Query 50dd041a26253 run time not recorded
Unaligned nucleotides are translucent. Right click to view Jmol menu. More HelpQuery summary
- Molecule 1
- PDB id: 2QBG, Chains: A, Nucleotides: all
- Molecule 2
- PDB id: 1S72, Chains: 9, Nucleotides: all
- Iteration 1
- d = 0.4, p = 2, β = 200
- Iteration 2
- d = 0.4, p = 5, β = 40
- Iteration 3
- d = 0.4, p = 8, β = 10
Local geometric similarity
Blue (low geometric discrepancy) indicates high 3D similarity.
Red (high geometric discrepancy) indicates low 3D similarity.
Bar Diagram Help
The arcs indicate basepairing interactions and are colored by type.
Bar Diagram Help
Basepair interactions are annotated according to the
Leontis-Westhof nomenclature and are colored by type.
Basepair Table Help
<0.1 | <0.2 | <0.3 | <0.4 | <0.5 | <0.6 | <0.7 | <0.8 | <0.9 | <1.0 | >=1.0 |
2QBG | 1S72 | Disc | ||||
---|---|---|---|---|---|---|
A:G2 | cWW | A:C118 | --- | --- | ||
A:C3 | cWW | A:G117 | --- | --- | ||
A:C4 | cWW | A:G116 | --- | --- | ||
A:U5 | cWW | A:A115 | --- | 9:A120 | ||
--- | --- | 9:U1 | --- | |||
--- | --- | 9:U2 | --- | |||
--- | A:G23 | 9:A3 | tSS | 9:G21 | ||
--- | A:C26 | 9:A3 | cHW | 9:G25 | ||
A:G6 | cWW | A:C114 | 9:G4 | cWW | 9:C119 | |
A:G7 | cWW | A:C113 | 9:G5 | cWW | 9:C118 | |
A:C8 | cWW | A:G112 | 9:C6 | cWW | 9:G117 | |
A:G9 | cWW | A:U111 | 9:G7 | cWW | 9:C116 | |
A:G10 | cWW | A:C110 | 9:G8 | cWW | 9:C115 | |
A:C11 | cWW | A:A109 | 9:C9 | cWW | 9:G114 | |
A:C12 | --- | 9:C10 | --- | |||
A:G13 | A:G69 | 9:A11 | tSS | 9:G68 | ||
--- | --- | 9:C12 | --- | |||
--- | --- | 9:A13 | --- | |||
A:U14 | --- | --- | --- | |||
A:A15 | --- | --- | --- | |||
A:G16 | cWW | A:C68 | 9:G14 | cWW | 9:C67 | |
A:C17 | cWW | A:G67 | 9:C15 | cWW | 9:G66 | |
A:G18 | cWW | A:U65 | 9:G16 | --- | ||
A:G18 | --- | 9:G16 | cWW | 9:C64 | ||
A:C19 | cWW | A:G64 | 9:G17 | cWW | 9:C63 | |
A:G20 | cWW | A:C63 | 9:U18 | cWW | 9:A62 | |
A:G21 | cWW | A:C62 | 9:G19 | cWW | 9:C61 | |
A:U22 | cWW | A:G61 | 9:G20 | cWW | 9:C60 | |
A:G23 | cWW | A:C60 | 9:G21 | cWW | 9:C59 | |
A:G23 | --- | 9:G21 | tSS | 9:A3 | ||
A:G24 | tSW | A:C27 | 9:G22 | tSW | 9:C26 | |
--- | --- | 9:U23 | --- | |||
--- | --- | 9:U24 | --- | |||
A:U25 | --- | --- | --- | |||
A:C26 | --- | 9:G25 | cWH | 9:A3 | ||
A:C27 | tWS | A:G24 | 9:C26 | tWS | 9:G22 | |
A:C28 | cWW | A:G56 | 9:C27 | cWW | 9:U55 | |
A:C28 | ---- | A:U55 | 9:C27 | bif | 9:A54 | |
A:A29 | cWW | A:U55 | 9:U28 | cWW | 9:A54 | |
A:A29 | --- | 9:U28 | tSW | 9:A57 | ||
A:C30 | cWW | A:G54 | 9:C29 | cWW | 9:G53 | |
A:C30 | ncSW | A:A57 | 9:C29 | cSW | 9:A56 | |
A:C31 | cWW | A:G51 | 9:C30 | cWW | 9:G50 | |
A:C31 | cSW | A:A53 | 9:C30 | cSW | 9:A52 | |
