Query 50dcfcf045337 run time not recorded
Unaligned nucleotides are translucent. Right click to view Jmol menu. More HelpQuery summary
- Molecule 1
- PDB id: 2QBG, Chains: A, Nucleotides: all
- Molecule 2
- PDB id: 2ZJR, Chains: Y, Nucleotides: all
- Iteration 1
- d = 0.4, p = 7, β = 30
Local geometric similarity
Blue (low geometric discrepancy) indicates high 3D similarity.
Red (high geometric discrepancy) indicates low 3D similarity.
Bar Diagram Help
The arcs indicate basepairing interactions and are colored by type.
Bar Diagram Help
Basepair interactions are annotated according to the
Leontis-Westhof nomenclature and are colored by type.
Basepair Table Help
<0.1 | <0.2 | <0.3 | <0.4 | <0.5 | <0.6 | <0.7 | <0.8 | <0.9 | <1.0 | >=1.0 |
2QBG | 2ZJR | Disc | ||||
---|---|---|---|---|---|---|
--- | --- | Y:C2 | --- | |||
--- | --- | Y:A3 | cWW | Y:U122 | ||
A:G2 | cWW | A:C118 | Y:C4 | cWW | Y:G121 | |
A:C3 | cWW | A:G117 | Y:C5 | cWW | Y:G120 | |
A:C4 | cWW | A:G116 | Y:C6 | cWW | Y:G119 | |
A:U5 | cWW | A:A115 | Y:C7 | cWW | Y:G118 | |
A:G6 | cWW | A:C114 | Y:C8 | cWW | Y:G117 | |
A:G7 | cWW | A:C113 | Y:G9 | cWW | Y:C116 | |
A:C8 | cWW | A:G112 | Y:U10 | cWW | Y:G115 | |
A:G9 | cWW | A:U111 | Y:G11 | cWW | Y:C114 | |
A:G10 | cWW | A:C110 | Y:C12 | cWW | Y:G113 | |
A:C11 | cWW | A:A109 | Y:C13 | ncSW | Y:A112 | |
--- | --- | Y:C14 | --- | |||
A:C12 | --- | --- | --- | |||
A:G13 | A:G69 | Y:A15 | tSS | Y:G71 | ||
A:U14 | --- | Y:U16 | --- | |||
A:A15 | --- | Y:A17 | --- | |||
A:G16 | cWW | A:C68 | Y:G18 | cWW | Y:C70 | |
A:C17 | cWW | A:G67 | Y:C19 | cWW | Y:G69 | |
A:C17 | ntWS | A:A108 | Y:C19 | cHS | Y:C111 | |
A:G18 | cWW | A:U65 | Y:A20 | cWW | Y:C67 | |
A:C19 | cWW | A:G64 | Y:C21 | cWW | Y:G66 | |
A:G20 | cWW | A:C63 | Y:U22 | cWW | Y:A65 | |
A:G21 | cWW | A:C62 | Y:G23 | cWW | Y:C64 | |
A:U22 | cWW | A:G61 | Y:U24 | cWW | Y:A63 | |
A:G23 | cWW | A:C60 | Y:G25 | cWW | Y:C62 | |
A:G24 | tSW | A:C27 | Y:G26 | ntSW | Y:C29 | |
--- | --- | Y:A27 | --- | |||
--- | --- | Y:A28 | --- | |||
A:U25 | --- | --- | --- | |||
A:C26 | --- | --- | --- | |||
A:C27 | tWS | A:G24 | Y:C29 | ntWS | Y:G26 | |
A:C28 | cWW | A:G56 | Y:C30 | cWW | Y:G58 | |
A:A29 | cWW | A:U55 | Y:A31 | cWW | Y:U57 | |
A:C30 | cWW | A:G54 | Y:C32 | cWW | Y:G56 | |
A:C31 | cWW | A:G51 | Y:C33 | cWW | Y:G53 | |
