Query 50dd0c152f548 run time not recorded
Unaligned nucleotides are translucent. Right click to view Jmol menu. More HelpQuery summary
- Molecule 1
- PDB id: 2ZJR, Chains: Y, Nucleotides: all
- Molecule 2
- PDB id: 1S72, Chains: 9, Nucleotides: all
- Iteration 1
- d = 0.5, p = 9, β = 60
Local geometric similarity
Blue (low geometric discrepancy) indicates high 3D similarity.
Red (high geometric discrepancy) indicates low 3D similarity.
Bar Diagram Help
The arcs indicate basepairing interactions and are colored by type.
Bar Diagram Help
Basepair interactions are annotated according to the
Leontis-Westhof nomenclature and are colored by type.
Basepair Table Help
<0.1 | <0.2 | <0.3 | <0.4 | <0.5 | <0.6 | <0.7 | <0.8 | <0.9 | <1.0 | >=1.0 |
2ZJR | 1S72 | Disc | ||||
---|---|---|---|---|---|---|
Y:C2 | --- | --- | --- | |||
Y:A3 | cWW | Y:U122 | --- | --- | ||
Y:C4 | cWW | Y:G121 | --- | --- | ||
Y:C5 | cWW | Y:G120 | --- | --- | ||
Y:C6 | cWW | Y:G119 | --- | 9:C121 | ||
Y:C7 | cWW | Y:G118 | --- | 9:A120 | ||
--- | --- | 9:U1 | --- | |||
--- | --- | 9:U2 | --- | |||
--- | Y:G25 | 9:A3 | tSS | 9:G21 | ||
--- | --- | 9:A3 | cHW | 9:G25 | ||
Y:C8 | cWW | Y:G117 | 9:G4 | cWW | 9:C119 | |
Y:G9 | cWW | Y:C116 | 9:G5 | cWW | 9:C118 | |
Y:U10 | cWW | Y:G115 | 9:C6 | cWW | 9:G117 | |
Y:G11 | cWW | Y:C114 | 9:G7 | cWW | 9:C116 | |
Y:C12 | cWW | Y:G113 | 9:G8 | cWW | 9:C115 | |
Y:C13 | ncSW | Y:A112 | 9:C9 | cWW | 9:G114 | |
--- | --- | 9:C10 | --- | |||
Y:C14 | --- | --- | --- | |||
Y:A15 | tSS | Y:G71 | 9:A11 | tSS | 9:G68 | |
--- | --- | 9:C12 | --- | |||
--- | --- | 9:A13 | --- | |||
Y:U16 | --- | --- | --- | |||
Y:A17 | --- | --- | --- | |||
Y:G18 | cWW | Y:C70 | 9:G14 | cWW | 9:C67 | |
Y:C19 | cWW | Y:G69 | 9:C15 | cWW | 9:G66 | |
Y:C19 | cHS | Y:C111 | 9:C15 | ncHW | 9:C113 | |
Y:A20 | cWW | Y:C67 | 9:G16 | cWW | 9:C64 | |
Y:C21 | cWW | Y:G66 | 9:G17 | cWW | 9:C63 | |
Y:U22 | cWW | Y:A65 | 9:U18 | cWW | 9:A62 | |
Y:G23 | cWW | Y:C64 | 9:G19 | cWW | 9:C61 | |
Y:U24 | cWW | Y:A63 | 9:G20 | cWW | 9:C60 | |
Y:G25 | cWW | Y:C62 | 9:G21 | cWW | 9:C59 | |
Y:G25 | --- | 9:G21 | tSS | 9:A3 | ||
Y:G26 | ntSW | Y:C29 | 9:G22 | tSW | 9:C26 | |
--- | --- | 9:U23 | --- | |||
--- | --- | 9:U24 | --- | |||
Y:A27 | --- | --- | --- | |||
Y:A28 | --- | --- | --- | |||
--- | --- | 9:G25 | cWH | 9:A3 | ||
Y:C29 | ntWS | Y:G26 | 9:C26 | tWS | 9:G22 | |
Y:C30 | cWW | Y:G58 | 9:C27 | cWW | 9:U55 | |
Y:C30 | ncWW | Y:U57 | 9:C27 | bif | 9:A54 | |
Y:A31 | cWW | Y:U57 | 9:U28 | cWW | 9:A54 | |
Y:A31 | --- | 9:U28 | tSW | 9:A57 | ||
Y:C32 | cWW | Y:G56 | 9:C29 | cWW | 9:G53 | |
Y:C32 | ncSW | Y:A59 | 9:C29 | cSW | 9:A56 | |
