.B.MOORE HELIX, 180 DEGREE TURN, RNA 2.50 synthetic,synthetic 1C4L SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE- PAIR SOLUTION NMR 8-09-00 Y.TANAKA,C.KOJIMA,T.YAMAZAKI,T.S.KODAMA,K.YASUNO, S.MIYASHITA,A.M.ONO,A.S.ONO,M.KAINOSHO,Y.KYOGOKU C-U BASE PAIR, RNA synthetic,synthetic 2A8V RHO TRANSCRIPTION TERMINATION FACTOR/RNA COMPLEX X-RAY DIFFRACTION 4-26-99 C.E.BOGDEN,D.FASS,N.BERGMAN,M.D.NICHOLS,J.M.BERGER RHO, OB FOLD, SINGLE-STRANDED NUCLEIC ACID BINDING DOMAIN, PROTEIN/RNA COMPLEX 2.40 synthetic,ESCHERICHIA COLI 1VOR CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI 3R4F PROHEAD RNA X-RAY DIFFRACTION 4-20-11 F.DING,C.LU,W.ZHANO,K.R.RAJASHANKAR,D.L.ANDERSON,P.J.JARDINE, S.GRIMES,A.KE PROHEAD RNA, MOTOR, VIRAL PACKAGING, RNA 3.50 synthetic 1XSU SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM, U69C/C70U MUTATION, COMPLEXED WITH COBALT (III) HEXAMMINE. SOLUTION NMR 12-28-04 M.SCHMITZ RIBONUCLEASE P RNA, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, U69C/C70U MUTANT, METAL BINDING SITE, METAL COMPLEX, COBALT (III) HEXAMMINE COMPLEX synthetic 1ESH THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA SOLUTION NMR 4-24-00 C.-H.KIM,C.C.KAO,I.TINOCO JR. RNA, TRILOOP, STEM-LOOP, BROME MOSAIC VIRUS synthetic 1IBL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN X-RAY DIFFRACTION 5-04-01 J.M.OGLE,D.E.BRODERSEN,W.M.CLEMONS JR.,M.J.TARRY,A.P.CARTER, V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, A SITE, DECODING, TRANSFER RNA, TRNA, ANTICODON, STEM-LOOP, MESSENGER RNA, MRNA, CODON, ANTIBIOTIC, PAROMOMYCIN 3.11 THERMUS THERMOPHILUS,synthetic,synthetic,synthetic 3D5A STRUCTURAL BASIS FOR TRANSLATION TERMINATION ON THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT, RELEASE FACTOR 1 (RF1), TWO TRNA, AND MRNA MOLECULES OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-07-08 M.LAURBERG,H.ASAHARA,A.KOROSTELEV,J.ZHU,S.TRAKHANOV, H.F.NOLLER RIBOSOME, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, CYTOPLASM, PROTEIN BIOSYNTHESIS 3.21 THERMUS THERMOPHILUS HB27,ESCHERICHIA COLI,synthetic 1YJ9 CRYSTAL STRUCTURE OF THE MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI CONTAINING A THREE RESIDUE DELETION IN L22 X-RAY DIFFRACTION 4-26-05 D.TU,G.BLAHA,P.B.MOORE,T.A.STEITZ L22, DELETION MUTATION, MUTATED 50S SUBUNITS, RIBOSOME 2.90 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3HAX CRYSTAL STRUCTURE OF A SUBSTRATE-BOUND GAR1-MINUS H/ACA RNP FROM PYROCOCCUS FURIOSUS X-RAY DIFFRACTION 6-23-09 K.YE H/ACA, GUIDE RNA, RNA-PROTEIN COMPLEX, PSEUDOURIDINE SYNTHASE, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE/BIOSYNTHETIC PROTEIN/RNA COMPLEX 2.11 synthetic,synthetic 4KXT STRUCTURE OF HUMAN ARGONAUTE1 IN COMPLEX WITH GUIDE RNA X-RAY DIFFRACTION 7-31-13 K.NAKANISHI,D.J.PATEL RNASE H FOLD, NUCLEASE, RNA, HYDROLASE-RNA COMPLEX 2.29 SPODOPTERA FRUGIPERDA 4F3T HUMAN ARGONAUTE-2 - MIR-20A COMPLEX X-RAY DIFFRACTION 5-30-12 E.ELKAYAM,C.-D.KUHN,A.TOCILJ,L.JOSHUA-TOR HYDROLASE/GENE REGULATION, RNAI, SLICER, RNA, HYDROLASE-RNA COMPLEX 2.25 HOMO SAPIENS 2WRK THE STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE POST-TRANSLOCATIONAL STATE (PART 3 OF 4). X-RAY DIFFRACTION 10-20-09 Y.-G.GAO,M.SELMER,C.M.DUNHAM,A.WEIXLBAUMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOME, ZINC-FINGER, RNA-BINDING, TRANSLATION, RRNA-BINDING, PROTEIN BIOSYNTHESIS, ELONGATION FACTOR, RIBOSOMAL PROTEIN, TRNA-BINDING, TRANSLOCATION, METAL-BINDING, NUCLEOTIDE-BINDING, ELONGATION FACTOR G, RIBONUCLEOPROTEIN, PROTEIN SYNTHESIS 3.60 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 3CPW THE STRUCTURE OF THE ANTIBIOTIC LINEZOLID BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 7-22-08 J.A.IPPOLITO,Z.K.KANYO,D.WANG,F.J.FRANCESCHI,P.B.MOORE, T.A.STEITZ,E.M.DUFFY LINEZOLID, 50S RIBOSOMAL SUBUNIT, ANTIBIOTIC COMPLEXES, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, ACETYLATION, RIBOSOME 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1G4Q RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG X-RAY DIFFRACTION 7-08-03 G.W.HAN RNA/DNA HYBRID, POLYPURINE TRACT OF HIV-1, DIRECT METHODS, DNA/RNA COMPLEX, DNA-RNA HYBRID 1.15 synthetic 2XD0 A PROCESSED NON-CODING RNA REGULATES A BACTERIAL ANTIVIRAL SYSTEM X-RAY DIFFRACTION 1-12-11 T.R.BLOWER,X.Y.PEI,F.L.SHORT,P.C.FINERAN,D.P.HUMPHREYS,B.F.LUISI, G.P.C.SALMOND TOXIN-RNA COMPLEX, ABORTIVE INFECTION, PHAGE 3.00 synthetic 3OFA CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CHLORAMPHENICOL. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ERYTHROMYCIN, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.19 ESCHERICHIA COLI 2XC7 SOLUTION STRUCTURE OF PHAX-RBD IN COMPLEX WITH SSRNA SOLUTION NMR 4-28-10 A.MOURAO,C.D.MACKERETH,A.VARROT,S.CUSACK,M.SATTLER RNA BINDING PROTEIN, PROTEIN-RNA COMPLEX, NUCLEAR EXPORT synthetic 3J0V STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (30S RIBOSOME OF CLASS 4A OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 14.70 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3OUY HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE AT POSITION 76 OF TRNA X-RAY DIFFRACTION 12-01-10 B.C.PAN,Y.XIONG,T.A.STEITZ PROTEIN-RNA COMPLEX, ROSSMANN FOLD, CCA-ADDING, TRNA, PHOSPHOLATION, TRANSFERASE-RNA COMPLEX 2.69 synthetic 2V0G LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A TRNA(LEU) TRANSCRIPT WITH 5-FLUORO-1,3-DIHYDRO-1- HYDROXY-2,1-BENZOXABOROLE (AN2690) FORMING AN ADDUCT TO THE RIBOSE OF ADENOSINE-76 IN THE ENZYME EDITING SITE. X-RAY DIFFRACTION 7-03-07 F.ROCK,W.MAO,A.YAREMCHUK,M.TUKALO,T.CREPIN,H.ZHOU,Y.ZHANG, V.HERNANDEZ,T.AKAMA,S.BAKER,J.PLATTNER,L.SHAPIRO, S.A.MARTINIS,S.J.BENKOVIC,S.CUSACK,M.R.K.ALLEY CLASS I AMINOACYL- TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS, AMINOACYL-TRNA SYNTHETASE, ATP + L-LEUCINE + TRNA (LEU) GIVES AMP + PPI L-LEUCYL-TRNA SYNTHETASE, METAL-BINDING, NUCLEOTIDE-BINDING ZINC, LIGASE, EDITING, SYNTHETASE, ATP- BINDING 3.5 THERMUS THERMOPHILUS 1F7G SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURES SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, C70U MUTANT, METAL BINDING SITE synthetic 2BYT THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION X-RAY DIFFRACTION 9-15-05 S.CUSACK,M.TUKALO,A.YAREMCHUK,R.FUKUNAGA,S.YOKOYAMA SYNTHETASE, AMINOACYL-TRNA SYNTHETASE, ATP + L-LEUCINE + TRNA (LEU) GIVES AMP + PPI L-LEUCYL-TRNA(LEU), CLASS I AMINOACYL-TRNA SYNTHETASE, EDITING 3.3 THERMUS THERMOPHILUS 4DUY CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, U13C X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME 3.39 THERMUS THERMOPHILUS 3OTO CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM A KSGA MUTANT OF THERMUS THERMOPHILUS (HB8) X-RAY DIFFRACTION 9-29-10 H.DEMIRCI,F.MURPHY IV,R.BELARDINELLI,A.C.KELLEY,V.RAMAKRISHNAN, S.T.GREGORY,A.E.DAHLBERG,G.JOGL S RIBOSOMAL SUBUNIT, KSGA KNOCK-OUT, POST TRANSCRIPTIONAL RRNA MODIFICATION, ANTIBIOTIC RESISTANCE, DECODING, DECODING OF GENETIC CODE, TRNA, MRNA, RIBOSOME 3.69 THERMUS THERMOPHILUS 1DUL STRUCTURE OF THE RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 2-28-00 R.T.BATEY,R.P.RAMBO,L.LUCAST,B.RHA,J.DOUDNA PROTEIN-RNA COMPLEX, DOUBLE HELIX, TETRALOOP, INTERNAL LOOP, SIGNAL RECOGNITION PARTICLE, SRP, RIBONUCLEOPROTEIN, SIGNALING PROTEIN/RNA COMPLEX 1.80 synthetic 1TTT PHE-TRNA, ELONGATION FACTOR EF-TU:GDPNP TERNARY COMPLEX X-RAY DIFFRACTION 12-23-96 P.NISSEN,M.KJELDGAARD,S.THIRUP,G.POLEKHINA,L.RESHETNIKOVA, B.F.C.CLARK,J.NYBORG PROTEIN SYNTHESIS, EF-TU, TRNA, RIBOSOME, 1EFT, 4TNA, PEPTIDE ELONGATION RIBONUCLEOPROTEIN, COMPLEX (ELONGATION FACTOR/TRNA) 2.70 synthetic 3J5T STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE PRE- TRANSLOCATION STATE (PRE-TRANSLOCATION 70S*TRNA STRUCTURE, 30S SUBUNIT WITH HYBRID A/P AND P/E TRNAS AND VIOMYCIN) ELECTRON MICROSCOPY 12-18-13 A.F.BRILOT,A.A.KOROSTELEV,D.N.ERMOLENKO,N.GRIGORIEFF TRANSLATION, EF-G, SINGLE PARTICLE ANALYSIS, PRE-TRANSLOCATION TRANSLATION COMPLEX, VIOMYCIN 7.60 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1Q7Y CRYSTAL STRUCTURE OF CCDAP-PUROMYCIN BOUND AT THE PEPTIDYL TRANSFERASE CENTER OF THE 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 10-07-03 J.L.HANSEN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME 50S, PUROMYCIN, PEPTIDYL TRANSFERASE REACTION, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX 3.20 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1HG9 SOLUTION STRUCTURE OF DNA:RNA HYBRID SOLUTION NMR 1-02-02 M.PETERSEN,K.BONDENSGAARD,J.WENGEL,J.P.JACOBSEN DNA-RNA HYBRID, DNA RNA HYBRID, DNA/RNA CHIMERIC HYBRID DUPLEX, ANTISENSE, LOCKED NUCLEIC ACID, DNA, RNA, HYBRID, RNASE H synthetic 3T1Y STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN ANTI-CODON STEM LOOP (HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) BOUND TO AN MRNA WITH AN AAG-CODON IN THE A-SITE AND PAROMOMYCIN X-RAY DIFFRACTION 1-25-12 F.V.MURPHY,F.A.P.VENDEIX,W.CANTARA,G.LESZCZYNSKA,E.M.GUSTILO, B.SPROAT,A.A.P.MALKIEWICZ,P.F.AGRIS PROTEIN SYNTHESIS, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 2.80 THERMUS THERMOPHILUS,synthetic,synthetic 4E8P STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN A LIGAND-FREE STATE IN THE PRESENCE OF RB+ AND MG2+ X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, METALLOENZYMES, SELF-SPLICING, RETROTRANSPOSITION, RNA 3.28 OCEANOBACILLUS IHEYENSIS 2LHP HIGH RESOLUTION NMR SOLUTION STRUCTURE OF HELIX H1 OF THE CHIMPANZEE HAR1 RNA SOLUTION NMR 7-25-12 M.CEVEC,M.ZIEGELER,C.RICHTER,H.SCHWALBE UUCG TETRALOOP, HAIRPIN, RNA PAN TROGLODYTES 1B7F SXL-LETHAL PROTEIN/RNA COMPLEX X-RAY DIFFRACTION 5-03-99 N.HANDA,O.NUREKI,K.KURIMOTO,I.KIM,H.SAKAMOTO,Y.SHIMURA, Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) SPLICING REGULATION, RNP DOMAIN, RNA COMPLEX, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, RNA-BINDING PROTEIN/RNA COMPLEX 2.60 synthetic 3I1O CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE 3.19 ESCHERICHIA COLI 3J5G E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST3A, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 20.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1QU3 INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN X-RAY DIFFRACTION 8-31-99 L.F.SILVIAN,J.WANG,T.A.STEITZ SHUTTLING MECHANISM, EDITING TRNA SYNTHETASE, DOUBLE-SIEVE, METAL IONS, HYDROLYTIC FUNCTION, LIGASE/RNA COMPLEX 2.90 STAPHYLOCOCCUS AUREUS 4BYE STRUCTURE OF THERMUS THERMOPHILUS 50S RIBOSOME X-RAY DIFFRACTION 8-28-13 S.FENG,Y.CHEN,K.KAMADA,H.WANG,K.TANG,M.WANG,Y.G.GAO RIBOSOME, TOXIN-ANTITOXIN, RIBOSOME-DEPENDENT NUCLEASE, MRNA DEGRADATION, TRANSLATION REGULATION 3.35 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4A1D T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 26S RRNA AND PROTEINS OF MOLECULE 4. X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA 1U2A STEM LOOP IIA FROM U2SNRNA OF SACCHAROMYCES CEREVISIAE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 3-04-98 S.C.STALLINGS,P.B.MOORE PRE-MRNA SPLICING, U2SNRNA, U-TURN, RNA-PROTEIN INTERACTIONS, RIBONUCLEIC ACID SACCHAROMYCES CEREVISIAE 1I5L CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS COMPLEXED WITH SHORT POLY-U RNA X-RAY DIFFRACTION 8-28-01 I.TORO,S.THORE,C.MAYER,J.BASQUIN,B.SERAPHIN,D.SUCK SNRNP, SM, CORE SNRNP DOMAIN, RNA BINDING PROTEIN, SINGLE- STRANDED RNA BINDING PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX 2.75 synthetic 1U0B CRYSTAL STRUCTURE OF CYSTEINYL-TRNA SYNTHETASE BINARY COMPLEX WITH TRNACYS X-RAY DIFFRACTION 11-23-04 S.HAUENSTEIN,C.M.ZHANG,Y.M.HOU,J.J.PERONA PROTEIN-RNA COMPLEX, LIGASE/RNA COMPLEX 2.30 ESCHERICHIA COLI 2OGO THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE RETAPAMULIN (SB-275833) X-RAY DIFFRACTION 5-01-07 C.DAVIDOVICH,A.BASHAN,T.AUERBACH-NEVO,A.YONATH RETAPAMULIN, SB-275833, PLEUROMUTILIN, PTC, PEPTIDYL TRANSFERASE CENTER, RIBOSOME, ANTIBIOTIC 3.66 DEINOCOCCUS RADIODURANS 4KD2 S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-I CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT B. THE 30S SUBUNIT B CAN BE FOUND IN 4KD0. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KCY (30S) AND 4KCZ (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3OI4 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH TELITHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, TELITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS 4BTC THERMUS THERMOPHILUS RIBOSOME X-RAY DIFFRACTION 8-07-13 Y.CHEN,S.FENG,V.KUMAR,Y.G.GAO RIBOSOME, TRANSLOCATION, GTPASE ACTIVATION ROTATION 2.95 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3P4C ALTERNATINGLY MODIFIED 2'FLUORO RNA OCTAMER F/RA2U2-R32 X-RAY DIFFRACTION 1-05-11 P.S.PALLAN,E.M.GREENE,P.A.JICMAN,R.K.PANDEY,M.MANOHARAN,E.ROZNERS, M.EGLI RNA, 2'-FLUORO-RNA O2'-MODIFICATION, OCTAMER, 2'-FLUORO 2'- DEOXYCYTIDINE, 2'-FLUORO 2'-DEOXYADENOSINE, 2'-FLUORO 2'- DEOXYURIDINE, SIRNA 1.15 synthetic 3I2R CRYSTAL STRUCTURE OF THE HAIRPIN RIBOZYME WITH A 2',5'- LINKED SUBSTRATE WITH N1-DEAZAADENOSINE AT POSITION A9 X-RAY DIFFRACTION 11-03-09 J.E.WEDEKIND,R.C.SPITALE,J.KRUCINSKA HAIRPIN RIBOZYME, N1-DEAZAADENOSINE, RNA 2.80 synthetic,synthetic 2KY1 THE STRUCTURE OF RNA INTERNAL LOOPS WITH TANDEM AG PAIRS: 5'UAGA/3'AGAU SOLUTION NMR 6-02-10 N.B.HAMMOND,S.D.KENNEDY,D.H.TURNER TANDEM AG PAIRS, THERMODYNAMICS, IMINO AG PAIR, DUAL SYN GG PAIR, EXTRAHELICAL U, RNA synthetic 1FIX THE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASE X-RAY DIFFRACTION 12-11-96 N.C.HORTON,B.C.FINZEL RIGHT HANDED DNA/RNA HYBRID, DOUBLE HELIX, HIV-1 PRIMER BINDING SITE, DNA-RNA HYBRID 2.30 synthetic 3ADL STRUCTURE OF TRBP2 AND ITS MOLECULE IMPLICATIONS FOR MIRNA PROCESSING X-RAY DIFFRACTION 5-26-10 Y.A.YUAN,H.Y.CHEN TRBP2, MIRNA PROCESSING, GENE REGULATION-RNA COMPLEX 2.20 synthetic 3I22 CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, ACETYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN 3.71 ESCHERICHIA COLI K-12,ESCHERICHIA COLI K-12 2DET COCRYSTAL STRUCTURE OF AN RNA SULFURATION ENZYME MNMA AND TRNA-GLU IN THE PRE-REACTION STATE X-RAY DIFFRACTION 8-15-06 T.NUMATA,Y.IKEUCHI,S.FUKAI,T.SUZUKI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 3.40 synthetic 3S1M RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARIANT 1) X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.13 synthetic 1BIV BOVINE IMMUNODEFICIENCY VIRUS TAT-TAR COMPLEX, NMR, 5 STRUCTURES SOLUTION NMR 12-23-96 X.YE,R.A.KUMAR,D.J.PATEL BOVINE IMMUNODEFICIENCY VIRUS, TAT-TAR, ARG-GUA INTERACTIONS, BUTTRESSING U(DOT)AU BASE TRIPLE, GLYCINE AND ISOLEUCINE PACKING, PEPTIDE RNA RECOGNITION, RNA BENDING, COMPLEX (RIBONUCLEIC ACID/PEPTIDE), VIRAL PROTEIN/RNA COMPLEX synthetic 1VBZ CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN BA2+ SOLUTION X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 2.80 synthetic 3VNU COMPLEX STRUCTURE OF VIRAL RNA POLYMERASE I X-RAY DIFFRACTION 8-08-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 3.20 synthetic,synthetic 2HGR S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGR CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGU. X-RAY DIFFRACTION 11-07-06 L.JENNER,G.YUSUPOVA,B.REES,D.MORAS,M.YUSUPOV RIBOSOME FUNCTIONAL COMPLEX, INITIATION 4.51 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,THERMUS THERMOPHILUS HB8,synthetic 2LJJ THE STRUCTURE OF SUBDOMAIN IV-B FROM THE CVB-3 IRES SOLUTION NMR 9-19-12 Y.IHLE,R.ZELL,M.GOERLACH HAIRPIN, RNA, COXSACKIEVIRUS B3, INTERNAL RIBOSOMAL ENTRY SITE synthetic 1EGK CRYSTAL STRUCTURE OF A NUCLEIC ACID FOUR-WAY JUNCTION X-RAY DIFFRACTION 6-26-00 J.NOWAKOWSKI,P.J.SHIM,C.D.STOUT,G.F.JOYCE FOUR-WAY JUNCTION, NUCLEIC ACID, RNA-DNA COMPLEX, 10-23 DNA ENZYME, RIBOZYME, DNA/RNA COMPLEX, DNA-RNA HYBRID 3.10 synthetic 2NVZ RNA POLYMERASE II ELONGATION COMPLEX WITH UTP, UPDATED 11/2006 X-RAY DIFFRACTION 12-19-06 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 4.30 synthetic 3DKN SEC61 IN THE CANINE RIBOSOME-CHANNEL COMPLEX FROM THE ENDOPLASMIC RETICULUM ELECTRON MICROSCOPY 8-19-08 J.-F.MENETRET,C.AKEY RIBOSOME-CHANNEL COMPLEX, CRYO-ELECTRON MICROSCOPY, CO- TRANSLATIONAL TRANSLOCATION, ENDOPLASMIC RETICULUM, PROTEIN TRANSPORT/RNA COMPLEX 8.70 CANIS LUPUS FAMILIARIS,CANIS LUPUS FAMILIARIS,CANIS LUPUS FAMILIARIS 1RAW ATP BINDING RNA APTAMER IN COMPLEX WITH AMP, NMR, 10 STRUCTURES SOLUTION NMR 1-27-97 T.DIECKMANN,J.FEIGON RIBONUCLEIC ACID, UUCG TETRALOOP, RNA synthetic 3J18 STRUCTURE OF THE BACTERIAL RIBOSOME COMPLEXED BY TMRNA-SMPB AND EF-G DURING TRANSLOCATION AND MLD-LOADING (30S SUBUNIT) ELECTRON MICROSCOPY 5-09-12 D.J.F.RAMRATH,H.YAMAMOTO,K.ROTHER,D.WITTEK,M.PECH,T.MIELKE,J.LOERKE, P.SCHEERER,P.IVANOV,Y.TERAOKA,O.SHPANCHENKO,K.H.NIERHAUS,C.M.T.SPAHN TRANS-TRANSLATION, MLD-LOADING, TRANSLOCATION, RIBOSOME 8.30 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3V11 STRUCTURE OF THE TERNARY INITIATION COMPLEX AIF2:GDPNP:METHIONYLATED INITIATOR TRNA X-RAY DIFFRACTION 3-28-12 Y.MECHULAM,E.SCHMITT GTP BINDING MODULE, INITIATOR TRNA CARRIER, GTP AND TRNA, TRANSLATION-RNA COMPLEX 5.00 ESCHERICHIA COLI 3OW2 CRYSTAL STRUCTURE OF ENHANCED MACROLIDE BOUND TO 50S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 6-20-12 Z.F.KANYO RIBOSOME, PROTEIN TRANSLATION, MACROLIDE BINDING 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3Q2T CRYSTAL STRUCTURE OF CFIM68 RRM/CFIM25/RNA COMPLEX X-RAY DIFFRACTION 2-16-11 Q.YANG CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END PROCESSING, RNA PROCESSING, CLEAVAGE FACTOR, NUDIX PROTEIN, PROTEIN-PROTEIN COMPLEX, PROTEIN-RNA COMPLEX, RRM, NUDIX FOLD, RNA BINDING PROTEIN-RNA COMPLEX 3.06 synthetic 3I4M -OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLEX D X-RAY DIFFRACTION 9-08-09 G.E.DAMSMA,P.CRAMER RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, 8-OXOGUANINE, OXIDATIVE DAMAGE, DNA DAMAGE, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA REPAIR, MRNA PROCESSING, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.70 synthetic 3OWZ CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, SOAKED IN IRIDIUM X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION, GLYCINE RIBOSWITCH, RNA 2.95 synthetic,synthetic 1F27 CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT X-RAY DIFFRACTION 6-12-00 J.NIX,D.SUSSMAN,C.WILSON RNA APTAMER, PSEUDOKNOT, BIOTIN-BINDING RNA 1.30 synthetic,synthetic 1M5P TRANSITION STATE STABILIZATION BY A CATALYTIC RNA X-RAY DIFFRACTION 10-12-02 P.B.RUPERT,A.MASSEY,S.T.SIGURDSSON,A.R.FERRE-D'AMARE HAIRPIN RIBOZYME, CATALYTIC RNA, U1A RNA BINDING PROTEIN, CL5*, TRANSLATION/RNA COMPLEX 2.60 synthetic,synthetic,synthetic 1AC3 SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES SOLUTION NMR 6-16-97 C.W.CROSS,J.S.RICE,X.GAO STRUCTURE, NMR, RNA, DNA, ANTISENSE OLIGONUCLEOTIDES, THIOFORMACETAL BACKBONE MODIFICATION, HYBRID DUPLEX, DNA/RNA HYBRID COMPLEX synthetic 1NKW CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 2-11-03 J.M.HARMS,F.SCHLUENZEN,R.ZARIVACH,A.BASHAN,S.GAT,I.AGMON, H.BARTELS,F.FRANCESCHI,A.YONATH RIBOSOME; LARGE SUBUNIT; 50S; DEINOCOCCUS RADIODURANS; X- RAY STRUCTURE; PEPTIDYL-TRANSFERASE, PEPTIDE BOND FORMATION 3.10 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3BBK MIMINALLY JUNCTIONED HAIRPIN RIBOZYME INCORPORATES A38C AND 2'5'-PHOSPHODIESTER LINKAGE WITHIN ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME, RNA, PHOSPHORYL TRANSFER, A38C, 2'5'- PHOSPHODIESTER, REVERSE LINKAGE 2.75 synthetic,synthetic,synthetic 4F8U CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECOGING SITE IN COMPLEX WITH SISOMICIN (C2 FORM) X-RAY DIFFRACTION 8-15-12 J.KONDO,M.KOGANEI,T.KASAHARA DECODING, RIBOSOME, RNA-ANTIBIOTIC COMPLEX 2.00 synthetic,synthetic 2V7R CRYSTAL STRUCTURE OF A HUMAN TRNAGLY MICROHELIX AT 1.2 ANGSTROM RESOLUTION X-RAY DIFFRACTION 3-18-08 C.FOERSTER,M.MANKOWSKA,J.P.FUERSTE,M.PERBANDT,C.BETZEL, V.A.ERDMANN TRNA, ACCEPTOR STEM, GLYCINE, MICROHELIX, IDENTITY, HYDRATION, RNA 1.20 HOMO SAPIENS,HOMO SAPIENS 3TD1 CRYSTAL STRUCTURE OF THE BACTERIAL A1408G-MUTANT AND THE PROTOZOA CYTOPLASMIC RIBOSOMAL DECODING SITE IN COMPLEX WITH GENETICIN X-RAY DIFFRACTION 12-07-11 J.KONDO DECODING, RIBOSOME, RNA-ANTIBIOTIC COMPLEX 2.10 synthetic 1L3D LOW RESOLUTION CRYSTAL STRUCTURE OF A VIRAL RNA PSEUDOKNOT X-RAY DIFFRACTION 3-22-02 M.EGLI,G.MINASOV,L.SU,A.RICH PSEUDOKNOT, FRAMESHIFTING, VIRAL RNA, FLEXIBILITY 2.85 synthetic 3DIX CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE, K+ ANOMALOUS DATA X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, POTASSIUM CATION, RNA 2.90 synthetic 3E1B STRUCTURE OF THE 50S SUBUNIT OF E. COLI RIBOSOME IN PRE- ACCOMMODATION STATE ELECTRON MICROSCOPY 8-18-09 B.DEVKOTA,T.R.CAULFIELD,R.-Z.TAN,S.C.HARVEY RIBOSOME, TRANSLATION, ACCOMMODATION, TRNA SELECTION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, TRNA-BINDING, PHOSPHOPROTEIN, ANTIBIOTIC RESISTANCE, METAL-BINDING, ZINC, REPRESSOR, TRANSLATION REGULATION 9.00 ESCHERICHIA COLI,ESCHERICHIA COLI 2OJ3 HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR STRUCTURE, WITH C75U MUTATION, BOUND TO TL+ AND COBALT HEXAMMINE (CO(NH3) 63+) X-RAY DIFFRACTION 3-27-07 A.KE,F.DING,J.D.BATCHELOR,J.A.DOUDNA TL+ AND COBALT HEXAMMINE COMPETE FOR BINDING SITES., STRUCTURAL PROTEIN/RNA COMPLEX 2.90 synthetic 1N78 CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU) AND GLUTAMOL-AMP. X-RAY DIFFRACTION 2-25-03 S.SEKINE,O.NUREKI,D.Y.DUBOIS,S.BERNIER,R.CHENEVERT, J.LAPOINTE,D.G.VASSYLYEV,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) ERS/TRNA/GOA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 2.10 synthetic 1JOX NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P RNA REFINED WITH RESIDUAL DIPOLAR COUPLINGS SOLUTION NMR 5-01-02 T.C.LEEPER,F.J.SCHMIDT,S.R.VAN DOREN RIBONUCLEIC ACID, RNASE P, HAIRPIN, RESIDUAL DIPOLAR COUPLING REFINEMENT, UGNRAU synthetic 3UZN CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX WITH PAROMOMYCIN X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3BO1 RIBOSOME-SECY COMPLEX ELECTRON MICROSCOPY 12-09-08 C.W.AKEY,J.F.MENETRET RIBOSOME-SECY COMPLEX, MEMBRANE, PROTEIN TRANSPORT, TRANSLOCATION, TRANSMEMBRANE, TRANSPORT 9.60 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 4N48 CAP-SPECIFIC MRNA (NUCLEOSIDE-2'-O-)-METHYLTRANSFERASE 1 PROTEIN IN COMPLEX WITH CAPPED RNA FRAGMENT X-RAY DIFFRACTION 1-22-14 M.SMIETANSKI,M.WERENER,E.PURTA,K.H.KAMINSKA,J.STEPINSKI, E.DARZYNKIEWICZ,M.NOWOTNY,J.M BUJNICKI METHYLTRANSFERASE, MRNA CAP METHYLATION, CAPPED MRNA, TRANSFERASE-RNA COMPLEX 2.70 synthetic 2Y9D STRUCTURE OF THE SPLICEOSOMAL U4 SNRNP CORE DOMAIN X-RAY DIFFRACTION 5-11-11 A.K.W.LEUNG,K.NAGAI,J.LI SPLICING-RNA COMPLEX, PRE-MRNA SPLICING, SPLICEOSOME, SNRNP BIOGENESIS, SM SITE, SM FOLD, HETEROMERIC HEPTAMERIC RING, RNA BINDING 3.60 HOMO SAPIENS 4IOA CRYSTAL STRUCTURE OF COMPOUND 4E BOUND TO LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 3-06-13 S.HAN,E.S.MARR RIBOSOME-RIBOSOME INHIBITOR COMPLEX 3.20 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3OFP CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO ERYTHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 10-13-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ERYTHROMYCIN, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.10 ESCHERICHIA COLI 1YTU STRUCTURAL BASIS FOR 5'-END-SPECIFIC RECOGNITION OF THE GUIDE RNA STRAND BY THE A. FULGIDUS PIWI PROTEIN X-RAY DIFFRACTION 4-05-05 J.B.MA,Y.R.YUAN,G.MEISTER,Y.PEI,T.TUSCHL,D.J.PATEL PROTEIN-RNA COMPLEX, RNA DUPLEX, RNA BINDING PROTEIN/RNA COMPLEX 2.50 synthetic,synthetic 1HHX SOLUTION STRUCTURE OF LNA3:RNA HYBRID SOLUTION NMR 5-30-02 M.PETERSEN,K.BONDENSGAARD,J.WENGEL,J.P.JACOBSEN ANTISENSE, LOCKED NUCLEIC ACID, LNA, RNA, HYBRID, RNASE H synthetic 3I61 STRUCTURE OF MSS116P BOUND TO SSRNA AND ADP-BERYLLIUM FLUORIDE X-RAY DIFFRACTION 9-08-09 M.DEL CAMPO,A.M.LAMBOWITZ PROTEIN-RNA COMPLEX, RNA HELICASE, DEAD-BOX, ATP-BINDING, HELICASE, HYDROLASE, MITOCHONDRION, MRNA PROCESSING, MRNA SPLICING, NUCLEOTIDE-BINDING, RNA-BINDING, TRANSIT PEPTIDE, TRANSLATION REGULATION, HYDROLASE/RNA COMPLEX 2.10 synthetic 1J9H CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES X-RAY DIFFRACTION 10-26-01 Y.XIONG,J.DENG,C.SUDARSANAKUMAR,M.SUNDARALINGAM URIDINE BULGE, RNA DUPLEX, A-FORM, KINK, METAL BINDING 1.40 synthetic 219D DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)- 3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY SOLUTION NMR 10-15-95 C.GONZALEZ,T.L.JAMES DNA, RNA, NMR, HYBRID, PHOSPHOROTHIOATE, DNA/RNA COMPLEX, DNA-RNA HYBRID synthetic 1IE1 NMR SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY HAMSTER NUCLEOLIN RBD12. SOLUTION NMR 6-20-01 P.BOUVET,F.H-T.ALLAIN,L.D.FINGER,T.DIECKMANN,J.FEIGON EUCARYOTIC LOOP E MOTIF A-FORM HELIX FLEXIBLE LOOP, RNA synthetic 4JI2 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING 3.64 THERMUS THERMOPHILUS 3D2V STRUCTURE OF THE EUKARYOTIC TPP-SPECIFIC RIBOSWITCH BOUND TO THE ANTIBACTERIAL COMPOUND PYRITHIAMINE PYROPHOSPHATE X-RAY DIFFRACTION 7-01-08 S.THORE,C.FRICK,N.BAN RNA, RIBOSWITCH, ANTIBIOTIC, STRUCTURE, THIAMINE PYROPHOSPHATE, PYRITHIAMINE PYROPHOSPHATE, COMPLEX 2.00 ARABIDOPSIS THALIANA 2DR9 COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDCC X-RAY DIFFRACTION 11-14-06 K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.80 synthetic 3F4E CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, SPLIT RNA. X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG FMN, RIBOSWITCH, TRANSCRIPTION, RNA 3.05 synthetic,synthetic 4K4S POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R3_FORM) X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.40 synthetic,synthetic,synthetic 2EUY SOLUTION STRUCTURE OF THE INTERNAL LOOP OF HUMAN U65 H/ACA SNORNA 3' HAIRPIN SOLUTION NMR 1-03-06 J.FEIGON,M.KHANNA,H.WU,C.JOHANSSON,M.CAIZERGUES-FERRER HARIPIN, INTERNAL-LOOP synthetic 2UWM C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA X-RAY DIFFRACTION 5-08-07 T.OSE,N.SOLER,L.RASUBALA,K.KUROKI,D.KOHDA,D.FOURMY, S.YOSHIZAWA,K.MAENAKA PROTEIN BIOSYNTHESIS, TRANSLATION, GTP-BINDING, NUCLEOTIDE- BINDING, SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR 2.31 MOORELLA THERMOACETICA 3KMS G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA TRIGONAL STRUCTURE X-RAY DIFFRACTION 7-07-10 C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE D, POLYMERASE, RIBAVIRIN, FOOT-AND MOUTH DISEASE VIRUS, RNA DEPENDENT RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 2.20 synthetic,synthetic 2XEB NMR STRUCTURE OF THE PROTEIN-UNBOUND SPLICEOSOMAL U4 SNRNA 5' STEM LOOP SOLUTION NMR 5-26-10 M.FALB,I.AMATA,F.GABEL,B.SIMON,T.CARLOMAGNO RNA, PRE-MRNA SPLICING, U4/U6 DI-SNRNP, RNP-BINDING DOMAIN, SANS HOMO SAPIENS,HOMO SAPIENS 1R9T RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE X-RAY DIFFRACTION 11-16-04 K.D.WESTOVER,D.A.BUSHNELL,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION/DNA/RNA COMPLEX, TRANSCRIPTION/DNA-RNA HYBRID COMPLEX 3.50 synthetic 2HGI CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E AND P CODONS. THIS ENTRY 2HGI CONTAINS 30S RIBOSOMAL SUBUNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGJ. X-RAY DIFFRACTION 11-07-06 L.JENNER,G.YUSUPOVA,B.REES,D.MORAS,M.YUSUPOV RIBOSOME, NO-TEMPLATE, CODON-MIMICRY 5.00 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,THERMUS THERMOPHILUS HB8 1BR3 CRYSTAL STRUCTURE OF AN 82-NUCLEOTIDE RNA-DNA COMPLEX FORMED BY THE 10-23 DNA ENZYME X-RAY DIFFRACTION 2-23-99 J.NOWAKOWSKI,P.J.SHIM,G.S.PRASAD,C.D.STOUT,G.F.JOYCE DNA ENZYME, RIBOZYME, HOLLIDAY JUNCTION, DNA/RNA HYBRID 3.00 synthetic 2B2D RNA STEMLOOP OPERATOR FROM BACTERIOPHAGE QBETA COMPLEXED WITH AN N87S,E89K MUTANT MS2 CAPSID X-RAY DIFFRACTION 5-09-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY CAPSID, COMPLEX (CAPSID PROTEIN - RNA HAIRPIN) HAIRPIN, LEVIVIRUS, VIRUS/VIRAL, PROTEIN/RNA, VIRUS/VIRAL PROTEIN/RNA COMPLEX 2.90 ENTEROBACTERIO PHAGE MS2 3UZ1 CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX WITH PAROMOMYCIN X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2LPS MOLECULAR DYNAMICS RE-REFINEMENT OF DOMAIN 5 OF THE YEAST AI5(GAMMA) GROUP II INTRON SOLUTION NMR 8-08-12 N.M.HENRIKSEN,D.R.DAVIS,T.E.CHEATHAM III RNA, TETRALOOP, BULGE synthetic 2PXT VARIANT 15 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.50 ESCHERICHIA COLI 3OL7 POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH CTP X-RAY DIFFRACTION 12-22-10 P.GONG,O.B.PEERSEN RNA-DEPENDENT RNA POLYMERASE, ELONGATION COMPLEX, VIRUS, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.70 synthetic,synthetic,synthetic 2DD3 AN ALTERNATING SHEARED AA PAIR IN 5'GGUGAAGGCU/3'PCCGAAGCCG: II. THE MINOR CONFORMATION WITH A6/A5/A16 STACK SOLUTION NMR 6-13-06 G.CHEN,S.D.KENNEDY,T.R.KRUGH,D.H.TURNER RAPID CONFORMATION EXCHANGE, ALTERNATING SHEARED AA PAIR, SEQUENCE SPECIFIC A-MINOR MOTIF, KINK-TURN MOTIF, THERMODYNAMICS, RNA SECONDARY STRUCTURE PREDICTION synthetic,synthetic 470D CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA X-RAY DIFFRACTION 5-12-99 M.TEPLOVA,G.MINASOV,V.TERESHKO,G.INAMATI,P.D.COOK,M.EGLI '-O-(2-METHOXYETHYL) RIBOSE, RNA DODECAMER DUPLEX, RIBONUCLEIC ACID 1.95 synthetic 4DHA CRYSTAL STRUCTURE OF YAEJ BOUND TO THE 70S RIBOSOME X-RAY DIFFRACTION 3-28-12 M.G.GAGNON,S.V.SEETHARAMAN,D.P.BULKLEY,T.A.STEITZ RIBOSOME, YAEJ, RIBOSOME STALLING, RIBOSOME RESCUE, RESCUE FACTOR, ALTERNATIVE RESCUE FACTOR, ARFB, RELEASE FACTOR, RESCUE OF STALLED RIBOSOMES 3.20 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3HJY STRUCTURE OF A FUNCTIONAL RIBONUCLEOPROTEIN PSEUDOURIDINE SYNTHASE BOUND TO A SUBSTRATE RNA X-RAY DIFFRACTION 6-23-09 B.LIANG,J.ZHOU,E.KAHEN,R.M.TERNS,M.P.TERNS,H.LI PROTEIN-RNA COMPLEX, BOX H/ACA, RIBONUCLEOPROTEIN PARTICLES, RNP, PSEUDOURIDINE SYNTHASE, PSEUDOURIDYLASE, PSEUDOURIDYLATION, RNA EDITING, POST-TRANSCRIPTIONAL MODIFICATION, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, ISOMERASE/RNA COMPLEX 3.65 synthetic,synthetic,synthetic 3T1H STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN ANTI-CODON STEM LOOP (HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) BOUND TO AN MRNA WITH AN AAA-CODON IN THE A-SITE AND PAROMOMYCIN X-RAY DIFFRACTION 1-25-12 F.V.MURPHY,F.A.P.VENDEIX,W.CANTARA,G.LESZCZYNSKA,E.M.GUSTILO, B.SPROAT,A.A.P.MALKIEWICZ,P.F.AGRIS PROTEIN SYNTHESIS, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.11 THERMUS THERMOPHILUS,synthetic,synthetic 4K0L CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS 70S IN COMPLEX WITH TRNAS AND MRNA CONTAINING A PSEUDOURIDINE IN A STOP CODON X-RAY DIFFRACTION 7-03-13 I.S.FERNANDEZ,C.L.NG,A.C.KELLEY,W.GUOWEI,Y.T.YU,V.RAMAKRISHNAN RIBOSOMAL SUBUNIT, TRANSLATION, RIBOSOME 3.30 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,SYNTHETIC CONSTRUCT 2E9Z FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TEMPLATE- PRIMER RNA, ATP AND UTP X-RAY DIFFRACTION 6-26-07 C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO, N.VERDAGUER D POLYMERASE, FOOT-AND- MOUTH DISEASE VIRUS, RNA-DEPENDENT RNA POLYMERASE, POLYMERASE, TRANSFERASE/RNA COMPLEX 3.00 synthetic,synthetic 3FHT CRYSTAL STRUCTURE OF HUMAN DBP5 IN COMPLEX WITH AMPPNP AND RNA X-RAY DIFFRACTION 2-17-09 H.VON MOELLER,E.CONTI DBP5, DEAD-BOX HELICASE, RNA DEPENDENT ATPASE, MRNA EXPORT, NUCLEOCYTOPLASMIC TRANSPORT, NUP214, CAN, NUP159, DDX19B, NUCLEAR PORE, GLE1, ALTERNATIVE SPLICING, ATP-BINDING, CYTOPLASM, HELICASE, HYDROLASE, MEMBRANE, MRNA TRANSPORT, NUCLEAR PORE COMPLEX, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, PROTEIN TRANSPORT, RNA-BINDING, TRANSLOCATION, TRANSPORT, HYDROLASE/RNA COMPLEX 2.20 synthetic 3PYT CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 OF CRPV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 255D CRYSTAL STRUCTURE OF AN RNA DOUBLE HELIX INCORPORATING A TRACK OF NON-WATSON-CRICK BASE PAIRS X-RAY DIFFRACTION 2-07-95 S.R.HOLBROOK,C.CHEONG,I.TINOCO JR,S.