A:U32 | cWW | A:A50 | 9:C31 | cWW | 9:G49 | |
A:G33 | cWW | A:C49 | 9:G32 | cWW | 9:C48 | |
A:A34 | cWW | A:U48 | 9:U33 | cWW | 9:A47 | |
--- | --- | 9:A34 | --- | |||
A:C35 | --- | --- | --- | |||
A:C36 | --- | 9:C35 | --- | |||
A:C37 | cWS | A:U48 | 9:C36 | cWS | 9:A47 | |
A:C38 | cWW | A:G44 | 9:C37 | cWW | 9:G43 | |
A:A39 | cSW | A:A46 | 9:A38 | cSW | 9:A45 | |
A:U40 | ntSH | A:A45 | 9:U39 | tSH | 9:A44 | |
A:G41 | --- | 9:C40 | --- | |||
A:C42 | --- | 9:C41 | --- | |||
A:C43 | --- | 9:C42 | --- | |||
A:G44 | cWW | A:C38 | 9:G43 | cWW | 9:C37 | |
A:G44 | tSW | A:C47 | 9:G43 | tSW | 9:C46 | |
A:A45 | ntHS | A:U40 | 9:A44 | tHS | 9:U39 | |
A:A46 | cWS | A:A39 | 9:A45 | cWS | 9:A38 | |
A:C47 | tWS | A:G44 | 9:C46 | tWS | 9:G43 | |
A:U48 | cWW | A:A34 | 9:A47 | cWW | 9:U33 | |
A:U48 | cSW | A:C37 | 9:A47 | cSW | 9:C36 | |
A:C49 | cWW | A:G33 | 9:C48 | cWW | 9:G32 | |
A:A50 | cWW | A:U32 | 9:G49 | cWW | 9:C31 | |
A:G51 | cWW | A:C31 | 9:G50 | cWW | 9:C30 | |
--- | A:A53 | 9:A51 | cSH | 9:A52 | ||
--- | A:G54 | 9:A51 | cSH | 9:G53 | ||
A:A52 | --- | --- | --- | |||
A:A53 | cWS | A:C31 | 9:A52 | cWS | 9:C30 | |
A:A53 | --- | 9:A52 | cHS | 9:A51 | ||
A:G54 | cWW | A:C30 | 9:G53 | cWW | 9:C29 | |
A:G54 | --- | 9:G53 | cHS | 9:A51 | ||
A:U55 | cWW | A:A29 | 9:A54 | cWW | 9:U28 | |
A:U55 | ---- | A:C28 | 9:A54 | bif | 9:C27 | |
A:G56 | cWW | A:C28 | 9:U55 | cWW | 9:C27 | |
A:A57 | ncWS | A:C30 | 9:A56 | cWS | 9:C29 | |
--- | A:A29 | 9:A57 | tWS | 9:U28 | ||
A:A58 | --- | --- | --- | |||
A:A59 | --- | 9:G58 | --- | |||
A:C60 | cWW | A:G23 | 9:C59 | cWW | 9:G21 | |
A:G61 | cWW | A:U22 | 9:C60 | cWW | 9:G20 | |
A:C62 | cWW | A:G21 | 9:C61 | cWW | 9:G19 | |
A:C63 | cWW | A:G20 | 9:A62 | cWW | 9:U18 | |
A:G64 | cWW | A:C19 | 9:C63 | cWW | 9:G17 | |
--- | A:G18 | 9:C64 | cWW | 9:G16 | ||
A:U65 | cWW | A:G18 | --- | 9:G16 | ||
A:A66 | --- | 9:A65 | --- | |||
A:G67 | cWW | A:C17 | 9:G66 | cWW | 9:C15 | |
A:C68 | cWW | A:G16 | 9:C67 | cWW | 9:G14 | |
A:G69 | tHS | A:G107 | 9:G68 | ---- | 9:C108 | |
A:G69 | A:G13 | 9:G68 | tSS | 9:A11 | ||
--- | --- | 9:U69 | cWW | 9:U112 | ||
--- | --- | 9:U70 | cWW | 9:U111 | ||
--- | --- | 9:C71 | cWW | 9:G110 | ||
--- | --- | 9:C72 | cWW | 9:G109 | ||
--- | A:G107 | 9:G73 | cWW | 9:C108 | ||
A:C70 | cWW | A:G106 | 9:G74 | cWW | 9:C107 | |
A:C71 | cWW | A:G105 | 9:G75 | cWW | 9:C106 | |
A:G72 | tSH | A:A104 | 9:G76 | tSH | 9:A105 | |
--- | A:G100 | 9:A77 | tHH | 9:A104 | ||
A:A73 | tHW | A:U103 | --- | --- | ||
A:U74 | bif | A:G102 | --- | --- | ||
A:G75 | --- | --- | --- | |||
A:G76 | bif | A:G100 | --- | 9:A104 | ||
--- | A:U77 | 9:G78 | cSH | 9:U79 | ||
A:U77 | tWH | A:A99 | 9:U79 | tWH | 9:A103 | |