Y:C33 | cWW | Y:G53 | 9:C30 | cWW | 9:G50 | |
Y:C33 | ntSH | Y:C55 | 9:C30 | cSW | 9:A52 | |
Y:C34 | cWW | Y:G52 | 9:C31 | cWW | 9:G49 | |
Y:C35 | cWW | Y:G51 | 9:G32 | cWW | 9:C48 | |
Y:A36 | ncWW | Y:U50 | 9:U33 | cWW | 9:A47 | |
Y:C37 | --- | 9:A34 | --- | |||
Y:C38 | --- | 9:C35 | --- | |||
Y:C39 | ---- | Y:U50 | 9:C36 | cWS | 9:A47 | |
Y:C40 | ncWW | Y:G46 | 9:C37 | cWW | 9:G43 | |
Y:A41 | ncSW | Y:A48 | 9:A38 | cSW | 9:A45 | |
Y:U42 | tSH | Y:A47 | 9:U39 | tSH | 9:A44 | |
Y:G43 | --- | 9:C40 | --- | |||
Y:C44 | --- | 9:C41 | --- | |||
Y:C45 | --- | 9:C42 | --- | |||
Y:G46 | ncWW | Y:C40 | 9:G43 | cWW | 9:C37 | |
Y:G46 | Y:C49 | 9:G43 | tSW | 9:C46 | ||
Y:A47 | tHS | Y:U42 | 9:A44 | tHS | 9:U39 | |
Y:A48 | ncWS | Y:A41 | 9:A45 | cWS | 9:A38 | |
Y:C49 | Y:G46 | 9:C46 | tWS | 9:G43 | ||
Y:U50 | ncWW | Y:A36 | 9:A47 | cWW | 9:U33 | |
Y:U50 | ---- | Y:C39 | 9:A47 | cSW | 9:C36 | |
Y:G51 | cWW | Y:C35 | 9:C48 | cWW | 9:G32 | |
Y:G52 | cWW | Y:C34 | 9:G49 | cWW | 9:C31 | |
Y:G53 | cWW | Y:C33 | 9:G50 | cWW | 9:C30 | |
--- | Y:C55 | 9:A51 | cSH | 9:A52 | ||
--- | Y:G56 | 9:A51 | cSH | 9:G53 | ||
Y:U54 | --- | --- | --- | |||
Y:C55 | ntHS | Y:C33 | 9:A52 | cWS | 9:C30 | |
Y:C55 | --- | 9:A52 | cHS | 9:A51 | ||
Y:G56 | cWW | Y:C32 | 9:G53 | cWW | 9:C29 | |
Y:G56 | --- | 9:G53 | cHS | 9:A51 | ||
Y:U57 | cWW | Y:A31 | 9:A54 | cWW | 9:U28 | |
Y:U57 | ncWW | Y:C30 | 9:A54 | bif | 9:C27 | |
Y:G58 | cWW | Y:C30 | 9:U55 | cWW | 9:C27 | |
Y:A59 | ncWS | Y:C32 | 9:A56 | cWS | 9:C29 | |
--- | Y:A31 | 9:A57 | tWS | 9:U28 | ||
Y:A60 | --- | --- | --- | |||
Y:A61 | --- | 9:G58 | --- | |||
Y:C62 | cWW | Y:G25 | 9:C59 | cWW | 9:G21 | |
Y:A63 | cWW | Y:U24 | 9:C60 | cWW | 9:G20 | |
Y:C64 | cWW | Y:G23 | 9:C61 | cWW | 9:G19 | |
Y:A65 | cWW | Y:U22 | 9:A62 | cWW | 9:U18 | |
Y:G66 | cWW | Y:C21 | 9:C63 | cWW | 9:G17 | |
Y:C67 | cWW | Y:A20 | 9:C64 | cWW | 9:G16 | |
Y:A68 | --- | 9:A65 | --- | |||
Y:G69 | cWW | Y:C19 | 9:G66 | cWW | 9:C15 | |
Y:C70 | cWW | Y:G18 | 9:C67 | cWW | 9:G14 | |
Y:G71 | tSS | Y:A15 | 9:G68 | tSS | 9:A11 | |
Y:C72 | cWW | Y:G109 | 9:U69 | ---- | 9:C107 | |
Y:C72 | ---- | Y:U110 | 9:U69 | cWW | 9:U112 | |
--- | --- | 9:U70 | cWW | 9:U111 | ||
--- | --- | 9:C71 | cWW | 9:G110 | ||
--- | --- | 9:C72 | cWW | 9:G109 | ||
--- | --- | 9:G73 | cWW | 9:C108 | ||
--- | Y:G109 | 9:G74 | cWW | 9:C107 | ||
Y:C73 | cWW | Y:G108 | 9:G75 | cWW | 9:C106 | |
Y:A74 | tSH | Y:C107 | 9:G76 | tSH | 9:A105 | |
--- | Y:A103 | 9:A77 | tHH | 9:A104 | ||
Y:A75 | tHW | Y:U106 | --- | --- | ||
Y:U76 | tHW | Y:G105 | --- | --- | ||
Y:G77 | --- | --- | --- | |||
Y:A78 | bif | Y:A103 | --- | 9:A104 | ||
--- | Y:U79 | 9:G78 | cSH | 9:U79 | ||