-H.KIM A-RNA, DOUBLE HELIX, MISMATCHED 2.00 synthetic 1RFR NMR STRUCTURE OF THE 30MER STEMLOOP-D OF COXSACKIEVIRAL RNA SOLUTION NMR 3-23-04 O.OHLENSCHLAGER,J.WOHNERT,E.BUCCI,S.SEITZ,S.HAFNER, R.RAMACHANDRAN,R.ZELL,M.GORLACH LOOP WITH CONFORMATION SIMILAR TO STABLE UNCG-TETRALOOPS AND U:G CLOSING BASE PAIR, BASE-PAIRED U:U-C:U-U:U MISMATCH, A-FORM HELIX STEMS, RNA HUMAN COXSACKIEVIRUS B3 2HUA SOLUTION STRUCTURE OF CSFV IRES DOMAIN IIA SOLUTION NMR 4-17-07 N.LOCKER,L.E.EASTON,P.J.LUKAVSKY RNA HAIRPIN synthetic 1NBK THE STRUCTURE OF RNA APTAMER FOR HIV TAT COMPLEXED WITH TWO ARGININAMIDE MOLECULES SOLUTION NMR 12-03-03 A.MATSUGAMI,S.KOBAYASHI,K.OUHASHI,S.UESUGI,R.YAMAMOTO, K.TAIRA,S.NISHIKAWA,P.K.R.KUMAR,M.KATAHIRA RNA-LIGANDS COMPLEX, BASE TRIPLE, RNA APTAMER, HIV TAT synthetic 2WDG STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN METAL-BINDING, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSLATION, COILED COIL, TRNA-BINDING, RRNA-BINDING, TRNA, ZINC, MRNA, RIBOSOME, RNA-BINDING, ZINC-FINGER 3.30 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2F8T CRYSTAL STRUCTURE OF AA-AGO WITH EXTERNALLY-BOUND SIRNA X-RAY DIFFRACTION 10-31-06 Y.R.YUAN,H.Y.CHEN,D.J.PATEL ARGONAUTE, SIRNA, RISC LOADING COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX 3.10 synthetic 1QVF STRUCTURE OF A DEACYLATED TRNA MINIHELIX BOUND TO THE E SITE OF THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-11-03 T.M.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX 3.10 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 4DR7 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS (HB8) 30S RIBOSOMAL SUBUNIT WITH CODON, CRYSTALLOGRAPHICALLY DISORDERED NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION, AND STREPTOMYCIN BOUND X-RAY DIFFRACTION 11-14-12 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.75 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3NMU CRYSTAL STRUCTURE OF SUBSTRATE-BOUND HALFMER BOX C/D RNP X-RAY DIFFRACTION 5-25-11 H.LI,S.XUE,R.WANG KINK-TURN MOTIF, RNA ASSEMBLY MOTIF, TRANSFERASE-RNA COMPLEX 2.73 PYROCOCCUS FURIOSUS,synthetic 3J4V E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN CLASSIC PRE- TRANSLOCATION STATE (PRE1A, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2BNY MS2 (N87A MUTANT) - RNA HAIRPIN COMPLEX X-RAY DIFFRACTION 3-22-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY VIRUS, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, ICOSAHEDRAL VIRUS 3.0 ENTEROBACTERIO PHAGE MS2 1NTA .9 A CRYSTAL STRUCTURE OF STREPTOMYCIN RNA-APTAMER X-RAY DIFFRACTION 5-13-03 V.TERESHKO,E.SKRIPKIN,D.J.PATEL STREPTOMYCIN RNA-APTAMER, BARIUM FORM 2.90 synthetic,synthetic 2OE6 .4A X-RAY CRYSTAL STRUCTURE OF UNLIGANDED RNA FRAGMENT GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC CONTAINING THE HUMAN RIBOSOMAL DECODING A SITE: RNA CONSTRUCT WITH 5'-OVERHANG X-RAY DIFFRACTION 2-13-07 T.HERMANN,V.TERESHKO,E.SKRIPKIN,D.J.PATEL RIBOSOMAL DECODING SITE, A SITE, HOMO SAPIENS, RNA DUPLEX 2.40 synthetic,synthetic 2ESE STRUCTURE OF THE SAM DOMAIN OF VTS1P IN COMPLEX WITH RNA SOLUTION NMR 1-24-06 F.H.T.ALLAIN PROTEIN-RNA COMPLEX, SHAPE SPECIFIC RECOGNITION, SAM DOMAIN, STEM-LOOP, PROTEIN/RNA COMPLEX COMPLEX SACCHAROMYCES CEREVISIAE 3U56 CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217V TTHL1 IN COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 10-31-12 A.G.GABDULKHAKOV,N.A.NEVSKAYA,S.V.NIKONOV ROSSMANN FOLD, RIBOSOMAL PROTEIN, RRNA, RIBOSOME, L1 PROTUBERANCE IN THE RIBOSOME, RNA-RNA BINDING PROTEIN COMPLEX 2.10 THERMUS THERMOPHILUS 2M58 STRUCTURE OF 2'-5' AG1 LARIAT FORMING RIBOZYME IN ITS INACTIVE STATE SOLUTION NMR 4-03-13 T.CARLOMAGNO,I.AMATA,L.CODUTTI,M.FALB,J.FOHRER,B.SIMON RNA, LARIAT, 2'-5' BRANCHING SYNTHETIC 2Z75 T. TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSAMINE-6- PHOSPHATE X-RAY DIFFRACTION 9-04-07 D.J.KLEIN,S.R.WILKINSON,M.D.BEEN,A.R.FERRE-D'AMARE RIBOZYME, RIBOSWITCH, GLUCOSE-6-PHOSPHATE, GLUCOSAMINE-6- PHOSPHATE, DNA, RNA 1.70 synthetic 3W1K CRYSTAL STRUCTURE OF THE SELENOCYSTEINE SYNTHASE SELA AND TRNASEC COMPLEX X-RAY DIFFRACTION 6-05-13 Y.ITOH,S.SEKINE,S.YOKOYAMA PROTEIN-RNA COMPLEX, HOMODECAMER, PENTAMER OF DIMERS, FOLD-TYPE I PYRIDOXAL 5'-PHOSPHATE (PLP) DEPENDENT ENZYME, NON-CANONICAL TRNA, L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE, SELENOCYSTEINE SYNTHESIS, SELENIUM METABOLISM, TRANSFERASE-RNA COMPLEX 7.50 THERMOANAEROBACTER TENGCONGENSIS MB4 2B9N S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF RELEASE FACTOR RF2, TRNAS AND MRNA BOUND TO THE RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT FROM A CRYSTAL STRUCTURE OF RELEASE FACTOR RF1, TRNAS AND MRNA BOUND TO THE RIBOSOME AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 1-10-06 S.PETRY,D.E.BRODERSEN,F.V.MURPHY IV,C.M.DUNHAM,M.SELMER, M.J.TARRY,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRANSLATION, RELEASE FACTOR 6.76 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS 3AVW STRUCTURE OF VIRAL RNA POLYMERASE COMPLEX 4 X-RAY DIFFRACTION 1-18-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 2.60 synthetic,synthetic 4A3G RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 2NT DNA-RNA HYBRID X-RAY DIFFRACTION 2-08-12 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.50 SACCHAROMYCES CEREVISIAE 3ZJT TERNARY COMPLEX OF E .COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) 574 THE BENZOXABOROLE AN3017 IN THE EDITING CONFORMATION X-RAY DIFFRACTION 4-17-13 S.CUSACK,A.PALENCIA,T.CREPIN,V.HERNANDEZ,T.AKAMA,S.J.BAKER,W.BU, L.FENG,Y.R.FREUND,L.LIU,M.MEEWAN,M.MOHAN,W.MAO,F.L.ROCK,H.SEXTON, A.SHEORAN,Y.ZHANG,Y.ZHANG,Y.ZHOU,J.A.NIEMAN,M.R.ANUGULA, E.M.KERAMANE,K.SAVARIRAJ,D.S.REDDY,R.SHARMA,R.SUBEDI,R.SINGH, A.OLEARY,N.L.SIMON,P.L.DEMARSH,S.MUSHTAQ,M.WARNER,D.M.LIVERMORE, M.R.K.ALLEY,J.J.PLATTNER LIGASE-RNA COMPLEX, NUCLEOTIDE (ATP) -BINDING, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE, AMINOACYL TRNA SYNTHETASE, ATP BINDING, EDITING SYNTHETASE 2.20 ESCHERICHIA COLI K-12 1R4H NMR SOLUTION STRUCTURE OF THE IIIC DOMAIN OF GB VIRUS B IRES ELEMENT SOLUTION NMR 10-19-04 K.KALUARACHCHI,V.THIVIYANATHAN,R.RIJINBRAND,S.M.LEMON, D.G.GORENSTEIN GB VIRUS B, IRES, HAIRPIN LOOP, RNA synthetic 3J5U STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE PRE- TRANSLOCATION STATE (PRE-TRANSLOCATION 70S*TRNA STRUCTURE, 50S SUBUNIT) ELECTRON MICROSCOPY 12-18-13 A.F.BRILOT,A.A.KOROSTELEV,D.N.ERMOLENKO,N.GRIGORIEFF TRANSLATION, EF-G, SINGLE PARTICLE ANALYSIS, PRE-TRANSLOCATION TRANSLATION COMPLEX, VIOMYCIN 7.60 ESCHERICHIA COLI,ESCHERICHIA COLI 4FXD CRYSTAL STRUCTURE OF YEAST DNA POLYMERASE ALPHA BOUND TO DNA/RNA X-RAY DIFFRACTION 2-27-13 R.L.PERERA,R.TORELLA,S.KLINGE,M.L.KILKENNY,J.D.MAMAN,L.PELLEGRINI DNA POLYMERASE, DNA REPLICATION, TRANSFERASE-DNA-RNA COMPLEX 3.00 synthetic 1Q75 SOLUTION STRUCTURE OF THE DYSKERATOSIS CONGENITA MUTANT P2B HAIRPIN FROM HUMAN TELOMERASE RNA SOLUTION NMR 12-23-03 C.A.THEIMER,L.D.FINGER,J.FEIGON TETRALOOP, PENTALOOP, UUCG, YNMG, RNA synthetic 1YIJ CRYSTAL STRUCTURE OF TELITHROMYCIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-26-05 D.TU,G.BLAHA,P.B.MOORE,T.A.STEITZ TELITHROMYCIN, ANTIBIOTIC COMPLEXES, MUTATED 50S SUBUNITS, RIBOSOME 2.60 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2NUF CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.5-ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-20-07 J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI RIBONUCLEASE III, DSRNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 2.50 synthetic 1J7T COMPLEX BETWEEN PAROMOMYCIN AND THE 16S-RRNA A-SITE AT 2.5 A RESOLUTION X-RAY DIFFRACTION 5-18-02 Q.VICENS,E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.50 synthetic 2EZ6 CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS RNASE III (D44N) COMPLEXED WITH PRODUCT OF DOUBLE-STRANDED RNA PROCESSING X-RAY DIFFRACTION 2-07-06 J.GAN,J.E.TROPEA,B.P.AUSTIN,D.L.COURT,D.S.WAUGH,X.JI RIBONUCLEASE III, DSRNA, RNA PROCESSING, RNA INTERFERENCE, HYDROLASE/RNA COMPLEX 2.05 synthetic 4G6S MINIMAL HAIRPIN RIBOZYME IN THE TRANSITION STATE WITH A38P VARIATION X-RAY DIFFRACTION 8-08-12 J.A.LIBERMAN,J.L.JENKINS,J.KRUCINSKA,J.E.WEDEKIND RNA, STRUCTURE-ACTIVITY RELATIONSHIP, NUCLEIC ACID CONFORMATION 2.84 synthetic,synthetic,synthetic 3ZNE THE CRYSTAL STRUCTURE OF AGMATIDINE TRNA-ILE2 BOUND TO THE 70S RIBOSOME IN THE A AND P SITE. X-RAY DIFFRACTION 4-03-13 R.M.VOORHEES,D.MANDAL,C.NEUBAUER,C.KOEHRER,U.L.RAJBHANDARY, V.RAMAKRISHNAN RIBOSOME, AGMATIDINE, TRNA, TRNAILE2 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3NL0 MUTANT P44S M296I OF FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE X-RAY DIFFRACTION 7-13-11 R.AGUDO,C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,N.VERDAGUER,E.DOMINGO FOOT-AND-MOUTH DISEASE VIRUS PICORNAVIRUS, 3D POLYMERASE, RNA DEPENDENT RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 2.60 synthetic,synthetic 1VOY CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI 2R20 STRUCTURE OF THE RNA BROMINATED TRIDECAMER R(GCGUU- 5BUGAAACGC) AT 1.3 A (BR2) X-RAY DIFFRACTION 9-25-07 Y.TIMSIT,S.BOMBARD ASYMMETRY, METAL ION BINDING, UNSTACKING, ELECTROSTATIC, RNA 1.30 synthetic 2RRC SOLUTION STRUCTURE OF RNA APTAMER AGAINST AML1 RUNT DOMAIN SOLUTION NMR 6-29-11 Y.NOMURA,K.FUJIWARA,M.CHIBA,J.FUKUNAGA,Y.TANAKA,H.IIBUCHI,T.TANAKA, Y.NAKAMURA,G.KAWAI,T.KOZU,T.SAKAMOTO RNA APTAMER, AML1/RUNX1, MOLECULAR MIMICRY, RNA synthetic 3R2D CRYSTAL STRUCTURE OF ANTITERMINATION FACTORS NUSB AND NUSE IN COMPLEX WITH DSRNA X-RAY DIFFRACTION 6-22-11 J.R.STAGNO,X.JI CROSS SPECIES NUSB-NUSE-RNA INTERACTION, TRANSCRIPTION ELONGATION, GENE REGULATION, PROTEIN-RNA INTERACTION, TRANSCRIPTION-RNA COMPLEX 2.20 AQUIFEX AEOLICUS 3AKZ CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA NONDISCRIMINATING GLUTAMYL- TRNA SYNTHETASE IN COMPLEX WITH TRNAGLN AND A GLUTAMYL-AMP ANALOG X-RAY DIFFRACTION 9-29-10 T.ITO,S.YOKOYAMA PROTEIN-RNA COMPLEX, LIGASE-RNA COMPLEX 2.90 synthetic 2ANR CRYSTAL STRUCTURE (II) OF NOVA-1 KH1/KH2 DOMAIN TANDEM WITH 25NT RNA HAIRPIN X-RAY DIFFRACTION 10-24-06 L.MALININA,M.TEPLOVA,K.MUSUNURU,A.TEPLOV,J.C.DARNELL, S.K.BURLEY,R.B.DARNELL,D.J.PATEL PROTEIN-RNA COMPLEX, KH DOMAIN, HAIRPIN, RNA-BINDING PROTEIN/RNA COMPLEX 1.94 synthetic 1UTS DESIGNED HIV-1 TAR BINDING LIGAND SOLUTION NMR 2-12-04 B.DAVIS,A.I.H.MURCHIE,F.ABOUL-ELA,J.KARN HIV-1, TAR RNA, DRUG DESIGN, ANTIVIRAL, LIGAND BINDING, CONFORMATIONAL CHANGE HUMAN IMMUNODEFICIENCY VIRUS 1 1GIY CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX X-RAY DIFFRACTION 5-04-01 M.M.YUSUPOV,G.Z.YUSUPOVA,A.BAUCOM,K.LIEBERMAN,T.N.EARNEST, J.H.D.CATE,H.F.NOLLER RIBOSOME ASSEMBLY, PROTEIN SYNTHESIS, LIFE 5.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4K31 CRYSTAL STRUCTURE OF APRAMYCIN BOUND TO THE LEISHMANIAL RRNA A-SITE X-RAY DIFFRACTION 7-31-13 M.SHALEV,J.KONDO,N.ADIR,T.BAASOV RRNA DUPLEX, RIBOSOMAL A-SITE, AMINOGLYCOSIDE, RIBOSOME, RNA, RNA- ANTIBIOTIC COMPLEX 1.42 LEISHMANIA 4JYA CRYSTAL STRUCTURES OF PSEUDOURIDINILATED STOP CODONS WITH ASLS X-RAY DIFFRACTION 6-26-13 I.S.FERNANDEZ,C.L.NG,A.C.KELLEY,W.GUOWEI,Y.T.YU,V.RAMAKRISHNAN PROTEIN SYNTHESIS, RIBOSOME 3.10 THERMUS THERMOPHILUS,SYNTHETIC CONSTRUCT,SYNTHETIC CONSTRUCT 3J51 E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE PRE- TRANSLOCATION STATE (PRE3, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3HUZ STRUCTURE OF EF-P BOUND TO THE 70S RIBOSOME; THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE II. X-RAY DIFFRACTION 9-29-09 R.E.STANLEY,G.BLAHA TRANSLATION, ELONGATION FACTOR, INITIATION, L1-STALK, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA- BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA- BINDING, METHYLATION, METAL-BINDING, ZINC, RIBOSOME 3.10 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 4B8H CRYSTAL STRUCTURE OF 70S RIBOSOME WITH BOTH COGNATE TRNAS IN THE E AND P SITES REPRESENTING AN AUTHENTIC ELONGATION COMPLEX X-RAY DIFFRACTION 4-03-13 Y.G.GAO,S.FENG,Y.CHEN RIBOSOME, PROTEIN TRANSLATION 3.70 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 2L8H CHEMICAL PROBE BOUND TO HIV TAR RNA SOLUTION NMR 3-23-11 A.DAVIDSON,D.BEGLEY,C.LAU,G.VARANI RNA synthetic 4E59 CRYSTAL STRUCTURE OF GCCGCCGC DUPLEX X-RAY DIFFRACTION 12-12-12 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI ' SLIPPERY DUPLEXES, X-LINKED MENTAL RETARDATION, HUNTINGTON'S DISEASE, MYOTONIC DYSTROPHY TYPE 1, RNA, CCG REPEATS 1.54 synthetic 3UD3 THE C92U MUTANT C-DI-GMP-I RIBOSWITCH BOUND TO PGPA X-RAY DIFFRACTION 1-04-12 K.D.SMITH,S.A.STROBEL RIBOSWITCH, SIGNALING PROTEIN-RNA COMPLEX 3.10 synthetic,synthetic 3GTQ BACKTRACKED RNA POLYMERASE II COMPLEX INDUCED BY DAMAGE X-RAY DIFFRACTION 6-09-09 D.WANG,D.A.BUSHNELL,X.HUANG,K.D.WESTOVER,M.LEVITT, R.D.KORNBERG TRANSCRIPTION, TRANSFERASE, DNA-RNA HYBRID, BACKTRACK, DNA- DIRECTED RNA POLYMERASE, DNA BINDING, ISOPEPTIDE BOND, MAGNESIUM, METAL BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.80 synthetic 1OQ0 P6.1 STEM LOOP FROM THE ACTIVATION DOMAIN OF HTR SOLUTION NMR 5-13-03 T.LEEPER,N.LEULLIOT,G.VARANI NMR, RIBONUCLEOPROTEIN, RNA STRUCTURE, TELOMERASE, TELOMERES synthetic 3UZI CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.30 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 3TZR STRUCTURE OF A RIBOSWITCH-LIKE RNA-LIGAND COMPLEX FROM THE HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE X-RAY DIFFRACTION 3-21-12 S.M.DIBROV,K.DING,N.BRUNN,M.A.PARKER,B.M.BERGDAHL,D.L.WYLES,T.HERMANN INTERNAL LOOP, REGULATORY MOTIF, AMINOBENZIMIDAZOLE BINDING, RNA 2.21 HEPATITIS C VIRUS,HEPATITIS C VIRUS 3O3I CRYSTAL STRUCTURE OF HUMAN HIWI1 PAZ DOMAIN (RESIDUES 277-399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OH AT ITS 3'-END X-RAY DIFFRACTION 1-12-11 Y.TIAN,D.K.SIMANSHU,J.-B.MA,D.J.PATEL PIWI, PAZ, RNA SILENCING, PI-RNA, HIWI1, HILI, PAZ DOMAIN, RNA BINDING PROTEIN 2.80 synthetic 1GAX CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE X-RAY DIFFRACTION 12-06-00 S.FUKAI,O.NUREKI,S.SEKINE,A.SHIMADA,J.TAO,D.G.VASSYLYEV, S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) PROTEIN-RNA COMPLEX, ROSSMANN FOLD, COILED COIL, TRNA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 2.90 synthetic 1S03 THE STRUCTURE OF A RIBOSOMAL PROTEIN S8/SPC OPERON MRNA COMPLEX X-RAY DIFFRACTION 5-25-04 H.J.MERIANOS,J.WANG,P.B.MOORE PROTEIN-RNA COMPLEX, RIBOSOMAL, SPC OPERON, TRANSCRIPTION/RNA COMPLEX 2.70 synthetic 1RNK THE STRUCTURE OF AN RNA PSEUDOKNOT THAT CAUSES EFFICIENT FRAMESHIFTING IN MOUSE MAMMARY TUMOR VIRUS SOLUTION NMR 2-27-95 L.X.SHEN,I.TINOCO JUNIOR RNA, NMR, MOUSE MAMMARY TUMOR VIRUS, PSEUDOKNOT synthetic 3JQ4 THE STRUCTURE OF THE COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM D. RADIODURANS WITH THE ANTIBIOTIC LANKACIDIN X-RAY DIFFRACTION 9-08-10 A.-N.TAMAR,M.INBAL,D.CHEN,B.ANAT,R.HAIM,Y.ADA RIBOSOME STRUCTURE, ANTIBIOTICS, LANKACIDIN, LANKAMYCIN, PROTEIN SYNTHESIS, INHIBITORS, SYNERGISM, MACROLIDE, RNA 3.52 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3T4B CRYSTAL STRUCTURE OF THE HCV IRES PSEUDOKNOT DOMAIN X-RAY DIFFRACTION 10-12-11 K.E.BERRY,S.WAGHRAY,S.A.MORTIMER,Y.BAI,J.A.DOUDNA PSEUDOKNOT, FOUR-WAY JUNCTION, HCV IRES CENTRAL DOMAIN, RNA 3.55 HEPATITIS C VIRUS, SYNTHETIC CONSTRUCT 1ARJ ARG-BOUND TAR RNA, NMR SOLUTION NMR 11-08-96 F.ABOUL-ELA,G.VARANI,J.KARN NMR PEPTIDE-BOUND STRUCTURE, NUCLEIC ACIDS, COMPLEX (RNA/PEPTIDE) synthetic 2PN4 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS IRES SUBDOMAIN IIA X-RAY DIFFRACTION 4-01-08 Q.ZHAO,Q.HAN,C.R.KISSINGER,P.A.THOMPSON HCV, IRES, SUBDOAMIN IIA, RNA, STRONTIUM, HEPATITIS, CRYSTAL STRUCTURE 2.32 synthetic,synthetic 3O58 YEAST 80S RIBOSOME. THIS ENTRY CONSISTS OF THE 60S SUBUNIT OF THE FIRST 80S IN THE ASYMMETRIC UNIT. X-RAY DIFFRACTION 12-15-10 A.BEN-SHEM,L.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOMAL RNA AND PROTEINS, RIBOSOME 4.00 SACCHAROMYCES CEREVISIAE S288C,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 3RW6 STRUCTURE OF NUCLEAR RNA EXPORT FACTOR TAP BOUND TO CTE RNA X-RAY DIFFRACTION 8-10-11 M.TEPLOVA,N.W.KHIN,D.J.PATEL,E.IZAURRALDE RETROVIRAL CONSTITUTIVE TRANSPORT ELEMENT (CTE), RNA RECOGNITION MOTIF (RRM), LEUCINE-RICH REPEAT (LRR) MOTIF, TRANSPORT PROTEIN-RNA COMPLEX 2.30 synthetic 1PNX CRYSTAL STRUCTURE OF THE WILD TYPE RIBOSOME FROM E. COLI, 30S SUBUNIT OF 70S RIBOSOME. THIS FILE, 1PNX, CONTAINS ONLY MOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50S SUBUNIT IS IN THE PDB FILE 1PNY. X-RAY DIFFRACTION 7-15-03 A.VILA-SANJURJO,W.K.RIDGEWAY,V.SEYMANER,W.ZHANG,S.SANTOSO, K.YU,J.H.D.CATE S RIBOSOMAL SUBUNIT, PROTEIN-PROTEIN COMPLEX, PROTEIN-RNA COMPLEX, RNA-RNA COMPLEX, RIBOSOME 9.50 ESCHERICHIA COLI 3F30 CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, COBALT HEXAMMINE SOAK. X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG FMN, RIBOSWITCH, TRANSCRIPTION, COBALT HEXAMINE, RNA 3.15 synthetic 1H3E TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH WILD-TYPE TRNATYR(GUA) AND WITH ATP AND TYROSINOL X-RAY DIFFRACTION 10-27-02 S.CUSACK,A.YAREMCHUK,I.KRIKLIVYI,M.TUKALO LIGASE, CLASS I AMINOACYL-TRNA SYNTHETASE: ATP + L-TYROSINE + TRNA(TYR) -> AMP + PPI + L-TYROSYL-TRNA(TYR) 2.9 THERMUS THERMOPHILUS 2E9R FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA AND WITH RIBAVIRIN X-RAY DIFFRACTION 6-26-07 C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO, N.VERDAGUER FOOT-AND-MOUTH DISEASE VIRUS, RNA-DEPENDENT RNA POLYMERASE, 3D POLYMERASE, POLYMERASE, TRANSFERASE/RNA COMPLEX 2.81 synthetic,synthetic 4AQ7 TERNARY COMPLEX OF E. COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND LEUCYL-ADENYLATE ANALOGUE IN THE AMINOACYLATION CONFORMATION X-RAY DIFFRACTION 6-13-12 A.PALENCIA,T.CREPIN,M.T.VU,T.L.LINCECUM JR,S.A.MARTINIS, S.CUSACK LIGASE-RNA COMPLEX, LIGASE, NUCLEOTIDE(ATP)-BINDING, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, METAL-BINDING 2.50 ESCHERICHIA COLI 1KKA SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE) SOLUTION NMR 7-17-02 J.CABELLO-VILLEGAS,M.E.WINKLER,E.P.NIKONOWICZ RNA STEM-LOOP, TRINUCLEOTIDE LOOP, HAIRPIN synthetic 4FE5 CRYSTAL STRUCTURE OF THE XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN IN COMPLEX WITH HYPOXANTHINE X-RAY DIFFRACTION 6-27-12 C.D.STODDARD,J.J.TRAUSCH,J.WIDMANN,J.MARCANO,R.KNIGHT,R.T.BATEY THREE-WAY JUNCTION WITH DISTAL TERTIARY INTERACTION, GENE REGULATORY ELEMENT, HYPOXANTHINE, RNA 1.32 synthetic 3OGY STRUCTURE OF THE THERMUS THERMOPHILUS RIBOSOME COMPLEXED WITH CHLORAMPHENICOL. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, CHLORAMPHENICOL, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS 1ANR CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES SOLUTION NMR 1-11-97 F.ABOUL-ELA,G.VARANI,J.KARN FREE TAR RNA, HIV-1, RNA-PROTEIN COMPLEX, TAT, NMR, RIBONUCLEIC ACID synthetic 8PSH HIGH RESOLUTION NMR STRUCTURE OF THE STEREOREGULAR (ALL-RP)- PHOSPHOROTHIOATE-DNA/RNA HYBRID D (G*PS*C*PS*G*PS*T*PS*C*PS*A*PS*G*PS*G)R(CCUGACGC), MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 5-27-98 M.BACHELIN,G.HESSLER,G.KURZ,J.G.HACIA,P.B.DERVAN,H.KESSLER OLIGONUCLEOTIDE, DNA-RNA HYBRID, PHOSPHOROTHIOATE, THIONUCLEOTIDE, ANTISENSE synthetic 301D CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MG(II)-SOAKED X-RAY DIFFRACTION 1-24-97 W.G.SCOTT,J.B.MURRAY,J.R.P.ARNOLD,B.L.STODDARD,A.KLUG RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP 3.00 synthetic,synthetic 3J5E E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST2B, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1DUQ CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1 X-RAY DIFFRACTION 5-16-00 L.-W.HUNG,E.L.HOLBROOK,S.R.HOLBROOK RRE, HIV-1, REV BINDING DOMAIN, RNA 2.10 synthetic,synthetic 1FFK CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION X-RAY DIFFRACTION 8-14-00 N.BAN,P.NISSEN,J.HANSEN,P.B.MOORE,T.A.STEITZ RIBOSOME ASSEMBLY, RNA-RNA, PROTEIN-RNA, PROTEIN-PROTEIN 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 3BO3 A RELAXED ACTIVE SITE FOLLOWING EXON LIGATION BY A GROUP I INTRON X-RAY DIFFRACTION 4-01-08 S.V.LIPCHOCK,S.A.STROBEL GROUP I INTRON, AZOARCUS, RIBOZYME, LIGATION, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, NUCLEAR PROTEIN/RNA COMPLEX 3.40 HOMO SAPIENS,synthetic,synthetic 1CQ5 NMR STRUCTURE OF SRP RNA DOMAIN IV SOLUTION NMR 8-23-99 U.SCHMITZ,T.L.JAMES,S.BEHRENS,D.M.FREYMANN,P.LUKAVSKY, P.WALTER SRP, RNA STRUCTURE, NMR, DOMAIN IV, SIGNAL SEQUENCE RECOGNITION ESCHERICHIA COLI 3MOJ STRUCTURE OF THE RNA BINDING DOMAIN OF THE BACILLUS SUBTILIS YXIN PROTEIN COMPLEXED WITH A FRAGMENT OF 23S RIBOSOMAL RNA X-RAY DIFFRACTION 8-04-10 J.W.HARDIN,Y.HU,D.B.MCKAY RNA, RNA RECOGNITION MOTIF, RNA BINDING PROTEIN, RIBOSOMAL RNA, RNA BINDING PROTEIN-RNA COMPLEX 2.90 ESCHERICHIA COLI 438D STRUCTURE OF AN RNA DUPLEX R(GGGCGCUCC)2 WITH NON-ADJACENT G.U BASE PAIRS X-RAY DIFFRACTION 5-12-99 K.SHI,M.C.WAHL,M.SUNDARALINGAM A-RNA, DOUBLE HELIX, MISMATCHED 2.50 synthetic 1Q2R CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERMEDIATE X-RAY DIFFRACTION 9-09-03 W.XIE,X.LIU,R.H.HUANG TIM BARREL, PROTEIN-RNA COMPLEX, COVALENT INTERMEDIATE, TRANSFERASE/RNA COMPLEX 2.90 synthetic 4IO9 CRYSTAL STRUCTURE OF COMPOUND 4D BOUND TO LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 3-06-13 S.HAN,E.S.MARR RIBOSOME-RIBOSOME INHIBITOR COMPLEX 3.20 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 2VOO CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER UUUUUUUU X-RAY DIFFRACTION 5-06-08 O.KOTIK-KOGAN,E.R.VALENTINE,D.SANFELICE,M.R.CONTE,S.CURRY RNA-BINDING PROTEIN, RNA RECOGNITION MOTIF, SYSTEMIC LUPUS ERYTHEMATOSUS, PHOSPHOPROTEIN, RNA MATURATION, RNA BINDING PROTEIN, NUCLEUS, LA MOTIF, RNA-BINDING, POLYMORPHISM 1.8 HOMO SAPIENS 2U2A STEM LOOP IIA FROM U2 SNRNA OF SACCHAROMYCES CEREVISIAE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 3-04-98 S.C.STALLINGS,P.B.MOORE PRE-MRNA SPLICING, U2SNRNA, NMR, U-TURN, RNA-PROTEIN INTERACTIONS, RIBONUCLEIC ACID SACCHAROMYCES CEREVISIAE 2NVX RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'- DUTP X-RAY DIFFRACTION 12-19-06 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.60 synthetic 4BYS CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX ELECTRON MICROSCOPY 11-20-13 I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, S.H.W.SCHERES RIBOSOME, RIBOSOME INITIATION COMPLEX, INITIATOR FACTOR EIF5B 4.30 SACCHAROMYCES CEREVISIAE 4K0K CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A SERINE-ASL AND MRNA CONTAINING A STOP CODON X-RAY DIFFRACTION 6-26-13 I.S.FERNANDEZ,C.L.NG,A.C.KELLEY,W.GUOWEI,Y.T.YU,V.RAMAKRISHNAN RIBOSOMAL SUBUNIT, TRANSLATION, RIBOSOME 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,SYNTHETIC CONSTRUCT 4FY8 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 3J4W E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN CLASSIC PRE- TRANSLOCATION STATE (PRE1B, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1TRJ HOMOLOGY MODEL OF YEAST RACK1 PROTEIN FITTED INTO 11.7A CRYO-EM MAP OF YEAST 80S RIBOSOME ELECTRON MICROSCOPY 9-28-04 J.SENGUPTA,J.NILSSON,R.GURSKY,C.M.SPAHN,P.NISSEN,J.FRANK RACK1, RIBOSOME, HOMOLOGY MODEL, CRYO-ELECTRON MICROSCOPY, SIGNALING PROTEIN 11.70 synthetic,synthetic 1NTS '(DCCPUPCPCPUPUP)3':3'(RAGGAGGAAA)5', WHERE P=PROPYNYL SOLUTION NMR 6-10-03 B.M.ZNOSKO,T.W.BARNES III,T.R.KRUGH,D.H.TURNER DNA, RNA, HYBRID, PROPYNYL, RNA/DNA COMPLEX synthetic 3O30 YEAST 80S RIBOSOME. THIS ENTRY CONSISTS OF THE 40S SUBUNIT OF THE SECOND 80S IN THE ASYMMETRIC UNIT. X-RAY DIFFRACTION 12-15-10 A.BEN-SHEM,L.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOMAL RRNA AND PROTEINS, TRANSLATING THE GENETIC CODE TO PROTEINS, RIBOSOME, EUKARYOTIC, YEAST 4.00 SACCHAROMYCES CEREVISIAE 4K27 MYOTONIC DYSTROPHY TYPE 2 RNA: STRUCTURAL STUDIES AND DESIGNED SMALL MOLECULES THAT MODULATE RNA FUNCTION X-RAY DIFFRACTION 11-27-13 H.PARK,J.LOHMAN,M.D.DISNEY A-FORM RNA, MYOTONIC DYSTROPHY TYPE 2, UNKNOWN, RNA 2.35 synthetic 4B3O STRUCTURES OF HIV-1 RT AND RNA-DNA COMPLEX REVEAL A UNIQUE RT CONFORMATION AND SUBSTRATE INTERFACE X-RAY DIFFRACTION 1-16-13 M.LAPKOUSKI,L.TIAN,J.T.MILLER,S.F.J.LE GRICE,W.YANG HYDROLASE-DNA-RNA COMPLEX, RNASE H, SUBUNIT INTERFACE 3.30 SYNTHETIC CONSTRUCT 2OIY CRYSTAL STRUCTURE OF THE DUPLEX FORM OF THE HIV-1(LAI) RNA DIMERIZATION INITIATION SITE X-RAY DIFFRACTION 12-25-07 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, DIS, RNA, DIMERIZATION 1.60 synthetic 3ZLA CRYSTAL STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM BUNYAMWERA VIRUS BOUND TO RNA X-RAY DIFFRACTION 5-01-13 A.ARIZA,S.J.TANNER,C.T.WALTER,K.C.DENT,D.A.SHEPHERD,W.WU, S.V.MATTHEWS,J.A.HISCOX,T.J.GREEN,M.LUO,R.M.ELLIOT,A.E.ASHCROFT, N.J.STONEHOUSE,N.A.RANSON,J.N.BARR,T.A.EDWARDS VIRAL PROTEIN-RNA COMPLEX 3.20 ESCHERICHIA COLI 4L8R STRUCTURE OF MRNA STEM-LOOP, HUMAN STEM-LOOP BINDING PROTEIN AND 3'HEXO TERNARY COMPLEX X-RAY DIFFRACTION 7-10-13 D.TAN,L.TONG RNA-RNA BINDING PROTEIN-HYDROLASE COMPLEX, HISTONE MRNA 3'-END PROCESSING, HISTONE MRNA TRANSLATION, MICRORNA HOMEOSTASIS, 5.8S RRNA 3 -END MATURATION, ZFP100, LSM11, NUCLEUS 2.60 synthetic 3PU4 CRYSTAL STRUCTURE OF A VESICULAR STOMATITIS VIRUS NUCLEOCAPSID-POLYU COMPLEX X-RAY DIFFRACTION 1-12-11 M.LUO,T.J.GREEN,M.ROWSE RNA, NUCLEOCAPSID, VIRAL PROTEIN-RNA COMPLEX 3.00 synthetic 3O2Z YEAST 80S RIBOSOME. THIS ENTRY CONSISTS OF THE 40S SUBUNIT OF THE FIRST 80S IN THE ASYMMETRIC UNIT. X-RAY DIFFRACTION 12-15-10 A.BEN-SHEM,L.