A:C31 | cSW | A:A53 | Y:C33 | ntSH | Y:C55 | |
A:U32 | cWW | A:A50 | Y:C34 | cWW | Y:G52 | |
A:G33 | cWW | A:C49 | Y:C35 | cWW | Y:G51 | |
A:A34 | cWW | A:U48 | Y:A36 | ncWW | Y:U50 | |
--- | --- | Y:C37 | --- | |||
A:C35 | --- | --- | --- | |||
A:C36 | --- | Y:C38 | --- | |||
A:C37 | cWS | A:U48 | Y:C39 | ---- | Y:U50 | |
A:C38 | cWW | A:G44 | Y:C40 | ncWW | Y:G46 | |
A:A39 | cSW | A:A46 | Y:A41 | ncSW | Y:A48 | |
A:U40 | ntSH | A:A45 | Y:U42 | tSH | Y:A47 | |
A:G41 | --- | Y:G43 | --- | |||
A:C42 | --- | Y:C44 | --- | |||
A:C43 | --- | Y:C45 | --- | |||
A:G44 | cWW | A:C38 | Y:G46 | ncWW | Y:C40 | |
A:G44 | tSW | A:C47 | Y:G46 | Y:C49 | ||
A:A45 | ntHS | A:U40 | Y:A47 | tHS | Y:U42 | |
A:A46 | cWS | A:A39 | Y:A48 | ncWS | Y:A41 | |
A:C47 | tWS | A:G44 | Y:C49 | Y:G46 | ||
A:U48 | cWW | A:A34 | Y:U50 | ncWW | Y:A36 | |
A:U48 | cSW | A:C37 | Y:U50 | ---- | Y:C39 | |
A:C49 | cWW | A:G33 | Y:G51 | cWW | Y:C35 | |
A:A50 | cWW | A:U32 | Y:G52 | cWW | Y:C34 | |
A:G51 | cWW | A:C31 | Y:G53 | cWW | Y:C33 | |
A:A52 | --- | Y:U54 | --- | |||
A:A53 | cWS | A:C31 | Y:C55 | ntHS | Y:C33 | |
A:G54 | cWW | A:C30 | Y:G56 | cWW | Y:C32 | |
A:U55 | cWW | A:A29 | Y:U57 | cWW | Y:A31 | |
A:G56 | cWW | A:C28 | Y:G58 | cWW | Y:C30 | |
A:A57 | --- | Y:A59 | --- | |||
A:A58 | --- | Y:A60 | --- | |||
A:A59 | --- | Y:A61 | --- | |||
A:C60 | cWW | A:G23 | Y:C62 | cWW | Y:G25 | |
A:G61 | cWW | A:U22 | Y:A63 | cWW | Y:U24 | |
A:C62 | cWW | A:G21 | Y:C64 | cWW | Y:G23 | |
A:C63 | cWW | A:G20 | Y:A65 | cWW | Y:U22 | |
A:G64 | cWW | A:C19 | Y:G66 | cWW | Y:C21 | |
A:U65 | cWW | A:G18 | Y:C67 | cWW | Y:A20 | |
--- | --- | Y:A68 | --- | |||
A:A66 | --- | --- | --- | |||
A:G67 | cWW | A:C17 | Y:G69 | cWW | Y:C19 | |
A:C68 | cWW | A:G16 | Y:C70 | cWW | Y:G18 | |
A:G69 | tHS | A:G107 | Y:G71 | ncWW | Y:U110 | |
A:G69 | A:G13 | Y:G71 | tSS | Y:A15 | ||
A:C70 | cWW | A:G106 | Y:C72 | cWW | Y:G109 | |
A:C71 | cWW | A:G105 | Y:C73 | cWW | Y:G108 | |
A:G72 | tSH | A:A104 | Y:A74 | tSH | Y:C107 | |
A:A73 | tHW | A:U103 | Y:A75 | tHW | Y:U106 | |
A:U74 | bif | A:G102 | Y:U76 | tHW | Y:G105 | |
A:G75 | --- | Y:G77 | --- | |||
A:G76 | bif | A:G100 | Y:A78 | bif | Y:A103 | |
A:U77 | tWH | A:A99 | Y:U79 | tWH | Y:A102 | |
A:A78 | tHS | A:G98 | Y:A80 | tHS | Y:A101 | |
A:G79 | cWW | A:C97 | Y:C81 | cWW | Y:G100 | |