Y:U79 | tWH | Y:A102 | 9:U79 | tWH | 9:A103 | |
Y:U79 | --- | 9:U79 | cHS | 9:G78 | ||
Y:A80 | tHS | Y:A101 | 9:A80 | tHS | 9:G102 | |
Y:C81 | cWW | Y:G100 | 9:C81 | cWW | 9:G101 | |
Y:U82 | cWW | Y:G99 | 9:U82 | cWW | 9:G100 | |
Y:C83 | bif | Y:C98 | 9:G83 | cWW | 9:U99 | |
Y:G84 | cWW | Y:C97 | 9:G84 | cWW | 9:C98 | |
Y:G85 | cWW | Y:C96 | 9:A85 | cWW | 9:U97 | |
Y:A86 | cWW | Y:U95 | 9:G86 | cWW | 9:C96 | |
--- | --- | 9:U87 | --- | |||
Y:C87 | cWW | Y:G94 | 9:G88 | cWW | 9:C95 | |
Y:C88 | cWW | Y:G93 | 9:C89 | cWW | 9:G94 | |
Y:G89 | ntSH | Y:G92 | 9:G90 | tSH | 9:A93 | |
Y:C90 | --- | 9:C91 | --- | |||
Y:A91 | --- | 9:G92 | --- | |||
Y:G92 | ntHS | Y:G89 | 9:A93 | tHS | 9:G90 | |
Y:G93 | cWW | Y:C88 | 9:G94 | cWW | 9:C89 | |
Y:G94 | cWW | Y:C87 | 9:C95 | cWW | 9:G88 | |
Y:U95 | cWW | Y:A86 | 9:C96 | cWW | 9:G86 | |
Y:C96 | cWW | Y:G85 | 9:U97 | cWW | 9:A85 | |
Y:C97 | cWW | Y:G84 | 9:C98 | cWW | 9:G84 | |
Y:C98 | bif | Y:C83 | 9:U99 | cWW | 9:G83 | |
Y:G99 | cWW | Y:U82 | 9:G100 | cWW | 9:U82 | |
Y:G100 | cWW | Y:C81 | 9:G101 | cWW | 9:C81 | |
Y:A101 | tSH | Y:A80 | 9:G102 | tSH | 9:A80 | |
Y:A102 | tHW | Y:U79 | 9:A103 | tHW | 9:U79 | |
Y:A103 | bif | Y:A78 | 9:A104 | --- | ||
Y:A103 | --- | 9:A104 | tHH | 9:A77 | ||
Y:A104 | --- | --- | --- | |||
Y:G105 | tWH | Y:U76 | --- | --- | ||
Y:U106 | tWH | Y:A75 | --- | --- | ||
Y:C107 | tHS | Y:A74 | 9:A105 | tHS | 9:G76 | |
Y:G108 | cWW | Y:C73 | 9:C106 | cWW | 9:G75 | |
Y:G109 | cWW | Y:C72 | 9:C107 | ---- | 9:U69 | |
Y:G109 | --- | 9:C107 | cWW | 9:G74 | ||
--- | --- | 9:C108 | cWW | 9:G73 | ||
--- | --- | 9:G109 | cWW | 9:C72 | ||
--- | --- | 9:G110 | cWW | 9:C71 | ||
--- | --- | 9:U111 | cWW | 9:U70 | ||
Y:U110 | ---- | Y:C72 | 9:U112 | cWW | 9:U69 | |
Y:C111 | cSH | Y:C19 | 9:C113 | ncWH | 9:C15 | |
Y:A112 | ncWS | Y:C13 | 9:G114 | cWW | 9:C9 | |
Y:G113 | cWW | Y:C12 | 9:C115 | cWW | 9:G8 | |
Y:C114 | cWW | Y:G11 | 9:C116 | cWW | 9:G7 | |
Y:G115 | cWW | Y:U10 | 9:G117 | cWW | 9:C6 | |
Y:C116 | cWW | Y:G9 | 9:C118 | cWW | 9:G5 | |
Y:G117 | cWW | Y:C8 | 9:C119 | cWW | 9:G4 | |
Y:G118 | cWW | Y:C7 | 9:A120 | --- | ||
Y:G119 | cWW | Y:C6 | 9:C121 | --- | ||
--- | --- | 9:C122 | --- | |||
Y:G120 | cWW | Y:C5 | --- | --- | ||
Y:G121 | cWW | Y:C4 | --- | --- | ||
Y:U122 | cWW | Y:A3 | --- | --- | ||
Y:U123 | --- | --- | --- |
CACCCC---CGUGCC-CA--UAGCACUGUGG---AACCACCCCACCCCAUGCCGAACUGGG-UCGUGA-AACACAGCAGC ------UUAGGCGGCC-ACA--GCGGUGGGGUUG--CCUCCCGUACCCAUCCCGAACACGGA-AGAUAA-GCCCACCAGC GC-----CA--AUGAUACUCGGA-CCGCAGGGUCCCGGAAAAGUCGG----UCAGCGCGGG-GGUU- GUUCCGGGGAG----UACUGGAGUGCGCGAGCCUCUGGGAA---ACCCGGUUCGCCGCCACC-----
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