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOMAL RRNA AND PROTEINS, TRANSLATING THE GENETIC CODE TO PROTEINS, RIBOSOME, EUKARYOTIC, YEAST 4.00 SACCHAROMYCES CEREVISIAE 2HOJ CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO THIAMINE PYROPHOSPHATE, MANGANESE IONS X-RAY DIFFRACTION 9-19-06 T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; RIBOSWITCH 2.50 synthetic 1XNQ STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX IN THE CONTEXT OF THE DECODING CENTER X-RAY DIFFRACTION 12-14-04 F.V.MURPHY,V.RAMAKRISHNAN RIBOSOME, DECODING, TRANSLATION, INOSINE 3.05 THERMUS THERMOPHILUS,synthetic,synthetic 1H4S PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG) AND A PROLYL-ADENYLATE ANALOGUE X-RAY DIFFRACTION 6-18-01 A.YAREMCHUK,M.TUKALO,S.CUSACK AMINOACYL-TRNA SYNTHETASE, ATP + L-PROLINE + TRNA(PRO) AMP + PPI + L-PROLYL-TRNA(PRO), CLASS II AMINOACYL-TRNA SYNTHETASE 2.85 THERMUS THERMOPHILUS 2K3Z NMR STRUCTURE OF ADENOSINE BULGED RNA DUPLEX WITH C:G-A TRIPLE SOLUTION NMR 11-04-08 L.POPENDA,L.BIELECKI,Z.GDANIEC,R.W.ADAMIAK RNA, DUPLEX, ADENOSINE BULGE, NMR synthetic,synthetic 3OVB HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE IN POSITION 76 OF TRNA X-RAY DIFFRACTION 12-01-10 B.C.PAN,Y.XIONG,T.A.STEITZ PROTEIN-RNA, ROSSMANN FOLD, CCA-ADDING, TRNA, NUCLEOTIDYLTRANSFER, TRANSFERASE-RNA COMPLEX 1.95 synthetic 2K66 NMR SOLUTION STRUCTURE OF THE D3'-STEM CLOSED BY A GAAA TETRALOOP OF THE GROUP II INTRON SC.AI5(GAMMA) SOLUTION NMR 7-14-09 D.KRUSCHEL,R.K.O.SIGEL GROUP II INTRON, RIBOZYME, SPLICING, D3'-STEM, GAAA TETRALOOP, RNA 22-MER, HAIRPIN, NMR synthetic 2O81 THE STRUCTURE OF TANDEM GA RNA PAIRS WHEN FLANKING PAIRS ARE ISOG-ISOC PAIRS SOLUTION NMR 7-10-07 G.CHEN,D.H.TURNER RNA, THERMODYNAMICS, SECONDARY STRUCTURE PREDICTION, SHEARED GA PAIR, ISOGUANOSINE, ISOCYTIDINE synthetic 3PHP STRUCTURE OF THE 3' HAIRPIN OF THE TYMV PSEUDOKNOT: PREFORMATION IN RNA FOLDING SOLUTION NMR 10-21-98 M.H.KOLK,M.VAN DER GRAAF,S.S.WIJMENGA,C.W.A.PLEIJ,H.A.HEUS, C.W.HILBERS RNA, PSEUDOKNOT, TYMV, RIBONUCLEIC ACID synthetic 3K1V COCRYSTAL STRUCTURE OF A MUTANT CLASS-I PREQ1 RIBOSWITCH X-RAY DIFFRACTION 10-06-09 D.J.KLEIN,T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; APTAMER; RIBOSWITCH; QUEUOSINE; PREQ1 2.20 synthetic 3J2C DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 13.20 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1MJI DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX X-RAY DIFFRACTION 1-21-03 A.PEREDERINA,N.NEVSKAYA,O.NIKONOV,A.NIKULIN,P.DUMAS,M.YAO, I.TANAKA,M.GARBER,G.GONGADZE,S.NIKONOV RIBOSOMAL PROTEIN - 5S RRNA COMPLEX, RIBOSOME 2.50 ESCHERICHIA COLI 3CCR STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION A2488C. DENSITY FOR ANISOMYCIN IS VISIBLE BUT NOT INCLUDED IN THE MODEL. X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL A2488C MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 4JI4 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING, RIBOSOME-ANTIBIOTIC COMPLEX 3.69 THERMUS THERMOPHILUS 1SCL THE SARCIN-RICIN LOOP, A MODULAR RNA SOLUTION NMR 1-26-95 A.A.SZEWCZAK,P.B.MOORE RNA, NMR, SARCIN-RICIN LOOP RATTUS NORVEGICUS 1BYX CHIMERIC HYBRID DUPLEX R(GCAGUGGC).R(GCCA)D(CTGC) COMPRISING THE TRNA-DNA JUNCTION FORMED DURING INITIATION OF HIV-1 REVERSE TRANSCRIPTION SOLUTION NMR 10-20-99 T.SZYPERSKI,M.GOETTE,M.BILLETER,E.PEROLA,L.CELLAI RNA:RNA-DNA CHIMERIC HYBRID, RNASE H, REVERSE TRANSCRIPTASE, DNA/RNA COMPLEX, DNA-RNA HYBRID synthetic 2B57 GUANINE RIBOSWITCH C74U MUTANT BOUND TO 2,6-DIAMINOPURINE X-RAY DIFFRACTION 5-23-06 S.D.GILBERT,C.D.STODDARD,S.J.WISE,R.T.BATEY RNA-LIGAND COMPLEX, DOUBLE HELIX, BASE TRIPLES, BASE QUADRUPLES, MRNA, PURINE 2.15 synthetic 1R2W COORDINATES OF L11 WITH 58NTS OF 23S RRNA FITTED INTO THE CRYO-EM MAP OF THE 70S RIBOSOME ELECTRON MICROSCOPY 11-04-03 M.VALLE,A.ZAVIALOV,W.LI,S.M.STAGG,J.SENGUPTA,R.C.NIELSEN, P.NISSEN,S.C.HARVEY,M.EHRENBERG,J.FRANK RNA, RIBOSOMAL PROTEIN, RNA BINDING PROTEIN/RNA COMPLEX 9.00 synthetic 3C44 CRYSTAL STRUCTURE OF HIV-1 SUBTYPE F DIS EXTENDED DUPLEX RNA BOUND TO PAROMOMYCIN X-RAY DIFFRACTION 5-06-08 S.FREISZ,E.ENNIFAR,P.DUMAS HIV-1, RNA, ANTIBIOTIC, PAROMOMYCIN, EXTENDED DUPLEX 2.00 synthetic 4DR3 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS (HB8) 30S RIBOSOMAL SUBUNIT WITH STREPTOMYCIN BOUND X-RAY DIFFRACTION 11-14-12 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.35 THERMUS THERMOPHILUS 1K4A STRUCTURE OF AGAA RNA TETRALOOP, NMR, 20 STRUCTURES SOLUTION NMR 12-19-01 H.WU,P.K.YANG,S.E.BUTCHER,S.KANG,G.CHANFREAU,J.FEIGON RIBONUCLEIC ACID, TETRALOOP, RNA synthetic 2OB7 STRUCTURE OF TMRNA-(SMPB)2 COMPLEX AS INFERRED FROM CRYO-EM ELECTRON MICROSCOPY 1-23-07 J.FRANK,B.FELDEN,R.GILLET,W.LI TMRNA, SMPB, RNA BINDING PROTEIN/RNA COMPLEX 13.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4FNJ UTILIZING THE GAAA TETRALOOP/RECEPTOR TO FACILITATE CRYSTAL PACKING AND STRUCTURE DETERMINATION OF A CUG RNA HELIX X-RAY DIFFRACTION 10-17-12 L.A.COONROD,J.R.LOHMAN,J.A.BERGLUND CUG REPEAT GAAA TETRALOOP/RECEPTOR, TOXIC RNA, RNA 1.95 SYNTHETIC CONSTRUCT 3HHN CRYSTAL STRUCTURE OF CLASS I LIGASE RIBOZYME SELF-LIGATION PRODUCT, IN COMPLEX WITH U1A RBD X-RAY DIFFRACTION 11-24-09 D.M.SHECHNER,R.A.GRANT,S.C.BAGBY,D.P.BARTEL LIGASE RIBOZYME, RIBOZYME, CATALYTIC RNA, PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, RNA-BINDING, LIGASE/RNA COMPLEX 2.99 HOMO SAPIENS 1K8W CRYSTAL STRUCTURE OF THE E. COLI PSEUDOURIDINE SYNTHASE TRUB BOUND TO A T STEM-LOOP RNA X-RAY DIFFRACTION 12-31-01 C.HOANG,A.R.FERRE-D'AMARE PROTEIN-RNA COMPLEX, T STEM-LOOP, TRNA, LYASE/RNA COMPLEX 1.85 synthetic 1IVS CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE X-RAY DIFFRACTION 2-11-03 S.FUKAI,O.NUREKI,S.-I.SEKINE,A.SHIMADA,D.G.VASSYLYEV, S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) ROSSMANN FOLD, HELIX BUNDLE, COILED COIL, BETA BARREL, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, LIGASE/RNA COMPLEX 2.90 synthetic 2XSL THE CRYSTAL STRUCTURE OF A THERMUS THERMOPHILUS TRNAGLY ACCEPTOR STEM MICROHELIX AT 1.6 ANGSTROEM RESOLUTION X-RAY DIFFRACTION 8-10-11 D.OBERTHUER,A.EICHERT,V.A.ERDMANN,J.P.FUERSTE,C.BETZEL,C.FOERSTER RNA, IDENTITY ELEMENTS, GLYCYL-TRNA SYNTHETASE (GLYRS), RNA HYDRATION 1.59 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3CZW X-RAY STRUCTURES OF THE (GUGGUCUGAUGAGGCC) RNA DUPLEX X-RAY DIFFRACTION 9-09-08 W.RYPNIEWSKI,D.A.ADAMIAK,J.MILECKI,R.W.ADAMIAK RNA, DUPLEX, BASE PAIRING, G(SYN) - G(ANTI), SULPHATE ANION 1.40 synthetic 3V6Y CRYSTAL STRUCTURE OF FBF-2 IN COMPLEX WITH A MUTANT GLD-1 FBEA13 RNA X-RAY DIFFRACTION 1-04-12 C.QIU,A.KERSHNER,Y.WANG,C.H.HOLLEY,D.WILINSKI,S.KELES,J.KIMBLE, M.WICKENS,T.M.T.HALL PUF REPEATS, RNA BINDING PROTEIN-RNA COMPLEX 2.50 CAENORHABDITIS ELEGANS 1QBP CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS X-RAY DIFFRACTION 11-26-99 A.C.ANDERSON,R.H.O'NEIL,D.J.FILMAN,C.A.FREDERICK BROMINATED CYTOSINE, MISMATCHED BASE PAIRS, RNA 2.10 synthetic 3J16 MODELS OF RIBOSOME-BOUND DOM34P AND RLI1P AND THEIR RIBOSOMAL BINDING PARTNERS ELECTRON MICROSCOPY 2-22-12 T.BECKER,S.FRANCKENBERG,S.WICKLES,C.J.SHOEMAKER,A.M.ANGER,J.- P.ARMACHE,H.SIEBER,C.UNGEWICKELL,O.BERNINGHAUSEN,I.DABERKOW, A.KARCHER,M.THOMM,K.-P.HOPFNER,R.GREEN,R.BECKMANN RIBOSOME RECYCLING, TRANSLATION, EUKARYA, RIBOSOME 10 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 2B9O S RIBOSOMAL SUBUNIT, TRNAS AND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A STOP CODON IN THE A-SITE. THIS FILE CONTAINS THE 30S SUBUNIT, TRNAS AND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A STOP CODON IN THE A-SITE AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 1-10-06 S.PETRY,D.E.BRODERSEN,F.V.MURPHY IV,C.M.DUNHAM,M.SELMER, M.J.TARRY,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRANSLATION 6.46 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 4AM3 CRYSTAL STRUCTURE OF C. CRESCENTUS PNPASE BOUND TO RNA X-RAY DIFFRACTION 4-18-12 S.W.HARDWICK,T.GUBBEY,I.HUG,U.JENAL,B.F.LUISI TRANSFERASE-RNA COMPLEX, KH DOMAIN, RNASE E 3.00 ESCHERICHIA COLI 2PXP VARIANT 13 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.50 ESCHERICHIA COLI 2ZUF CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII ARGINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(ARG) X-RAY DIFFRACTION 8-18-09 M.KONNO,T.SUMIDA,E.UCHIKAWA,Y.MORI,T.YANAGISAWA,S.SEKINE, S.YOKOYAMA RRS/TRNA(ARG), AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, CYTOPLASM, LIGASE, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE/RNA COMPLEX 2.30 synthetic 3GTG BACKTRACKED RNA POLYMERASE II COMPLEX WITH 12MER RNA X-RAY DIFFRACTION 6-09-09 D.WANG,D.A.BUSHNELL,X.HUANG,K.D.WESTOVER,M.LEVITT, R.D.KORNBERG TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRID, DNA-DIRECTED RNA POLYMERASE, DNA BINDING, ISOPEPTIDE BOND, MAGNESIUM, METAL BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, TRANSFERASE/DNA/RNA HYBRID COMPLEX 3.78 synthetic 2G92 CRYSTAL STRUCTURE ANALYSIS OF THE RNA DODECAMER CGC-(NF2)- AAUUAGCG, WITH AN INCORPORATED 2,4-DIFLUOROTOLUYL RESIDUE (NF2) X-RAY DIFFRACTION 4-18-06 M.EGLI,F.LI , 4-DIFLUOROTOLUYL NUCLEOSIDE, CHEMICAL MODIFICATION, RNA, RNA INTERFERENCE, HYDROGEN BONDING 1.61 synthetic 3J0Z STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (30S RIBOSOME OF CLASS 5 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2KG0 STRUCTURE OF THE SECOND QRRM DOMAIN OF HNRNP F IN COMPLEX WITH A AGGGAU G-TRACT RNA SOLUTION NMR 6-09-10 F.H.T.ALLAIN,C.DOMINGUEZ PROTEIN-RNA COMPLEX, G TRACT, SPLICING REGULATION, POLYADENYLATION REGULATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, RNA BINDING PROTEIN-RNA COMPLEX synthetic 3V6U CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME RAM MUTATION G347U. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT X-RAY DIFFRACTION 4-24-13 C.E.FAGAN,J.A.DUNKLE,T.MAEHIGASHI,C.M.DUNHAM PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, RIBOSOMAL AMBIGUITY MUTATIONS, RAM, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, PAROMOMYCIN AS CRYSTALLIZATION AGENT, RIBOSOME 3.90 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2M12 SOLUTION STRUCTURE OF THE ID3 STEM LOOP OF DOMAIN 1 OF THE AI5GAMMA GROUP II INTRON SOLUTION NMR 10-23-13 M.POPOVIC,N.L.GREENBAUM EBS1, STEM LOOP, ID3, RNA synthetic 2KX5 RECOGNITION OF HIV TAR RNA BY PEPTIDE MIMETIC OF TAT PROTEIN SOLUTION NMR 7-07-10 A.DAVIDSON,K.PATORA-KOMISARSKA,J.ROBINSON,G.VARANI HIV-1 TAR, TAT, RNA RECOGNITION, IMMUNODEFICIENCY VIRUS; TAR RNA, RNA BINDING PROTEIN-RNA COMPLEX synthetic 3MJB CRICKET PARALYSIS VIRUS IGR IRES DOMAIN 3 RNA BOUND TO SULFATE X-RAY DIFFRACTION 5-19-10 J.S.KIEFT,B.L.GOLDEN,D.A.COSTANTINO,E.CHASE RNA PSEUDOKNOT, ANIONS, SULFATE, RNA 2.80 synthetic,synthetic 2H0S PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA, RIBOZYME, PSEUDOKNOT, HELIX 2.35 synthetic 4BPP THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A - COMPLEX 4 X-RAY DIFFRACTION 7-17-13 M.WEISSER,F.VOIGTS-HOFFMANN,J.RABL,M.LEIBUNDGUT,N.BAN RIBOSOME, TRANSLATION 3.70 TETRAHYMENA THERMOPHILA 2LBR CONFORMATION EFFECTS OF BASE MODIFICATION ON THE ANTICODON STEM-LOOP OF BACILLUS SUBTILIS TRNATYR SOLUTION NMR 8-03-11 A.P.DENMON,J.WANG,E.P.NIKONOWICZ TYROSYL-TRNA, RNA synthetic 1R3O CRYSTAL STRUCTURE OF THE FIRST RNA DUPLEX IN L-CONFORMATION AT 1.9A RESOLUTION X-RAY DIFFRACTION 12-23-03 M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,W.RYPNIEWSKI,V.A.ERDMANN, C.BETZEL L-RNA 1.90 synthetic,synthetic 359D INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III) X-RAY DIFFRACTION 11-07-97 A.L.FEIG,W.G.SCOTT,O.C.UHLENBECK RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP 2.90 synthetic,synthetic 1XWU SOLUTION STRUCTURE OF ACAUAGA LOOP SOLUTION NMR 2-15-05 T.SAKAMOTO,A.OGURO,G.KAWAI,T.OHTSU,Y.NAKAMURA HAIRPIN LOOP, RNA synthetic 3DF1 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH HYGROMYCIN B. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH HYGROMYCIN B BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-19-08 M.A.BOROVINSKAYA,S.SHOJI,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI 4JVH STRUCTURE OF THE STAR DOMAIN OF QUAKING PROTEIN IN COMPLEX WITH RNA X-RAY DIFFRACTION 5-08-13 M.TEPLOVA,M.HAFNER,D.TEPLOV,K.ESSIG,T.TUSCHL,D.J.PATEL STAR DOMAIN, RNA REGULATOR, TRANSLATION, RNA BINDING PROTEIN 3.50 synthetic 2O3X CRYSTAL STRUCTURE OF THE PROKARYOTIC RIBOSOMAL DECODING SITE COMPLEXED WITH PAROMAMINE DERIVATIVE NB30 X-RAY DIFFRACTION 11-06-07 J.KONDO,M.HAINRICHSON,I.NUDELMAN,D.SHALLOM-SHEZIFI,T.BAASOV, E.WESTHOF AMINOGLYCOSIDE, ANTIBIOTICS, RIBOSOME, DECODING SITE, PROKARYOTE, TRANSLATION INHIBITION, STOP CODON READTHROUGH, RNA 2.90 synthetic 3TVG CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 N.DEMESHKINA,L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.10 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 3PDM HIBISCUS LATENT SINGAPORE FIBER DIFFRACTION 1-12-11 S.K.TEWARY,S.M.WONG,K.SWAMINATHAN HELICAL VIRUS, VIRUS-RNA COMPLEX, VIRUS 3.50 synthetic 2ZY6 CRYSTAL STRUCTURE OF A TRUNCATED TRNA, TPHE39A X-RAY DIFFRACTION 6-30-09 I.TANAKA,M.YAO,Y.TANAKA,Y.KITAGO,S.YMAGATA TRUNCATED TRNA 1.75 synthetic 2QH3 SOLUTION STRUCTURE OF THE U64 H/ACA SNORNA 3' TERMINAL HAIRPIN LOOP SOLUTION NMR 9-25-07 J.FEIGON,C.A.THEIMER,N.CHIM,K.E.BREECE LOOP, SYN G, G-U PAIR, RNA synthetic 4GZZ CRYSTAL STRUCTURES OF BACTERIAL RNA POLYMERASE PAUSED ELONGATION COMPLEXES X-RAY DIFFRACTION 2-13-13 A.WEIXLBAUMER,K.LEON,R.LANDICK,S.A.DARST RNA POLYMERASE, TRANSCRIPTION, PAUSED TRANSCRIPTION ELONGATION COMPLEX, TRANSCRIPTIONAL PAUSING, DNA DIRECTED RNA TRANSCRIPTION', TRANSCRIPTION-DNA-RNA HYBRID COMPLEX 4.29 SYNTHETIC 1UVJ THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 WITH 7NT RNA X-RAY DIFFRACTION 2-19-04 P.S.SALGADO,E.V.MAKEYEV,S.BUTCHER,D.BAMFORD,D.I.STUART, J.M.GRIMES POLYMERASE/COMPLEX, RNA-DEPENDENT RNA POLYMERASE, OLIGONUCLEOTIDE, POLYMERASE 1.9 synthetic 1Q81 CRYSTAL STRUCTURE OF MINIHELIX WITH 3' PUROMYCIN BOUND TO A- SITE OF THE 50S RIBOSOMAL SUBUNIT. X-RAY DIFFRACTION 10-07-03 J.L.HANSEN,T.M.SCHMEING,P.B.MOORE,T.A.STEITZ RIBOSOME 50S, SUBSTRATE ANALOG, MINIHELIX, A-SITE, PROTEIN- PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX 2.95 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 4GMA CRYSTAL STRUCTURE OF THE ADENOSYLCOBALAMIN RIBOSWITCH X-RAY DIFFRACTION 10-17-12 F.E.REYES,J.E.JOHNSON,J.T.POLASKI,R.T.BATEY ADENOSYLCOBALAMIN, RIBOSWITCH, ADOCBL, RNA 3.94 MARINE METAGENOME 2A9X TAR RNA RECOGNITION BY A CYCLIC PEPTIDOMIMETIC OF TAT PROTEIN SOLUTION NMR 11-01-05 T.C.LEEPER,Z.ATHANASSIOU,R.L.DIAS,J.A.ROBINSON,G.VARANI NMR; PEPTIDOMIMETICS; PEPTIDE STRUCTURE, RNA RECOGNITION; IMMUNODEFICIENCY VIRUS; TAR RNA;, RNA BINDING PROTEIN/RNA COMPLEX synthetic 4C9D CAS6 (TTHB231) PRODUCT COMPLEX X-RAY DIFFRACTION 11-06-13 M.JINEK,O.NIEWOEHNER,J.A.DOUDNA HYDROLASE-RNA COMPLEX, CRISPR, RNA PROCESSING RIBONUCLEASE 3.00 THERMUS THERMOPHILUS HB8 1VQL THE STRUCTURE OF THE TRANSITION STATE ANALOGUE "DCSN" BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.30 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 2PY9 PROTEIN-RNA INTERACTION INVOLVING KH1 DOMAIN FROM HUMAN POLY(C)-BINDING PROTEIN-2 X-RAY DIFFRACTION 6-12-07 T.L.JAMES,Z.DU,J.K.LEE PROTEIN-RNA COMPLEX, RNA AND DNA BINDING PROTEIN/RNA COMPLEX 2.56 synthetic 3CXC THE STRUCTURE OF AN ENHANCED OXAZOLIDINONE INHIBITOR BOUND TO THE 50S RIBOSOMAL SUBUNIT OF H. MARISMORTUI X-RAY DIFFRACTION 4-28-09 J.A.IPPOLITO,D.WANG,Z.F.KANYO,E.M.DUFFY S RIBOSOMAL SUBUNIT, OXAZOLIDINONE, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 3U5F THE STRUCTURE OF THE EUKARYOTIC RIBOSOME AT 3.0 A RESOLUTION X-RAY DIFFRACTION 12-21-11 A.BEN-SHEM,N.GARREAU DE LOUBRESSE,S.MELNIKOV,L.JENNER,G.YUSUPOVA, M.YUSUPOV TRANSLATION, RIBOSOME, 40S, 60S, 80S, RIBOSOMAL, RIBOSOMAL RNA, RRNA, RIBOSOMAL PROTEIN, STM1, EUKARYOTIC RIBOSOME, RNA-PROTEIN COMPLEX 3.00 SACCHAROMYCES CEREVISIAE 2GY9 STRUCTURE OF THE 30S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO CRYO-EM MAP EMD-1056 ELECTRON MICROSCOPY 9-26-06 K.MITRA,J.FRANK SECM; NASCENT CHAIN; SIGNAL TRANSDUCTION; RNA WORLD; POLYPEPTIDE EXIT TUNNEL; TRANSLOCATION; RIBOSOME; ELONGATION ARREST 15.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3DIR CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO N6-1-IMINOETHYL-L-LYSINE X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 2.90 synthetic 3EQ3 MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM ELECTRON MICROSCOPY 12-16-08 J.FRANK,W.LI,X.AGIRREZABALA PROTEIN TRANSLATION, TERNARY COMPLEX, A/T-TRNA, AUTOMATED DATA COLLECTION, ACETYLATION, ANTIBIOTIC RESISTANCE, CYTOPLASM, ELONGATION FACTOR, GTP-BINDING, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN BIOSYNTHESIS, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA- BINDING, RRNA-BINDING, TRNA-BINDING, RIBOSOMAL PROTEIN/RNA COMPLEX 10 ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12,ESCHERICHIA COLI K12 2M21 SOLUTION STRUCTURE OF THE TETRAHYMENA TELOMERASE RNA STEM IV TERMINAL LOOP SOLUTION NMR 3-20-13 D.D.CASH,R.J.RICHARDS,H.WU,L.TRANTIREK,C.M.O'CONNOR,J.FEIGON, K.COLLINS HOLOENZYME, PROTOZOAN PROTEINS, RNA, CILIATE, TEMPLATE, GENETIC, REVERSE TRANSCRIPTASE synthetic 3GOT GUANINE RIBOSWITCH C74U MUTANT BOUND TO 2-FLUOROADENINE. X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,F.E.REYES,R.T.BATEY RIBOSWITCH, MRNA, GUANINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, BASE TRIPLE, THREE-WAY JUNCTION 1.95 synthetic 2LV0 SOLUTION STRUCTURE OF HELIX-35 STEM-LOOP FROM E. COLI 23S RRNA SOLUTION NMR 6-26-13 E.P.NIKONOWICZ,J.WANG,S.MORAN,J.DONARSKI RIBOSOME, 23S RRNA, METHYLATION, ERYTHROMYCIN RESISTANCE, RNA synthetic 3A2K CRYSTAL STRUCTURE OF TILS COMPLEXED WITH TRNA X-RAY DIFFRACTION 10-20-09 K.NAKANISHI,L.BONNEFOND,R.ISHITANI,O.NUREKI LIGASE, RNA, PSEUDO-KNOT, LIGASE/RNA COMPLEX 3.65 synthetic 3LQX SRP RIBONUCLEOPROTEIN CORE COMPLEXED WITH COBALT HEXAMMINE X-RAY DIFFRACTION 3-02-10 R.T.BATEY RNA-PROTEIN COMPLEX, SIGNAL RECOGNITION PARTICLE, GTP- BINDING, NUCLEOTIDE-BINDING, RIBONUCLEOPROTEIN, RNA- BINDING, RNA-RNA BINDING PROTEIN COMPLEX 1.93 synthetic 1WNE FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH A TEMPLATE-PRIMER RNA X-RAY DIFFRACTION 8-31-04 C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO, N.VERDAGUER PROTEIN-DNA COMPLEX, FOOT AND MOUTH DISEASE VIRUS, RNA- DEPENDENT RNA POLYMERASE, TRANSFERASE/RNA COMPLEX 3.00 synthetic,synthetic 4JIY RNA THREE-WAY JUNCTION STABILIZED BY A SUPRAMOLECULAR DI-IRON(II) CYLINDER DRUG X-RAY DIFFRACTION 9-04-13 R.K.O.SIGEL,J.A.SCHNABL,E.FREISINGER,B.SPINGLER,M.J.HANNON RNA, THREE-WAY JUNCTION, DRUG-RNA COMPLEX, RNA STRUCTURE RECOGNITION, CYLINDER, SUPRAMOLECULE 1.91 synthetic 1GTR STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE X-RAY DIFFRACTION 2-07-95 M.A.ROULD,J.J.PERONA,T.A.STEITZ COMPLEX (LIGASE/TRNA) 2.50 synthetic 4KJ5 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 1T1O COMPONENTS OF THE CONTROL 70S RIBOSOME TO PROVIDE REFERENCE FOR THE RRF BINDING SITE ELECTRON MICROSCOPY 6-15-04 R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA,T.M.BOOTH, C.M.SPAHN,R.A.GRASSUCCI,A.KAJI,J.FRANK RRF BINDING POSITION ON THE RIBOSOME 12.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3NMA MUTANT P169S OF FOOT-AND-MOUTH DISEASE VIRUS RNA DEPENDENT RNA- POLYMERASE X-RAY DIFFRACTION 5-25-11 R.AGUDO,C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,N.VERDAGUER,E.DOMINGO FOOT-AND-MOUTH DISEASE VIRUS, 3D POLYMERASE RNA-DEPENDENT RNA POLYMERASE, PICORNAVIRUS, RIBAVIRIN, TRANSFERASE-RNA COMPLEX 2.60 synthetic,synthetic 2ZH4 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDCG X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.65 ARCHAEOGLOBUS FULGIDUS 4FEJ CRYSTAL STRUCTURE OF THE A24U MUTANT XPT-PBUX GUANINE RIBOSWITCH APTAMER DOMAIN IN COMPLEX WITH HYPOXANTHINE X-RAY DIFFRACTION 2-27-13 C.D.STODDARD,J.J.TRAUSCH,J.WIDMANN,J.MARCANO,R.KNIGHT,R.T.BATEY THREE-WAY JUNCTION WITH DISTAL TERTIARY INTERACTION, GENETIC REGULATORY ELEMENT, HYPOXANTHINE, RNA 1.50 synthetic 3V74 CRYSTAL STRUCTURE OF FBF-2 IN COMPLEX WITH GLD-1 FBEA13 RNA X-RAY DIFFRACTION 1-04-12 Y.WANG,C.QIU,A.KERSHNER,C.P.HOLLEY,D.WILINSKI,S.KELES,J.KIMBLE, M.WICKENS,T.M.T.HALL PUF PROTEIN, RNA-BINDING POCKET, BASE STACKING, POST-TRANSCRIPTIONAL GENE REGULATION, RNA BINDING PROTEIN-RNA COMPLEX 2.30 CAENORHABDITIS ELEGANS 3GES CRYSTAL STRUCTURE OF THE GUANINE RIBOSWITCH C74U MUTANT BOUND TO 6-O-METHYLGUANINE X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,R.T.BATEY RIBOSWITCH, MRNA, GUANINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, THREE-WAY JUNCTION, BASE TRIPLE 2.15 synthetic 2HOP CRYSTAL STRUCTURE OF AN E. COLI THI-BOX RIBOSWITCH BOUND TO PYRITHIAMINE X-RAY DIFFRACTION 9-19-06 T.E.EDWARDS,A.R.FERRE-D'AMARE RNA; RIBOSWITCH 3.30 synthetic 3ZN9 THE CRYSTAL STRUCTURE OF AGMATIDINE TRNA-ILE2 BOUND TO THE 70S RIBOSOME IN THE A AND P SITE. X-RAY DIFFRACTION 4-03-13 R.M.VOORHEES,D.MANDAL,C.NEUBAUER,C.KOEHRER,U.L.RAJBHANDARY, V.RAMAKRISHNAN RIBOSOME, AGMATIDINE, TRNA, TRNAILE2 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1VS6 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH THE ANTIBIOTIC KASUGAMYIN AT 3.5A RESOLUTION. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-26-06 B.S.SCHUWIRTH,A.VILA-SANJURJO,J.H.D.CATE RIBOSOME, KASUGAMYCIN 3.46 ESCHERICHIA COLI,ESCHERICHIA COLI 1AQ3 BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX X-RAY DIFFRACTION 12-24-97 S.VAN DEN WORM,N.STONEHOUSE,K.VALEGARD,L.LILJAS COMPLEX (COAT PROTEIN/RNA),COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.80 ENTEROBACTERIO PHAGE MS2 2KMJ HIGH RESOLUTION NMR SOLUTION STRUCTURE OF A COMPLEX OF HIV-2 TAR RNA AND A SYNTHETIC TRIPEPTIDE IN A 1:2 STOICHIOMETRY SOLUTION NMR 8-18-09 J.FERNER,M.SUHARTONO,S.BREITUNG,H.R.A.JONKER,M.HENNIG, J.WOEHNERT,M.GOEBEL,H.SCHWALBE RNA-LIGAND COMPLEX, BINDING STOICHIOMETRY, HIV-2 TAR, RNA/PEPTIDE COMPLEX HUMAN IMMUNODEFICIENCY VIRUS 2 2R93 ELONGATION COMPLEX OF RNA POLYMERASE II WITH A HEPATITIS DELTA VIRUS-DERIVED RNA STEM LOOP X-RAY DIFFRACTION 11-27-07 E.LEHMANN,F.BRUECKNER,P.CRAMER TRANSFERASE/DNA/RNA, DNA-BINDING, PHOSPHORYLATION, RNA POLYMERASE II, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSFERASE, TRANSCRIPTION, RNA-DEPENDENT, RNA-DEPENDENT RNA SYNTHESIS, RDRP, DDRP, RNA-BINDING, HEPATITIS DELTA VIRUS, HDV, DNA- DIRECTED RNA POLYMERASE, MAGNESIUM, NUCLEOTIDYLTRANSFERASE, NUCLEUS, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, MRNA PROCESSING, TRANSFERASE/RNA COMPLEX 4.00 synthetic 4JAH CRYSTAL STRUCTURE OF 2-SELENOURIDINE CONTAINING RNA X-RAY DIFFRACTION 1-29-14 S.JIANG,J.GAN,H.SUN,Z.HUANG -SELENOURIDINE, HIGH FIDELITY BASE PAIRING, RNA 1.50 synthetic 3CW6 E. COLI INITIATOR TRNA X-RAY DIFFRACTION 9-02-08 P.BARRAUD,E.SCHMITT,Y.MECHULAM,F.DARDEL,C.TISNE TRNA, INITIATOR 3.30 ESCHERICHIA COLI 3R1L CRYSTAL STRUCTURE OF THE CLASS I LIGASE RIBOZYME-SUBSTRATE PRELIGATION COMPLEX, C47U MUTANT, MG2+ BOUND X-RAY DIFFRACTION 8-31-11 D.M.SHECHNER,D.P.BARTEL LIGASE RIBOZYME, CATALYTIC RNA, RIBOZYME, RNA BINDING PROTEIN-RNA COMPLEX 3.12 synthetic,synthetic 3I2Q CRYSTAL STRUCTURE OF THE HAIRPIN RIBOZYME WITH 2'OME SUBSTRATE STRAND AND N1-DEAZAADENOSINE AT POSITION A9 X-RAY DIFFRACTION 11-03-09 J.E.WEDEKIND,R.C.SPITALE,J.KRUCINSKA HAIRPIN RIBOZYME, N1-DEAZAADENOSINE, RNA 2.90 synthetic,synthetic 421D '-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'- R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3' X-RAY DIFFRACTION 1-05-99 Y.XIONG,M.SUNDARALINGAM DNA:RNA HYBRID DUPLEX, DNA-RNA COMPLEX, DNA-RNA HYBRID 1.80 synthetic 1L1C STRUCTURE OF THE LICT BACTERIAL ANTITERMINATOR PROTEIN IN COMPLEX WITH ITS RNA TARGET SOLUTION NMR 3-27-02 Y.YANG,N.DECLERCK,X.MANIVAL,S.AYMERICH,M.KOCHOYAN PROTEIN RNA COMPLEX, ANTITERMINATOR COMPLEX, RNA HAIRPIN, TRANSCRIPTION/RNA COMPLEX BACILLUS SUBTILIS 3DG2 COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF A PRETRANSLOCATION COMPLEX ELECTRON MICROSCOPY 2-03-09 H.GAO,J.LEBARRON,J.FRANK RIBOSOME, PRETRANSLOCATION, RATCHET MOTION 10.00 ESCHERICHIA COLI,ESCHERICHIA COLI 4JXZ STRUCTURE OF E. COLI GLUTAMINYL-TRNA SYNTHETASE BOUND TO ATP AND A TRNA(GLN) ACCEPTOR CONTAINING A UUG ANTICODON X-RAY DIFFRACTION 5-01-13 PERONA,J.J,A.RODRIGUEZ-HERNANDEZ ROSSMANN FOLD, PROTEIN-RNA COMPLEX, TRNA AMINOACYLATION, PROTEIN TRANSLATION, TRNA(GLN), LIGASE-RNA COMPLEX 2.40 synthetic 4BW0 THE MOLECULAR RECOGNITION OF KINK TURN STRUCTURE BY THE L7AE CLASS OF PROTEINS X-RAY DIFFRACTION 11-06-13 L.HUANG,D.M.J.LILLEY RNA-RNA BINDING PROTEIN COMPLEX 2.33 ARCHAEOGLOBUS FULGIDUS 3R1E CRYSTAL STRUCTURE OF GC(8BRG)GCGGC DUPLEX X-RAY DIFFRACTION 6-01-11 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI CGG REPEATS, FRAGILE X MENTAL RETARDATION, 8-BROMOGUANOSINE, RNA 0.97 synthetic 2Y14 THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A COGNATE CODON ON THE 70S RIBOSOME. X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, EF-TU, TRNA, GDP, KIRROMYCIN, G24A, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3TUP CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL PHERS COMPLEXED WITH TRNAPHE IN THE ACTIVE OPEN STATE X-RAY DIFFRACTION 11-23-11 M.SAFRO,L.KLIPCAN,N.MOOR,I.FINAROV,N.KESSLER,M.SUKHANOVA CLASS II AARS, RRM FOLD, AMINOACYLATION, MITOCHONDRIA, LIGASE-RNA COMPLEX 3.05 THERMUS THERMOPHILUS 1D0U SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN SOLUTION NMR 5-24-00 J.S.SMITH,E.P.NIKONOWICZ RNA HAIRPIN, BULGED BASE, STEM-LOOP synthetic 1F84 SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID SOLUTION NMR 11-17-00 P.J.LUKAVSKY,G.A.OTTO,A.M.LANCASTER,P.SARNOW,J.D.PUGLISI RIBONUCLEIC ACID, HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE, SARCIN/RICIN LOOP, LOOP E MOTIF, HAIRPIN LOOP, RNA STRUCTURE synthetic 3R9X CRYSTAL STRUCTURE OF ERA IN COMPLEX WITH MGGDPNP, NUCLEOTIDES 1506- 1542 OF 16S RIBOSOMAL RNA, AND KSGA X-RAY DIFFRACTION 6-22-11 C.TU,X.JI GTPASE, KH DOMAIN, RIBOSOME, BIOGENESIS, GTP, 16S RIBOSOMAL RNA, GTP HYDROLYSIS, HYDROLASE-TRANSFERASE-RNA COMPLEX 2.80 synthetic 2QOV CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, METHYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHORYLATION, RIBOSOME 3.93 ESCHERICHIA COLI,ESCHERICHIA COLI 3O6E CRYSTAL STRUCTURE OF HUMAN HIWI1 PAZ DOMAIN (RESIDUES 277-399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OCH3 AT ITS 3'-END X-RAY DIFFRACTION 1-12-11 Y.TIAN,D.K.SIMANSHU,J.