A:U80 | cWW | A:G96 | Y:U82 | cWW | Y:G99 | |
A:G81 | cWW | A:U95 | Y:C83 | bif | Y:C98 | |
A:U82 | cWW | A:A94 | Y:G84 | cWW | Y:C97 | |
A:G83 | cWW | A:C93 | Y:G85 | cWW | Y:C96 | |
A:G84 | cWW | A:C92 | Y:A86 | cWW | Y:U95 | |
A:G85 | cWW | A:C91 | Y:C87 | cWW | Y:G94 | |
A:G86 | cWW | A:C90 | Y:C88 | cWW | Y:G93 | |
--- | --- | Y:G89 | --- | |||
--- | --- | Y:C90 | --- | |||
--- | --- | Y:A91 | --- | |||
--- | --- | Y:G92 | --- | |||
A:U87 | --- | --- | --- | |||
A:C88 | --- | --- | --- | |||
A:U89 | --- | --- | --- | |||
A:C90 | cWW | A:G86 | Y:G93 | cWW | Y:C88 | |
A:C91 | cWW | A:G85 | Y:G94 | cWW | Y:C87 | |
A:C92 | cWW | A:G84 | Y:U95 | cWW | Y:A86 | |
A:C93 | cWW | A:G83 | Y:C96 | cWW | Y:G85 | |
A:A94 | cWW | A:U82 | Y:C97 | cWW | Y:G84 | |
A:U95 | cWW | A:G81 | Y:C98 | bif | Y:C83 | |
A:G96 | cWW | A:U80 | Y:G99 | cWW | Y:U82 | |
A:C97 | cWW | A:G79 | Y:G100 | cWW | Y:C81 | |
A:G98 | tSH | A:A78 | Y:A101 | tSH | Y:A80 | |
A:A99 | tHW | A:U77 | Y:A102 | tHW | Y:U79 | |
A:G100 | bif | A:G76 | Y:A103 | bif | Y:A78 | |
A:A101 | --- | Y:A104 | --- | |||
A:G102 | bif | A:U74 | Y:G105 | tWH | Y:U76 | |
A:U103 | tWH | A:A73 | Y:U106 | tWH | Y:A75 | |
A:A104 | tHS | A:G72 | Y:C107 | tHS | Y:A74 | |
A:G105 | cWW | A:C71 | Y:G108 | cWW | Y:C73 | |
A:G106 | cWW | A:C70 | Y:G109 | cWW | Y:C72 | |
A:G107 | tSH | A:G69 | Y:U110 | ncWW | Y:G71 | |
A:A108 | ntSW | A:C17 | Y:C111 | cSH | Y:C19 | |
A:A109 | cWW | A:C11 | Y:A112 | ncWS | Y:C13 | |
A:C110 | cWW | A:G10 | Y:G113 | cWW | Y:C12 | |
A:U111 | cWW | A:G9 | Y:C114 | cWW | Y:G11 | |
A:G112 | cWW | A:C8 | Y:G115 | cWW | Y:U10 | |
A:C113 | cWW | A:G7 | Y:C116 | cWW | Y:G9 | |
A:C114 | cWW | A:G6 | Y:G117 | cWW | Y:C8 | |
A:A115 | cWW | A:U5 | Y:G118 | cWW | Y:C7 | |
A:G116 | cWW | A:C4 | Y:G119 | cWW | Y:C6 | |
A:G117 | cWW | A:C3 | Y:G120 | cWW | Y:C5 | |
A:C118 | cWW | A:G2 | Y:G121 | cWW | Y:C4 | |
--- | --- | Y:U122 | cWW | Y:A3 | ||
--- | --- | Y:U123 | --- |
--GCCUGGCGGC-CGUAGCGCGGUGG--UCCCACCUGA-CCCCAUGCCGAACUCAGAAGUGAAACGCCGU-AGCGCCGAU CACCCCCGUGCCC-AUAGCACUGUGGAA--CCACCCCAC-CCCAUGCCGAACUGGGUCGUGAAACACAGCA-GCGCCAAU GGUAGUGUGGGG----UCUCCCCAUGCGAGAGUAGGGAACUGCCAGGC--- GAUACUCGGACCGCAG---GGUCCCGGAAAAGUCGGUCAGCGCGGGGGUU-
Summary statistics
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