A:U77 | --- | 9:U79 | cHS | 9:G78 | ||
A:A78 | tHS | A:G98 | 9:A80 | tHS | 9:G102 | |
A:G79 | cWW | A:C97 | 9:C81 | cWW | 9:G101 | |
A:U80 | cWW | A:G96 | 9:U82 | cWW | 9:G100 | |
A:G81 | cWW | A:U95 | 9:G83 | cWW | 9:U99 | |
A:U82 | cWW | A:A94 | 9:G84 | cWW | 9:C98 | |
A:G83 | cWW | A:C93 | 9:A85 | cWW | 9:U97 | |
A:G84 | cWW | A:C92 | 9:G86 | cWW | 9:C96 | |
--- | --- | 9:U87 | --- | |||
A:G85 | cWW | A:C91 | 9:G88 | cWW | 9:C95 | |
A:G86 | cWW | A:C90 | 9:C89 | cWW | 9:G94 | |
A:U87 | --- | 9:G90 | tSH | 9:A93 | ||
--- | --- | 9:C91 | --- | |||
--- | --- | 9:G92 | --- | |||
A:C88 | --- | --- | --- | |||
A:U89 | --- | --- | --- | |||
--- | A:U87 | 9:A93 | tHS | 9:G90 | ||
A:C90 | cWW | A:G86 | 9:G94 | cWW | 9:C89 | |
A:C91 | cWW | A:G85 | 9:C95 | cWW | 9:G88 | |
A:C92 | cWW | A:G84 | 9:C96 | cWW | 9:G86 | |
A:C93 | cWW | A:G83 | 9:U97 | cWW | 9:A85 | |
A:A94 | cWW | A:U82 | 9:C98 | cWW | 9:G84 | |
A:U95 | cWW | A:G81 | 9:U99 | cWW | 9:G83 | |
A:G96 | cWW | A:U80 | 9:G100 | cWW | 9:U82 | |
A:C97 | cWW | A:G79 | 9:G101 | cWW | 9:C81 | |
A:G98 | tSH | A:A78 | 9:G102 | tSH | 9:A80 | |
A:A99 | tHW | A:U77 | 9:A103 | tHW | 9:U79 | |
A:G100 | bif | A:G76 | 9:A104 | --- | ||
A:G100 | --- | 9:A104 | tHH | 9:A77 | ||
A:A101 | --- | --- | --- | |||
A:G102 | bif | A:U74 | --- | --- | ||
A:U103 | tWH | A:A73 | --- | --- | ||
A:A104 | tHS | A:G72 | 9:A105 | tHS | 9:G76 | |
A:G105 | cWW | A:C71 | 9:C106 | cWW | 9:G75 | |
A:G106 | cWW | A:C70 | 9:C107 | cWW | 9:G74 | |
A:G107 | tSH | A:G69 | 9:C108 | ---- | 9:G68 | |
A:G107 | --- | 9:C108 | cWW | 9:G73 | ||
--- | --- | 9:G109 | cWW | 9:C72 | ||
A:A108 | --- | --- | --- | |||
--- | --- | 9:G110 | cWW | 9:C71 | ||
--- | --- | 9:U111 | cWW | 9:U70 | ||
--- | --- | 9:U112 | cWW | 9:U69 | ||
--- | --- | 9:C113 | --- | |||
A:A109 | cWW | A:C11 | 9:G114 | cWW | 9:C9 | |
A:C110 | cWW | A:G10 | 9:C115 | cWW | 9:G8 | |
A:U111 | cWW | A:G9 | 9:C116 | cWW | 9:G7 | |
A:G112 | cWW | A:C8 | 9:G117 | cWW | 9:C6 | |
A:C113 | cWW | A:G7 | 9:C118 | cWW | 9:G5 | |
A:C114 | cWW | A:G6 | 9:C119 | cWW | 9:G4 | |
A:A115 | cWW | A:U5 | 9:A120 | --- | ||
--- | --- | 9:C121 | --- | |||
--- | --- | 9:C122 | --- | |||
A:G116 | cWW | A:C4 | --- | --- | ||
A:G117 | cWW | A:C3 | --- | --- | ||
A:C118 | cWW | A:G2 | --- | --- |
GCCU---GGCGGCCG--UAGCGCGGUGG--UCCCACCUGA-CCCCAUGCCGAACUCAG-AAGUGA-AACGCCG-UAGCG- ----UUAGGCGGCCACA--GCGGUGGGGUU-GCCUCCCGUA-CCCAUCCCGAACACGGA-AGAUAA-GCCCACC-AGCGU ----CCG--AUGGUAGUGUGG-GGU---CUCCCCAUGCGAGAGUAGGG-----AACUGCCA--GGC- UCCGGGGAG----UACUGGAGUGCGCGA--GCCUCUGGGAA---ACCCGGUUC-GCCGCCACC----
Summary statistics
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