-B.MA,D.J.PATEL PIWI, PAZ, RNA SILENCING, PI-RNA, HIWI1, HILI, PAZ DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX 2.90 synthetic 2ZHB COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDUC X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 3.05 ARCHAEOGLOBUS FULGIDUS 4A3F RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 6NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.50 SACCHAROMYCES CEREVISIAE 2G8W B. HALODURANS RNASE H CATALYTIC DOMAIN E188A MUTANT IN COMPLEX WITH CA2+ AND RNA/DNA HYBRID X-RAY DIFFRACTION 4-25-06 M.NOWOTNY,W.YANG RNASE H, RIBONUCLEASE H, RNA/DNA HYBRID, HYDROLASE/RNA/DNA COMPLEX 2.05 synthetic 2G1W NMR STRUCTURE OF THE AQUIFEX AEOLICUS TMRNA PSEUDOKNOT PK1 SOLUTION NMR 4-11-06 S.NONIN-LECOMTE,F.DARDEL TMRNA, PK1, PSEUDOKNOT, TRANS-TRANSLATION, NMR synthetic 1VQ5 THE STRUCTURE OF THE TRANSITION STATE ANALOGUE "RAA" BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.60 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 1A51 LOOP D/LOOP E ARM OF E. COLI 5S RRNA, NMR, 9 STRUCTURES SOLUTION NMR 5-27-98 A.DALLAS,P.B.MOORE S RRNA, INTERNAL LOOP, CROSS-STRAND STACK, TRANSLATION, RIBOSOME, RIBONUCLEIC ACID ESCHERICHIA COLI 3ZD5 THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME X-RAY DIFFRACTION 12-12-12 M.MARTICK,W.G.SCOTT CATALYTIC RNA, IN-LINE ATTACK, HAMMERHEAD RNA, STEM-LOOP INTERACTION, URIDINE TURN, A-FORM HELIX, RNA 2.20 SYNTHETIC CONSTRUCT 1ZBH '-END SPECIFIC RECOGNITION OF HISTONE MRNA STEM-LOOP BY 3'- EXONUCLEASE X-RAY DIFFRACTION 9-26-06 Y.CHENG,D.J.PATEL HISTONE MRNA 3'-END-SPECIFIC RECOGNITION; STRUCTURES OF 3'- EXONUCLEASE AND ITS RNA COMPLEX, HYDROLASE/RNA COMPLEX 3.00 synthetic 1VTM STRUCTURE OF THE U2 STRAIN OF TOBACCO MOSAIC VIRUS REFINED AT 3.5 ANGSTROMS RESOLUTION USING X-RAY FIBER DIFFRACTION FIBER DIFFRACTION 7-31-94 G.STUBBS,R.PATTANAYEK VIRUS, HELICAL VIRUS, VIRUS/RNA COMPLEX 3.50 synthetic 1VOU CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI 1M8W CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-19 RNA X-RAY DIFFRACTION 9-25-02 X.WANG,J.MCLACHLAN,P.D.ZAMORE,T.M.T.HALL PUMILIO-HOMOLOGY DOMAIN, PUF DOMAIN, NANOS RESPONSE ELEMENT, RNA BINDING PROTEIN/RNA COMPLEX 2.20 synthetic,synthetic,synthetic,synthetic 3J10 STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (30S RIBOSOME OF CLASS 6 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 1RNA CRYSTALLOGRAPHIC STRUCTURE OF AN RNA HELIX: [U(U-A)6A]2 X-RAY DIFFRACTION 4-15-91 A.C.DOCK-BREGEON,B.CHEVRIER,A.PODJARNY,J.JOHNSON,J.S.DE BEAR,G.R.GOUGH,P.T.GILHAM,D.MORAS A-RNA, DOUBLE HELIX 2.25 synthetic 2G8I B. HALODURANS RNASE H CATALYTIC DOMAIN D192N MUTANT IN COMPLEX WITH MN2+ AND RNA/DNA HYBRID (NON-P NICK AT THE ACTIVE SITE) X-RAY DIFFRACTION 4-25-06 M.NOWOTNY,W.YANG RNASE H, RIBONUCLEASE H, RNA/DNA HYBRID, HYDROLASE/RNA/DNA COMPLEX 1.65 synthetic 1X9C AN ALL-RNA HAIRPIN RIBOZYME WITH MUTATION U39C X-RAY DIFFRACTION 11-22-05 S.ALAM,V.GRUM-TOKARS,J.KRUCINSKA,M.L.KUNDRACIK,J.E.WEDEKIND HAIRPIN RIBOZYME, ALL-RNA, COBALT HEXAAMINE, MUTATION, JUNCTIONLESS, LOW SALT, S-TURN, E-LOOP, CATALYTIC RNA, 2'- OME 2.19 synthetic,synthetic,synthetic,synthetic 1O15 THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS SOLUTION NMR 2-18-03 G.M.CLORE,J.KUSZEWSKI RIBONUCLEIC ACID, RNA synthetic 4FAR STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF K+, MG2+ AND 5'-EXON X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, SPLICEOSOME, RNA 2.86 OCEANOBACILLUS IHEYENSIS,OCEANOBACILLUS IHEYENSIS 4DV3 CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT WITH A 16S RRNA MUTATION, C912A, BOUND WITH STREPTOMYCIN X-RAY DIFFRACTION 2-27-13 H.DEMIRCI,F.MURPHY IV,E.MURPHY,S.T.GREGORY,A.E.DAHLBERG,G.JOGL DECODING, STREPTOMYCIN, RNA STRUCTURE, ANTIBIOTIC RESISTANCE, RIBOSOME-ANTIBIOTIC COMPLEX 3.55 THERMUS THERMOPHILUS 2GQ6 CRYSTAL STRUCTURE OF AN RNA RACEMATE X-RAY DIFFRACTION 6-27-06 W.RYPNIEWSKI,M.VALLAZZA,M.PERBANDT,S.KLUSSMANN,C.BETZEL, V.A.ERDMANN DOUBLE HELIX, RACEMATE, RNA 1.30 synthetic,synthetic 3DIO CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE, IRIDIUM HEXAMINE SOAK X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 2.40 synthetic 1Q2S CHEMICAL TRAPPING AND CRYSTAL STRUCTURE OF A CATALYTIC TRNA GUANINE TRANSGLYCOSYLASE COVALENT INTERMEDIATE X-RAY DIFFRACTION 9-09-03 W.XIE,X.LIU,R.H.HUANG TIM BARREL, PROTEIN-RNA COMPLEX, COVALENT INTERMEDIAT, TRANSFERASE/RNA COMPLEX 3.20 synthetic,synthetic 4JI1 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING, RIBOSOME-ANTIBIOTIC COMPLEX 3.14 THERMUS THERMOPHILUS 3OWW CRYSTAL STRUCTURE OF THE GLYCINE RIBOSWITCH BOUND TO GLYCINE X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 2.80 synthetic,synthetic 3J45 STRUCTURE OF A NON-TRANSLOCATING SECY PROTEIN CHANNEL WITH THE 70S RIBOSOME ELECTRON MICROSCOPY 10-23-13 J.F.MENETRET,E.PARK,J.C.GUMBART,S.J.LUDTKE,W.LI,A.WHYNOT, T.A.RAPOPORT,C.W.AKEY S, SECYEG, PROTEIN TRANSLOCATION CHANNEL, RIBOSOME-PROTEIN TRANSPORT COMPLEX 9.50 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3PIO CRYSTAL STRUCTURE OF THE SYNERGISTIC ANTIBIOTIC PAIR LANKAMYCIN AND LANKACIDIN IN COMPLEX WITH THE LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 2-23-11 M.J.BELOUSOFF,T.SHAPIRA,A.BASHAN,E.ZIMMERMAN,K.ARAKAWA,H.KINASHI, ROZENBERG H.,A.YONATH RIBOSOME, LARGE RIBOSOMAL SUBUNIT, 50S, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, LANKAMYCIN, LANKACIDIN, MACROLIDE, RIBOSOME-ANTIBIOTIC COMPLEX 3.25 DEINOCOCCUS RADIODURANS R1,DEINOCOCCUS RADIODURANS R1 1JZY STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA X-RAY DIFFRACTION 10-26-01 F.SCHLUENZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ, R.ALBRECHT,A.YONATH,F.FRANCESCHI RIBOSOME, 50S, 23S, 5S, ANTIBIOTICS, ERYTHROMYCIN, PEPTIDYL TRANSFERASE CENTER 3.50 DEINOCOCCUS RADIODURANS 1M5L STRUCTURE OF WILD-TYPE AND MUTANT INTERNAL LOOPS FROM THE SL-1 DOMAIN OF THE HIV-1 PACKAGING SIGNAL SOLUTION NMR 9-18-02 J.GALLEGO,J.GREATOREX,G.VARANI,A.LEVER BASE TRIPLET, HIV, INTERNAL LOOP, PACKAGING SIGNAL, SL-1, S- TURN synthetic 2MIY SOLUTION NMR STRUCTURE OF A PREQ1 CLASS II RIBOSWITCH FROM STREPTOCOCCUS PNEUMONIAE SOLUTION NMR 1-29-14 M.KANG,C.D.EICHHORN,J.FEIGON PREQ1, RIBOSWITCH, CLASSII, PSEUDOKNOT, STREPTOCOCCUS PNEUMONIAE, RNA synthetic 3ZGZ TERNARY COMPLEX OF E. COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND TOXIC MOIETY FROM AGROCIN 84 (TM84) IN AMINOACYLATION- LIKE CONFORMATION X-RAY DIFFRACTION 1-30-13 S.CHOPRA,A.PALENCIA,C.VIRUS,A.TRIPATHY,B.R.TEMPLE,A.VELAZQUEZ-CAMPOY, S.CUSACK,J.S.READER LIGASE-RNA COMPLEX, LIGASE, NUCLEOTIDE(ATP)-BINDING, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE 2.40 ESCHERICHIA COLI K-12 434D '-R(*UP*AP*GP*CP*UP*CP*C)-3', 5'-R(*GP*GP*GP*GP*CP*UP*A)-3' X-RAY DIFFRACTION 6-14-99 U.MUELLER,H.SCHUEBEL,M.SPRINZL,U.HEINEMANN BASE-PAIR TRNA ALA ACCEPTOR STEM, DOUBLE HELIX 1.16 synthetic,synthetic 2OM3 HIGH-RESOLUTION CRYO-EM STRUCTURE OF TOBACCO MOSAIC VIRUS ELECTRON MICROSCOPY 10-16-07 C.SACHSE PROTEIN-RNA COMPLEX, FOUR-HELICAL UP-AND-DOWN BUNDLE, HELICAL VIRUS 4.40 TOBACCO MOSAIC VIRUS 4K4W POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R5+2_FORM) X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.69 synthetic,synthetic 3J5N VISUALIZATION OF TWO TRNAS TRAPPED IN TRANSIT DURING EF-G-MEDIATED TRANSLOCATION (30S SUBUNIT + LIGANDS) ELECTRON MICROSCOPY 12-11-13 D.J.F.RAMRATH,L.LANCASTER,T.SPRINK,T.MIELKE,J.LOERKE,H.F.NOLLER, C.M.T.SPAHN TRANSLOCATION INTERMEDIATE, EF-G, HEAD SWIVELING, RIBOSOME- TRANSLATION COMPLEX 6.80 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 3CGQ X-RAY STRUCTURE OF A PSEUDOURIDINE-CONTAINING YEAST SPLICEOSOMAL U2 SNRNA-INTRON BRANCH SITE DUPLEX X-RAY DIFFRACTION 7-01-08 Y.LIN,C.L.KIELKOPF RNA DOUBLE HELIX, BRANCHPOINT SEQUENCE, BPS, U2 SNRNA, PSEUDOURIDINE, PRE-MRNA SPLICING 2.55 synthetic,synthetic 4H8K CRYSTAL STRUCTURE OF LC11-RNASE H1 IN COMPLEX WITH RNA/DNA HYBRID X-RAY DIFFRACTION 9-25-13 T.N.NGUYEN,D.J.YOU,H.MATSUMOTO,E.KANAYA,S.KANAYA RNASE H, RIBONUCLEASE H RNA DNA HYBRID, HYDROLASE, RIBONUCLEASE H, HYDROLASE-DNA-RNA COMPLEX 2.30 synthetic 488D CATALYTIC RNA ENZYME-PRODUCT COMPLEX X-RAY DIFFRACTION 3-06-00 J.B.MURRAY,H.SZOKE,A.SZOKE,W.G.SCOTT CATALYTIC RNA, RIBOZYME, ENZYME-PRODUCT COMPLEX, CRYSTAL LATTICE TRAPPING 3.10 synthetic,synthetic,synthetic,synthetic 1SY4 REFINED SOLUTION STRUCTURE OF THE S. CEREVISIAE U6 INTRAMOLECULAR STEM LOOP (ISL) RNA USING RESIDUAL DIPOLAR COUPLINGS (RDCS) SOLUTION NMR 4-06-04 N.J.REITER,L.J.NIKSTAD,A.M.ALLMAN,R.J.JOHNSON,S.E.BUTCHER RNA, STEM-LOOP (GNRA-LIKE TETRALOOP), A-C WOBBLE PAIR, INTERNAL LOOP synthetic 2J0Q THE CRYSTAL STRUCTURE OF THE EXON JUNCTION COMPLEX AT 3.2 A RESOLUTION X-RAY DIFFRACTION 8-30-06 F.BONO,J.EBERT,E.LORENTZEN,E.CONTI MRNA PROCESSING, PHOSPHORYLATION, RRNA PROCESSING, MRNA SPLICING, MRNA TRANSPORT, NUCLEAR PROTEIN, ALTERNATIVE SPLICING, NONSENSE-MEDIATED MRNA DECAY, DEAD-BOX HELICASE, NUCLEOTIDE-BINDING, ATP-BINDING, DNA-BINDING, RNA-BINDING, COILED COIL, EJC, HELICASE, HYDROLASE, TRANSPORT, ACETYLATION 3.20 HOMO SAPIENS 2IZ8 MS2-RNA HAIRPIN (C-7) COMPLEX X-RAY DIFFRACTION 7-27-06 C.HELGSTRAND,E.GRAHN,N.J.STONEHOUSE,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, VIRUS, CAPSID, HAIRPIN, LEVIVIRUS, COMPLEX (CAPSID PROTEIN/RNA HAIRPIN) 3.30 ENTEROBACTERIO PHAGE MS2 2HGQ CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME WITH TRANSLOCATED AND ROTATED SHINE-DALGARNO DUPLEX. THIS ENTRY 2HGQ CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 2HGP. X-RAY DIFFRACTION 11-07-06 L.JENNER,G.YUSUPOVA,B.REES,D.MORAS,M.YUSUPOV RIBOSOME, SHINE-DALGARNO, POST-INITIATION 5.50 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 1HNW STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE X-RAY DIFFRACTION 2-21-01 D.E.BRODERSEN,W.M.CLEMONS JR.,A.P.CARTER,R.MORGAN-WARREN, B.T.WIMBERLY,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, ANTIBIOTIC, TETRACYCLINE 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3J11 STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (50S RIBOSOME OF CLASS 3 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 13.10 ESCHERICHIA COLI,ESCHERICHIA COLI 4L6J CRYSTAL STRUCTURE OF BLASTICIDIN S BOUND TO THERMUS THERMOPHILUS 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT AND BLASTICIDIN S MOLECULE FROM THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 7-31-13 E.SVIDRITSKIY,A.A.KOROSTELEV TRANSLATION TERMINATION, PEPTIDYL TRANSFER, RIBOSOMAL CRYSTAL STRUCTURE, TRANSLATION INHIBITOR, BLASTICIDIN S, RIBOSOME 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4KD9 S RIBOSOME TRANSLOCATION INTERMEDIATE FA-3.6A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT A. THE 30S SUBUNIT A CAN BE FOUND IN 4KD8. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDA (30S) AND 4KDB (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA 3.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3Q0O CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH ERK2 NRE X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.80 synthetic 3OFY CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO CLINDAMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME X-RAY DIFFRACTION 10-20-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, CLINDAMYCIN, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.29 ESCHERICHIA COLI 1S0V STRUCTURAL BASIS FOR SUBSTRATE SELECTION BY T7 RNA POLYMERASE X-RAY DIFFRACTION 2-24-04 D.TEMIAKOV,V.PATLAN,M.ANIKIN,W.T.MCALLISTER,S.YOKOYAMA, D.G.VASSYLYEV,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) T7 RNA POLYMERASE, DNA, RNA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, TRANSFERASE/DNA/RNA COMPLEX, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.20 synthetic 3NKB A 1.9A CRYSTAL STRUCTURE OF THE HDV RIBOZYME PRECLEAVAGE SUGGESTS BOTH LEWIS ACID AND GENERAL ACID MECHANISMS CONTRIBUTE TO PHOSPHODIESTER CLEAVAGE X-RAY DIFFRACTION 9-01-10 J.-H.CHEN,R.YAJIMA,D.M.CHADALAVADA,E.CHASE,P.C.BEVILACQUA,B.L.GOLDEN CATALYTIC RNA, METAL-MEDIATED CATALYSIS, PHOSPHODIESTER CLEAVAGE, DNA, RNA 1.92 HOMO SAPIENS 2PO1 CRYSTAL STRUCTURE OF THE P. ABYSSI EXOSOME RNASE PH RING COMPLEXED WITH A SINGLE STRANDED 10-MER POLY(A) RNA X-RAY DIFFRACTION 3-18-08 M.V.A.S.NAVARRO,B.G.GUIMARAES RNASE PH, HYDROLASE/HYDROLASE/RNA COMPLEX 1.94 synthetic 2F87 SOLUTION STRUCTURE OF A GAAG TETRALOOP IN SRP RNA FROM PYROCOCCUS FURIOSUS SOLUTION NMR 8-08-06 K.OKADA,M.TAKAHASHI,T.SAKAMOTO,K.NAKAMURA,A.KANAI,G KAWAI SRP, GNRR, RNA synthetic 2NPZ CRYSTAL STRUCTURE OF JUNCTIONED HAIRPIN RIBOZYME INCORPORATING SYNTHETIC PROPYL LINKER X-RAY DIFFRACTION 8-14-07 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND RNA, RIBOZYME, HAIRPIN, E LOOP, S TURN, PROPYL 3.35 synthetic,synthetic,synthetic,synthetic 4B3G CRYSTAL STRUCTURE OF IGHMBP2 HELICASE IN COMPLEX WITH RNA X-RAY DIFFRACTION 9-26-12 S.C.LIM,H.SONG HYDROLASE-RNA COMPLEX, HYDROLASE, HELICASE, RNA 2.85 synthetic 1YFV STRUCTURE OF (5'-R(GP*GP*CP*GP*AP*GP*CP*C)-3')2 BY 2-D NMR, 1 STRUCTURE SOLUTION NMR 10-15-97 J.SANTALUCIA JUNIOR,D.H.TURNER RIBONUCLEIC ACID, G:A MISMATCH, 2-D NMR, ANTI-PARALLEL RNA DUPLEX synthetic 3DW4 CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA, U2650-OCH3 MODIFIED X-RAY DIFFRACTION 3-24-09 V.OLIERIC,U.RIEDER,K.LANG,A.SERGANOV,C.SCHULZE-BRIESE,R.MICURA, P.DUMAS,E.ENNIFAR RNA, SARCIN RICIN LOOP 0.97 synthetic 3LOA CRYSTAL STRUCTURE ANALYSIS OF THE RNA CONSTRUCT WITH TWO ADJACENT LIGAND BINDING SITES OF HELIX H44 IN 16S RIBOSOMAL RNA X-RAY DIFFRACTION 8-04-10 S.DIBROV RNA, A-SITE, HYGROMYCIN B BINDING SITE, AMINOGLYCOSIDE 2.30 synthetic,synthetic 1FQZ NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE SOLUTION NMR 1-17-01 R.KLINCK,E.WESTHOF,S.WALKER,M.AFSHAR,A.COLLIER,F.ABOUL-ELA TRANS WOBBLE G.U PAIR, S-TURN, SARCIN-RICIN LOOP, LOOP E MOTIF, SHEARED G.A PAIR, REVERSE HOOGSTEEN A.U PAIR, RNA synthetic 1Y69 RRF DOMAIN I IN COMPLEX WITH THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 3-01-05 D.N.WILSON,F.SCHLUENZEN,J.M.HARMS,T.YOSHIDA,T.OHKUBO, R.ALBRECHT,J.BUERGER,Y.KOBAYASHI,P.FUCINI RIBOSOME, 50S, RRF, RECYCLING FACTOR 3.33 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 1CQL NMR STRUCTURE OF SRP RNA DOMAIN IV SOLUTION NMR 1-14-00 U.SCHMITZ,T.L.JAMES SRP, RNA STRUCTURE, NMR, DOMAIN IV, SIGNAL SEQUENCE RECOGNITION, RIBONUCLEIC ACID ESCHERICHIA COLI 1I9K THE RNA I-MOTIF SOLUTION NMR 5-30-01 K.SNOUSSI,S.NONIN-LECOMTE,J.L.LEROU RNA, I-MOTIF, NMR synthetic 3EPK CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM X-RAY DIFFRACTION 11-04-08 R.H.HUANG,C.ZHOU TRANSFERASE, ALTERNATIVE INITIATION, ATP-BINDING, CYTOPLASM, MITOCHONDRION, NUCLEOTIDE-BINDING, NUCLEUS, TRNA PROCESSING, TRANSFERASE/RNA COMPLEX 3.20 synthetic 1Z30 NMR STRUCTURE OF THE APICAL PART OF STEMLOOP D FROM CLOVERLEAF 1 OF BOVINE ENTEROVIRUS 1 RNA SOLUTION NMR 4-26-05 Y.IHLE,O.OHLENSCHLAGER,E.DUCHARDT,R.RAMACHANDRAN,M.GORLACH CGUUAG RNA TETRALOOP, CUNCGG-TYPE BACKBONE CONFORMATION, A- FORM HELIX synthetic 2BCZ CRYSTAL STRUCTURE OF A MINIMAL, MUTANT ALL-RNA HAIRPIN RIBOZYME (U39C, G8I, 2'DEOXY A-1) X-RAY DIFFRACTION 2-14-06 J.D.SALTER,J.E.WEDEKIND RIBOZYME, G8, INOSINE,, RNA 2.40 synthetic,synthetic,synthetic,synthetic 3F2X CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, CS+ SOAK. X-RAY DIFFRACTION 1-27-09 A.A.SERGANOV,L.HUANG FMN, RIBOSWITCH, TRANSCRIPTION, CESIUM, RNA 3.11 synthetic 2KP3 STRUCTURE OF ANA-RNA HYBRID DUPLEX SOLUTION NMR 2-09-10 C.GONZALEZ,N.MARTN-PINTADO,J.WATTS,I.GOMEZ-PINTO,M.DHAMA,M.OROZCO, J.SCHWARTZENTRUBER,G.PORTELLA ANA, ARABINONUCLEIC ACID, NUCLEIC ACID STRUCTURE, NMR/MD/TI, HYBRID DUPLEX, RNA synthetic,synthetic 3W3S CRYSTAL STRUCTURE OF A. AEOLICUS TRNASEC IN COMPLEX WITH M. KANDLERI SERRS X-RAY DIFFRACTION 2-13-13 Y.ITOH,S.SEKINE,S.YOKOYAMA CLASS 2 AMINOACYL-TRNA SYNTHETASE, TRANSFER RNA, AMINOACYLATION, SELENOCYSTEINE INCORPORATION, SELENIUM METABOLISM, LIGASE-RNA COMPLEX 3.10 AQUIFEX AEOLICUS VF5 1BZ2 STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE SOLUTION NMR 4-27-99 P.C.DURANT,D.R.DAVIS TRNA, PSEUDOURIDINE, ANTICODON synthetic 1HWQ SOLUTION STRUCTURE OF THE VS RIBOZYME SUBSTRATE STEM-LOOP SOLUTION NMR 5-16-01 J.C.FLINDERS,T.DIECKMANN VS RIBOZYME, STEM-LOOP, TANDEM GA, PROTONATED ADENINE, A+C BASE PAIR, RNA synthetic 3DF3 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH HYGROMYCIN B. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH HYGROMYCIN B BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-19-08 M.A.BOROVINSKAYA,S.SHOJI,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI 2TPK AN INVESTIGATION OF THE STRUCTURE OF THE PSEUDOKNOT WITHIN THE GENE 32 MESSENGER RNA OF BACTERIOPHAGE T2 USING HETERONUCLEAR NMR METHODS SOLUTION NMR 11-04-98 J.A.HOLLAND,M.R.HANSEN,Z.DU,D.W.HOFFMAN PSEUDOKNOT, T2, RNA, RIBONUCLEIC ACID synthetic 3CCE STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION U2535A X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL S RRNA MUTATION U2535A, RIBOSOME 2.75 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2AW7 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-08-05 B.S.SCHUWIRTH,M.A.BOROVINSKAYA,C.W.HAU,W.ZHANG,A.VILA- SANJURJO,J.M.HOLTON,J.H.D.CATE RNA-PROTEIN COMPLEX, 30S RIBOSOMAL SUBUNIT, RIBOSOME 3.46 ESCHERICHIA COLI 1UN6 THE CRYSTAL STRUCTURE OF A ZINC FINGER - RNA COMPLEX REVEALS TWO MODES OF MOLECULAR RECOGNITION X-RAY DIFFRACTION 11-20-03 D.LU,M.A.SEARLES,A.KLUG RNA-BINDING PROTEIN/RNA, COMPLEX(ZINC FINGER/RNA), TFIIIA, 5S RIBOSOMAL RNA, ZINC FINGER, RNA-PROTEIN COMPLEX, X. LAEVIS, TRANSCRIPTION REGULATION, RNA-BINDING, DNA- BINDING, NUCLEAR PROTEIN 3.10 XENOPUS LAEVIS 2DLC CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF YEAST TYROSYL- TRNA SYNTHETASE X-RAY DIFFRACTION 6-12-07 M.TSUNODA,Y.KUSAKABE,N.TANAKA,K.T.NAKAMURA TYRRS, TRNA, LIGASE/TRNA COMPLEX 2.40 SACCHAROMYCES CEREVISIAE 1MWL CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE X-RAY DIFFRACTION 2-18-03 Q.VICENS,E.WESTHOF AMINOGLYCOSIDE ANTIBIOTIC, GENETICIN-A-SITE COMPLEX, 16S RIBOSOMAL RNA, BULGED ADENINES, UOU PAIRS 2.40 synthetic 429D CRYSTAL STRUCTURE OF A LEADZYME; METAL BINDING AND IMPLICATIONS FOR CATALYSIS X-RAY DIFFRACTION 3-01-99 J. E.WEDEKIND,D. B.MCKAY LEADZYME, LEAD-DEPENDENT CLEAVAGE, TRNA INTERNAL LOOP, RNA, BULGED NUCLEOTIDES 2.70 synthetic,synthetic 3SIV STRUCTURE OF A HPRP31-15.5K-U4ATAC 5' STEM LOOP COMPLEX, DIMERIC FORM X-RAY DIFFRACTION 8-10-11 S.LIU,H.GHALEI,R.LUHRMANN,M.C.WAHL MAJOR AND MINOR SPLICEOSOME, PRE-MRNA SPLICING, RNA-PROTEIN COMPLEX, U4 SNRNP AND U4ATAC SNRNP, RNA-BINDING PROTEIN, U4 SNRNA, NUCLEUS, SPLICING-RNA COMPLEX 3.30 HOMO SAPIENS 2WH4 INSIGHTS INTO TRANSLATIONAL TERMINATION FROM THE STRUCTURE OF RF2 BOUND TO THE RIBOSOME X-RAY DIFFRACTION 5-19-09 A.WEIXLBAUMER,H.JIN,C.NEUBAUER,R.M.VOORHEES,S.PETRY, A.C.KELLEY,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRNA-BINDING, RRNA-BINDING, METAL-BINDING, TRANSLATION REGULATION, RF2, TRNA, ZINC, MRNA, RIBOSOME, REPRESSOR, RNA-BINDING, METHYLATION, TRANSLATION, TERMINATION 3.45 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2Y0Z THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1WWE NMR STRUCTURE DETERMINED FOR MLV NC COMPLEX WITH RNA SEQUENCE UUUUGCU SOLUTION NMR 3-22-05 A.DEY,D.YORK,A.SMALLS-MANTEY,M.F.SUMMERS HYDROPHOBIC GUANOSINE BINDING POCKET, VIRAL PROTEIN/RNA COMPLEX MOLONEY MURINE LEUKEMIA VIRUS 1KPD A MUTANT RNA PSEUDOKNOT THAT PROMOTES RIBOSOMAL FRAMESHIFTING IN MOUSE MAMMARY TUMOR VIRUS, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 4-01-97 H.KANG,I.TINOCO JUNIOR RIBONUCLEIC ACID, RNA PSEUDOKNOT synthetic 3KTV CRYSTAL STRUCTURE OF THE HUMAN SRP19/S-DOMAIN SRP RNA COMPLEX X-RAY DIFFRACTION 2-16-10 K.WILD,G.BANGE,G.BOZKURT,I.SINNING RIBONUCLEOPROTEIN COMPLEX, RNA-RNA TERTIARY INTERACTIONS, ASYMMETRIC LOOP, RNA-BINDING, SIGNAL RECOGNITION PARTICLE, RNA-RNA BINDING PROTEIN COMPLEX 3.80 HOMO SAPIENS,HOMO SAPIENS 1QD7 PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 8-31-99 W.M.CLEMONS JR.,J.L.C.MAY,B.T.WIMBERLY,J.P.MCCUTCHEON, M.S.CAPEL,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, LOW RESOLUTION MODEL, RIBOSOME 5.50 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3I1S CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE 3.81 ESCHERICHIA COLI,synthetic,synthetic 1C2X S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION ELECTRON MICROSCOPY 4-10-00 R.BRIMACOMBE,F.MUELLER S RRNA, 23S RRNA, RIBOSOME, LARGE RIBOSOMAL SUBUNIT, PROTEIN BIOSYNTHESIS, RIBONUCLEIC ACID, EM-RECONSTRUCTION, ATOMIC STRUCTURE, 3D ARRANGEMENT, FITTING 7.50 ESCHERICHIA COLI 2G8K B. HALODURANS RNASE H CATALYTIC DOMAIN D192N MUTANT IN COMPLEX WITH CA2+ AND RNA/DNA HYBRID (NON-P NICK AT THE ACTIVE SITE) X-RAY DIFFRACTION 4-25-06 M.NOWOTNY,W.YANG RNASE H, RIBONUCLEASE H, RNA/DNA HYBRID, HYDROLASE/RNA/DNA COMPLEX 1.65 synthetic 3J0D MODELS FOR THE T. THERMOPHILUS RIBOSOME RECYCLING FACTOR BOUND TO THE E. COLI POST-TERMINATION COMPLEX ELECTRON MICROSCOPY 4-25-12 T.YOKOYAMA,T.R.SHAIKH,N.IWAKURA,H.KAJI,A.KAJI,R.K.AGRAWAL RIBOSOME, RIBOSOME RECYCLING FACTOR, TRANSLATION 11.10 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2CZJ CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TMRNA FROM THERMUS THERMOPHILUS HB8 X-RAY DIFFRACTION 10-31-06 Y.BESSHO,R.SHIBATA,S.SEKINE,K.MURAYAMA,M.SHIROUZU, S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) SMPB, TMRNA, SSRA RNA, 10SA RNA, TRNA, TRANS-TRANSLATION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN/RNA COMPLEX 3.01 synthetic 1F7H SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURES SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, METAL BINDING SITE, METAL COMPLEX, COBALT (III) HEXAMMINE COMPLEX synthetic 3NJ7 .9 A RESOLUTION X-RAY STRUCTURE OF (GGCAGCAGCC)2 X-RAY DIFFRACTION 8-25-10 A.KILISZEK,R.KIERZEK,W.J.KRZYZOSIAK,W.RYPNIEWSKI CAG REPEATS, POLY-Q DISEASES, RNA 1.90 synthetic 1DUH CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA X-RAY DIFFRACTION 5-08-00 L.JOVINE,T.HAINZL,C.OUBRIDGE,W.G.SCOTT,J.LI,T.K.SIXMA, A.WONACOTT,T.SKARZYNSKI,K.NAGAI .5S RNA, DOMAIN IV, HELIX 8, SIGNAL RECOGNITION PARTICLE, SRP, FFH, SRP54, ELONGATION FACTOR G, EF-G, 23S RNA, NON- CANONICAL BASE PAIRS, MISMATCH 2.70 synthetic 2K95 SOLUTION STRUCTURE OF THE WILD-TYPE P2B-P3 PSEUDOKNOT OF HUMAN TELOMERASE RNA SOLUTION NMR 11-25-08 N.-K.KIM,Q.ZHANG,J.ZHOU,C.A.THEIMER,R.D.PETERSON,J.FEIGON TELOMERASE, RNA, PSEUDOKNOT, TRIPLE HELIX, BULGE, RDC synthetic 2NOK CRYSTAL STRUCTURE OF AN RNA DOMAIN FROM HEPATITIS C VIRUS. X-RAY DIFFRACTION 2-13-07 S.M.DIBROV,H.JOHNSTON-COS,Y.H.WENG MG BINDING SITE, BENT RNA 3.00 synthetic,synthetic 2CD6 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA, C70U MUTANT COBALT(III) HEXAMMINE COMPLEX SOLUTION NMR 5-01-07 M.SCHMITZ C70U MUTANT, COBALT (III HEXAMMINE COMPLEX, METAL BINDING SITE, METAL COMPLEX, P4 STEM, RIBONUCLEASE P, RIBONUCLEIC ACID, RIBOZYME, TRANSFER RNA PROCESSING, NUCLEIC ACID ESCHERICHIA COLI 1ET4 CRYSTAL STRUCTURE OF A VITAMIN B12 BINDING RNA APTAMER WITH LIGAND AT 2.3 A X-RAY DIFFRACTION 11-13-00 D.SUSSMAN,C.WILSON B12 BINDING RNA, VITAMIN B12, COBALAMIN, RNA 2.30 synthetic 3JXR X-RAY STRUCTURE OF R[CGCG(5-FLUORO)CG]2 X-RAY DIFFRACTION 2-09-10 D.A.ADAMIAK,J.MILECKI,R.W.ADAMIAK,W.RYPNIEWSKI RNA, DOUBLE HELIX 1.25 synthetic 2R7T CRYSTAL STRUCTURE OF ROTAVIRUS SA11 VP1/RNA (UGUGAACC) COMPLEX X-RAY DIFFRACTION 7-29-08 X.LU,S.C.HARRISON,Y.J.TAO,J.T.PATTON,M.L.NIBERT VIRAL PROTEIN, RNA-DEPENDENT RNA POLYMERASE, SINGLE SUBUNIT POLYMERASE FOLD, FINGERS, PALM, THUMB, RIGHT HAND CONFIGURATION, RNA-DIRECTED RNA POLYMERASE, TRANSFERASE-RNA COMPLEX 3.00 SIMIAN ROTAVIRUS 4KJ9 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOME, RNA, EF-G, ELONGATION, FACTOR, GTP, GDPCP, VIOMYCIN, TRNA, TRANLOCATION, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT 2.90 ESCHERICHIA COLI,ESCHERICHIA COLI 1I9F STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE SOLUTION NMR 5-25-01 Q.ZHANG,K.HARADA,H.S.CHO,A.FRANKEL,D.E.WEMMER PEPTIDE-RNA COMPLEX, RNA RECOGNITION, SELECTED PEPTIDE, SOLUTION STRUCTURE, DE-NOVO PROTEIN/RNA COMPLEX synthetic 1E8S ALU DOMAIN OF THE MAMMALIAN SRP (POTENTIAL ALU RETROPOSITION INTERMEDIATE) X-RAY DIFFRACTION 11-08-00 O.WEICHENRIEDER,K.WILD,K.STRUB,S.CUSACK ALU RIBONUCLEOPROTEIN PARTICLE, ALU RNP ASSEMBLY AND DIMERISATION, TRANSLATIONAL CONTROL, ALU RETROPOSITION 4.00 HOMO SAPIENS 2R7Y SELENIUM DERIVATIZED RNA/DNA HYBRID IN COMPLEX WITH RNASE H CATALYTIC DOMAIN MUTANT D132N X-RAY DIFFRACTION 5-06-08 J.-S.JIANG,O.GERLITS,Z.HUANG SELENIUM-DNA/RNA, RNASE H, RIBONUCLEASE H RNA/DNA COMPLEX, CYTOPLASM, ENDONUCLEASE, HYDROLASE, MAGNESIUM, MANGANESE, METAL-BINDING, HYDROLASE/RNA/DNA COMPLEX 1.80 BACILLUS HALODURANS 3SUH CRYSTAL STRUCTURE OF THF RIBOSWITCH, BOUND WITH 5-FORMYL-THF X-RAY DIFFRACTION 9-14-11 L.HUANG,A.SERGANOV,D.J.PATEL THREE-WAY JUNCTION, PSEUDOKNOT, GENE REGULATOR, THF, RNA 2.65 EUBACTERIUM SIRAEUM V10SC8A 1YSH LOCALIZATION AND DYNAMIC BEHAVIOR OF RIBOSOMAL PROTEIN L30E ELECTRON MICROSCOPY 7-05-05 M.HALIC,T.BECKER,J.FRANK,C.M.SPAHN,R.BECKMANN STRUCTURAL PROTEIN, RNA, STRUCTURAL PROTEIN/RNA COMPLEX 9.50 synthetic,synthetic,synthetic 1EBQ STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES SOLUTION NMR 7-07-97 R.D.PETERSON,J.FEIGON RIBONUCLEIC ACID, RNA synthetic 2WDK STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A- AND P-SITE TRNAS, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE I. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN METAL-BINDING, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSLATION, COILED COIL, TRNA-BINDING, RRNA-BINDING, TRNA, ZINC, MRNA, RIBOSOME, RNA-BINDING, ZINC-FINGER 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1K6H SOLUTION STRUCTURE OF CONSERVED AGNN TETRALOOPS: INSIGHTS INTO RNT1P RNA PROCESSING SOLUTION NMR 12-19-01 I.LEBARS,B.LAMONTAGNE,S.YOSHIZAWA,S.ABOU ELELA,D.FOURMY RNA TETRALOOP synthetic 3BNO CRYSTAL STRUCTURE OF THE HOMO SAPIENS MITOCHONDRIAL RIBOSOMAL DECODING SITE (BR-DERIVATIVE) X-RAY DIFFRACTION 6-24-08 J.KONDO,E.WESTHOF RIBOSOME, DECODING SITE, RNA 2.35 synthetic 3EGZ CRYSTAL STRUCTURE OF AN IN VITRO EVOLVED TETRACYCLINE APTAMER AND ARTIFICIAL RIBOSWITCH X-RAY DIFFRACTION 10-28-08 H.XIAO,T.E.EDWARDS,A.R.FERRE-D'AMARE TETRACYCLINE, APTAMER, RIBOSWITCH, ANTIBIOTIC, RNA 2.20 synthetic 4G9Z LASSA NUCLEOPROTEIN WITH DSRNA REVEALS NOVEL MECHANISM FOR IMMUNE SUPPRESSION X-RAY DIFFRACTION 4-03-13 X.JIANG,Q.HUANG,W.WANG,H.DONG,H.LY,Y.LIANG,C.DONG,SCOTTISH STRUCTURAL PROTEOMICS FACILITY (SSPF) STRUCTURAL GENOMICS, SCOTTISH STRUCTURAL PROTEOMICS FACILITY, SSPF, 3'-5'-RIBONUCLEASE, NUCLEASE, VIRAL PROTEIN-RNA COMPLEX 2.03 synthetic,synthetic 4KRE STRUCTURE OF HUMAN ARGONAUTE-1 BOUND TO ENDOGENOUS SF9 RNA X-RAY DIFFRACTION 6-19-13 C.R.FAEHNLE,E.ELKAYAM,L.JOSHUA-TOR EUKARYOTIC ARGONAUTE, GENE REGULATION, RNAI, SLICER, TRANSCRIPTION- RNA COMPLEX 1.75 SPODOPTERA FRUGIPERDA 3D5C STRUCTURAL BASIS FOR TRANSLATION TERMINATION ON THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT, RELEASE FACTOR 1 (RF1), TWO TRNA, AND MRNA MOLECULES OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 10-07-08 M.LAURBERG,H.ASAHARA,A.KOROSTELEV,J.ZHU,S.TRAKHANOV, H.F.NOLLER RIBOSOME, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, CYTOPLASM, PROTEIN BIOSYNTHESIS 3.21 THERMUS THERMOPHILUS HB27,ESCHERICHIA COLI,synthetic 1NUJ THE LEADZYME STRUCTURE BOUND TO MG(H20)6(II) AT 1.8 A RESOLUTION X-RAY DIFFRACTION 8-19-03 J.E.WEDEKIND,D.B.MCKAY RIBOZYME, LEADZYME, LEAD-DEPENDENT CLEAVAGE, RNA, MG(H20) 62+, BULGED NUCLEOTIDES, HYDRATED MAGNESIUM, PSEUDOHELICAL PACKING, STICKY ENDS, ALTERNATE CONFORMATION, HOMOPURINE BASE PAIRS 1.80 synthetic,synthetic 4HOT CRYSTAL STRUCTURE OF FULL-LENGTH HUMAN IFIT5 WITH 5`-TRIPHOSPHATE OLIGOADENINE X-RAY DIFFRACTION 1-23-13 Y.M.ABBAS,A.PICHLMAIR,M.W.GORNA,G.SUPERTI-FURGA,B.NAGAR TPR, RNA BINDING, ANTIVIRAL, RNA, RNA BINDING PROTEIN-RNA COMPLEX 2.50 synthetic 2J02 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 3 OF 4) THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, A-, P- AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II. X-RAY DIFFRACTION 9-28-06 M.SELMER,C.M.DUNHAM,F.V.MURPHY,A.WEIXLBAUMER,S.PETRY, J.R.WEIR,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRNA, PAROMOMYCIN, MRNA, TRANSLATION 2.8 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1GTF THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A 53-NUCLEOTIDE RNA MOLECULE CONTAINING GAGUU REPEATS X-RAY DIFFRACTION 4-05-02 N.H.HOPCROFT,A.L.WENDT,P.GOLLNICK,A.A.ANTSON RNA BINDING PROTEIN/RNA, TRANSCRIPTION ATTENUATION, RNA-BINDING PROTEIN, TRP RNA 1.75 synthetic 1EKA NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 SOLUTION NMR 11-13-00 X.CHEN,J.A.MCDOWELL,R.KIERZEK,T.R.KRUGH,D.H.TURNER RNA, GU PAIR, HYDROGEN BONDS, DUBLE HELIX synthetic 1KP7 CONSERVED RNA STRUCTURE WITHIN THE HCV IRES EIF3 BINDING SITE SOLUTION NMR 4-10-02 J.GALLEGO,R.KLINCK,A.J.COLLIER,P.T.COLE,S.J.HARRIS, G.P.HARRISON,F.ABOUL-ELA,S.WALKER,G.VARANI CYTOSINE MISMATCH, EIF3, HCV, INTERNAL LOOP, IRES, S-TURN synthetic 1X1L INTERACTION OF ERA,A GTPASE PROTEIN, WITH THE 3'MINOR DOMAIN OF THE 16S RRNA WITHIN THE THERMUS THERMOPHILUS 30S SUBUNIT. ELECTRON MICROSCOPY 5-17-05 M.R.SHARMA,C.BARAT,R.K.AGRAWAL INTERACTION OF ERA PROTEIN WITH THE 3'MINOR DOMAIN OF 16S RRNA, STRUCTURAL PROTEIN/RNA COMPLEX 13.50 THERMUS THERMOPHILUS 3KIQ STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (PRECLEAVAGE STATE; PART 1 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,K.R.ANDERSEN,C.M.DUNHAM,A.C.KELLEY, J.HENTSCHEL,K.GERDES,V.RAMAKRISHNAN,D.E.BRODERSEN RIBOSOME, RELE, NUCLEASE, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL- BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, STRESS RESPONSE, TOXIN, TRANSLATION, TRANSLATION REGULATION 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic 2KH9 SOLUTION STRUCTURE OF YEAST PRP24-RRM2 BOUND TO A FRAGMENT OF U6 RNA SOLUTION NMR 3-09-10 S.A.MARTIN-TUMASZ,S.E.BUTCHER PROTEIN/RNA, RRM, SNRNP, SPLICING, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RNA-BINDING, SPLICING- RNA COMPLEX synthetic 3OHC STRUCTURE OF THE THERMUS THERMOPHILUS RIBOSOME COMPLEXED WITH ERYTHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, ERYTHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS 3GX5 CRYSTAL STRUCTURE OF T. TENCONGENSIS SAM-I RIBOSWITCH VARIANT A94G/U34 BOUND WITH SAM X-RAY DIFFRACTION 1-12-10 R.K.MONTANGE,R.T.BATEY KINK-TURN, PSEUDOKNOT, FOUR-WAY JUNCTION, RIBOSWITCH, RNA 2.40 synthetic 2BJ6 CRYSTAL STRUCTURE OF A DECAMERIC HNA-RNA HYBRID X-RAY DIFFRACTION 3-09-05 T.MAIER,I.PRZYLAS,N.STRAETER,P.HERDEWIJN,W.SAENGER NUCLEIC ACID (HNA/RNA), DNA, RNA, HNA, HEXITOL NUCLEIC ACID, HYBRID, DUPLEX, MODIFIED NUCLEIC ACID, ANTISENSE, BACKBONE MODIFICATION 2.60 HOMO SAPIENS 3NCU STRUCTURAL AND FUNCTIONAL INSIGHTS INTO PATTERN RECOGNITION BY THE INNATE IMMUNE RECEPTOR RIG-I X-RAY DIFFRACTION 6-30-10 G.SHENG,H.LI INNATE IMMUNE RECEPTOR, RIG-I C-TERMINAL DOMAIN, RNA BINDING PROTEIN- RNA COMPLEX 2.55 synthetic 2QB9 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.54 ESCHERICHIA COLI 3LWP STRUCTURE OF H/ACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 5BRDU X-RAY DIFFRACTION 7-14-10 J.ZHOU,B.LIANG,C.LV,W.YANG,H.LI H/ACA PSEUDOURIDINE SYNTHASE, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE-RNA BINDING PROTEIN-RNA COMPLEX 2.50 synthetic,synthetic 280D THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES X-RAY DIFFRACTION 9-30-96 S.E.LIETZKE,C.L.BARNES,C.E.KUNDROT UNUSUAL RNA, DOUBLE HELIX, INTERNAL LOOP, MISMATCHED 2.40 engineered 2ZZN THE COMPLEX STRUCTURE OF ATRM5 AND TRNACYS X-RAY DIFFRACTION 9-15-09 S.GOTO-ITO,T.ITO,S.YOKOYAMA PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.95 synthetic 3OFO CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO ERYTHROMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 10-13-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ERYTHROMYCIN, KETOLIDE, MACROLIDE, ANTIBIOTIC, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, SMALL, RIBOSOME 3.10 ESCHERICHIA COLI 2M39 THE SOLUTION STRUCTURE OF 3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX SOLUTION NMR 11-27-13 M.PLEVNIK,M.CEVEC,J.PLAVEC DUPLEX, (3',5')-RNA, 2'-O-(2-METHOXYETHYL) RIBOSE, RNA SYNTHETIC 2JYH RIGID-BODY REFINEMENT OF THE TETRALOOP-RECEPTOR RNA COMPLEX SOLUTION NMR 10-07-08 X.ZUO,J.WANG,T.R.FOSTER,C.D.SCHWIETERS,D.M.TIEDE RNA STRUCTURE, RNA/RNA COMPLEX, TETRALOOP-RECEPTOR, GAAA- TETRALOOP, RNA GLOBAL STRUCTURE synthetic 3B4B T. TENGCONGENSIS GLMS RIBOZYME WITH G40A MUTATION, BOUND TO GLUCOSAMINE-6-PHOSPHATE AND A SUBSTRATE RNA WITH A 2'5'- PHOSPHODIESTER LINKAGE X-RAY DIFFRACTION 12-11-07 D.J.KLEIN,A.R.FERRE-D'AMARE RIBOZYME, RIBOSWITCH, GLUCOSAMINE-6-PHOSPHATE, RNA 2.70 THERMOANAEROBACTER TENGCONGENSIS,THERMOANAEROBACTER TENGCONGENSIS 4GAS ALLOSTERIC CONTROL OF THE RIBOSOME BY SMALL-MOLECULE ANTIBIOTICS X-RAY DIFFRACTION 8-29-12 J.H.D.CATE,A.PULK,S.C.BLANCHARD,L.WANG,M.B.FELDMAN,M.R.WASSERMAN, R.ALTMAN NUCLEIC ACID CONFORMATION, PROTEIN BIOSYNTHESIS, ANTIBIOTIC, NEOMYCIN, AMINOGLYCOSIDE, RRF, RECYCLING, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2F4V S RIBOSOME + DESIGNER ANTIBIOTIC X-RAY DIFFRACTION 7-04-06 J.B.MURRAY,S.O.MEROUEH,R.J.RUSSELL,G.LENTZEN,J.HADDAD, S.MOBASHERY S RIBOSOME SUBUNIT, DESIGNER ANTIBIOTIC 3.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2L5D SOLUTION STRUCTURES OF HUMAN PIWI-LIKE 1 PAZ DOMAIN WITH SSRNA (5'- PUGACA) SOLUTION NMR 4-20-11 L.ZENG,Q.ZHANG,K.YAN,M.ZHOU PIWI, PAZ, PIRNA, SSRNA, RNA BINDING PROTEIN-RNA COMPLEX HOMO SAPIENS 4HOS CRYSTAL STRUCTURE OF FULL-LENGTH HUMAN IFIT5 WITH 5`-TRIPHOSPHATE OLIGOURIDINE X-RAY DIFFRACTION 1-23-13 Y.M.ABBAS,A.PICHLMAIR,M.W.GORNA,G.SUPERTI-FURGA,B.NAGAR TPR, RNA BINDING; ANTIVIRAL, RNA, RNA BINDING PROTEIN-RNA COMPLEX 2.00 synthetic 2ZH9 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDU X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.90 ARCHAEOGLOBUS FULGIDUS 3ZEX HIGH_RESOLUTION CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE TRYPANOSOMA BRUCEI RIBOSOME ELECTRON MICROSCOPY 2-13-13 Y.HASHEM,A.DES GEORGES,J.FU,S.N.BUSS,F.JOSSINET,A.JOBE,Q.ZHANG, H.Y.LIAO,R.A.GRASSUCCI,C.BAJAJ,E.WESTHOF,S.MADISON-ANTENUCCI, J.FRANK RIBOSOME, KINETOPLASTIDS, EXPANSION SEGMENTS 5.57 TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI,TRYPANOSOMA BRUCEI 1P5P SOLUTION STRUCTURE OF HCV IRES DOMAIN II (MINIMIZED AVERAGE STRUCTURE) SOLUTION NMR 11-04-03 P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, TRNA, LOOP E MOTIF, HAIRPIN LOOP synthetic 2L8C NMR SPECTROSCOPY AND MOLECULAR DYNAMICS SIMULATION OF R(CCGCUGCGG)2 REVEAL A DYNAMIC UU INTERNAL LOOP FOUND IN MYOTONIC DYSTROPHY TYPE 1 - UU PAIR WITH ZERO HYDROGEN BOND PAIRS SOLUTION NMR 2-23-11 R.PARKESH,M.A.FOUNTAIN,M.D.DISNEY UU MISMATCH, RNA synthetic 3PEY S. CEREVISIAE DBP5 BOUND TO RNA AND ADP BEF3 X-RAY DIFFRACTION 3-23-11 B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER,K.WEIS RECA, DEAD-BOX, ATPASE, HELICASE, MRNA-EXPORT, NUCLEAR PORE, HYDROLASE-RNA COMPLEX 1.40 synthetic 1YFG YEAST INITIATOR TRNA X-RAY DIFFRACTION 9-03-97 R.BASAVAPPA,P.B.SIGLER AMINO ACID TRANSPORT, TRANSFER RIBONUCLEIC ACID, T-RNA 3.00 SACCHAROMYCES CEREVISIAE 2W2H STRUCTURAL BASIS OF TRANSCRIPTION ACTIVATION BY THE CYCLIN T1-TAT-TAR RNA COMPLEX FROM EIAV X-RAY DIFFRACTION 12-09-08 K.ANAND,M.GEYER RNA-BINDING PROTEIN, TAR, TAT, CYCLIN, NUCLEUS, ACTIVATOR, CYCLIN T1, HOST-VIRUS INTERACTION, TRANSCRIPTION REGULATION, CELL CYCLE, RNA-BINDING, ACETYLATION, COILED COIL, TRANSCRIPTION, CELL DIVISION, CRYSTALLIZATION 3.25 EQUINE INFECTIOUS ANEMIA VIRUS 1H1K THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA X-RAY DIFFRACTION 9-26-02 J.M.DIPROSE,J.M.GRIMES,G.C.SUTTON,J.N.BURROUGHS,A.MEYER, S.MAAN,P.P.C.MERTENS,D.I.STUART VIRUS/VIRAL PROTEIN/RNA, VIRUS, VIRAL PROTEIN, RNA 10.00 BLUETONGUE VIRUS,BLUETONGUE VIRUS,BLUETONGUE VIRUS,BLUETONGUE VIRUS,BLUETONGUE VIRUS,BLUETONGUE VIRUS 1JU1 DIMER INITIATION SEQUENCE OF HIV-1LAI GENOMIC RNA: NMR SOLUTION STRUCTURE OF THE EXTENDED DUPLEX SOLUTION NMR 8-23-02 F.GIRARD,F.BARBAULT,G.LANCELOT HIV, DIMER INITIATION SEQUENCE, SL1, RNA, EXTENDED DUPLEX, STABLE DIMER synthetic 3KNJ THE STRUCTURES OF VIOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT FOR MOLECULE II' X-RAY DIFFRACTION 2-23-10 R.E.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, VIOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.15 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1N36 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION X-RAY DIFFRACTION 11-29-02 J.M.OGLE,F.V.MURPHY IV,M.J.TARRY,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, A SITE, DECODING, NEAR- COGNATE,MISMATCH, WOBBLE, GU, G:U, TRANSFER RNA, TRNA, ANTICODON, STEM-LOOP, MESSENGER RNA, MRNA, CODON, ANTIBIOTIC, PAROMOMYCIN 3.65 THERMUS THERMOPHILUS 1K1G STRUCTURAL BASIS FOR RECOGNITION OF THE INTRON BRANCH SITE RNA BY SPLICING FACTOR 1 SOLUTION NMR 11-07-01 Z.LIU,I.LUYTEN,M.J.BOTTOMLEY,A.C.MESSIAS,S.HOUNGNINOU- MOLANGO,R.SPRANGERS,K.ZANIER,A.KRAMER,M.SATTLER SPLICING, BRANCH POINT SEQUENCE, PROTEIN/RNA RECOGNITION, COMPLEX E, KH DOMAIN, QUA2 HOMOLOGY, STAR PROTEINS, GENE REGULATION/RNA COMPLEX HOMO SAPIENS 4ILM CRISPR RNA PROCESSING ENDORIBONUCLEASE X-RAY DIFFRACTION 3-20-13 Y.SHAO,H.LI RRM, ENDORIBONUCLEASE, RNA, HYDROLASE-RNA COMPLEX 3.07 synthetic 2PXE VARIANT 4 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.00 ESCHERICHIA COLI 3OI1 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH AZITHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, AZITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3KIY STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (POSTCLEAVAGE STATE; PART 4 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,V.RAMAKRISHNAN RIBOSOME, TRANSLATIONAL CONTROL, RELBE, TOXIN-ANTITOXIN, ENDONUCLEASE, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC 3.60 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 7MSF MS2 PROTEIN CAPSID/RNA COMPLEX X-RAY DIFFRACTION 11-11-98 S.ROWSELL,N.J.STONEHOUSE,M.A.CONVERY,C.J.ADAMS, A.D.ELLINGTON,I.HIRAO,D.S.PEABODY,P.G.STOCKLEY, S.E.V.PHILLIPS CCAPSID PROTEIN MS2/RNA APTAMER COMPLEX, RNA-PROTEIN COMPLEX, RNA STEM LOOP, BACTERIOPHAGE MS2, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.80 ENTEROBACTERIO PHAGE MS2 2BS0 MS2 (N87AE89K MUTANT) - VARIANT QBETA RNA HAIRPIN COMPLEX X-RAY DIFFRACTION 3-22-06 W.T.HORN,K.TARS,E.GRAHN,C.HELGSTRAND,A.J.BARON,H.LAGO, C.J.ADAMS,D.S.PEABODY,S.E.V.PHILLIPS,N.J.STONEHOUSE, L.LILJAS,P.G.STOCKLEY VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, RNA-BINDING, STRUCTURAL PROTEIN, VIRUS COAT PROTEIN, ICOSAHEDRAL VIRUS 2.45 BACTERIOPHAGE MS2 3UZ3 CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX WITH PAROMOMYCIN. X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 2KTZ INHIBITOR INDUCED STRUCTURAL CHANGE IN THE HCV IRES DOMAIN IIA RNA SOLUTION NMR 4-28-10 R.B.PAULSEN,P.P.SETH,E.E.SWAYZE,R.H.GRIFFEY,J.J.SKALICKY,T.E.CHEATHAM III,D.R.DAVIS HEPATITIS C VIRUS, RNA STRUCTURE, ANTIVIRAL, RNA HEPATITIS C VIRUS 2DB3 STRUCTURAL BASIS FOR RNA UNWINDING BY THE DEAD-BOX PROTEIN DROSOPHILA VASA X-RAY DIFFRACTION 5-02-06 T.SENGOKU,O.NUREKI,A.NAKAMURA,S.KOBAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) DEAD-BOX, HELICASE, PROTEIN-RNA COMPLEX, ATPASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, HYDROLASE/RNA COMPLEX 2.20 synthetic 2JTP SOLUTION STRUCTURE OF THE FRAMESHIFT-INDUCING RNA STEM-LOOP IN SIV SOLUTION NMR 10-02-07 R.J.MARCHESCHI,D.W.STAPLE,S.E.BUTCHER SIV, RNA STEM-LOOP, TRILOOP, FRAMESHIFTING, HIV-2 synthetic 3K49 PUF3 RNA BINDING DOMAIN BOUND TO COX17 RNA 3' UTR RECOGNITION SEQUENCE SITE B X-RAY DIFFRACTION 10-27-09 D.ZHU,C.R.STUMPF,J.M.KRAHN,M.WICKENS,T.M.T.HALL PUF3, PUMILIO, RNA BINDING, MITOCHONDRIAL MRNA,, CYTOPLASM, MEMBRANE, MITOCHONDRION, MITOCHONDRION OUTER MEMBRANE, PHOSPHOPROTEIN, RNA-BINDING, RNA BINDING PROTEIN / RNA COMPLEX 2.50 synthetic 2PCW SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA SOLUTION NMR 5-08-07 H.JIN,J.P.LORIA,P.B.MOORE BOX H/ACA SNORNA, PSEUDOURIDYLATION POCKET, RRNA synthetic,synthetic 2VUQ CRYSTAL STRUCTURE OF A HUMAN TRNAGLY ACCEPTOR STEM MICROHELIX (DERIVED FROM THE GENE SEQUENCE DG9990) AT 1.18 ANGSTROEM RESOLUTION X-RAY DIFFRACTION 3-10-09 A.EICHERT,M.PERBANDT,A.SCHREIBER,J.P.FUERSTE,C.BETZEL, V.A.ERDMANN,C.FOERSTER CLASS II AMINOACYL-TRNA / SYNTHETASE SYSTEM, RNA, TRNA IDENTITY ELEMENTS, GLYCYL-TRNA-SYNTHETASE (GLYRS), ISOACCEPTORS, HUMAN TRNAGLY, AMINOACYL-TRNA-STEM 1.18 HOMO SAPIENS,HOMO SAPIENS 2X9S STRUCTURE OF THE 70S RIBOSOME BOUND TO RELEASE FACTOR 2 AND A SUBSTRATE ANALOG PROVIDES INSIGHTS INTO CATALYSIS OF PEPTIDE RELEASE X-RAY DIFFRACTION 5-12-10 H.JIN,A.C.KELLEY,D.LOAKES,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRNA-BINDING, RRNA-BINDING, METAL-BINDING, RIBOSOME, ZINC-FINGER, TRANSLATION 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4A17 T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 5S RRNA, 5.8S RRNA AND PROTEINS OF MOLECULE 2. X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN EUKARYOTIC RIBOSOME, RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA,TETRAHYMENA THERMOPHILA 2Y9A STRUCTURE OF THE SPLICEOSOMAL U4 SNRNP CORE DOMAIN X-RAY DIFFRACTION 5-11-11 A.K.W.LEUNG,K.NAGAI,J.LI SPLICING-RNA COMPLEX, PRE-MRNA SPLICING, SPLICEOSOME, SNRNP BIOGENESIS, SM SITE, SM FOLD, HETEROMERIC HEPTAMERIC RING, RNA BINDING 3.60 HOMO SAPIENS 1LPW SOLUTION STRUCTURE OF THE YEAST SPLICEOSOMAL U2 SNRNA- INTRON BRANCH SITE HELIX FEATURING A CONSERVED PSEUDOURIDINE SOLUTION NMR 11-27-02 M.I.NEWBY,N.L.GREENBAUM U2 SNRNA, BRANCH SITE, NMR, PSEUDOURIDINE SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 361D CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP X-RAY DIFFRACTION 7-01-98 M.PERBANDT,A.NOLTE,S.LORENZ,V.A.ERDMANN,C.BETZEL RNA, SINGLE STRAND, TETRALOOP, HAIRPIN, MISMATCHED 3.00 synthetic 3PLA CRYSTAL STRUCTURE OF A CATALYTICALLY ACTIVE SUBSTRATE-BOUND BOX C/D RNP FROM SULFOLOBUS SOLFATARICUS X-RAY DIFFRACTION 1-26-11 J.LIN,S.LAI,R.JIA,A.XU,L.ZHANG,J.LU,K.YE RNA-BINDING, METHYLTRANSFERASE, SAM, BOX C/D RNA, GUIDE RNA, RNA- PROTEIN COMPLEX, TRANSFERASE-RNA COMPLEX 3.15 synthetic,synthetic 2EEU GUANINE RIBOSWITCH U22A, A52U MUTANT BOUND TO HYPOXANTHINE X-RAY DIFFRACTION 11-13-07 S.D.GILBERT,C.E.LOVE,R.T.BATEY MRNA, RIBOSWITCH, GUANINE, HYPOXANTHINE, RNA-LIGAND COMPLEX, THREE-WAY JUNCTION, DOUBLE HELIX 1.95 synthetic 1UUU STRUCTURE OF AN RNA HAIRPIN LOOP WITH A 5'-CGUUUCG-3' LOOP MOTIF BY HETERONUCLEAR NMR SPECTROSCOPY AND DISTANCE GEOMETRY, 15 STRUCTURES SOLUTION NMR 2-25-98 C.SICH,O.OHLENSCHLAGER,R.RAMACHANDRAN,M.GORLACH,L.R.BROWN RIBONUCLEIC ACID, RNA, PENTALOOP, HAIRPIN, NMR, 18S RIBOSOMAL RNA synthetic 333D THE CRYSTAL STRUCTURE OF AN RNA OLIGOMER INCORPORATING TANDEM ADENOSINE-INOSINE MISMATCHES X-RAY DIFFRACTION 10-16-97 R.J.CARTER,K.J.BAEYENS,J.SANTALUCIA JR.,D.H.TURNER, S.R.HOLBROOK A-RNA, DOUBLE HELIX, INTERNAL LOOP, MISMATCHED 2.52 synthetic 2WRL THE STRUCTURE OF THE RIBOSOME WITH ELONGATION FACTOR G TRAPPED IN THE POST-TRANSLOCATIONAL STATE. (PART 4 OF 4). X-RAY DIFFRACTION 10-20-09 Y.-G.GAO,M.SELMER,C.M.DUNHAM,A.WEIXLBAUMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOME, ELONGATION FACTOR G, TRANSLOCATION, TRANSLATION, PROTEIN SYNTHESIS 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4ADV STRUCTURE OF THE E. COLI METHYLTRANSFERASE KSGA BOUND TO THE E. COLI 30S RIBOSOMAL SUBUNIT ELECTRON MICROSCOPY 2-15-12 D.BOEHRINGER,H.C.O'FARRELL,J.P.RIFE,N.BAN TRANSLATION, RIBOSOME BIOGENESIS, SMALL RIBOSOMAL SUBUNIT 13.50 synthetic 2CV0 GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU) AND L-GLUTAMATE X-RAY DIFFRACTION 9-05-06 S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) LIGASE, RNA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE/RNA COMPLEX 2.40 synthetic 1H0Q NMR SOLUTION STRUCTURE OF A FULLY MODIFIED LOCKED NUCLEIC ACID (LNA) HYBRIDIZED TO RNA SOLUTION NMR 7-17-03 J.RASMUSSEN,M.PETERSEN,K.E.NIELSEN,R.KUMAR,J.WENGEL, J.P.JACOBSEN DNA-RNA HYBRID, LNA, RNA, LOCKED NUCLEIC ACID, HYBRID, DNA/RNA HYBRID synthetic,synthetic 2PWT CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING SITE COMPLEXED WITH AMINOGLYCOSIDE CONTAINING THE L-HABA GROUP X-RAY DIFFRACTION 9-18-07 J.KONDO,K.PACHAMUTHU,B.FRANCOIS,J.SZYCHOWSKI,S.HANESSIAN, E.WESTHOF AMINOGLYCOSIDE; HABA GROUP; RIBOSOMAL DECODING SITE; X-RAY ANALYSIS; RNA 1.80 synthetic 4FY4 THE CRYSTALLOGRAPHIC STRUCTURE OF PANICUM MOSAIC VIRUS X-RAY DIFFRACTION 11-21-12 D.L.MAKINO,S.B.LARSON,A.MCPHERSON ICOSAHEDRAL VIRUS, TOMBUSVIRIDAE, RNA HAIRPIN, VIRUS COAT PROTEIN, SWISS JELLY ROLL FOLD, VIRUS-RNA COMPLEX 2.90 PANICUM MOSAIC VIRUS 3OX0 CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, UNBOUND STATE X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 3.05 synthetic,synthetic 3TRA RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS X-RAY DIFFRACTION 11-06-87 E.WESTHOF,P.DUMAS,D.MORAS T-RNA, SINGLE STRAND, LOOPS 3.00 SACCHAROMYCES CEREVISIAE 3OVS HOW THE CCA-ADDING ENZYME SELECTS ADENINE OVER CYTOSINE IN POSITION 76 OF TRNA X-RAY DIFFRACTION 12-01-10 B.C.PAN,Y.XIONG,T.A.STEITZ PROTEIN-RNA, ROSSMANN FOLD, CCA-ADDING, TRNA, NUCLEOTIDYLTRANSFER, TRANSFERASE-RNA COMPLEX 2.80 synthetic 2ZKQ STRUCTURE OF A MAMMALIAN RIBOSOMAL 40S SUBUNIT WITHIN AN 80S COMPLEX OBTAINED BY DOCKING HOMOLOGY MODELS OF THE RNA AND PROTEINS INTO AN 8.7 A CRYO-EM MAP ELECTRON MICROSCOPY 5-06-08 P.CHANDRAMOULI,C.W.AKEY PROTEIN-RNA COMPLEX, 40S RIBOSOMAL SUBUNIT, RIBOSOMAL PROTEIN/RNA COMPLEX 8.70 CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS,CANIS FAMILIARIS 3GPQ CRYSTAL STRUCTURE OF MACRO DOMAIN OF CHIKUNGUNYA VIRUS IN COMPLEX WITH RNA X-RAY DIFFRACTION 7-21-09 H.MALET,S.JAMAL,B.COUTARD,B.CANARD MACRO DOMAIN, X DOMAIN, CHIKUNGUNYA, ALPHAVIRUS, VIRUS, VIZIER. VIRAL ENZYMES INVOLVED IN REPLICATION, RNA, ATP- BINDING, CELL MEMBRANE, CYTOPLASM, ENDOSOME, HELICASE, HYDROLASE, LIPOPROTEIN, LYSOSOME, MEMBRANE, METHYLTRANSFERASE, MRNA CAPPING, MRNA PROCESSING, MULTIFUNCTIONAL ENZYME, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PALMITATE, PHOSPHOPROTEIN, PROTEASE, RNA REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, THIOL PROTEASE, TRANSFERASE, UBL CONJUGATION, VIRAL PROTEIN/RNA 2.00 synthetic 3M4O RNA POLYMERASE II ELONGATION COMPLEX B X-RAY DIFFRACTION 5-12-10 D.WANG,G.ZHU,X.HUANG,S.J.LIPPARD TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, DNA DAMAGE, CANCER, PLATINUM DRUG, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, METAL-BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA REPAIR, TRANSFERASE-DNA-RNA HYBRID COMPLEX 3.57 synthetic 4H5P CRYSTAL STRUCTURE OF RIFT VALLEY FEVER VIRUS NUCLEOCAPSID PROTEIN TETRAMER BOUND TO SINGLE-STRANDED RNA X-RAY DIFFRACTION 11-07-12 D.D.RAYMOND,J.L.SMITH NUCLEOCAPSID PROTEIN, N PROTEIN, RIBONUCLEOPROTEIN, VIRAL NUCLEOPROTEIN, RNA BINDING, VIRUS, RNP, VIRAL PROTEIN-RNA COMPLEX 2.15 synthetic 1F1T CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE X-RAY DIFFRACTION 9-04-00 C.BAUGH,D.GRATE,C.WILSON U-TURN, BASE QUADRUPLE, BASE TRIPLE, GNRA TETRALOOP, 5- BROMO-URIDINE, RNA 2.80 synthetic 1ELH NMR ANALYSIS OF HELIX I FROM THE 5S RNA OF ESCHERICHIA COLI SOLUTION NMR 1-31-94 S.WHITE,P.MOORE RNA, NMR, 5S RIBOSOMAL RNA ESCHERICHIA COLI,ESCHERICHIA COLI 2Y9H STRUCTURE A OF CRISPR ENDORIBONUCLEASE CSE3 BOUND TO 19 NT RNA X-RAY DIFFRACTION 5-18-11 D.G.SASHITAL,M.JINEK,J.A.DOUDNA HYDROLASE-RNA COMPLEX, FERREDOXIN-LIKE 2.50 synthetic 3OXE CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH, MN2+ SOAKED X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 2.90 synthetic,synthetic 3ZC0 STRUCTURE OF AFC3PO - DUPLEX RNA COMPLEX X-RAY DIFFRACTION 1-23-13 E.A.PARIZOTTO,E.D.LOWE,J.S.PARKER HYDROLASE-RNA COMPLEX, TRANSLIN, TRAX, RNA INTERFERENCE, RNAI, RNA SILENCING, SIRNA, PASSENGER STRAND, RISC 2.98 SYNTHETIC CONSTRUCT 1XBP INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH TIAMULIN X-RAY DIFFRACTION 3-01-05 F.SCHLUENZEN,E.PYETAN,P.FUCINI,A.YONATH,J.M.HARMS TIAMULIN, PLEUROMUTILIN, 50S RIBOSOME 3.50 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 1T2R STRUCTURAL BASIS FOR 3' END RECOGNITION OF NUCLEIC ACIDS BY THE DROSOPHILA ARGONAUTE 2 PAZ DOMAIN SOLUTION NMR 6-01-04 A.LINGEL,B.SIMON,E.IZAURRALDE,M.SATTLER NUCLEIC ACID BINDING PROTEIN, RNA, NUCLEIC ACID BINDING PROTEIN/RNA COMPLEX DROSOPHILA MELANOGASTER 3MDG CRYSTAL STRUCTURE OF THE 25KDA SUBUNIT OF HUMAN CLEAVAGE FACTOR IM IN COMPLEX WITH RNA UUGUAU X-RAY DIFFRACTION 6-02-10 Q.YANG,G.M.GILMARTIN,S.DOUBLIE CPSF5, CF IM, MRNA PROCESSING, CLEAVAGE FACTOR, NUDIX PROTEIN, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN, RNA BINDING-RNA COMPLEX 2.22 synthetic 4BOC STRUCTURE OF MITOCHONDRIAL RNA POLYMERASE ELONGATION COMPLEX X-RAY DIFFRACTION 9-25-13 K.SCHWINGHAMMER,A.CHEUNG,Y.MOROZOV,K.AGARONYAN,D.TEMIAKOV,P.CRAMER TRANSCRIPTION, RNA POLYMERASE, MITOCHONDRIA, TRANSFERASE, DNA-RNA HYBRID 2.65 SYNTHETIC CONSTRUCT 3G8T CRYSTAL STRUCTURE OF THE G33A MUTANT BACILLUS ANTHRACIS GLMS RIBOZYME BOUND TO GLCN6P X-RAY DIFFRACTION 11-03-09 S.A.STROBEL,J.C.COCHRANE,S.V.LIPCHOCK,K.D.SMITH CATALYTIC RNA, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, RNA BINDING PROTEIN/RNA COMPLEX 3.00 synthetic,synthetic 3G96 CRYSTAL STRUCTURE OF THE BACILLUS ANTHRACIS GLMS RIBOZYME BOUND TO MAN6P X-RAY DIFFRACTION 11-03-09 S.A.STROBEL,J.C.COCHRANE,S.V.LIPCHOCK,K.D.SMITH CATALYTIC RNA, RNA BINDING PROTEIN/RNA COMPLEX 3.01 synthetic,synthetic 4A4T UNAC TETRALOOPS: TO WHAT EXTENT CAN THEY MIMIC GNRA TETRALOOPS SOLUTION NMR 5-30-12 Q.ZHAO,H.HUANG,U.NAGASWAMY,Y.XIA,X.GAO,G.FOX RNA, EVOLUTION, UMAC TETRALOOP HALOARCULA MARISMORTUI 3J3C STRUCTURE OF THE D. MELANOGASTER 40S RRNA AND E-TRNA ELECTRON MICROSCOPY 5-01-13 A.M.ANGER,J.-P.ARMACHE,O.BERNINGHAUSEN,M.HABECK,M.SUBKLEWE, D.N.WILSON,R.BECKMANN EUKARYA, EUKARYOTIC, RIBOSOMAL, 80S, RNA, PROTEIN SYNTHESIS, MASS SPECTROMETRY, RIBOSOME 6.00 DROSOPHILA MELANOGASTER,DROSOPHILA MELANOGASTER 1FXL CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE C-FOS RNA X-RAY DIFFRACTION 2-05-01 X.WANG,T.M.T.HALL PROTEIN-RNA COMPLEX, HUD, AU-RICH ELEMENT, TRANSCRIPTION/RNA COMPLEX 1.80 synthetic 4MEH IN VITRO EVOLVED GLMS RIBOZYME TRIPLE MUTANT, CALCIUM ION COMPLEX X-RAY DIFFRACTION 10-16-13 M.W.L.LAU,A.R.FERRE-D'AMARE GLMS RIBOZYME FOLD, SELF-CLEAVAGE, TRANSESTERIFICATION, METALLORIBOZYME, RNA 3.12 synthetic,synthetic 2C4Q MS2-RNA HAIRPIN (2ONE -5) COMPLEX VIRUS X-RAY DIFFRACTION 11-07-05 E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, VIRUS COAT PROTEIN, ICOSAHEDRAL VIRUS 2.38 ENTEROBACTERIO PHAGE MS2 2LA9 NMR STRUCTURE OF PSEUDOURIDINE_ASL_TYR SOLUTION NMR 8-03-11 A.P.DENMON,J.WANG,E.P.NIKONOWICZ TYROSYL-TRNA, RNA synthetic 4M30 CRYSTAL STRUCTURE OF RNASE III COMPLEXED WITH DOUBLE-STRANDED RNA AND AMP (TYPE II CLEAVAGE) X-RAY DIFFRACTION 12-11-13 J.GAN,Y.-H.LIANG,G.X.SHAW,J.E.TROPEA,D.S.WAUGH,X.JI RNASE III, HYDROLASE, DSRNA, RNA BINDING, RNA PROCESSING, HYDROLASE- RNA COMPLEX 2.50 synthetic 2Y0U THE CRYSTAL STRUCTURE OF EF-TU AND A9C-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 4JAB U/G WOBBLE BASE PAIR IN A RNA DUPLEX X-RAY DIFFRACTION 1-29-14 S.JIANG,H.SUN,J.GAN,Z.HUANG U/G WOBBLE PAIR, RNA 2.23 synthetic 2AWE BASE-TETRAD SWAPPING RESULTS IN DIMERIZATION OF RNA QUADRUPLEXES: IMPLICATIONS FOR FORMATION OF I-MOTIF RNA OCTAPLEX X-RAY DIFFRACTION 2-07-06 B.PAN,K.SHI,M.SUNDARALINGAM RNA, TETRAPLEX, OCTAPLEX 2.10 engineered 1SER THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER X-RAY DIFFRACTION 4-30-94 S.BIOU,V.CUSACK,A.YAREMCHUK,M.TUKALO PROTEIN-T-RNA COMPLEX, LIGASE/RNA COMPLEX 2.90 THERMUS THERMOPHILUS 2GJE STRUCTURE OF A GUIDERNA-BINDING PROTEIN COMPLEX BOUND TO A GRNA X-RAY DIFFRACTION 9-05-06 M.A.SCHUMACHER,E.KARAMOOZ,A.ZIKOVA,L.TRANTIREK,J.LUKES GUIDE RNA; KRNA EDITING; RNA BINDING PROTEIN, TRANSLATION/RNA COMPLEX 3.37 synthetic,synthetic 3CC2 THE REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION WITH RRNA SEQUENCE FOR THE 23S RRNA AND GENOME-DERIVED SEQUENCES FOR R-PROTEINS X-RAY DIFFRACTION 5-20-08 G.GUREL,G.BLAHA GENOMIC SEQUNECE FOR R-PROTEINS, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, ACETYLATION, RIBOSOME 2.40 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2FCX HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEAMINE X-RAY DIFFRACTION 5-16-06 E.ENNIFAR,J.C.PAILLART,R.MARQUET,P.DUMAS HIV-1, RNA, AMINOGLYCOSIDE, ANTIBIOTICS 2.00 synthetic 1AL5 A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES SOLUTION NMR 12-17-97 M.R.CONTE,G.L.CONN,T.BROWN,A.N.LANE RNA DUPLEX, RIBONUCLEIC ACID synthetic 1M8X CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-14 RNA X-RAY DIFFRACTION 9-25-02 X.WANG,J.MCLACHLAN,P.D.ZAMORE,T.M.T.HALL PUMILIO-HOMOLOGY DOMAIN, PUF DOMAIN, NANOS RESPONSE ELEMENT, RNA BINDING PROTEIN/RNA COMPLEX 2.20 synthetic,synthetic 2QNH INTERACTIONS AND DYNAMICS OF THE SHINE-DALGARNO HELIX IN THE 70S RIBOSOME. THIS FILE, 2QNH, CONTAINS THE 30S RIBOSOME SUBUNIT, TWO TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1VSP. X-RAY DIFFRACTION 11-13-07 A.KOROSTELEV,S.TRAKHANOV,H.ASAHARA,M.LAURBERG,H.F.NOLLER S RIBOSOME, SHINE-DALGARNO, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING 3.83 THERMUS THERMOPHILUS HB27,THERMUS THERMOPHILUS HB27,THERMUS THERMOPHILUS HB27,THERMUS THERMOPHILUS HB27 3KCR RIBOSOME-SECY COMPLEX. THIS ENTRY 3KCR CONTAINS 50S RIBOSOMAL SUBNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3KC4 ELECTRON MICROSCOPY 3-02-10 J.C.GUMBART,L.G.TRABUCO,E.SCHREINER,E.VILLA,K.SCHULTEN RIBOSOME-SECY COMPLEX, PROTEIN TRANSLOCATION, CELL MEMBRANE, MEMBRANE, PROTEIN TRANSPORT, TRANSLOCATION, TRANSMEMBRANE, TRANSPORT, REPRESSOR, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, TRANSLATION REGULATION, TRNA- BINDING, ACETYLATION, METHYLATION, ANTIBIOTIC RESISTANCE, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, PHOSPHOPROTEIN, RIBOSOME 9.60 ESCHERICHIA COLI,ESCHERICHIA COLI 3J5C E. COLI 70S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN INTERMEDIATE POST- TRANSLOCATION STATE (POST2A, 50S SUBUNIT) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI 2LBL UNMODIFIED GLYCYL-TRNA(UCC) ANTICODON STEM-LOOP FROM BACILLUS SUBTILIS SOLUTION NMR 4-04-12 A.T.CHANG,E.P.NIKONOWICZ ANTICODON STEM-LOOP, RNA synthetic 2XLI CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, MONOCLINIC FORM X-RAY DIFFRACTION 9-22-10 R.E.HAURWITZ,M.JINEK,B.WIEDENHEFT,K.ZHOU,J.A.DOUDNA HYDROLASE-RNA COMPLEX, ENDORIBONUCLEASE, CRISPR 2.33 PSEUDOMONAS AERUGINOSA 2ZH8 COMPLEX STRUCTURE OF AFCCA WITH TRNAMINIDGC X-RAY DIFFRACTION 8-05-08 Y.TOH,K.TOMITA TRANSFERASE/RNA, ATP-BINDING, MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, RNA REPAIR, RNA- BINDING, TRNA PROCESSING 2.65 ARCHAEOGLOBUS FULGIDUS 3LWO STRUCTURE OF H/ACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 5BRU X-RAY DIFFRACTION 7-14-10 J.ZHOU,B.LIANG,C.LV,W.YANG,H.LI H/ACA PSEUDOURIDINE SYNTHASE, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE-RNA BINDING PROTEIN-RNA COMPLEX 2.85 synthetic,synthetic 1F6X SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE SOLUTION NMR 10-09-00 M.SCHMITZ,I.TINOCO JR. RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, METAL BINDING SITE synthetic 2VON CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER AUAAUUU X-RAY DIFFRACTION 5-06-08 O.KOTIK-KOGAN,E.R.VALENTINE,D.SANFELICE,M.R.CONTE,S.CURRY RNA-BINDING PROTEIN, RNA RECOGNITION MOTIF, SYSTEMIC LUPUS ERYTHEMATOSUS, PHOSPHOPROTEIN, RNA MATURATION, RNA BINDING PROTEIN, NUCLEUS, LA MOTIF, RNA-BINDING, POLYMORPHISM 2.1 HOMO SAPIENS 4K50 RHINOVIRUS 16 POLYMERASE ELONGATION COMPLEX (R1_FORM) X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.93 synthetic,synthetic 3DW5 CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23S RRNA, U2656-OCH3 MODIFIED X-RAY DIFFRACTION 3-24-09 V.OLIERIC,U.RIEDER,K.LANG,A.SERGANOV,C.SCHULZE-BRIESE,R.MICURA, P.DUMAS,E.ENNIFAR RNA, SARCIN RICIN LOOP 0.96 synthetic 2ZZM THE COMPLEX STRUCTURE OF ATRM5 AND TRNALEU X-RAY DIFFRACTION 9-15-09 S.GOTO-ITO,T.ITO,S.YOKOYAMA PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.65 synthetic 2AWB CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-08-05 B.S.SCHUWIRTH,M.A.BOROVINSKAYA,C.W.HAU,W.ZHANG,A.VILA- SANJURJO,J.M.HOLTON,J.H.D.CATE RNA-PROTEIN COMPLEX, 50S RIBOSOMAL SUBUNIT, RIBOSOME 3.46 ESCHERICHIA COLI,ESCHERICHIA COLI 3ADC CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 2) X-RAY DIFFRACTION 7-28-10 Y.ITOH,S.CHIBA,S.SEKINE,S.YOKOYAMA PROTEIN-RNA COMPLEX, TRNA, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, TRANSFERASE, TRANSFERASE-RNA COMPLEX 2.90 METHANOPYRUS KANDLERI 1P5M SOLUTION STRUCTURE OF HCV IRES DOMAIN IIA SOLUTION NMR 11-04-03 P.J.LUKAVSKY,I.KIM,G.A.OTTO,J.D.PUGLISI RIBONUCLEIC ACID, HEPATITIS C VIRUS, INTERNAL RIBOSOME ENTRY SITE, TRNA synthetic 3J28 DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 12.90 ESCHERICHIA COLI 4AL7 CRYSTAL STRUCTURE OF THE CSY4-MINIMAL CRRNA COMPLEX X-RAY DIFFRACTION 6-13-12 R.E.HAURWITZ,S.H.STERNBERG,J.A.DOUDNA HYDROLASE-RNA COMPLEX, CRISPR 2.32 PSEUDOMONAS AERUGINOSA 2KE6 SOLUTION STRUCTURE OF K10 TLS RNA SOLUTION NMR 1-26-10 S.L.BULLOCK,I.RINGEL,D.ISH-HOROWICZ RNA TRANSPORT, RNA HAIRPIN, RNA DROSOPHILA MELANOGASTER 2XEA .6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERA ELECTRON MICROSCOPY 6-30-10 D.K.CLARE,E.V.ORLOVA VIRUS, SINGLE PARTICLE PROCESSING 4.60 TOBACCO MOSAIC VIRUS 3SKI CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV THREE-WAY JUNCTION, RIBOSWITCH, DEOXYGUANOSINE, RNA 2.30 synthetic,synthetic 3OAT CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO TELITHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME WITH TELITHROMYCIN BOUND. X-RAY DIFFRACTION 12-15-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, TELITHROMYCIN, RIBOSOME, RIBOSOME-ANTIBIOTIC COMPLEX 3.25 ESCHERICHIA COLI,ESCHERICHIA COLI 3BSB CRYSTAL STRUCTURE OF HUMAN PUMILIO1 IN COMPLEX WITH CYCLINB REVERSE RNA X-RAY DIFFRACTION 4-08-08 Y.K.GUPTA,D.T.NAIR,R.P.WHARTON,A.K.AGGARWAL PROTEIN-RNA COMPLEX, ALTERNATIVE SPLICING, CYTOPLASM, PHOSPHOPROTEIN, RNA-BINDING, TRANSLATION REGULATION, RNA BINDING PROTEIN/RNA COMPLEX 2.80 HOMO SAPIENS 4ENB CRYSTAL STRUCTURE OF FLUORIDE RIBOSWITCH, BOUND TO IRIDIUM X-RAY DIFFRACTION 5-09-12 A.R.REN,K.R.RAJASHANKAR,D.J.PATEL PSEUDOKNOT, RNA 2.30 THERMOTOGA PETROPHILA 3I8F ELONGATION COMPLEX OF THE 70S RIBOSOME WITH THREE TRNAS AND MRNA.THIS ENTRY 3I8F CONTAINS 50S RIBOSOMAL SUBUNIT. THE 30S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I8G. MOLECULE B IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I8G (30S) AND 3I8F (50S). X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3D0X CRYSTAL STRUCTURE OF THE UNBOUND LYSINE RIBOSWITCH X-RAY DIFFRACTION 7-01-08 R.T.BATEY,A.D.GARST,A.HEROUX,R.P.RAMBO RNA, RIBOSWITCH 2.95 synthetic 1NEM SACCHARIDE-RNA RECOGNITION IN THE NEOMYCIN B / RNA APTAMER COMPLEX SOLUTION NMR 8-31-99 L.JIANG,A.MAJUMDAR,W.HU,T.J.JAISHREE,W.XU,D.J.PATEL RNA APTAMER, AMINOGLYCOSIDE, ANTIBIOTIC synthetic 3GTO BACKTRACKED RNA POLYMERASE II COMPLEX WITH 15MER RNA X-RAY DIFFRACTION 6-09-09 D.WANG,D.A.BUSHNELL,X.HUANG,K.D.WESTOVER,M.LEVITT, R.D.KORNBERG TRANSCRIPTION, TRANSFERASE, DNA-RNA HYBRID, BACKTRACK, DNA- DIRECTED RNA POLYMERASE, DNA BINDING, ISOPEPTIDE BOND, MAGNESIUM, METAL BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA DAMAGE, DNA REPAIR, TRANSFERASE/DNA-RNA HYBRID COMPLEX 4.00 synthetic 3SKZ CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO GUANOSINE X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV THREE-WAY JUNCTION, RIBOSWITCH, 2'-DEOXY GUANOSINE, RNA 2.60 synthetic 3I8H ELONGATION COMPLEX OF THE 70S RIBOSOME WITH THREE TRNAS AND MRNA.THIS ENTRY 3I8H CONTAINS 30S RIBOSOMAL SUBNIT. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I8I. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I8F (50S) AND 3I8G (30S). X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA, 16S RIBOSOMAL RNA, RIBOSOMAL RNA, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING 3.10 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 1DRR DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH DNA STRAND, NMR, 10 STRUCTURES SOLUTION NMR 4-22-98 J.I.GYI,A.N.LANE,G.L.CONN,T.BROWN DNA/RNA HYBRID, PURINE/PYRIMIDINE-RICH STRANDS, ANTISENSE, DNA-RNA HYBRID synthetic 3J0O CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FITTED TO A 9A CRYO-EM MAP: CLASSIC PRE STATE 2 ELECTRON MICROSCOPY 11-16-11 T.BUDKEVICH,J.GIESEBRECHT,R.ALTMAN,J.MUNRO,T.MIELKE,K.NIERHAUS, S.BLANCHARD,C.M.SPAHN MAMMALIA, TRANSLATION, ELONGATION CYCLE, TRNA, RIBOSOME 9.00 ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS,ORYCTOLAGUS CUNICULUS 3PF5 CRYSTAL STRUCTURE OF BS-CSPB IN COMPLEX WITH RU6 X-RAY DIFFRACTION 9-21-11 R.SACHS,K.E.A.MAX,U.HEINEMANN BETA BARREL, PROTEIN-RNA COMPLEX, COLD SHOCK RESPONSE, TRANSCRIPTION REGULATION, TRANSLATION REGULATION, OB FOLD, COLD SHOCK DOMAIN, RNA/DNA BINDING, SINGLE-STRANDED RNA AND DNA, CYTOSOL, GENE REGULATION-RNA COMPLEX 1.68 synthetic 1ZC8 COORDINATES OF TMRNA, SMPB, EF-TU AND H44 FITTED INTO CRYO- EM MAP OF THE 70S RIBOSOME AND TMRNA COMPLEX ELECTRON MICROSCOPY 4-19-05 M.VALLE,R.GILLET,S.KAUR,A.HENNE,V.RAMAKRISHNAN,J.FRANK SMPB, TMRNA, EF-TU, H44, 30S, 16S RRNA, CRYO-EM, TRANS- TRANSLATION, 70S, RNA BINDING PROTEIN/RNA COMPLEX 13.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2V48 STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 2. X-RAY DIFFRACTION 7-31-07 A.WEIXLBAUMER,S.PETRY,C.M.DUNHAM,M.SELMER,A.C.KELLEY, V.RAMAKRISHNAN RIBOSOME, RRF, RECYCLING, TRNA, MRNA, TRANSLATION 3.80 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic 4B6B CRYO-EM STRUCTURE OF THE 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH ARX1 AND REI1 ELECTRON MICROSCOPY 10-31-12 B.J.GREBER,D.BOEHRINGER,C.MONTELLESE,N.BAN RIBOSOME, LARGE RIBOSOMAL SUBUNIT, RIBOSOME BIOGENESIS, RIBOSOME MATURATION FACTOR 8.10 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 2DQO CRYSTAL STRUCTURE OF D(CXCTXCTTC):R(GAAGAAGAG) WHERE X IS 5- (N-AMINOHEXYL)CARBAMOYL-2'-O-METHYLURIDINE X-RAY DIFFRACTION 4-17-07 E.C.M.JUAN,J.KONDO,T.ITO,Y.UENO,A.MATSUDA,A.TAKENAKA MODIFIED NUCLEOTIDE, 5-(N-AMINOHEXYL)CARBAMOYL-2'-O- METHYLURIDINE, A-FORM RNA:DNA HYBRID DUPLEX, DNA-RNA HYBRID 2.30 synthetic 1XV0 SOLUTION NMR STRUCTURE OF RNA INTERNAL LOOP WITH THREE CONSECUTIVE SHEARED GA PAIRS IN 5'GGUGGAGGCU/3'PCCGAAGCCG SOLUTION NMR 11-09-04 G.CHEN,B.M.ZNOSKO,S.D.KENNEDY,T.R.KRUGH,D.H.TURNER THERMODYNAMICS AND STRUCTURE, BASE STACKING AND HYDROGEN BONDING, 3-GA MOTIF, RNA synthetic,synthetic 1XMQ CRYSTAL STRUCTURE OF T6A37-ASLLYSUUU AAA-MRNA BOUND TO THE DECODING CENTER X-RAY DIFFRACTION 12-14-04 F.V.MURPHY,V.RAMAKRISHNAN,A.MALKIEWICZ,P.F.AGRIS RIBOSOME, DECODING, MODIFIED TRNA 3.00 THERMUS THERMOPHILUS HB8,synthetic,synthetic 3DHS MAPPING METAL-BINDING SITES IN THE CATALYTIC DOMAIN OF BACTERIAL RNASE P RNA X-RAY DIFFRACTION 1-27-09 N.R.PACE,A.V.KAZANTSEV,A.A.KRIVENKO CATALYTIC RNA, RNA PROCESSING, HYDROLASE, RNA 3.60 synthetic 1KD1 CO-CRYSTAL STRUCTURE OF SPIRAMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 7-19-02 J.L.HANSEN,J.A.IPPOLITO,N.BAN,P.NISSEN,P.B.MOORE,T.A.STEITZ S SUBUNIT, SPIRAMYCIN, ANTIBIOTIC, MACROLIDE, CARBINOLAMINE, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2M4Q NMR STRUCTURE OF E. COLI RIBOSOMELA DECODING SITE WITH APRAMYCIN SOLUTION NMR 3-20-13 J.D.PUGLISI,A.TSAI,R.MARSHALL,E.VIANI RNA, ANTIBIOTIC, DECODING SITE, AMINOGLYCOSIDE, APRAMYCIN, RNA- ANTIBIOTIC COMPLEX SYNTHETIC CONSTRUCT 3UYG CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1Q29 HAMMERHEAD RIBOZYME WITH 5'-5' G-G LINKAGE: CONFORMATIONAL CHANGE EXPERIMENT X-RAY DIFFRACTION 2-24-04 C.M.DUNHAM,J.B.MURRAY,W.G.SCOTT HAMMERHEAD RIBOZYME, RNA 3.00 synthetic,synthetic 3UXT THE STRUCTURE OF THERMORUBIN IN COMPLEX WITH THE 70S RIBOSOME FROM THERMUS THERMOPHILUS. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES.' X-RAY DIFFRACTION 1-25-12 D.BULKLEY,F.A.JOHNSON,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, THERMORUBIN 3.20 THERMUS THERMOPHILUS 1BAU NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 4-27-99 A.MUJEEB,J.L.CLEVER,T.M.BILLECI,T.L.JAMES,T.G.PARSLOW RIBONUCLEIC ACID, HIV-1, DIMERIZATION, ENCAPSIDATION, RNA synthetic 1EIY THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE X-RAY DIFFRACTION 3-06-00 Y.GOLDGUR,L.MOSYAK,L.RESHETNIKOVA,V.ANKILOVA,M.SAFRO AMINOACYL-TRNA SYNTHETASE, TRNA RECOGNITION, LIGASE/RNA COMPLEX 3.30 THERMUS THERMOPHILUS HB8 2LWK SOLUTION STRUCTURE OF SMALL MOLECULE-INFLUENZA RNA COMPLEX SOLUTION NMR 8-29-12 M.-K.LEE,G.VARANI,B.-S.CHOI,M.PELLECCHIA DOUBLE HELIX, RNA synthetic 4FRN CRYSTAL STRUCTURE OF THE COBALAMIN RIBOSWITCH REGULATORY ELEMENT X-RAY DIFFRACTION 10-17-12 F.E.REYES,J.E.JOHNSON,J.T.POLASKI,R.T.BATEY COBALAMIN, RIBOSWITCH, B12, RNA 3.43 MARINE METAGENOME 1K2G STRUCTURAL BASIS FOR THE 3'-TERMINAL GUANOSINE RECOGNITION BY THE GROUP I INTRON SOLUTION NMR 5-08-02 Y.KITAMURA,Y.MUTO,S.WATANABE,I.KIM,T.ITO,Y.NISHIYA, K.SAKAMOTO,T.OHTSUKI,G.KAWAI,K.WATANABE,K.HOSONO,H.TAKAKU, E.KATOH,T.YAMAZAKI,T.INOUE,S.YOKOYAMA BASE TRIPLE RECOGNITION OF A GUANOSINE, UUCG TETRALOOP, GAGA TETRALOOP, RNA synthetic 1LAJ THE STRUCTURE OF TOMATO ASPERMY VIRUS BY X-RAY CRYSTALLOGRAPHY X-RAY DIFFRACTION 11-27-02 R.W.LUCAS,S.B.LARSON,M.A.CANADY,A.MCPHERSON ANTI-PARALLEL BETA SHEETS, JELLY ROLL, T=3 ICOSAHEDRAL VIRUS, PROTEIN-RNA COMPLEX, DISULPHIDE BRIDGE, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 3.40 TOMATO ASPERMY VIRUS 1I94 CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3 X-RAY DIFFRACTION 4-12-01 M.PIOLETTI,F.SCHLUENZEN,J.HARMS,R.ZARIVACH,M.GLUEHMANN, H.AVILA,H.BARTELS,C.JACOBI,T.HARTSCH,A.YONATH,F.FRANCESCHI S RIBOSOME 3.20 THERMUS THERMOPHILUS 2FDT SOLUTION STRUCTURE OF A CONSERVED RNA HAIRPIN OF EEL LINE UNAL2 SOLUTION NMR 12-05-06 Y.NOMURA,S.BABA,S.NAKAZATO,T.SAKAMOTO,M.KAJIKAWA,N.OKADA, G.KAWAI RDC, LINE, RETROTRANSPOSITION, RNA HAIRPIN synthetic 3OXD CRYSTAL STRUCTURE OF GLYCINE RIBOSWITCH WITH TWO MUTATIONS X-RAY DIFFRACTION 12-29-10 L.HUANG,A.SERGANOV,D.J.PATEL GENE EXPRESSION REGULATOR, GLYCINE RIBOSWITCH, RNA 3.00 synthetic,synthetic 3R8S STRUCTURES OF THE BACTERIAL RIBOSOME IN CLASSICAL AND HYBRID STATES OF TRNA BINDING X-RAY DIFFRACTION 6-01-11 J.A.DUNKLE,L.WANG,M.B.FELDMAN,A.PULK,V.B.CHEN,G.J.KAPRAL,J.NOESKE, J.S.RICHARDSON,S.C.BLANCHARD,J.H.D.CATE PROTEIN BIOSYNTHESIS, RNA, TRNA, TRANSFER RNA, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, RIBOSOME RECYCLING FACTOR, RRF, RIBOSOME 3.00 ESCHERICHIA COLI,ESCHERICHIA COLI 4BS2 NMR STRUCTURE OF HUMAN TDP-43 TANDEM RRMS IN COMPLEX WITH UG-RICH RNA SOLUTION NMR 11-13-13 P.J.LUKAVSKY,D.DAUJOTYTE,J.R.TOLLERVEY,J.ULE,C.STUANI,E.BURATTI, F.E.BARALLE,F.F.DAMBERGER,F.H.T.ALLAIN TRANSCRIPTION, HNRNP, CYSTIC FIBROSIS, NEURODEGENERATION, ISOTOPE-LABELLED RNA, HAMMERHEAD RIBOZYME HOMO SAPIENS 3UYF CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 1VOX CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI 1A60 NMR STRUCTURE OF A CLASSICAL PSEUDOKNOT: INTERPLAY OF SINGLE-AND DOUBLE-STRANDED RNA, 24 STRUCTURES SOLUTION NMR 5-27-98 M.H.KOLK,M.VAN DER GRAAF,S.S.WIJMENGA,C.W.A.PLEIJ,H.A.HEUS, C.W.HILBERS RNA, PSEUDOKNOT, TYMV, RIBONUCLEIC ACID TURNIP YELLOW MOSAIC VIRUS 1L3Z CRYSTAL STRUCTURE ANALYSIS OF AN RNA HEPTAMER X-RAY DIFFRACTION 2-25-03 K.SHI,B.PAN,M.SUNDARALINGAM RNA 2.01 synthetic 1ZIF GAAA RNA TETRALOOP, NMR, 10 STRUCTURES SOLUTION NMR 3-12-97 F.M.JUCKER,H.A.HEUS,P.F.YIP,E.MOORS,A.PARDI RIBONUCLEIC ACID, RNA, TETRALOOPS, GNRA, HAIRPIN synthetic 3OL8 POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH CTP-MN X-RAY DIFFRACTION 12-22-10 P.GONG,O.B.PEERSEN RNA-DEPENDENT RNA POLYMERASE, ELONGATION COMPLEX, VIRUS, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.75 synthetic,synthetic,synthetic 2BE0 COMPLEX BETWEEN PAROMOMYCIN DERIVATIVE JS5-39 AND THE 16S- RRNA A-SITE. X-RAY DIFFRACTION 12-20-05 B.FRANCOIS,E.WESTHOF RNA-AMINOGLYCOSIDE INTERACTIONS, A SITE, UOU PAIRS, AA BULGES 2.63 synthetic 1ZDK STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX X-RAY DIFFRACTION 12-07-98 E.GRAHN,N.J.STONEHOUSE,K.VALEGARD,S.VANDENWORM,L.LILJAS COMPLEX (COAT PROTEIN/RNA), COAT PROTEIN, RNA-BINDING, VIRAL PROTEIN CAPSID, RNA FRAGMENT, ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.86 ENTEROBACTERIO PHAGE MS2 3DVZ CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA X-RAY DIFFRACTION 3-24-09 V.OLIERIC,U.RIEDER,K.LANG,A.SERGANOV,C.SCHULZE-BRIESE,R.MICURA, P.DUMAS,E.ENNIFAR RNA, SARCIN RICIN LOOP 1.00 synthetic 3V71 CRYSTAL STRUCTURE OF PUF-6 IN COMPLEX WITH 5BE13 RNA X-RAY DIFFRACTION 1-04-12 C.QIU,A.KERSHNER,Y.WANG,C.H.HOLLEY,D.WILINSKI,S.KELES,J.KIMBLE, M.WICKENS,T.M.T.HALL PUF REPEATS, RNA BINDING PROTEIN-RNA COMPLEX 2.90 CAENORHABDITIS ELEGANS 2KHY SPECIFIER DOMAIN OF B. SUBTILIS TYRS T BOX LEADER RNA SOLUTION NMR 2-16-10 J.WANG,T.M.HENKIN SPECIFIER DOMAIN, BACILLUS, S-TURN, LOOP-E, RNA synthetic 2EC0 RNA-DEPENDENT RNA POLYMERASE OF FOOT-AND-MOUTH DISEASE VIRUS IN COMPLEX WITH A TEMPLATE-PRIMER RNA AND ATP X-RAY DIFFRACTION 6-26-07 C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO, N.VERDAGUER RNA-DEPENDENT RNA POLYMERASE, 3D POLYMERASE, POLYMERASE, FOOT-AND- MOUTH DISEASE VIRUS, TRANSFERASE/RNA COMPLEX 2.75 synthetic,synthetic 4IG8 STRUCTURAL BASIS FOR CYTOSOLIC DOUBLE-STRANDED RNA SURVEILLANCE BY HUMAN OAS1 X-RAY DIFFRACTION 1-16-13 J.DONOVAN,A.KORENNYKH NUCLEOTIDYL TRANSFERASE, INNATE IMMUNE SYSTEM DOUBLE-STRANDED DSRNA SENSOR RNA POLYMERASE, NUCLEOTIDYL TRANSFERASE 2-5A SYNTHETASE, RNASE L ACTIVATOR, DOUBLE-STRANDED RNA, CYTOSOL, TRANSFERASE-RNA COMPLEX 2.70 synthetic,synthetic 3QG9 CRYSTAL STRUCTURE OF FBF-2/GLD-1 FBEA A7U MUTANT COMPLEX X-RAY DIFFRACTION 3-23-11 Y.Y.KOH,Y.WANG,C.QIU,L.OPPERMAN,L.GROSS,T.M.T HALL,M.WICKENS PUF REPEATS, RNA BINDING DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX 2.25 synthetic 2LAC NMR STRUCTURE OF UNMODIFIED_ASL_TYR SOLUTION NMR 8-03-11 A.P.DENMON,J.WANG,E.P.NIKONOWICZ TYROSYL-TRNA, RNA BACILLUS SUBTILIS 4GHA CRYSTAL STRUCTURE OF MARBURG VIRUS VP35 RNA BINDING DOMAIN BOUND TO 12-BP DSRNA X-RAY DIFFRACTION 8-22-12 S.BALE,J.JEAN-PHILIPPE,Z.A.BORNHOLDT,C.K.KIMBERLIN,P.HALFMANN, M.A.ZANDONATTI,J.KUNERT,G.J.A.KROON,Y.KAWAOKA,I.J.MACRAE,I.A.WILSON, E.O.SAPHIRE VIRAL POLYMERASE, INTERFERON INHIBITION, DSRNA, VIRAL PROTEIN,RNA BINDING PROTEIN-RNA COMPLEX 2.50 synthetic 2YIF CRYSTAL STRUCTURE OF A F. NUCLEATUM FMN RIBOSWITCH - FREE STATE X-RAY DIFFRACTION 8-31-11 Q.VICENS,E.MONDRAGON,R.T.BATEY RNA, TRANSLATION 3.30 FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM,FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM 3IZY MAMMALIAN MITOCHONDRIAL TRANSLATION INITIATION FACTOR 2 ELECTRON MICROSCOPY 3-23-11 A.S.YASSIN,E HAQUE,P.P DATTA,K ELMORE,N.K.BANAVALI,L.L.SPREMULLI, R.K.AGRAWAL TRANSLATION INITIATION FACTOR 2, IF2, E COLI, RNA, RIBOSOMAL PROTEIN 10.80 BOS TAURUS 4KBW S RIBOSOME TRANSLOCATION INTERMEDIATE GDPNP-II CONTAINING ELONGATION FACTOR EFG/GDPNP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS 50S RIBOSOMAL SUBUNIT B. THE FULL ASYMMETRIC UNIT ALSO CONTAINS PDB ENTRIES 4KBV (30S SUBUNIT B), 4KBT (30S SUBUNIT A), AND 4KBU (50S SUBUNIT A). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER GDPNP, CHIMERIC HYBRID STATE RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.86 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2RO2 SOLUTION STRUCTURE OF DOMAIN I OF THE NEGATIVE POLARITY CCHMVD HAMMERHEAD RIBOZYME SOLUTION NMR 12-30-08 J.GALLEGO,D.DUFOUR,S.GAGO,M.DE LA PENA,R.FLORES HAMMERHEAD RIBOZYME, VIROID, CCHMVD, HEPTALOOP, RNA synthetic 2KPV NMR MODEL OF THE FIRST LET-7 MIRNA COMPLEMENTARY SITE (LCS1) IN 3'-UTR OF LIN-41 MRNA FROM C. ELEGANS SOLUTION NMR 8-04-10 M.CEVEC,C.THIBAUDEAU,J.PLAVEC STEM-LOOP, ADENINE BULGE, ASYMMETRIC INTERNAL LOOP, RESIDUAL DIPOLAR COUPLINGS, GAAA TETRALOOP, RNA synthetic 2A0P CRYSTAL STRUCTURE OF RNA OLIGOMER CONTAINING 4'-THIORIBOSE X-RAY DIFFRACTION 8-16-05 P.HAEBERLI,I.BERGER,P.S.PALLAN,M.EGLI A-RNA; DOUBLE HELIX; RIBONUCLEIC ACID; 4'-THIO RNA 1.95 synthetic 1JZX STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA X-RAY DIFFRACTION 10-26-01 F.SCHLUENZEN,R.ZARIVACH,J.HARMS,A.BASHAN,A.TOCILJ, R.ALBRECHT,A.YONATH,F.FRANCESCHI RIBOSOME, 50S, 23S, 5S, ANTIBIOTICS, CLINDAMYCIN, PEPTIDYL TRANSFERASE CENTER 3.10 DEINOCOCCUS RADIODURANS 1H38 STRUCTURE OF A T7 RNA POLYMERASE ELONGATION COMPLEX AT 2.9A RESOLUTION X-RAY DIFFRACTION 11-20-02 T.H.TAHIROV,D.TEMYAKOV,M.ANIKIN,V.PATLAN,W.T.MCALLISTER, D.G.VASSYLYEV,S.YOKOYAMA TRANSFERASE, RNA POLYMERASE, T7 RNA POLYMERASE, ELONGATION COMPLEX, PROTEIN/DNA/RNA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS 2.90 BACTERIOPHAGE T7 1IBK STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN X-RAY DIFFRACTION 5-04-01 J.M.OGLE,D.E.BRODERSEN,W.M.CLEMONS JR.,M.J.TARRY,A.P.CARTER, V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, ANTIBIOTIC, PAROMOMYCIN, AMINOGLYCOSIDE, DECODING 3.31 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2M8K A PYRIMIDINE MOTIF TRIPLE HELIX IN THE KLUYVEROMYCES LACTIS TELOMERASE RNA PSEUDOKNOT IS ESSENTIAL FOR FUNCTION IN VIVO SOLUTION NMR 6-19-13 D.D.CASH,O.COHEN,N.KIM,K.SHEFER,Y.BROWN,N.B.ULYANOV,Y.TZFATI,J.FEIGON TELOMERASE, PSEUDOKNOT, RNA TRIPLEX, RNA synthetic 1VQP THE STRUCTURE OF THE TRANSITION STATE ANALOGUE "RAP" BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 11-29-05 T.M.SCHMEING,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, PEPTIDYL TRANSFERASE REACTION 2.25 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic 3SKW CRYSTAL STRUCTURE OF THE 2'- DEOXYGUANOSINE RIBOSWITCH BOUND TO 2'- DEOXYGUANOSINE, CESIUM SOAK X-RAY DIFFRACTION 8-17-11 O.PIKOVSKAYA,A.POLONSKAIA,D.J.PATEL,A.SERGANOV THREE-WAY RNA JUNCTION, RIBOSWITCH, 2'-DEOXY GUANOSINE, RNA 2.95 synthetic 1U63 THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX X-RAY DIFFRACTION 4-12-05 N.NEVSKAYA,S.TISHCHENKO,A.GABDOULKHAKOV,E.NIKONOVA, O.NIKONOV,A.NIKULIN,M.GARBER,S.NIKONOV,W.PIENDL RIBOSOME, RIBOSOMAL PROTEIN, MRNA-PROTEIN COMPLEX, TRANSCRIPTION/RNA COMPLEX 3.40 synthetic 2C4Z MS2-RNA HAIRPIN (2SU -5-6) COMPLEX X-RAY DIFFRACTION 1-05-06 E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, VIRUS COAT PROTEIN, RNA- BINDING, ICOSAHEDRAL VIRUS 2.60 ENTEROBACTERIO PHAGE MS2 3FAR CATION-DEPENDENT SELF-CLEAVAGE ACTIVITY IN THE DUPLEX FORM OF THE SUBTYPE-B HIV-1 RNA DIMERIZATION INITIATION SITE X-RAY DIFFRACTION 11-24-09 E.ENNIFAR,P.DUMAS HIV-1, RNA, METAL IONS, CATALYTIC RNA 2.40 synthetic 2OIU L1 RIBOZYME LIGASE CIRCULAR ADDUCT X-RAY DIFFRACTION 3-13-07 M.P ROBERTSON,W.G.SCOTT LIGASE, RIBOZYME, IN VITRO SELECTION, RNA, ACTIVE SITE 2.60 synthetic 2G8H B. HALODURANS RNASE H CATALYTIC DOMAIN D192N MUTANT IN COMPLEX WITH MG2+ AND RNA/DNA HYBRID (NON-P NICK AT THE ACTIVE SITE) X-RAY DIFFRACTION 4-25-06 M.NOWOTNY,W.YANG RNASE H, RIBONUCLEASE H, RNA/DNA HYBRID, HYDROLASE/RNA/DNA COMPLEX 1.85 synthetic 3J57 S-FMETVAL-TRNAVAL-TRNAFMET COMPLEX IN HYBRID PRE-TRANSLOCATION STATE (PRE5B, 30S SUBUNIT + TRNA + MRNA) ELECTRON MICROSCOPY 11-13-13 C.BLAU,L.V.BOCK,G.F.SCHRODER,I.DAVYDOV,N.FISCHER,H.STARK,M.V.RODNINA, A.C.VAIANA,H.GRUBMULLER CRYO-EM REFINEMENT, TRNA, TRANSLOCATION INTERMEDIATE, RIBOSOME 17.00 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2ADB SOLUTION STRUCTURE OF POLYPYRIMIDINE TRACT BINDING PROTEIN RBD2 COMPLEXED WITH CUCUCU RNA SOLUTION NMR 10-04-05 F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS,A.HENNING, P.WENTER,L.REYMOND,S.PITSCH,D.L.BLACK,F.H.T.ALLAIN RBD, RRM, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX HOMO SAPIENS 3M3Y RNA POLYMERASE II ELONGATION COMPLEX C X-RAY DIFFRACTION 5-12-10 D.WANG,G.ZHU,X.HUANG,S.J.LIPPARD TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, DNA DAMAGE, CANCER, PLATINUM DRUG, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, ISOPEPTIDE BOND, MAGNESIUM, METAL-BINDING, NUCLEOTIDYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, TRANSFERASE, UBL CONJUGATION, ZINC, ZINC-FINGER, POLYMORPHISM, CYTOPLASM, DNA REPAIR, TRANSFERASE-DNA-RNA HYBRID COMPLEX 3.18 synthetic 2QAO CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.21 ESCHERICHIA COLI,ESCHERICHIA COLI 3UXR THE STRUCTURE OF THERMORUBIN IN COMPLEX WITH THE 70S RIBOSOME FROM THERMUS THERMOPHILUS. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 1-25-12 D.BULKLEY,F.A.JOHNSON,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, THERMORUBIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.20 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2H0W POST-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME X-RAY DIFFRACTION 9-26-06 D.J.KLEIN,A.R.FERRE-D'AMARE RNA, RIBOZYME, PSEUDOKNOT, HELIX 2.40 synthetic,synthetic 1ZFT THE CRYSTAL STRUCTURE OF AN ALL-RNA MINIMAL HAIRPIN RIBOZYME WITH MUTANT G8I AT THE CLEAVAGE SITE X-RAY DIFFRACTION 2-14-06 J.E.WEDEKIND HAIRPIN RIBOZYME, ALL-RNA, COBALT HEXAAMINE, MUTATION, INOSINE, U39C, JUNCTIONLESS, LOW SALT, S-TURN, E-LOOP, RIBOSE ZIPPER, CATALYTIC RNA, 2'-OME 2.33 synthetic,synthetic,synthetic,synthetic 1T28 HIGH RESOLUTION STRUCTURE OF A PICORNAVIRAL INTERNAL CIS- ACTING REPLICATION ELEMENT SOLUTION NMR 8-10-04 V.THIVIYANATHAN,Y.YANG,K.KALUARACHCHI,R.REYNBRAND, D.G.GORENSTEIN,S.M.LEMON CRE, PICORNAVIRUS, RHINO VIRUS, STEM LOOP synthetic 3DIG CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-AMINOETHYL)-L-CYSTEINE X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 2.80 synthetic 3GOG GUANINE RIBOSWITCH A21G,U75C MUTANT BOUND TO 6-CHLOROGUANINE X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,R.T.BATEY RIBOSWITCH, MRNA, GUANINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, THREE-WAY JUNCTION, BASE TRIPLE 2.10 synthetic 3S17 RNA POLYMERASE II INITIATION COMPLEX WITH A 9-NT RNA X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA HYBRID COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.20 synthetic 3AF6 THE CRYSTAL STRUCTURE OF AN ARCHAEAL CPSF SUBUNIT, PH1404 FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH RNA-ANALOG X-RAY DIFFRACTION 4-21-10 Y.NISHIDA,H.ISHIKAWA,N.NAKAGAWA,R.MASUI,S.KURAMITSU ARCHAEAL CPSF, BETA-CASP FAMILY, KH DOMAIN, RIBONUCLEASE, METALLO- BETA-LACTAMASE SUPERFAMILY, PYROCOCCUS HORIKOSHII, ARCHAEA, RNA- ANALOG, HYDROLASE-RNA COMPLEX 2.60 synthetic 1QD3 HIV-1 TAR RNA/NEOMYCIN B COMPLEX SOLUTION NMR 7-12-00 C.FABER,H.STICHT,P.ROESCH NMR, HIV-1, AMINOGLYCOSIDE-RNA-COMPLEX, MINOR GROOVE BINDING HUMAN IMMUNODEFICIENCY VIRUS 1 1YSV SOLUTION STRUCTURE OF THE CENTRAL REGION OF THE HUMAN GLUR- B R/G PRE-MRNA SOLUTION NMR 7-19-05 R.STEFL,F.H.ALLAIN STRUCTURE, RNA, NMR, PENTALOOP, RNA EDITING, ADAR2, STEM- LOOP synthetic 1XST SOLUTION STRUCTURE OF E.COLI RNASE P RNA P4 STEM, U69A MUTATION, COMPLEXED WITH COBALT (III) HEXAMMINE. SOLUTION NMR 12-28-04 M.SCHMITZ RIBONUCLEASE P RNA, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, U69A MUTANT, METAL BINDING SITE, METAL COMPLEX, COBALT (III) HEXAMMINE COMPLEX synthetic 1O0B CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE X-RAY DIFFRACTION 4-15-03 T.L.BULLOCK,J.J.PERONA ENGINEERED TRNA, TRNA-PROTEIN COMPLEX, AMINO ACID SPECIFICITY, LIGASE/RNA COMPLEX 2.70 synthetic 4E8K STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF K+, CA2+ AND A NON-HYDROLYZED OLIGONUCLEOTIDE SUBSTRATE X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA 3.03 OCEANOBACILLUS IHEYENSIS,synthetic 3AOH RNA POLYMERASE-GFH1 COMPLEX (CRYSTAL TYPE 1) X-RAY DIFFRACTION 12-08-10 S.TAGAMI,S.SEKINE,T.KUMAREVEL,M.YAMAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION, TRANSFERASE-DNA-RNA COMPLEX 4.10 synthetic 4BYX CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX ELECTRON MICROSCOPY 11-20-13 I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, S.H.W.SCHERES RIBOSOME, SINGLE PARTICLE ANALYSIS 6.60 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 4KZX RABBIT 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1. X-RAY DIFFRACTION 7-24-13 I.B.LOMAKIN,T.A.STEITZ RIBOSOME, TRANSLATION INITIATION, PREINITIATION COMPLEX 7.81 ORYCTOLAGUS CUNICULUS 3V2C CRYSTAL STRUCTURE OF YFIA BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 30S SUBUNIT WITH BOUND YFIA OF THE 1ST RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME ASSOCIATED INHIBITOR A, RAIA, PROTEIN Y, STRESS RESPONSE, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME-INHIBITOR COMPLEX 2.70 THERMUS THERMOPHILUS 2LVY SOLUTION STRUCTURE OF A RNA DUPLEX CONTAINING A 2'-O-PIVALOYLOXYMETHYL MODIFICATION SOLUTION NMR 4-10-13 C.BARAGUEY RNA, MODIFICATION synthetic,synthetic 3UZK CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX WITH PAROMOMYCIN X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 469D CRYSTAL STRUCTURE AND IMPROVED ANTISENSE PROPERTIES OF 2'-O- (2-METHOXYETHYL)-RNA X-RAY DIFFRACTION 5-12-99 M.TEPLOVA,G.MINASOV,V.TERESHKO,G.INAMATI,P.D.COOK,M.EGLI '-O-(2-METHOXYETHYL) RIBOSE, RNA DODECAMER DUPLEX 1.70 synthetic 1RLG MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTION: CO- CRYSTAL STRUCTURE OF THE ARCHAEAL SRNP INTIATION COMPLEX X-RAY DIFFRACTION 6-01-04 T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI PROTEIN-RNA, STRUCTURAL PROTEIN/RNA COMPLEX 2.70 synthetic 3EQT CRYSTAL STRUCTURE OF HUMAN LGP2 C-TERMINAL DOMAIN IN COMPLEX WITH DSRNA X-RAY DIFFRACTION 3-10-09 P.LI,X.LI INNATE IMMUNITY, RIG-I-LIKE HELICASES, VIRAL RNA DETECTION, LGP2/DSRNA COMPLEX, ATP-BINDING, COILED COIL, CYTOPLASM, HELICASE, HYDROLASE, IMMUNE RESPONSE, NUCLEOTIDE-BINDING, POLYMORPHISM, RNA-BINDING, RNA BINDING PROTEIN/RNA COMPLEX 2.00 synthetic 1SM1 COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN X-RAY DIFFRACTION 8-03-04 J.M.HARMS,F.SCHLUENZEN,P.FUCINI,H.BARTELS,A.YONATH QUINUPRISTIN, DALFOPRISTIN, STREPTOGRAMINS, SYNERCID, RIBOSOME, 50S RIBOSOMAL SUBUNIT 3.42 DEINOCOCCUS RADIODURANS,DEINOCOCCUS RADIODURANS 3B0V TRNA-DIHYDROURIDINE SYNTHASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA X-RAY DIFFRACTION 12-14-11 F.YU,Y.TANAKA,K.YAMASHITA,A.NAKAMURA,M.YAO,I.TANAKA TIM BARREL, OXIDOREDUCTASE-RNA COMPLEX 3.51 THERMUS THERMOPHILUS 2Z4M CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH PAROMOMYCIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH PAROMOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.45 ESCHERICHIA COLI 3J14 STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (50S RIBOSOME OF CLASS 6 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 11.50 ESCHERICHIA COLI,ESCHERICHIA COLI 2CD5 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLINGS - COBALT(III) HEXAMMINE COMPLEX STRUCTURE SOLUTION NMR 5-01-07 M.SCHMITZ COBALT (III) HEXAMMINE COMPLEX, METAL BINDING SITE, METAL COMPLEX, P4 STEM, RIBONUCLEASE P, RIBONUCLEIC ACID, RIBOZYME, TRANSFER RNA PROCESSING, NUCLEIC ACID ESCHERICHIA COLI 1M5K CRYSTAL STRUCTURE OF A HAIRPIN RIBOZYME IN THE CATALYTICALLY-ACTIVE CONFORMATION X-RAY DIFFRACTION 8-02-02 P.B.RUPERT,A.R.FERRE-D'AMARE HAIRPIN RIBOZYME, CATALYTIC RNA, U1A RNA BINDING PROTEIN DOCKED CONFORMATION, SUBSTRATE INHIBITOR STRAND, TRANSLATION/RNA COMPLEX 2.40 synthetic,synthetic 1QU2 INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN X-RAY DIFFRACTION 8-31-99 L.F.SILVIAN,J.WANG,T.A.STEITZ PROTEIN-RNA COMPLEX, METAL IONS, EDITING TRNA SYNTHETASE, DOUBLE-SIEVE, LIGASE/RNA COMPLEX 2.20 STAPHYLOCOCCUS AUREUS 3I9B INITIATION COMPLEX OF 70S RIBOSOME WITH TWO TRNAS AND MRNA. THIS ENTRY 3I9B CONTAINS 30S RIBOSOMAL SUBUNIT OF MOLECULE B. THE 50S RIBOSOMAL SUBUNIT CAN BE FOUND IN PDB ENTRY 3I9C. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 3I9D (30S) AND 3I9E (50S) X-RAY DIFFRACTION 4-21-10 L.B.JENNER,G.YUSUPOVA,M.YUSUPOV RIBOSOME, TRNA, MRNA 3.50 THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 4G5K CRYSTAL STRUCTURE OF THE 70S RIBOSOME WITH TETRACYCLINE. THIS ENTRY CONTAINS THE 30S SUBUNIT OF MOLECULE A. X-RAY DIFFRACTION 2-20-13 L.JENNER,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,SYNTHETIC DNA 3WBM CRYSTAL STRUCTURE OF PROTEIN-RNA COMPLEX X-RAY DIFFRACTION 12-11-13 J.DING,D.C.WANG PROTEIN-RNA COMPLEX, DNA/RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.00 synthetic 3BX2 PUF4 RNA BINDING DOMAIN BOUND TO HO ENDONUCLEASE RNA 3' UTR RECOGNITION SEQUENCE X-RAY DIFFRACTION 3-11-08 M.T.MILLER,J.J.HIGGIN,T.M.T.HALL PUF4, PUMILIO, RNA BINDING, HO ENDONUCLEASE, TRANSCRIPTION, RNA BINDING PROTEIN/RNA COMPLEX 2.84 SACCHAROMYCES CEREVISIAE 4F8V CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECOGING SITE IN COMPLEX WITH SISOMICIN (P21212 FORM) X-RAY DIFFRACTION 8-15-12 J.KONDO,M.KOGANEI,T.KASAHARA DECORDING, RIBOSOME, RNA-ANTIBIOTIC COMPLEX 2.80 synthetic 1TFN STRUCTURE REFINEMENT FOR A 24-NUCLEOTIDE RNA HAIRPIN, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 2-12-97 D.J.KERWOOD,P.N.BORER RIBONUCLEIC ACID, HAIRPIN, BACTERIOPHAGE R17, RNA synthetic 2B64 S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF1 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX. THIS FILE CONTAINS THE 30S SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF1 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURE CONTAINS ONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTOR RF1 AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 1-10-06 S.PETRY,D.E.BRODERSEN,F.V.MURPHY IV,C.M.DUNHAM,M.SELMER, M.J.TARRY,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRANSLATION, RELEASE FACTOR 5.90 THERMUS THERMOPHILUS HB8,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 3J2F DISSECTING THE IN VIVO ASSEMBLY OF THE 30S RIBOSOMAL SUBUNIT REVEALS THE ROLE OF RIMM ELECTRON MICROSCOPY 1-16-13 Q.GUO,S.GOTO,Y.CHEN,A.MUTO,H.HIMENO,H.DENG,J.LEI,N.GAO RIBOSOME BIOGENESIS, 30S SUBUNIT ASSEMBLY, RIMM, RIBOSOME 17.60 ESCHERICHIA COLI 3BBM MINIMALLY JUNCTIONED HAIRPIN RIBOZYME INCORPORATES A38C AND 2'O-ME MODIFICATION AT ACTIVE SITE X-RAY DIFFRACTION 8-12-08 C.MACELREVEY,J.KRUCINSKA,J.E.WEDEKIND HAIRPIN RIBOZYME, PHOSPHORYL TRANSFER, 2'O-METHYL, RNA, SMALL RIBOZYME 2.65 synthetic,synthetic,synthetic 2NR0 CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA X-RAY DIFFRACTION 5-15-07 S.HUR,R.M.STROUD PSEUDOURIDINE SYNTHASE, ANTICODON STEM LOOP, TRNA, MULTISITE SPECIFICITY, ISOMERASE/RNA COMPLEX 3.90 synthetic 2E2J RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH GMPCPP X-RAY DIFFRACTION 12-12-06 D.WANG,D.A.BUSHNELL,K.D.WESTOVER,C.D.KAPLAN,R.D.KORNBERG TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR MACHINE, DNA, TRANSCRIPTION/DNA/RNA COMPLEX, TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRID COMPLEX 3.50 synthetic 1NJN THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE ANTIBIOTIC SPARSOMYCIN X-RAY DIFFRACTION 2-11-03 A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS, R.BERISIO,H.BARTELS,H.A.HANSEN,A.YONATH RIBOSOMES, TRNA, PUROMYCIN, SPARSOMYCIN, PEPTIDYL- TRANSFERASE, PEPTIDE BOND FORMATION 3.70 DEINOCOCCUS RADIODURANS 4TRA RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS X-RAY DIFFRACTION 11-06-87 E.WESTHOF,P.DUMAS,D.MORAS T-RNA, SINGLE STRAND, LOOPS 3.00 SACCHAROMYCES CEREVISIAE 3RZD RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.30 synthetic 4BPE THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A - COMPLEX 1 X-RAY DIFFRACTION 7-17-13 M.WEISSER,F.VOIGTS-HOFFMANN,J.RABL,M.LEIBUNDGUT,N.BAN RIBOSOME, TRANSLATION, TRANSLATION INITIATION, SMALL RIBOSOMAL SUBUNIT, 40S, EIF1A, EIF1, TRANSLATION INITIATION FACTOR, EUKARYOTIC TRANSLATION INITIATION 3.70 TETRAHYMENA THERMOPHILA 4ANG SMALL RNA PHAGE PRR1 IN COMPLEX WITH AN RNA OPERATOR FRAGMENT X-RAY DIFFRACTION 2-27-13 M.PERSSON,K.TARS,L.LILJAS VIRUS, CAPSID, CAPSID PROTEINS, IONS, METALS 3.50 PSEUDOMONAS PHAGE PRR1 2NRE CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA X-RAY DIFFRACTION 5-15-07 S.HUR,R.M.STROUD PSEUDOURIDINE SYNTHASE, ANTICODON STEM LOOP, TRNA, MULTISITE SPECIFICITY, ISOMERASE/RNA COMPLEX 4.00 synthetic 1KPY PEMV-1 P1-P2 FRAMESHIFTING PSEUDOKNOT, 15 LOWEST ENERGY STRUCTURES SOLUTION NMR 1-11-02 P.L.NIXON,D.P.GIEDROC PSEUDOKNOT, NMR, FRAMESHIFTING, LUTEOVIRUS, TRIPLE HELIX, PROTONATED CYTIDINE, RIBONUCLEIC ACID, RNA synthetic 1OOA CRYSTAL STRUCTURE OF NF-KB(P50)2 COMPLEXED TO A HIGH- AFFINITY RNA APTAMER X-RAY DIFFRACTION 7-22-03 D.B.HUANG,D.VU,L.A.CASSIDAY,J.M.ZIMMERMAN,L.J.MAHER III, G.GHOSH PROTEIN-RNA COMPLEX, TRANSCRIPTION FACTOR NF-KB, CRYSTAL STRUCTURE, TRANSCRIPTION/RNA COMPLEX 2.45 synthetic 3KIU STRUCTURE OF RELE NUCLEASE BOUND TO THE 70S RIBOSOME (POSTCLEAVAGE STATE; PART 1 OF 4) X-RAY DIFFRACTION 12-15-09 C.NEUBAUER,Y.-G.GAO,K.R.ANDERSEN,C.M.DUNHAM,A.C.KELLEY, J.HENTSCHEL,K.GERDES,V.RAMAKRISHNAN,D.E.BRODERSEN RIBOSOME, TRANSLATIONAL CONTROL, RELBE, TOXIN-ANTITOXIN, ENDONUCLEASE, COILED COIL, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, TRNA-BINDING, REPRESSOR, STRESS RESPONSE, TOXIN, TRANSLATION, TRANSLATION REGULATION 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,synthetic 2AZ0 FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P212121) X-RAY DIFFRACTION 10-11-05 J.A.CHAO,J.H.LEE,B.R.CHAPADOS,E.W.DEBLER,A.SCHNEEMANN, J.R.WILLIAMSON PROTEIN-RNA COMPLEX, FOUR-HELIX BUNDLE, VIRAL PROTEIN/RNA COMPLEX 2.60 synthetic 2C50 MS2-RNA HAIRPIN (A -5) COMPLEX X-RAY DIFFRACTION 1-05-06 E.GRAHN,T.MOSS,C.HELGSTRAND,K.FRIDBORG,M.SUNDARAM,K.TARS, H.LAGO,N.J.STONEHOUSE,D.R.DAVIS,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, CAPSID, COMPLEX (CAPSID PROTEIN-RNA HAIRPIN), HAIRPIN, LEVIVIRUS, VIRUS/VIRAL PROTEIN/RNA, VIRUS COAT PROTEIN, ICOSAHEDRAL VIRUS 2.65 ENTEROBACTERIO PHAGE MS2 3I2U CRYSTAL STRUCTURE OF THE HAIPRIN RIBOZYME WITH A 2',5'- LINKED SUBSTRATE AND N1-DEAZAADENOSINE AT POSITION A10 X-RAY DIFFRACTION 11-03-09 J.E.WEDEKIND,R.C.SPITALE,J.KRUCINSKA HAIRPIN RIBOZYME, N1-DEAZAADENOSINE, RNA 2.80 synthetic,synthetic 1T4L SOLUTION STRUCTURE OF DOUBLE-STRANDED RNA BINDING DOMAIN OF S. CEREVISIAE RNASE III (RNT1P) IN COMPLEX WITH THE 5' TERMINAL RNA HAIRPIN OF SNR47 PRECURSOR SOLUTION NMR 6-01-04 H.WU,A.HENRAS,G.CHANFREAU,J.FEIGON DSRBD, RNASE III, AGNN TETRALOOP, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN/RNA COMPLEX synthetic 1G3A STRUCTURE OF RNA DUPLEXES (CIGCGICG)2 SOLUTION NMR 8-01-01 X.CHEN,R.KIERZEK,D.H.TURNER DOUBLE HELIX, RNA synthetic 1RXB CRYSTAL STRUCTURE OF R(CCCCGGGG) IN TWO DISTINCT LATTICES X-RAY DIFFRACTION 8-26-96 S.PORTMANN,N.USMAN,M.EGLI A-RNA, DOUBLE HELIX 1.80 synthetic 1FFY INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN X-RAY DIFFRACTION 8-07-00 L.F.SILVIAN,J.WANG,T.A.STEITZ STAPHYLOCOCCUS AUREUS, PROTEIN-RNA COMPLEX, METAL IONS, EDITING TRNA SYNTHETASE, DOUBLE-SIEVE, LIGASE/RNA, MUPIROCIN 2.20 synthetic 2PXL VARIANT 9 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 8-07-07 A.Y.KEEL,R.P.RAMBO,R.T.BATEY,J.S.KIEFT GU PAIR, HEXAMINE, RNA PHASING, RNA, CATION BINDING, SIGNALING PROTEIN/RNA COMPLEX 2.50 ESCHERICHIA COLI 2KXN NMR STRUCTURE OF HUMAN TRA2BETA1 RRM IN COMPLEX WITH AAGAAC RNA SOLUTION NMR 3-16-11 A.CLERY,S.JAYNE,N.BENDERSKA,C.DOMINGUEZ,S.STAMM,F.H.-T.ALLAIN SR PROTEIN, RRM, SPLICING FACTOR, RNA PROTEIN COMPLEX, SMN, RNA BINDING PROTEIN-RNA COMPLEX synthetic 3UOS CRYSTAL STRUCTURE OF RELEASE FACTOR RF3 TRAPPED IN THE GTP STATE ON A ROTATED CONFORMATION OF THE RIBOSOME (WITHOUT VIOMYCIN) X-RAY DIFFRACTION 1-11-12 J.ZHOU,L.LANCASTER,S.TRAKHANOV,H.F.NOLLER TYPEII RELEASE FACTOR BINDING WITH RIBOSOME, RIBOSOME 3.70 ESCHERICHIA COLI,ESCHERICHIA COLI 2BTE THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION AND A POST-TRANSFER EDITING SUBSTRATE ANALOGUE X-RAY DIFFRACTION 9-15-05 S.CUSACK,M.TUKALO,A.YAREMCHUK,R.FUKUNAGA,S.YOKOYAMA AMINOACYL-TRNA SYNTHETASE, CLASS I AMINOACYL-TRNA SYNTHETASE EDITING, SYNTHETASE 2.9 THERMUS THERMOPHILUS 1WWD NMR STRUCTURE DETERMINED FOR MLV NC COMPLEX WITH RNA SEQUENCE AACAGU SOLUTION NMR 3-22-05 A.DEY,D.YORK,A.SMALLS-MANTEY,M.F.SUMMERS HYDROPHOBIC GUANOSINE BINDING POCKET, VIRAL PROTEIN/RNA COMPLEX MOLONEY MURINE LEUKEMIA VIRUS 1QES TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES SOLUTION NMR 6-05-97 J.A.MCDOWELL,L.HE,X.CHEN,D.H.TURNER RIBONUCLEIC ACID, G:U MISMATCH, RNA synthetic 3LOB CRYSTAL STRUCTURE OF FLOCK HOUSE VIRUS CALCIUM MUTANT X-RAY DIFFRACTION 4-21-10 J.E.JOHNSON,M.BANERJEE,J.A.SPEIR,R.HUANG VIRUS, FLOCK HOUSE VIRUS, RNA, BETA-BARREL, JELLYROLL, ASPARTYL PROTEASE, CAPSID PROTEIN, HYDROLASE, PROTEASE, VIRION, ICOSAHEDRAL VIRUS 3.60 SPODOPTERA FRUGIPERDA 4JRT CRYSTAL STRUCTURE OF AN A-FORM RNA DUPLEX CONTAINING THREE GU BASE PAIRS X-RAY DIFFRACTION 6-05-13 J.KONDO,A.C.DOCK-BREGEON,D.K.WILLKOMM,R.K.HARTMANN,E.WESTHOF A-FORM RNA, RIBOSE-ZIPPER MOTIF, GU BASE PAIR, RNA 2.60 synthetic,synthetic 1TXS STEM-LOOP D OF THE CLOVERLEAF DOMAIN OF ENTEROVIRAL 5'UTR RNA SOLUTION NMR 10-05-04 Z.DU,J.YU,N.B.ULYANOV,R.ANDINO,T.L.JAMES TETRALOOP UACG, CLOSING WOBBLE UG PAIR, PYRIMIDINE- PYRIMIDINE MISMATCHES, TWO-NUCLEOTIDE BULGE, RNA synthetic 1BJ2 RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, 8 STRUCTURES SOLUTION NMR 2-02-99 A.J.LEE,D.M.CROTHERS COLE1 RNA, NMR, LOOP-LOOP COMPLEX, KISS COMPLEX, RIBONUCLEIC ACID synthetic,synthetic 2F88 SOLUTION NMR STRUCTURE OF DOMAIN 5 FROM THE PYAIELLA LITTORALIS (PL) GROUP II INTRON SOLUTION NMR 2-28-06 K.T.DAYIE RNA HAIRPIN, GNRA TETRALOOP, INTERNAL BULGE, MG METAL BINDING SITE synthetic 1I9X CRYSTAL STRUCTURE OF BPS-U2 SNRNA DUPLEX X-RAY DIFFRACTION 9-05-01 J.A.BERGLUND,M.ROSBASH,S.C.SCHULTZ PRE-MRNA SPLICING, BULGED ADENOSINE, THREE HELIX JUNCTION 2.18 synthetic 1N33 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT BOUND TO CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION AT THE A SITE WITH PAROMOMYCIN X-RAY DIFFRACTION 11-29-02 J.M.OGLE,F.V.MURPHY IV,M.J.TARRY,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME, A SITE, DECODING, NEAR- COGNATE, MISMATCH, WOBBLE, GU, G:U, TRANSFER RNA, TRNA, ANTICODON, STEM-LOOP, MESSENGER RNA, MRNA, CODON, ANTIBIOTIC, PAROMOMYCIN 3.35 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 4A4U UNAC TETRALOOPS: TO WHAT EXTENT CAN THEY MIMIC GNRA TETRALOOPS SOLUTION NMR 5-30-12 Q.ZHAO,H.HUANG,U.NAGASWAMY,Y.XIA,X.GAO,G.FOX RNA, EVOLUTION, UMAC TETRALOOP HALOARCULA MARISMORTUI 3PDR CRYSTAL STRUCTURE OF MANGANESE BOUND M-BOX RNA X-RAY DIFFRACTION 2-23-11 A RAMESH,W.C.WINKLER MANGANESE-RNA COMPLEX, RNA 1.85 BACILLUS SUBTILIS 3PO3 ARRESTED RNA POLYMERASE II REACTIVATION INTERMEDIATE X-RAY DIFFRACTION 3-02-11 A.C.M.CHEUNG,P.CRAMER RNA POLYMERASE II, MRNA, TRANSCRIPTION, ARREST, BACKTRACKING, CLEAVAGE, TRANSFERASE-DNA-RNA COMPLEX 3.30 synthetic 3WC1 CRYSTAL STRUCTURE OF C. ALBICANS TRNA(HIS) GUANYLYLTRANSFERASE (THG1) WITH A G-1 DELETED TRNA(HIS) X-RAY DIFFRACTION 12-18-13 A.NAKAMURA,T.NEMOTO,T.SONODA,K.YAMASHITA,I.TANAKA,M.YAO PROTEIN-TRNA COMPLEX, TRANSFERASE-RNA COMPLEX 4.18 synthetic 2IZ9 MS2-RNA HAIRPIN (4ONE-5) COMPLEX X-RAY DIFFRACTION 7-27-06 E.GRAHN,N.J.STONEHOUSE,C.J.ADAMS,K.FRIDBORG,L.BEIGELMAN, J.MATULIC-ADAMIC,S.L.WARRINER,P.G.STOCKLEY,L.LILJAS VIRUS/RNA, HAIRPIN, CAPSID, LEVIVIRUS, VIRUS, COMPLEX (CAPSID PROTEIN/RNA HAIRPIN) 2.85 ENTEROBACTERIO PHAGE MS2 1KFO CRYSTAL STRUCTURE OF AN RNA HELIX RECOGNIZED BY A ZINC- FINGER PROTEIN: AN 18 BASE PAIR DUPLEX AT 1.6 RESOLUTION X-RAY DIFFRACTION 12-07-01 S.LIMA,J.HILDENBRAND,A.KOROSTELEV,S.HATTMAN,H.LI RNA 1.60 synthetic 1Y77 COMPLETE RNA POLYMERASE II ELONGATION COMPLEX WITH SUBSTRATE ANALOGUE GMPCPP X-RAY DIFFRACTION 1-04-05 H.KETTENBERGER,K.-J.ARMACHE,P.CRAMER TRANSCRIPTION, SUBSTRATE, NTP, ELONGATION, TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRID COMPLEX 4.50 synthetic 1J4Y SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE) SOLUTION NMR 7-17-02 J.CABELLO-VILLEGAS,M.E.WINKLER,E.P.NIKONOWICZ RNA STEM-LOOP, TRINUCLEOTIDE LOOP, HAIRPIN synthetic 2D6F CRYSTAL STRUCTURE OF GLU-TRNA(GLN) AMIDOTRANSFERASE IN THE COMPLEX WITH TRNA(GLN) X-RAY DIFFRACTION 7-11-06 O.NUREKI LIGASE, RNA, LIGASE/RNA COMPLEX 3.15 synthetic 1A9L SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF, NMR, 12 STRUCTURES SOLUTION NMR 6-17-98 J.L.DIENER,P.B.MOORE ARCHAEAL BULGE-HELIX-BULGE MOTIF, PRE-TRNA SPLICING, NMR, ARCHAEA, RNA STRUCTURE,RIBONUCLEIC ACID synthetic 2HGH TRANSCRIPTION FACTOR IIIA ZINC FINGERS 4-6 BOUND TO 5S RRNA 55MER (NMR STRUCTURE) SOLUTION NMR 8-01-06 B.M.LEE ZINC FINGER, TRANSCRIPTION-RNA COMPLEX XENOPUS LAEVIS 1R9F CRYSTAL STRUCTURE OF P19 COMPLEXED WITH 19-BP SMALL INTERFERING RNA X-RAY DIFFRACTION 1-27-04 K.YE,L.MALININA,D.J.PATEL PROTEIN-RNA COMPLEX, DIMER, DOUBLE HELIX, VIRAL PROTEIN/RNA COMPLEX 1.85 synthetic,synthetic 2L3E SOLUTION STRUCTURE OF P2A-J2A/B-P2B OF HUMAN TELOMERASE RNA SOLUTION NMR 11-17-10 Q.ZHANG,N.KIM,R.D.PETERSON,Z.WANG,J.FEIGON HUMAN TELOMERASE RNA, HTR, P2A, P2B, J2AB, RNA synthetic 2QOY CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN AND NEOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH SPECTINOMYCIN AND NEOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.50 ESCHERICHIA COLI 3GCA THE STRUCTURAL BASIS FOR RECOGNITION OF THE PREQ0 METABOLITE BY AN UNUSUALLY SMALL RIBOSWITCH APTAMER DOMAIN X-RAY DIFFRACTION 3-03-09 R.C.SPITALE,J.E.WEDEKIND PREQ1, PREQ0, RIBOSWITCH, RNA, RIBOSOMAL BINDING SITE, AMPTAMER, METABOLITE 2.75 synthetic 3J43 STRUCTURE OF THE METHANOCOCCUS JANNASCHII RIBOSOME-SECYEBETA CHANNEL COMPLEX (30S RIBOSOMAL SUBUNIT) ELECTRON MICROSCOPY 10-23-13 P.PARK,J.F.MENETRET,J.C.GUMBART,S.J.LUDTKE,W.LI,A.WHYNOT, T.A.RAPOPORT,C.W.AKEY ARCHAEA, ARCHAEAL, RIBOSOMAL, 30S, PROTEIN SYNTHESIS, RNA, PROTEIN TRANSLOCATION CHANNEL, RIBOSOME-PROTEIN TRANSPORT COMPLEX 9.00 METHANOCOCCUS JANNASCHII,METHANOCOCCUS JANNASCHII 2YDH CRYSTAL STRUCTURE OF THE SAM-I RIBOSWITCH A94G U34 G18U G19U VARIANT IN COMLEX WITH SAM X-RAY DIFFRACTION 9-07-11 K.T.SCHROEDER,P.DALDROP,D.M.J.LILLEY RNA, K-TURN 2.90 THERMOANAEROBACTER TENGCONGENSIS 3LA5 X-RAY CRYSTAL STRUCTURE OF MC6 RNA RIBOSWITCH BOUND TO AZACYTOSINE X-RAY DIFFRACTION 1-26-10 M.S.DUNSTAN,D.LEYS RNA, RIBOSWITCH, GENE REGULATION, SYNTHETIC BIOLOGY 1.70 BACILLUS SUBTILIS 1J5E STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 4-12-02 B.T.WIMBERLY,D.E.BRODERSEN,W.M.CLEMONS JR.,R.MORGAN-WARREN, A.P.CARTER,C.VONRHEIN,T.HARTSCH,V.RAMAKRISHNAN S RIBOSOMAL SUBUNIT, RIBOSOME 3.05 THERMUS THERMOPHILUS 2WRQ THE CRYSTAL STRUCTURE OF THE 70S RIBOSOME BOUND TO EF-TU AND TRNA (PART 3 OF 4). X-RAY DIFFRACTION 10-20-09 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, TRANSLATION, ZINC-FINGER, RNA-BINDING, RRNA-BINDING, METAL-BINDING, ELONGATION FACTOR, TRNA, EF-TU, GTPASE, RIBOSOME, DECODING 3.60 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS,ESCHERICHIA COLI,synthetic 3P22 CRYSTAL STRUCTURE OF THE ENE, A VIRAL RNA STABILITY ELEMENT, IN COMPLEX WITH A9 RNA X-RAY DIFFRACTION 12-08-10 R.M.MITTON-FRY,S.J.DEGREGORIO,J.WANG,T.A.STEITZ,J.A.STEITZ MAJOR GROOVE TRIPLE HELIX, VIRAL NON-CODING RNA, STABILITY ELEMENT, NUCLEUS, RNA 2.50 synthetic,synthetic 1NBS CRYSTAL STRUCTURE OF THE SPECIFICITY DOMAIN OF RIBONUCLEASE P RNA X-RAY DIFFRACTION 2-18-03 A.S.KRASILNIKOV,X.YANG,T.PAN,A.MONDRAGON RIBONUCLEASE P RNA, P RNA, S-DOMAIN 3.15 BACILLUS SUBTILIS 1MSY GUAA TETRALOOP MUTANT OF SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA X-RAY DIFFRACTION 2-25-03 C.C.CORRELL,K.SWINGER A-MINOR MOTIF, SARCIN/RICIN LOOP, RNA STRUCTURE, RNA TERTIARY CONTACTS, RNA MOTIFS, CONFORMATIONAL CHANGE, RNA- PROTEIN RECOGNITION, HYDRATION 1.41 synthetic 300D CAPTURING THE STRUCTURE OF A CATALYTIC RNA INTERMEDIATE: RNA HAMMERHEAD RIBOZYME, MN(II)-SOAKED X-RAY DIFFRACTION 1-24-97 W.G.SCOTT,J.B.MURRAY,J.R.P.ARNOLD,B.L.STODDARD,A.KLUG RNA HAMMERHEAD RIBOZYME, CATALYTIC RNA, LOOP 3.00 synthetic,synthetic 4ERL CRYSTAL STRUCTURE OF THE LYSINE RIBOSWITCH BOUND TO A LYSINE-GLYCINE DIPEPTIDE X-RAY DIFFRACTION 7-18-12 A.D.GARST,E.PORTER,R.T.BATEY RIBOSWITCH APTAMER DOMAIN, REGULATORY MRNA, TRANSCRIPTION 3.00 THERMOTOGA MARITIMA 3DJ0 CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO L-4-OXALYSINE X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV LYSINE RIBSOWITCH, OXALYSINE, RNA 2.50 synthetic 3IAB CRYSTAL STRUCTURE OF RNASE P /RNASE MRP PROTEINS POP6, POP7 IN A COMPLEX WITH THE P3 DOMAIN OF RNASE MRP RNA X-RAY DIFFRACTION 1-26-10 A.PEREDERINA,O.A.ESAKOVA,C.QUAN,E.KHANOVA,A.S.KRASILNIKOV RNASE P, RNASE MRP, RIBONUCLEASE P, RIBONUCLEASE MRP, POP6, POP6P, POP7, POP7P, P3, NME1, YEAST, TRNA, PRE-TRNA, RRNA, RIBOZYME, PROTEIN-RNA COMPLEX, ALBA, HETERODIMER, COILED COIL, HYDROLASE, NUCLEUS, RRNA PROCESSING, TRNA PROCESSING, PHOSPHOPROTEIN, HYDROLASE-RNA COMPLEX 2.70 synthetic 1UON REOVIRUS POLYMERASE LAMBDA-3 LOCALIZED BY ELECTRON CRYOMICROSCOPY OF VIRIONS AT 7.6-A RESOLUTION ELECTRON MICROSCOPY 11-13-03 X.ZHANG,S.B.WALKER,P.R.CHIPMAN,M.L.NIBERT,T.S.BAKER POLYMERASE, REOVIRUS, CRYOEM, CORE PROTEIN 7.60 synthetic,synthetic 2D19 SOLUTION RNA STRUCTURE OF LOOP REGION OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER SOLUTION NMR 11-01-05 S.BABA,K.TAKAHASHI,S.NOGUCHI,H.TAKAKU,Y.KOYANAGI,N.YAMAMOTO, G.KAWAI DIS, HIV-1, RNA, STRUCTURE, NMR synthetic 1QLN STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX X-RAY DIFFRACTION 2-04-00 G.M.T.CHEETHAM,T.A.STEITZ NUCLEOTIDYLTRANSFERASE, T7 RNA POLYMERASE, PROTEIN/DNA/RNA 2.4 BACTERIOPHAGE T7 4K4T POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R4_FORM) X-RAY DIFFRACTION 5-22-13 P.GONG,O.B.PEERSEN POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.75 synthetic,synthetic,synthetic 1DQF CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS X-RAY DIFFRACTION 11-13-00 Y.XIONG,M.SUNDARALINGAM DOUBLE HELIX, CYTOSINE BULGE, RNA 2.20 synthetic,synthetic 3OH7 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH CHLORAMPHENICOL. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, CHLORAMPHENICOL, RIBOSOME-ANTIBIOTIC COMPLEX 3.00 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1PGL BEAN POD MOTTLE VIRUS (BPMV), MIDDLE COMPONENT X-RAY DIFFRACTION 11-18-03 T.LIN,J.CAVARELLI,J.E.JOHNSON COMOVIRUS, VIRUS, VIRAL COAT PROTEIN, BEAN POD MOTTLE VIRUS (BPMV), ICOSAHEDRAL VIRUS, VIRUS/RNA COMPLEX 2.80 BEAN-POD MOTTLE VIRUS (STRAIN 4E8T STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE OF K+, CA2+ AND AN OLIGONUCLEOTIDE FRAGMENT SUBSTRATE (LOW ENERGY DATASET) X-RAY DIFFRACTION 11-14-12 M.MARCIA,A.M.PYLE RIBOZYME, METALLOENZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA 3.34 OCEANOBACILLUS IHEYENSIS,synthetic 3HHZ COMPLEX OF THE VESICULAR STOMATITIS VIRUS NUCLEOCAPSID AND THE NUCLEOCAPSID-BINDING DOMAIN OF THE PHOSPHOPROTEIN X-RAY DIFFRACTION 7-28-09 T.J.GREEN,M.LUO PROTEIN, RNA, TEMPLATE, REPLICATION, NEGATIVE STRAND RNA VIRUS, CHAPERONE, CYTOPLASM, PHOSPHOPROTEIN, RNA REPLICATION, VIRION, RIBONUCLEOPROTEIN, RNA-BINDING, VIRAL NUCLEOPROTEIN, VIRAL PROTEIN, VIRAL PROTEIN/RNA COMPLEX 3.50 ESCHERICHIA COLI 1AKX HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE SOLUTION NMR 11-19-97 A.S.BRODSKY,J.R.WILLIAMSON TRANSCRIPTIONAL ACTIVATION, NMR, COMPLEX (RNA/LIGAND), PROTEIN-RNA INTERACTIONS synthetic 2OOM NMR STRUCTURE OF A KISSING COMPLEX FORMED BETWEEN THE TAR RNA ELEMENT OF HIV-1 AND A LNA/RNA APTAMER SOLUTION NMR 1-29-08 I.LEBARS,T.RICHARD,C.DI PRIMO,J.J.TOULME LNA; LOCKED NUCLEIC ACID; NMR; APTAMER; TAR; HIV-1, RNA synthetic,synthetic 2JLZ DENGUE VIRUS 4 NS3 HELICASE IN COMPLEX WITH SSRNA AND ADP X-RAY DIFFRACTION 11-25-08 D.H.LUO,T.XU,R.P.WATSON,D.S.BECKER,A.SAMPATH,W.JAHNKE, S.S.YEONG,C.H.WANG,S.P.LIM,S.G.VASUDEVAN,J.LESCAR RIBONUCLEOPROTEIN, NUCLEOTIDE-BINDING, SECRETED, HELICASE, PROTEASE, HYDROLASE, TRANSFERASE, VIRAL NUCLEOPROTEIN, ENDOPLASMIC RETICULUM, CLEAVAGE ON PAIR OF BASIC RESIDUES, MULTIFUNCTIONAL ENZYME, TRANSCRIPTION REGULATION, ADP, SSRNA, VIRION, ATPASE, NUCLEUS, MEMBRANE, NUCLEOTIDYLTRANSFERASE, NS3 HELICASE STRUCTURE, ATP-BINDING, RNA-BINDING, FLAVIVIRUSES, GLYCOPROTEIN, RNA-DIRECTED RNA POLYMERASE, HYDROLASE/RNA, RNA REPLICATION, SERINE PROTEASE, ENVELOPE PROTEIN, DENGUE VIRUS, METAL-BINDING, TRANSMEMBRANE, TRANSCRIPTION, PHOSPHOPROTEIN, CAPSID PROTEIN 2.2 synthetic 1E4P STRUCTURE OF THE RIBOZYME SUBSTRATE HAIRPIN OF NEUROSPORA VS RNA. A CLOSE LOOK AT THE CLEAVAGE SITE SOLUTION NMR 1-16-01 P.J.A.MICHIELS,C.H.J.SCHOUTEN,H.A.HEUS,C.W.HILBERS RNA RIBOZYME, SUBSTRATE HAIRPIN NEUROSPORA SP. 3V22 CRYSTAL STRUCTURE OF RMF BOUND TO THE 70S RIBOSOME. THIS PDB ENTRY CONTAINS COORDINATES FOR THE 30S SUBUNIT WITH BOUND RMF OF THE 1ST RIBOSOME IN THE ASU X-RAY DIFFRACTION 5-23-12 Y.S.POLIKANOV,G.M.BLAHA,T.A.STEITZ RIBOSOME MODULATION FACTOR, STRESS RESPONSE, SMALL SUBUNIT HEAD MOVEMENT, STATIONARY PHASE, RIBOSOME HIBERNATION, RIBOSOME 3.00 THERMUS THERMOPHILUS 1MFJ ' STEM-LOOP FROM HUMAN U4 SNRNA SOLUTION NMR 11-06-02 L.R.COMOLLI,N.B.ULYANOV,T.L.JAMES,W.H.GMEINER RIBONUCLEIC ACID, RNA OLIGONUCLEOTIDE, STEM-AND-LOOP, U4 SMALL NUCLEAR RNA, UACG TETRALOOP synthetic 2GV4 SOLUTION STRUCTURE OF THE POLIOVIRUS 3'-UTR Y-STEM SOLUTION NMR 3-20-07 H.A.HEUS,J.ZOLL,M.TESSARI,F.J.M.VAN KUPPEVELD,W.J.G.MELCHERS RNA, POLIOVIRUS, STEM-LOOP, PSEUDO-2-FOLD SYMMETRY synthetic 1ATO THE STRUCTURE OF THE ISOLATED, CENTRAL HAIRPIN OF THE HDV ANTIGENOMIC RIBOZYME, NMR, 10 STRUCTURES SOLUTION NMR 11-12-97 M.H.KOLK,H.A.HEUS,C.W.HILBERS CENTRAL LOOP, HEPATITIS DELTA VIRUS, RIBOZYME, RNA HAIRPIN HEPATITIS DELTA VIRUS 3S2D RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA CONTAINING A 5BR- U X-RAY DIFFRACTION 8-10-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.20 synthetic 2EEV GUANINE RIBOSWITCH U22C, A52G MUTANT BOUND TO HYPOXANTHINE X-RAY DIFFRACTION 11-13-07 S.D.GILBERT,C.E.LOVE,R.T.BATEY RIBOSWITCH, MRNA, HYPOXANTHINE, GUANINE, THREE-WAY JUNCTION, RNA-LIGAND COMPLEX, DOUBLE HELIX, BASE TRIPLE 1.95 synthetic 2UXD CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA CGGG IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT. X-RAY DIFFRACTION 10-02-07 C.M.DUNHAM,M.SELMER,S.S.PHELPS,A.C.KELLEY,T.SUZUKI,S.JOSEPH, V.RAMAKRISHNAN RIBONUCLEOPROTEIN, 30S RIBOSOMAL SUBUNIT, FRAMESHIFT SUPPRESSOR TRNA, TRNA, ZINC, MRNA, CODON, A SITE, RIBOSOME, DECODING, METAL-BINDING, MESSENGER RNA, RIBOSOMAL PROTEIN, RNA-BINDING, COILED COIL, PAROMOMYCIN, RNA- BINDING, ANTICODON, STEM-LOOP, FRAMESHIFT, ZINC-FINGER, RRNA-BINDING, TRNA-BINDING, TRANSFER RNA 3.2 THERMUS THERMOPHILUS,synthetic,synthetic 4LJ0 NAB2 ZN FINGERS COMPLEXED WITH POLYADENOSINE X-RAY DIFFRACTION 10-09-13 M.STEWART,S.I.KUHLMANN,E.VALKOV ZN FINGER, POLYADENYLATION, POLYADENOSINE RNA, RNA BINDING PROTEIN 2.15 synthetic 3TVH CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-LEU COMPLEX X-RAY DIFFRACTION 3-21-12 N.DEMESHKINA,L.JENNER,M.YUSUPOV,G.YUSUPOVA RIBOSOME, RNA, TRNA, TRANSLATION, MRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3PYS CRYSTAL STRUCTURE OF A COMPLEX CONTAINING DOMAIN 3 OF CRPV IGR IRES RNA BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME. X-RAY DIFFRACTION 2-09-11 J.ZHU,A.KOROSTELEV,D.COSTANTINO,H.F.NOLLER,J.S.KIEFT S, RIBOSOME, IGR, IRES, PSIV, CRPV 3.40 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1ATV HAIRPIN WITH AGAA TETRALOOP, NMR, 4 STRUCTURES SOLUTION NMR 2-25-98 H.KANG RIBONUCLEIC ACID, RNA, HAIRPIN synthetic 3OLA POLIOVIRUS POLYMERASE ELONGATION COMPLEX WITH 2'-DEOXY-CTP X-RAY DIFFRACTION 12-22-10 P.GONG,O.B.PEERSEN RNA-DEPENDENT RNA POLYMERASE, ELONGATION COMPLEX, VIRUS, PROTEIN-RNA COMPLEX, TRANSFERASE-RNA COMPLEX 2.55 synthetic,synthetic,synthetic 3PTX CRYSTAL STRUCTURE OF A VESICULAR STOMATITIS VIRUS NUCLEOCAPSID-POLYA COMPLEX X-RAY DIFFRACTION 1-12-11 M.LUO,T.J.GREEN,M.ROWSE RNA, NUCLEOCAPSID, VIRAL PROTEIN-RNA COMPLEX 3.00 synthetic 2AB4 DISSECTING THE ROLES OF A STRICTLY CONSERVED TYROSINE IN SUBSTRATE RECOGNITION AND CATALYSIS BY PSEUDOURIDINE 55 SYNTHASE X-RAY DIFFRACTION 12-13-05 K.PHANNACHET,Y.ELIAS,R.H.HUANG RNA MODIFICATIONS, ISOMERASE/RNA COMPLEX 2.40 synthetic 1FMN SOLUTION STRUCTURE OF FMN-RNA APTAMER COMPLEX, NMR, 5 STRUCTURES SOLUTION NMR 7-11-96 P.FAN,A.K.SURI,R.FIALA,D.LIVE,D.J.PATEL FMN-RNA COMPLEX, FMN-ADENINE PAIRING, FMN INTERCALATION, BASE TRIPLE PLATFORM, BASE PAIR MISMATCHES synthetic 2JWV STRUCTURE OF A HIGH AFFINITY ANTI-NFKB RNA APTAMER SOLUTION NMR 1-08-08 N.J.REITER,L.MAHER III,S.E.BUTCHER RNA, ASYMMETRIC INTERNAL BULGE, STEM LOOP synthetic 3LRN CRYSTAL STRUCTURE OF HUMAN RIG-I CTD BOUND TO A 14 BP GC 5' PPP DSRNA X-RAY DIFFRACTION 6-02-10 P.LI INNATE IMMUNITY, VIRAL RNA SENSING, RIG-I LIKE RECEPTORS, ANTIVIRAL DEFENSE, ATP-BINDING, HELICASE, IMMUNE RESPONSE, METAL-BINDING, NUCLEOTIDE-BINDING, RNA-BINDING, HYDROLASE-RNA COMPLEX 2.60 synthetic 2QOU CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH SPECTINOMYCIN. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH SPECTINOMYCIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 8-14-07 M.A.BOROVINSKAYA,S.SHOJI,J.M.HOLTON,K.FREDRICK,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE, RIBOSOME 3.93 ESCHERICHIA COLI 3L0U THE CRYSTAL STRUCTURE OF UNMODIFIED TRNAPHE FROM ESCHERICHIA COLI X-RAY DIFFRACTION 3-16-10 R.T.BYRNE,A.L.KONEVEGA,M.V.RODNINA,A.A.ANTSON TRANSFER RNA, TRNA, TRANSCRIPT, UNMODIFIED, RNA 3.00 synthetic 2WDH STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME IN COMPLEX WITH MRNA, PAROMOMYCIN, ACYLATED A-SITE TRNA, DEACYLATED P-SITE TRNA, AND E-SITE TRNA. THIS FILE CONTAINS THE 30S SUBUNIT A-,P-, AND E-SITE TRNAS AND PAROMOMYCIN FOR MOLECULE II. X-RAY DIFFRACTION 4-14-09 R.M.VOORHEES,A.WEIXLBAUMER,D.LOAKES,A.C.KELLEY, V.RAMAKRISHNAN METAL-BINDING, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSLATION, COILED COIL, TRNA-BINDING, RRNA-BINDING, TRNA, ZINC, MRNA, RIBOSOME, RNA-BINDING, ZINC-FINGER 3.30 THERMUS THERMOPHILUS,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2C06 NMR-BASED MODEL OF THE COMPLEX OF THE TOXIN KID AND A 5- NUCLEOTIDE SUBSTRATE RNA FRAGMENT (AUACA) SOLUTION NMR 2-08-06 M.B.KAMPHUIS,A.M.J.J.BONVIN,M.C.MONTI,M.LEMONNIER, A.MUNOZ-GOMEZ,R.H.H.VAN DEN HEUVEL,R.DIAZ-OREJAS,R.BOELENS DOCKING, DNA REPLICATION, MAZF, PLASMID MAINTENANCE, POST SEGREGATIONAL KILLING, PROTEIN-RNA COMPLEX, RIBONUCLEASE, RNA CLEAVAGE, RNASE, TOXIN-ANTITOXIN, TOXIN synthetic 2QH2 SOLUTION STRUCTURE OF THE CR7 TERMINAL HAIRPIN LOOP FROM HUMAN TELOMERASE RNA SOLUTION NMR 9-25-07 J.FEIGON,C.A.THEIMER,N CHIM,K.E.BREECE LOOP, WOBBLE BASE PAIR, SYN G, RNA synthetic 3BO2 A RELAXED ACTIVE SITE FOLLOWING EXON LIGATION BY A GROUP I INTRON X-RAY DIFFRACTION 4-01-08 S.V.LIPCHOCK,S.A.STROBEL GROUP I INTRON, AZOARCUS, RIBOZYME, LIGATION, ACETYLATION, MRNA PROCESSING, MRNA SPLICING, NUCLEUS, RIBONUCLEOPROTEIN, RNA-BINDING, SPLICEOSOME, NUCLEAR PROTEIN/RNA COMPLEX 3.31 HOMO SAPIENS,synthetic,synthetic,synthetic 3KNM THE STRUCTURES OF CAPREOMYCIN BOUND TO THE 70S RIBOSOME. THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE I. X-RAY DIFFRACTION 2-16-10 R.E.STANLEY,G.BLAHA ANTI-TUBERCULOSIS ANTIBIOTIC, 70S, RIBOSOME, TRNA, MRNA, TUBERACTINOMYCIN, CAPREOMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.45 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS HB8 3UZ2 CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-LEU COMPLEX WITH PAROMOMYCIN. X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA, RIBOSOME-ANTIBIOTIC COMPLEX 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3P4A 'FLUORO MODIFIED RNA OCTAMER FA2U2 X-RAY DIFFRACTION 1-05-11 M MANOHARAN,A.AKINC,R.K.PANDEY,J.QIN,P.HADWIGER,M.JOHN,K.MILLS, K.CHARISSE,M.A.MAIER,L.NECHEV,E.M.GREENE,P.S.PALLAN,E.ROZNERS, K.G.RAJEEV,M.EGLI RNA, 2'-FLUORO-RNA, O2'-MODIFICATION, OCTAMER, 2'-FLUORO 2'- DEOXYCYTIDINE, 2'-FLUORO 2'-DEOXYGUANOSINE, 2'-FLUORO 2'- DEOXYADENOSINE, 2'-FLUORO 2'-DEOXYURIDINE, SIRNA 1.20 synthetic 3OK4 CRYSTAL STRUCTURE OF THE ANA:RNA DECAMER SUFFERING FROM LATTICE TRANSLOCATION DEFECTS X-RAY DIFFRACTION 11-30-11 M.OVAERE,L.VAN MEERVELT ALTRITOL, SUGAR MODIFICATION, RNA, LATTICE TRANSLOCATION DEFECT 1.15 synthetic 3QJJ ONE RAMP PROTEIN BINDING DIFFERENT RNA SUBSTRATES X-RAY DIFFRACTION 2-08-12 R.WANG,H.ZHENG,G.PREAMPLUME,H.LI SINGLE-STRANDED RNA BINDING, WORK IN IMMUNE SYSTEM IN PROKARYOTES, IMMUNE SYSTEM-RNA COMPLEX 2.80 synthetic 165D THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE X-RAY DIFFRACTION 8-31-94 W.CRUSE,P.SALUDJIAN,E.BIALA,P.STRAZEWSKI,T.PRANGE,O.KENNARD A-DNA/RNA, DOUBLE HELIX, OVERHANGING BASES, MODIFIED, MISMATCHED, DNA-RNA HYBRID 1.55 synthetic 3AMU CRYSTAL STRUCTURE OF THE TIAS-TRNA(ILE2)-AMPCPP-AGMATINE COMPLEX X-RAY DIFFRACTION 10-19-11 T.NUMATA,T.OSAWA TIAS, TRNA(ILE2), MODIFICATION, RNA BINDING PROTEIN-RNA COMPLEX 3.10 ARCHAEOGLOBUS FULGIDUS 3OFQ CRYSTAL STRUCTURE OF THE E. COLI RIBOSOME BOUND TO ERYTHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. X-RAY DIFFRACTION 10-13-10 J.A.DUNKLE,L.XIONG,A.S.MANKIN,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, TRNA, TRANSFER, ANTIBIOTIC, EXIT, PEPTIDYL, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, LARGE, RIBOSOME 3.10 ESCHERICHIA COLI,ESCHERICHIA COLI 2F8K SEQUENCE SPECIFIC RECOGNITION OF RNA HAIRPINS BY THE SAM DOMAIN OF VTS1 X-RAY DIFFRACTION 1-24-06 T.AVIV,Z.LIN,G.BEN-ARI,C.A.SMIBERT,F.SICHERI VTS1/RNA COMPLEX, SAM DOMAIN, RNA BINDING PROTEIN/ RNA COMPLEX 2.00 synthetic 2B9P S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A STOP CODON IN THE A-SITE. THIS FILE CONTAINS THE 50S SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A STOP CODON IN THE A-SITE AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 1-10-06 S.PETRY,D.E.BRODERSEN,F.V.MURPHY IV,C.M.DUNHAM,M.SELMER, M.J.TARRY,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRANSLATION 6.46 THERMUS THERMOPHILUS HB8,THERMUS THERMOPHILUS 2KXM SOLUTION NMR STRUCTURE OF THE 27 NUCLEOTIDE ENGINEERED NEOMYCIN SENSING RIBOSWITCH RNA-RIBOSTMYCIN COMPLEX SOLID-STATE NMR 4-20-11 D.ELKE,W.E.JULIA,O.OLIVER,S.R.SINA,S.BEATRIX,W.JENS RIBOSWITCHES, RNA-LIGAND INTERACTION, AMINOGLYCOSIDES, RNA RECOGNITION, ANTIBIOTIC, RNA-ANTIBIOTIC COMPLEX synthetic 3UZF CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 50S RIBOSOMAL SUBUNIT OF THE FIRST 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE NEAR-COGNATE TRNA-TYR COMPLEX X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.30 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3AVV STRUCTURE OF VIRAL RNA POLYMERASE COMPLEX 3 X-RAY DIFFRACTION 1-18-12 D.TAKESHITA,K.TOMITA RNA POLYMERASE, TRANSLATION, TRANSFERASE-RNA COMPLEX 3.12 synthetic,synthetic 1JBT CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG X-RAY DIFFRACTION 10-26-01 X.YANG,T.GERCZEI,L.GLOVER,C.C.CORRELL RESTRICTOCIN, RIBOTOXIN, HIGHLY SPECIFIC RIBONUCLEASE, RIBONUCLEASE T1, PROTEIN-RNA RECOGNITION, HYDROLASE/RNA COMPLEX 2.70 synthetic 2JXS NMR STRUCTURE OF RNA DUPLEX CONTAINING SINGLE ADENOSINE BULGE SOLUTION NMR 5-20-08 L.POPENDA,R.W.ADAMIAK,Z.GDANIEC RNA, DUPLEX, BULGE synthetic,synthetic 1A4T SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES SOLUTION NMR 4-29-98 Z.CAI,A.A.GORIN,R.FREDERICK,X.YE,W.HU,A.MAJUMDAR,A.KETTANI, D.J.PATEL BACTERIOPHAGE TRANSCRIPTIONAL ANTITERMINATION, PEPTIDE-RNA RECOGNITION, GNRA LOOP, BENT ALPHA-HELICAL PEPTIDE, TRANSCRIPTION REGULATION, TRANSCRIPTION/RNA COMPLEX synthetic 3Q0S CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO2 IN COMPLEX WITH ERK2 NRE X-RAY DIFFRACTION 3-16-11 G.LU,T.M.T.HALL PUF, PUMILIO-HOMOLGY DOMAIN, GENE REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 2.00 synthetic 2J01 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I. X-RAY DIFFRACTION 9-28-06 M.SELMER,C.M.DUNHAM,F.V.MURPHY,A.WEIXLBAUMER,S.PETRY, J.R.WEIR,A.C.KELLEY,V.RAMAKRISHNAN RIBOSOME, TRNA, PAROMOMYCIN, MRNA, TRANSLATION 2.8 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 2GTT CRYSTAL STRUCTURE OF THE RABIES VIRUS NUCLEOPROTEIN-RNA COMPLEX X-RAY DIFFRACTION 9-19-06 A.A.V.ALBERTINI,A.K.WERNIMONT,T.MUZIOL,R.B.G.RAVELLI, W.WEISSENHORN,R.W.H.RUIGROK PROTEIN-RNA COMPLEX, RABIES VIRUS, NUCLEOPROTEIN, VIRAL PROTEIN, RNA BINDING PROTEIN 3.49 synthetic,synthetic 3L25 CRYSTAL STRUCTURE OF ZAIRE EBOLA VP35 INTERFERON INHIBITORY DOMAIN BOUND TO 8 BP DSRNA X-RAY DIFFRACTION 1-26-10 D.W.LEUNG,K.C.PRINS,D.M.BOREK,M.FARAHBAKHSH,J.M.TUFARIELLO, P.RAMANAN,J.C.NIX,L.A.HELGESON,Z.OTWINOWSKI,R.B.HONZATKO, C.F.BASLER,G.K.AMARASINGHE RNA BINDING DOMAIN, COILED COIL, INTERFERON ANTIVIRAL SYSTEM EVASION, RNA REPLICATION, RNA BINDING PROTEIN, TRANSCRIPTION, HOST CYTOPLASM, RNA-BINDING, VIRION, RNA BINDING PROTEIN-RNA COMPLEX 2.00 synthetic 4M2Z CRYSTAL STRUCTURE OF RNASE III COMPLEXED WITH DOUBLE-STRANDED RNA AND CMP (TYPE II CLEAVAGE) X-RAY DIFFRACTION 12-11-13 J.GAN,Y.-H.LIANG,G.X.SHAW,J.E.TROPEA,D.S.WAUGH,X.JI RNASE III, HYDROLASE, DSRNA, RNA BINDING, RNA PROCESSING, HYDROLASE- RNA COMPLEX 2.85 synthetic 3GER GUANINE RIBOSWITCH BOUND TO 6-CHLOROGUANINE X-RAY DIFFRACTION 6-23-09 S.D.GILBERT,R.T.BATEY RIBOSWITCH, MRNA, GUANINE, RNA-LIGAND COMPLEX, DOUBLE HELIX, THREE-WAY JUNCTION, BASE TRIPLE 1.70 synthetic 2JA5 CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX A X-RAY DIFFRACTION 2-20-07 F.BRUECKNER,U.HENNECKE,T.CARELL,P.CRAMER DNA-DIRECTED RNA POLYMERASE, LESION RECOGNITION, TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING, PHOTOLESION, PHOSPHORYLATION, MISINCORPORATION, RNA POLYMERASE II, TRANSCRIPTION- COUPLED REPAIR, CYCLOBUTANE PYRIMIDINE DIMER, TCR, CPD, ZINC, ARREST, STALLING, DNA LESION, METAL-BINDING, NUCLEAR PROTEIN, TRANSCRIPTION BUBBLE, NUCLEOTIDYLTRANSFERASE, DAMAGE RECOGNITION, ELONGATION COMPLEX, TRANSFERASE, THYMINE DIMER, TRANSCRIPTION 3.8 synthetic 1YIT CRYSTAL STRUCTURE OF VIRGINIAMYCIN M AND S BOUND TO THE 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-26-05 D.TU,G.BLAHA,P.B.MOORE,T.A.STEITZ VIRGINIAMYCIN M, VIRGINIAMYCIN S, ANTIBIOTIC COMPLEXES, 50S SUBUNITS, RIBOSOME 2.80 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 2R8S HIGH RESOLUTION STRUCTURE OF A SPECIFIC SYNTHETIC FAB BOUND TO P4-P6 RNA RIBOZYME DOMAIN X-RAY DIFFRACTION 12-04-07 J.D.YE,V.TERESHKO,S.S.SIDHU,S.KOIDE,A.A.KOSSIAKOFF, J.A.PICCIRILLI PROTEIN-RNA COMPLEX, FAB-RNA COMPLEX, IMMUNE SYSTEM/RNA COMPLEX 1.95 synthetic 3DEG COMPLEX OF ELONGATING ESCHERICHIA COLI 70S RIBOSOME AND EF4(LEPA)-GMPPNP ELECTRON MICROSCOPY 8-19-08 S.R.CONNELL,M.TOPF,Y.QIN,D.N.WILSON,T.MIELKE,P.FUCINI, K.H.NIERHAUS,C.M.T.SPAHN RIBOSOME, TRANSLATION, LEPA, EF4, GTP-BINDING, MEMBRANE, NUCLEOTIDE-BINDING, PERIPLASM, ANTIBIOTIC RESISTANCE, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METHYLATION 10 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2Y13 THE CRYSTAL STRUCTURE OF EF-TU AND G24A-TRNA-TRP BOUND TO A NEAR-COGNATE CODON ON THE 70S RIBOSOME X-RAY DIFFRACTION 3-09-11 T.M.SCHMEING,R.M.VOORHEES,V.RAMAKRISHNAN RIBOSOME, HIRSH TRNA 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 3UD4 THE C92U MUTANT C-DI-GMP-I RIBOSWITCH BOUND TO GPA X-RAY DIFFRACTION 1-04-12 K.D.SMITH,S.A.STROBEL RIBOSWITCH, SIGNALING PROTEIN-RNA COMPLEX 2.70 synthetic,synthetic 3A6P CRYSTAL STRUCTURE OF EXPORTIN-5:RANGTP:PRE-MIRNA COMPLEX X-RAY DIFFRACTION 12-08-09 C.OKADA,E.YAMASHITA,S.J.LEE,S.SHIBATA,J.KATAHIRA,A.NAKAGAWA, Y.YONEDA,T.TSUKIHARA EXPORTIN-5, PRE-MICRORNA, RANGTP, NUCLEAREXPORT, IMPORTIN- BETA FAMILY, ALTERNATIVE SPLICING, CYTOPLASM, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, PROTEIN TRANSPORT, RNA- BINDING, RNA-MEDIATED GENE SILENCING, TRANSPORT, TRNA- BINDING, ACETYLATION, CELL CYCLE, CELL DIVISION, GTP- BINDING, ISOPEPTIDE BOND, MITOSIS, NUCLEOTIDE-BINDING, UBL CONJUGATION, PROTEIN TRANSPORT/NUCLEAR PROTEIN/RNA COMPLEX 2.92 synthetic,synthetic 3J0U STRUCTURAL CHARACTERIZATION OF MRNA-TRNA TRANSLOCATION INTERMEDIATES (30S RIBOSOME OF CLASS2 OF THE SIX CLASSES) ELECTRON MICROSCOPY 3-21-12 X.AGIRREZABALA,H.LIAO,E.SCHREINER,J.FU,R.F.ORTIZ-MEOZ,K.SCHULTEN, R.GREEN,J.FRANK CRYOELECTRON MICROSCOPY, MOLECULAR DYNAMICS FLEXIBLE FITTING, RATCHET-LIKE ROTATION, RIBOSOME 12.10 ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI,ESCHERICHIA COLI 2DRA COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDCC AND ATP X-RAY DIFFRACTION 11-14-06 K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI PROTEIN-RNA COMPLEX, TRANSFERASE/RNA COMPLEX 2.50 synthetic 4A1C T.THERMOPHILA 60S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 6. THIS FILE CONTAINS 5S RRNA, 5.8S RRNA AND PROTEINS OF MOLECULE 4. X-RAY DIFFRACTION 11-30-11 S.KLINGE,F.VOIGTS-HOFFMANN,M.LEIBUNDGUT,S.ARPAGAUS,N.BAN EUKARYOTIC RIBOSOME, RIBOSOME, EUKARYOTIC INITIATION FACTOR 6, EIF6, 60S, TRANSLATION, LARGE RIBOSOMAL SUBUNIT, RRNA, RIBOSOMAL PROTEIN 3.52 TETRAHYMENA THERMOPHILA,TETRAHYMENA THERMOPHILA 4KJ2 CONTROL OF RIBOSOMAL SUBUNIT ROTATION BY ELONGATION FACTOR G X-RAY DIFFRACTION 7-17-13 A.PULK,J.H.D.CATE PROTEIN BIOSYNTHESIS, RIBOSOMES, EF-G, ELONGATION, FACTOR, TRANSLOCATION, RNA, GTP, GDPCP, VIOMYCIN, TRNA, TRANSFER, EXIT, PEPTIDYL, 30S, 70S, 16S, RIBOSOMAL SUBUNIT, RIBOSOME, RIBOSOME- ANTIBIOTIC COMPLEX 2.90 ESCHERICHIA COLI 2WWA CRYO-EM STRUCTURES OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME ELECTRON MICROSCOPY 12-08-09 T.BECKER,E.MANDON,S.BHUSHAN,A.JARASCH,J.P.ARMACHE,S.FUNES, F.JOSSINET,J.GUMBART,T.MIELKE,O.BERNINGHAUSEN,K.SCHULTEN, E.WESTHOF,R.GILMORE,R.BECKMANN RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, TRANSMEMBRANE, PHOSPHOPROTEIN, SIGNAL SEQUENCE, MEMBRANE, RIBOSOME, CYTOPLASM, TRANSPORT, ACETYLATION, RNA-BINDING, RRNA-BINDING, TRANSLOCATION, PROTEIN CONDUCTING CHANNEL, PROTEIN EXIT TUNNEL, ENDOPLASMIC RETICULUM, COTRANSLATIONAL PROTEIN TRANSLOCATION, UBL CONJUGATION, ISOPEPTIDE BOND, PROTEIN TRANSPORT 8.90 SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE,SACCHAROMYCES CEREVISIAE 1EFW CRYSTAL STRUCTURE OF ASPARTYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED TO TRNAASP FROM ESCHERICHIA COLI X-RAY DIFFRACTION 6-19-00 C.BRIAND,A.POTERSZMAN,S.EILER,G.WEBSTER,J.-C.THIERRY,D.MORAS ASPARTYL-TRNA SYNTHETASE, TRNA, PROTEIN/RNA COMPLEX, LIGASE/RNA 3.00 ESCHERICHIA COLI 1H2C EBOLA VIRUS MATRIX PROTEIN VP40 N-TERMINAL DOMAIN IN COMPLEX WITH RNA (HIGH-RESOLUTION VP40[55-194] VARIANT). X-RAY DIFFRACTION 4-10-03 F.X.GOMIS-RUTH,A.DESSEN,A.BRACHER,H.D.KLENK,W.WEISSENHORN VIRUS/VIRAL PROTEIN, FILOVIRUS, EBOLA VIRUS, MATRIX PROTEIN VP40, ASSEMBLY, BUDDING 1.6 ESCHERICHIA COLI 3R8T STRUCTURES OF THE BACTERIAL RIBOSOME IN CLASSICAL AND HYBRID STATES OF TRNA BINDING X-RAY DIFFRACTION 6-01-11 J.A.DUNKLE,L.WANG,M.B.FELDMAN,A.PULK,V.B.CHEN,G.J.KAPRAL,J.NOESKE, J.S.RICHARDSON,S.C.BLANCHARD,J.H.D.CATE PROTEIN BIOSYNTHESIS, RNA, TRNA, TRANSFER RNA, 50S, 70S, 23S, RIBOSOMAL SUBUNIT, RIBOSOME RECYCLING FACTOR, RRF, RIBOSOME 3.00 ESCHERICHIA COLI,ESCHERICHIA COLI 1DDY MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER X-RAY DIFFRACTION 1-01-00 D.SUSSMAN,J.C.NIX,C.WILSON RNA, TRIPLEX, VITAMIN B12, APTAMER 3.00 synthetic 2NUE CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.9-ANGSTROM RESOLUTION X-RAY DIFFRACTION 11-20-07 J.H.GAN,G.SHAW,J.E.TROPEA,D.S.WAUGH,D.L.COURT,X.JI RIBONUCLEASE III, DSRNA, RNA INTERFERENCE, ENDONUCLEOLYTIC CLEAVAGE, HYDROLASE/RNA COMPLEX 2.90 synthetic 3J06 CRYOEM HELICAL RECONSTRUCTION OF TMV ELECTRON MICROSCOPY 6-01-11 P.GE,Z.H.ZHOU RNA, VIRUS 2.80 TOBACCO MOSAIC VIRUS 1Q8N SOLUTION STRUCTURE OF THE MALACHITE GREEN RNA BINDING APTAMER SOLUTION NMR 3-23-04 J.FLINDERS,S.C.DEFINA,D.M.BRACKETT,C.BAUGH,C.WILSON, T.DIECKMANN RNA APTAMER, MALACHITE GREEN, BASE TRIPLE, BASE QUADRUPLE, RNA LIGAND INTERACTIONS synthetic 2L5Z NMR STRUCTURE OF THE A730 LOOP OF THE NEUROSPORA VS RIBOZYME SOLUTION NMR 2-16-11 G.DESJARDINS,E.BONNEAU,N.GIRARD,J.BOISBOUVIER,P.LEGAULT RNA, INTERNAL LOOP, VS RIBOZYME NEUROSPORA 3G6E CO-CRYSTAL STRUCTURE OF HOMOHARRINGTONINE BOUND TO THE LARGE RIBOSOMAL SUBUNIT X-RAY DIFFRACTION 4-28-09 G.GUREL,G.BLAHA,P.B.MOORE,T.A.STEITZ LARGE RIBOSOMAL SUBUNIT, ANTIBIOTIC SPECIFICITY, HOMOHARRINGTONINE, HALOARCULA MARISMORTUI, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METAL-BINDING, ZINC, ZINC-FINGER, ACETYLATION, RIBOSOME 2.70 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 4EYA CRYSTAL STRUCTURE OF A PLECTONEMIC RNA SUPERCOIL X-RAY DIFFRACTION 6-20-12 J.R.STAGNO,X.JI TRANSCRIPTION ELONGATION, SSRNA, DSRNA, NUSE PROTEIN, TRANSCRIPTION, TRANSCRIPTION-RNA COMPLEX 3.20 synthetic 3SYW CRYSTAL STRUCTURE OF THE TRIPLET REPEAT IN MYOTONIC DYSTROPHY REVEALS HETEROGENEOUS 1X1 NUCLEOTIDE UU INTERNAL LOOP CONFORMATIONS X-RAY DIFFRACTION 4-25-12 A.KUMAR,H.PARK,F.PENGFEI,R.PARKESH,M.GUO,K.W.NETTLES,M.D.DISNEY CUG REPEAT RNA, A-FORM RNA, MYOTONIC DYSTROPHY, INTERNAL LOOP, RNA 1.57 synthetic 3CME THE STRUCTURE OF CA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 9-23-08 M.SIMONOVIC,T.A.STEITZ RIBOSOME 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, PROTEIN-RNA COMPLEX, HYDROLYSIS OF PEPTIDYL-TRNA 2.95 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI,synthetic,synthetic 4GKK STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A HUMAN MITOCHONDRIAL ANTICODON STEM LOOP (ASL) OF TRANSFER RNA METHIONINE (TRNAMET) BOUND TO AN MRNA WITH AN AUA-CODON IN THE A-SITE AND PAROMOMYCIN X-RAY DIFFRACTION 6-05-13 W.A.CANTARA,F.V.MURPHY IV,J.L.SPEARS,H.DEMIRCI,P.F.AGRIS TRANSLATION INITIATION, 5-FORMYLCYTIDINE, RIBOSOME-ANTIBIOTIC COMPLEX 3.20 THERMUS THERMOPHILUS,SYNTHETIC,SYNTHETIC 3TS0 MOUSE LIN28A IN COMPLEX WITH LET-7F-1 MICRORNA PRE-ELEMENT X-RAY DIFFRACTION 11-16-11 Y.NAM,P.SLIZ MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC ZINC KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX 2.76 synthetic 1CX0 HEPATITIS DELTA VIRUS RIBOZYME X-RAY DIFFRACTION 9-08-99 A.R.FERRE-D'AMARE,K.ZHOU,J.A.DOUDNA NESTED DOUBLE PSEUDOKNOT RNA STRUCTURE, RNA BINDING PROTEIN/RNA COMPLEX 2.30 HEPATITIS DELTA VIRUS 3P4D ALTERNATINGLY MODIFIED 2'FLUORO RNA OCTAMER F/RC4G4 X-RAY DIFFRACTION 1-05-11 P.S.PALLAN,E.M.GREENE,P.A.JICMAN,R.K.PANDEY,M.MANOHARAN,E.ROZNERS, M.EGLI RNA, 2'-FLUORO-RNA, O2'-MODIFICATION, OCTAMER, 2'-FLUORO 2'- DEOXYCYTIDINE, 2'-FLUORO 2'-DEOXYGUANOSINE, SIRNA 1.85 synthetic 3HXM STRUCTURE OF AN ARGONAUTE COMPLEXED WITH GUIDE DNA AND TARGET RNA DUPLEX CONTAINING TWO MISMATCHES. X-RAY DIFFRACTION 10-06-09 Y.WANG,H.LI,G.SHENG,D.J.PATEL ARGONAUTE, PROTEIN-DNA-RNA COMPLEX, PLASMID, NUCLEIC ACID BINDING PROTEIN/DNA/RNA COMPLEX 3.10 synthetic 3CF5 THIOPEPTIDE ANTIBIOTIC THIOSTREPTON BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS X-RAY DIFFRACTION 6-17-08 J.M.HARMS,D.N.WILSON,F.SCHLUENZEN,S.R.CONNELL,T.STACHELHAUS, Z.ZABOROWSKA,C.M.T.SPAHN,P.FUCINI RIBOSOME, RIBOSOMAL SUBUNIT, 50S, THIOPEPTIDE ANTIBIOTICS, COMPLEX, TRANSLATIONAL REGULATION, L11, MOLECULAR SWITCH, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, TRNA-BINDING, METHYLATION, METAL-BINDING, ZINC, ZINC-FINGER 3.30 DEINOCOCCUS RADIODURANS 3SJ2 A CRYSTAL STRUCTURE OF A MODEL OF THE REPEATING R(CGG) TRANSCRIPT FOUND IN FRAGILE X SYNDROME X-RAY DIFFRACTION 8-03-11 A.KUMAR,F.PENGFEI,H.PARK,K.NETTLES,M.GUO,M.D.DISNEY TRINUCLEOTIDE DISORDERS, FRAGILE X-SYNDROME, RNA 1.36 synthetic,synthetic 4BYO CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX ELECTRON MICROSCOPY 11-20-13 I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, S.H.W.SCHERES RIBOSOME, RIBOSOME INITIATION COMPLEX, INITIATOR FACTOR EIF5B, CRYO EM, SINGLE PARTICLE ANALYSIS 4.30 SACCHAROMYCES CEREVISIAE 2QBK CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH GENTAMICIN AND RRF BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 4.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3HAY CRYSTAL STRUCTURE OF A SUBSTRATE-BOUND FULL H/ACA RNP FROM PYROCOCCUS FURIOSUS X-RAY DIFFRACTION 6-23-09 K.YE H/ACA, GUIDE RNA, RNA-PROTEIN COMPLEX, PSEUDOURIDINE SYNTHASE, ISOMERASE, TRNA PROCESSING, RIBONUCLEOPROTEIN, RIBOSOME BIOGENESIS, RRNA PROCESSING, RIBOSOMAL PROTEIN, RNA-BINDING, ISOMERASE/BIOSYNTHETIC PROTEIN/RNA COMPLEX 4.99 synthetic,synthetic 1Y90 HIV-1 DIS(MAL) DUPLEX MN-SOAKED X-RAY DIFFRACTION 12-21-04 E.ENNIFAR,P.WALTER,P.DUMAS HIV-1, RNA, METAL IONS, BULGE 3.08 synthetic 2W89 CRYSTAL STRUCTURE OF THE E.COLI TRNAARG AMINOACYL STEM ISSOACCEPTOR RR-1660 AT 2.0 ANGSTROEM RESOLUTION X-RAY DIFFRACTION 11-17-09 A.EICHERT,A.SCHREIBER,J.P.FUERSTE,M.PERBANDT,C.BETZEL, V.A.ERDMANN,C.FOERSTER TRNA ACCEPTOR STEM, RNA, TRNAARG, HYDRATION, TRNA IDENTITY 2.00 ESCHERICHIA COLI,ESCHERICHIA COLI 3D2G STRUCTURAL BASIS OF THIAMINE PYROPHOSPHATE ANALOGUES BINDING TO THE EUKARYOTIC RIBOSWITCH X-RAY DIFFRACTION 7-01-08 S.THORE RNA, RIBOSWITCH, TPP, THIAMINE ANALOGUES, ANTIBIOTICS, ARABIDOPSIS THALIANA, EUKARYOTE, STRUCTURE 2.25 ARABIDOPSIS THALIANA 2RSK RNA APTAMER AGAINST PRION PROTEIN IN COMPLEX WITH THE PARTIAL BINDING PEPTIDE SOLUTION NMR 2-13-13 T.MASHIMA,F.NISHIKAWA,Y.O.KAMATARI,H.FUJIWARA,S.NISHIKAWA,K.KUWATA, M.KATAHIRA APTAMER, PRION, RNA, ALZHEIMER'S DISEASE, MEMBRANE PROTEIN-RNA COMPLEX synthetic 2GJW RNA RECOGNITION AND CLEAVAGE BY AN SPLICING ENDONUCLEASE X-RAY DIFFRACTION 9-12-06 S.XUE,K.CALVIN,H.LI BULGE-HELIX-BULGE RNA-PROTEIN COMPLEX, SPLICING ENDONUCLEASE AF, HYDROLASE/RNA COMPLEX 2.85 synthetic,synthetic,synthetic 3CCU STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482C X-RAY DIFFRACTION 5-20-08 G.BLAHA,G.GUREL G2482C MUTATION, 23S RRNA, LARGE RIBOSOMAL SUBUNIT, RIBOSOME 2.80 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1Y99 HIV-1 SUBTYPE A DIS RNA DUPLEX X-RAY DIFFRACTION 12-21-04 E.ENNIFAR,M.YUSUPOV,P.WALTER,R.MARQUET,B.EHRESMANN, C.EHRESMANN,P.DUMAS HIV-1, RNA, BULGE, MAGNESIUM 2.40 synthetic 4JI8 CRYSTAL STRUCTURE OF 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS X-RAY DIFFRACTION 11-06-13 H.DEMIRCI,L.WANG,F.MURPHY IV,E.MURPHY,J.CARR,S.BLANCHARD,G.JOGL, A.E.DAHLBERG,S.T.GREGORY S RIBOSOMAL SUBUNIT, RIBOSOME, STREPTOMYCIN, RNA STRUCTURE, THERMUS THERMOPHILUS, ANTIBIOTIC RESISTANCE, DECODING, RIBOSOME-ANTIBIOTIC COMPLEX 3.74 THERMUS THERMOPHILUS 2CJK STRUCTURE OF THE RNA BINDING DOMAIN OF HRP1 IN COMPLEX WITH RNA SOLUTION NMR 6-28-06 J.M.PEREZ-CANADILLAS HRP1, RNA-BINDING, RNA PROCESSING, MRNA PROCESSING, NONSENSE-MEDIATED MRNA DECAY, CLEAVAGE, POLYADENYLATION, NUCLEAR PROTEIN, RNA-BINDING PROTEIN SACCHAROMYCES CEREVISIAE 2PLY STRUCTURE OF THE MRNA BINDING FRAGMENT OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA. X-RAY DIFFRACTION 11-06-07 N.SOLER,D.FOURMY,S.YOSHIZAWA PROTEIN-RNA, COMPLEX, RNA, WINGED HELIX, SELB, SECIS, TRANSLATION/RNA COMPLEX 2.60 MOORELLA THERMOACETICA 2FCZ HIV-1 DIS KISSING-LOOP IN COMPLEX WITH RIBOSTAMYCIN X-RAY DIFFRACTION 5-16-06 E.ENNIFAR,J.C.PAILLART,R.MARQUET,P.DUMAS HIV-1, RNA, AMINOGLYCOSIDE, ANTIBIOTICS 2.01 synthetic 3I1P CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, ACETYLATION, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA- BINDING, METHYLATION, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, TRNA-BINDING, PHOSPHOPROTEIN 3.19 ESCHERICHIA COLI K-12,ESCHERICHIA COLI K-12 2M24 NMR SOLUTION STRUCTURE OF THE D3'-HAIRPIN INCLUDING THE EXON BINDING SITE 1 (EBS1) OF THE GROUP II INTRON SC.AI5GAMMA SOLUTION NMR 12-18-13 D.KRUSCHEL,M.SKILANDAT,R.K.O.SIGEL GROUP II INTRON, RIBOZYME, SPLICING, EBS1, HAIRPIN, RNA SACCHAROMYCES CEREVISIAE 2YJY A SPECIFIC AND MODULAR BINDING CODE FOR CYTOSINE RECOGNITION IN PUF DOMAINS X-RAY DIFFRACTION 6-08-11 S.DONG,Y.WANG,C.CASSIDY-AMSTUTZ,G.LU,C.QIU,R.BIGLER,M.JEZYK,C.LI, T.M.T.HALL,Z.WANG RNA BINDING PROTEIN-RNA COMPLEX, NANOS RESPONSE ELEMENT 2.60 UNCLASSIFIED 1HQ1 STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE X-RAY DIFFRACTION 1-03-01 R.T.BATEY,M.B.SAGAR,J.A.DOUDNA PROTEIN-RNA COMPLEX, DOUBLE HELIX, TETRALOOP, INTERNAL LOOP, SIGNAL RECOGNITION PARTICLE, SRP, RIBONUCLEOPROTEIN, SIGNALING PROTEIN/RNA COMPLEX 1.52 synthetic 1IE2 SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY RBD12 OF HAMSTER NUCLEOLIN.SNRE (ANTI) SOLUTION NMR 6-20-01 P.BOUVET,F.H.-T.ALLAIN,L.D.FINGER,T.DIECKMANN,J.FEIGON EUCARYOTIC LOOP E MOTIF A FORM RNA FLEXIBLE LOOPS synthetic 2RD2 GLUTAMINYL-TRNA SYNTHETASE MUTANT C229R WITH BOUND ANALOG 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE X-RAY DIFFRACTION 1-15-08 T.L.BULLOCK,J.J.PERONA PROTEIN-RNA COMPLEX, AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, CYTOPLASM, LIGASE, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, LIGASE/RNA COMPLEX 2.60 ESCHERICHIA COLI K12 4KDJ S RIBOSOME TRANSLOCATION INTERMEDIATE FA-4.2A CONTAINING ELONGATION FACTOR EFG/FUSIDIC ACID/GDP, MRNA, AND TRNA BOUND IN THE PE*/E STATE. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT B. THE 50S SUBUNIT B CAN BE FOUND IN 4KDK. MOLECULE A IN THE SAME ASYMMETRIC UNIT IS DEPOSITED AS 4KDG (30S) AND 4KDH (50S). X-RAY DIFFRACTION 7-03-13 J.ZHOU,L.LANCASTER,J.P.DONOHUE,H.F.NOLLER FUSIDIC ACID GDP, CHIMERIC HYBRID STATE RIBOSOME, RIBOSOME, TRANSLOCATION INTERMEDIATE, EF-G, MRNA, TRNA 4.00 THERMUS THERMOPHILUS,ESCHERICHIA COLI,THERMUS THERMOPHILUS 1M5O TRANSITION STATE STABILIZATION BY A CATALYTIC RNA X-RAY DIFFRACTION 10-12-02 P.B.RUPERT,A.P.MASSEY,S.T.SIGURDSSON,A.R.FERRE-D'AMARE HAIRPIN RIBOZYME, CATALYTIC RNA, U1A RNA BINDING PROTEIN, VANDATE, TRANSITION STATE MIMIC, TRANSLATION/RNA COMPLEX 2.20 synthetic,synthetic 3RKF CRYSTAL STRUCTURE OF GUANINE RIBOSWITCH C61U/G37A DOUBLE MUTANT BOUND TO THIO-GUANINE X-RAY DIFFRACTION 8-17-11 J.BUCK,A.WACKER,E.WARKENTIN,J.WOEHNERT,J.WIRMER-BARTOSCHEK,H.SCHWALBE THREE-WAY JUNCTION, RIBOSWITCH, M-RNA, THIOGUANINE, RNA 2.50 synthetic 4KJI NOVEL RE-ARRANGEMENT OF AN RSMA/CSRA FAMILY PROTEIN TO CREATE A STRUCTURALLY DISTINCT NEW RNA-BINDING FAMILY MEMBER X-RAY DIFFRACTION 9-04-13 C.LI PROTEIN-RNA COMPLEX, BETA BARREL, BETA-BARREL, POST-TRANSCRIPTIONAL REGULATION, RNA BINDING, RNA BINDING PROTEIN-RNA COMPLEX 3.20 synthetic 2UU9 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN. X-RAY DIFFRACTION 5-15-07 A.WEIXLBAUMER,F.V.MURPHY,A.DZIERGOWSKA,A.MALKIEWICZ, F.A.P.VENDEIX,P.F.AGRIS,V.RAMAKRISHNAN TRNA-BINDING, RRNA-BINDING, METAL-BINDING, ZINC-FINGER, TRANSLATION, COILED COIL, PAROMOMYCIN, TRNA, ZINC, MRNA, CMO5U, RIBOSOME, RNA-BINDING, MODIFIACTIONS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN 3.1 THERMUS THERMOPHILUS,synthetic,synthetic 1PN7 COORDINATES OF S12, L11 PROTEINS AND P-TRNA, FROM THE 70S X- RAY STRUCTURE ALIGNED TO THE 70S CRYO-EM MAP OF E.COLI RIBOSOME ELECTRON MICROSCOPY 7-15-03 M.VALLE,A.ZAVIALOV,J.SENGUPTA,U.RAWAT,M.EHRENBERG,J.FRANK RIBOSOMAL PROTEIN, TRNA BINDING PROTEIN, TRNA, RNA BINDING PROTEIN/RNA COMPLEX 10.80 synthetic 4ARC TERNARY COMPLEX OF E. COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND LEUCINE IN THE EDITING CONFORMATION X-RAY DIFFRACTION 6-13-12 A.PALENCIA,T.CREPIN,M.T.VU,T.L.LINCECUM JR,S.A.MARTINIS,S.CUSACK LIGASE-RNA COMPLEX, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, CLASS I AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, METAL-BINDING 2.00 ESCHERICHIA COLI 3OI5 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH TELITHROMYCIN. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES. X-RAY DIFFRACTION 10-20-10 D.P.BULKLEY,C.A.INNIS,G.BLAHA,T.A.STEITZ RIBOSOME, PROTEIN SYNTHESIS, TELITHROMYCIN, RIBOSOME-ANTIBIOTIC COMPLEX 3.10 THERMUS THERMOPHILUS,THERMUS THERMOPHILUS 1VBY CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, AND MN2+ BOUND X-RAY DIFFRACTION 5-18-04 A.KE,K.ZHOU,F.DING,J.H.D.CATE,J.A.DOUDNA HDV, RIBOZYME, RNA, U1A, PRECURSOR, TRANSLATION/RNA COMPLEX 2.90 synthetic 3CZ3 CRYSTAL STRUCTURE OF TOMATO ASPERMY VIRUS 2B IN COMPLEX WITH SIRNA X-RAY DIFFRACTION 5-05-09 J.B.MA,F.LI,S.W.DING,D.J.PATEL PROTEIN-DSRNA COMPLEX, COILED COIL, NUCLEUS, SUPPRESSOR OF RNA SILENCING, VIRAL PROTEIN/RNA COMPLEX 3.23 synthetic,TOMATO ASPERMY VIRUS 3HVR CRYSTAL STRUCTURE OF T. THERMOPHILUS ARGONAUTE COMPLEXED WITH DNA GUIDE STRAND AND 19-NT RNA TARGET STRAND WITH TWO MG2+ AT THE CLEAVAGE SITE X-RAY DIFFRACTION 10-06-09 Y.WANG,H.LI,G.SHENG,D.J.PATEL ARGONAUTE, PROTEIN-DNA-RNA COMPLEX, PLASMID, NUCLEIC ACID BINDING PROTEIN/DNA/RNA COMPLEX 3.21 synthetic 3I21 CRYSTAL STRUCTURE OF THE E. COLI 70S RIBOSOME IN AN INTERMEDIATE STATE OF RATCHETING X-RAY DIFFRACTION 9-01-09 W.ZHANG,J.A.DUNKLE,J.H.D.CATE RIBOSOME STRUCTURE, PROTEIN-RNA COMPLEX, RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, RNA-BINDING, RRNA-BINDING, ANTIBIOTIC RESISTANCE, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION TERMINATION, TRANSLATION REGULATION, ACETYLATION, TRNA-BINDING, METHYLATION, ENDONUCLEASE, HYDROLASE, NUCLEASE 3.71 ESCHERICHIA COLI,synthetic,synthetic 1ZBI BACILLUS HALODURANS RNASE H CATALYTIC DOMAIN MUTANT D132N IN COMPLEX WITH 12-MER RNA/DNA HYBRID X-RAY DIFFRACTION 7-12-05 M.NOWOTNY,S.A.GAIDAMAKOV,R.J.CROUCH,W.YANG RNASE H, RNA/DNA HYBRID, DDE MOTIF, HYDROLASE/RNA/DNA COMPLEX 1.85 synthetic 1FNX SOLUTION STRUCTURE OF THE HUC RBD1-RBD2 COMPLEXED WITH THE AU-RICH ELEMENT SOLUTION NMR 6-24-03 M.INOUE,M.HIRAO,K.KASASHIMA,I.-S.KIM,G.KAWAI,T.KIGAWA, H.SAKAMOTO,Y.MUTO,S.YOKOYAMA RNA-BINDING DOMAIN, PROTEIN-RNA COMPLEX, IMMUNE SYSTEM/RNA COMPLEX MUS MUSCULUS 3S2H RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA CONTAINING A 2[PRIME]-IODO ATP X-RAY DIFFRACTION 8-17-11 X.LIU,D.A.BUSHNELL,D.A.SILVA,X.HUANG,R.D.KORNBERG RNA POLYMERASE II, INITIATION COMPLEX, TRANSCRIPTION-RNA-DNA COMPLEX 3.30 synthetic 1VOQ CRYSTAL STRUCTURE OF FIVE 70S RIBOSOMES FROM ESCHERICHIA COLI IN COMPLEX WITH PROTEIN Y. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS FIVE 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 11-16-04 A.VILA-SANJURJO,B.S.SCHUWIRTH,C.W.HAU,J.H.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 11.50 ESCHERICHIA COLI 2JPP STRUCTURAL BASIS OF RSMA/CSRA RNA RECOGNITION: STRUCTURE OF RSME BOUND TO THE SHINE-DALGARNO SEQUENCE OF HCNA MRNA SOLUTION NMR 8-21-07 M.SCHUBERT,K.LAPOUGE,O.DUSS,F.C.OBERSTRASS,I.JELESAROV, D.HAAS,F.H.-T.ALLAIN RNA RECOGNITION, PROTEIN/RNA, CSRA, RSMA, SHINE-DALGARNO, TRANSLATION/RNA COMPLEX PSEUDOMONAS FLUORESCENS 2JRG NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA- VAL3 WITH 2 MODIFICATIONS (CMO5U34 M6A37) SOLUTION NMR 7-24-07 F.A.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM,B.SPROAT, A.MALKIEWICZ,P.F.AGRIS E.COLI, VALINE, TRNA, ANTICODON STEM LOOP, TRNA DOMAIN, RNA HAIRPIN, URIDINE 5-OXYACETIC ACID, CMO5U, N6- METHYLADENOSINE, M6A synthetic 4A3M RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 4NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP X-RAY DIFFRACTION 12-07-11 A.C.M.CHEUNG,S.SAINSBURY,P.CRAMER TRANSCRIPTION, TRANSCRIPTION INITIATION 3.90 SACCHAROMYCES CEREVISIAE 3S4P CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOMAL DECODING SITE COMPLEXED WITH AN AMPHIPHILIC PAROMOMYCIN O2''-ETHER ANALOGUE X-RAY DIFFRACTION 9-21-11 J.SZYCHOWSKI,J.KONDO,O.ZAHR,K.AUCLAIR,E.WESTHOF,S.HANESSIAN, J.W.KEILLOR AMINOGLYCOSIDE, ANTIBIOTICS, RIBOSOME, DECODING SITE, RNA, RNA- ANTIBIOTIC COMPLEX 2.56 synthetic 3AEV CRYSTAL STRUCTURE OF A/EIF2ALPHA-ADIM2P-RRNA COMPLEX FROM PYROCOCCUS HORIKOSHII OT3 X-RAY DIFFRACTION 4-21-10 M.TANOKURA,M.Z.JIA,K.NAGATA PROTEINS-RRNA COMPLEX, 16S RRNA, RNA-BINDING, RNA PROCESSING, INITIATION FACTOR, PROTEIN BIOSYNTHESIS, TRANSLATION-RNA BINDING PROTEIN-RNA COMPLEX 2.80 synthetic 3DG5 COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-BOUND TERMINATION COMPLEX ELECTRON MICROSCOPY 2-03-09 H.GAO,J.LEBARRON,J.FRANK RIBOSOME, TERMINATION, RATCHET MOTION 15.50 ESCHERICHIA COLI,ESCHERICHIA COLI 2KOC NMR SOLUTION STRUCTURE OF A 14-MER HAIRPIN RNA WITH CUUCGG TETRALOOP SOLUTION NMR 12-01-09 S.NOZINOVIC,B.FUERTIG,H.R.A.JONKER,C.RICHTER,H.SCHWALBE RNA, UUCG TETRALOOP, 14-MER HAIRPIN synthetic 3UZ7 CRYSTAL STRUCTURE ANALYSIS OF RIBOSOMAL DECODING. THIS ENTRY CONTAINS THE 30S RIBOSOMAL SUBUNIT OF THE SECOND 70S MOLECULE IN THE ASYMMETRIC UNIT FOR THE COGNATE TRNA-TYR COMPLEX. X-RAY DIFFRACTION 3-21-12 L.JENNER,N.DEMESHKINA,M.YUSUPOV,G.YUSUPOVA RNA, RIBOSOME, TRNA, TRANSLATION, MRNA 3.00 THERMUS THERMOPHILUS,synthetic,ESCHERICHIA COLI,synthetic 3DH3 CRYSTAL STRUCTURE OF RLUF IN COMPLEX WITH A 22 NUCLEOTIDE RNA SUBSTRATE X-RAY DIFFRACTION 4-28-09 A.ALIAN,A.DEGIOVANNI,R.M.STROUD,J.S.FINER-MOORE PROTEIN-RNA COMPLEX, S4 DOMAIN, ALPHA/BETA PROTEIN, ISOMERASE, RNA-BINDING, RRNA PROCESSING, ISOMERASE/RNA COMPLEX 3.00 synthetic 1PNS CRYSTAL STRUCTURE OF A STREPTOMYCIN DEPENDENT RIBOSOME FROM E. COLI, 30S SUBUNIT OF 70S RIBOSOME. THIS FILE, 1PNS, CONTAINS THE 30S SUBUNIT, TWO TRNAS, AND ONE MRNA MOLECULE. THE 50S RIBOSOMAL SUBUNIT IS IN FILE 1PNU. X-RAY DIFFRACTION 7-15-03 A.VILA-SANJURJO,W.K.RIDGEWAY,V.SEYMANER,W.ZHANG,S.SANTOSO, K.YU,J.H.D.CATE S RIBOSOMAL SUBUNIT, PROTEIN-RNA COMPLEX, PROTEIN-PROTEIN COMPLEX, RNA-RNA COMPLEX, RIBOSOME 8.70 ESCHERICHIA COLI,ESCHERICHIA COLI,synthetic 2YH1 MODEL OF HUMAN U2AF65 TANDEM RRM1 AND RRM2 DOMAINS WITH EIGHT-SITE URIDINE BINDING SOLUTION NMR 7-20-11 C.D.MACKERETH,T.MADL,B.SIMON,K.ZANIER,A.GASCH,M.SATTLER TRANSCRIPTION, PRE-MRNA SPLICING HOMO SAPIENS 2X2Q CRYSTAL STRUCTURE OF AN 'ALL LOCKED' LNA DUPLEX AT 1.9 ANGSTROM RESOLUTION X-RAY DIFFRACTION 2-16-11 A.EICHERT,K.BEHLING,J.P.FUERSTE,C.BETZEL,V.A.ERDMANN, C.FOERSTER DNA, MODIFIED NUCLEIC ACID, LOCKED NUCLEIC ACID, THERMOSTABILITY 1.90 SYNTHETIC CONSTRUCT,SYNTHETIC CONSTRUCT 2G8V B. HALODURANS RNASE H CATALYTIC DOMAIN E188A MUTANT IN COMPLEX WITH MG2+ AND RNA/DNA HYBRID (REACTION PRODUCT) X-RAY DIFFRACTION 4-25-06 M.NOWOTNY,W.YANG RNASE H, RIBONUCLEASE H, RNA/DNA HYBRID, HYDROLASE/RNA/DNA COMPLEX 1.85 synthetic 2QBC CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME, WITH GENTAMICIN BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400. X-RAY DIFFRACTION 9-25-07 M.A.BOROVINSKAYA,R.D.PAI,W.ZHANG,B.-S.SCHUWIRTH,J.M.HOLTON, G.HIROKAWA,H.KAJI,A.KAJI,J.H.D.CATE RNA-PROTEIN COMPLEX, RIBOSOME 3.54 ESCHERICHIA COLI,ESCHERICHIA COLI 3DIY CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE, MN2+ SOAK X-RAY DIFFRACTION 9-16-08 A.A.SERGANOV RIBOSWITCH, LYSINE, RNA 2.71 synthetic 1YJN CRYSTAL STRUCTURE OF CLINDAMYCIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI X-RAY DIFFRACTION 4-26-05 D.TU,G.BLAHA,P.B.MOORE,T.A.STEITZ CLINDAMYCIN, ANTIBIOTIC COMPLEXES, MUTATED 50S SUBUNITS, RIBOSOME 3.00 HALOARCULA MARISMORTUI,HALOARCULA MARISMORTUI 1AQO IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES SOLUTION NMR 2-04-98 K.J.ADDESS,A.PARDI RIBONUCLEIC ACID, RNA, HAIRPIN, TRANSLATIONAL REGULATION synthetic