Query 511bd329acc00 finished in less than a minute
Unaligned nucleotides are translucent. Right click to view Jmol menu. More HelpQuery summary
- Molecule 1
- PDB id: 2ZJR, Chains: Y, Nucleotides: all
- Molecule 2
- PDB id: 3U5H, Chains: 7, Nucleotides: all
- Iteration 1
- d = 0.5, p = 2, β = 100
- Iteration 2
- d = 0.5, p = 8, β = 40
Local geometric similarity
Blue (low geometric discrepancy) indicates high 3D similarity.
Red (high geometric discrepancy) indicates low 3D similarity.
Bar Diagram Help
The arcs indicate basepairing interactions and are colored by type.
Bar Diagram Help
Basepair interactions are annotated according to the
Leontis-Westhof nomenclature and are colored by type.
Basepair Table Help
<0.1 | <0.2 | <0.3 | <0.4 | <0.5 | <0.6 | <0.7 | <0.8 | <0.9 | <1.0 | >=1.0 |
2ZJR | 3U5H | Disc | ||||
---|---|---|---|---|---|---|
Y:C2 | --- | --- | --- | |||
Y:A3 | cWW | Y:U122 | --- | --- | ||
Y:C4 | cWW | Y:G121 | --- | --- | ||
Y:C5 | cWW | Y:G120 | 7:G1 | cWW | 7:C120 | |
Y:C6 | cWW | Y:G119 | 7:G2 | cWW | 7:U119 | |
Y:C6 | --- | 7:G2 | tSS | 7:A23 | ||
Y:C6 | --- | 7:G2 | tSS | 7:A24 | ||
Y:C7 | cWW | Y:G118 | 7:U3 | cWW | 7:A118 | |
Y:C8 | cWW | Y:G117 | 7:U4 | cWW | 7:A117 | |
Y:G9 | cWW | Y:C116 | 7:G5 | cWW | 7:C116 | |
Y:U10 | cWW | Y:G115 | 7:C6 | cWW | 7:G115 | |
Y:G11 | cWW | Y:C114 | 7:G7 | cWW | 7:U114 | |
Y:C12 | cWW | Y:G113 | 7:G8 | cWW | 7:C113 | |
Y:C13 | ncSW | Y:A112 | 7:C9 | cWW | 7:G112 | |
--- | --- | 7:C10 | --- | |||
Y:C14 | --- | --- | --- | |||
Y:A15 | tSS | Y:G71 | 7:A11 | tSS | 7:G67 | |
Y:U16 | --- | 7:U12 | --- | |||
--- | --- | 7:A13 | --- | |||
Y:A17 | --- | --- | --- | |||
Y:G18 | cWW | Y:C70 | 7:U14 | cWW | 7:A66 | |
Y:C19 | cWW | Y:G69 | 7:C15 | cWW | 7:G65 | |
Y:C19 | cHS | Y:C111 | 7:C15 | --- | ||
Y:A20 | cWW | Y:C67 | 7:U16 | cWW | 7:A63 | |
Y:C21 | cWW | Y:G66 | 7:A17 | cWW | 7:U62 | |
Y:U22 | cWW | Y:A65 | 7:C18 | cWW | 7:G61 | |
Y:G23 | cWW | Y:C64 | 7:C19 | cWW | 7:G60 | |
Y:U24 | cWW | Y:A63 | 7:A20 | cWW | 7:U59 | |
Y:G25 | cWW | Y:C62 | 7:G21 | cWW | 7:C58 | |
--- | --- | 7:A22 | --- | |||
--- | Y:C6 | 7:A23 | tSS | 7:G2 | ||
--- | Y:C6 | 7:A24 | tSS | 7:G2 | ||
Y:G26 | --- | --- | --- | |||
Y:A27 | --- | --- | --- | |||
Y:A28 | --- | --- | --- | |||
Y:C29 | --- | 7:G25 | --- | |||
Y:C30 | cWW | Y:G58 | 7:C26 | cWW | 7:U54 | |
Y:A31 | cWW | Y:U57 | 7:A27 | cWW | 7:U53 | |
Y:C32 | cWW | Y:G56 | 7:C28 | cWW | 7:G52 | |
Y:C32 | ncSW | Y:A59 | 7:C28 | cSW | 7:A55 | |
Y:C33 | cWW | Y:G53 | 7:C29 | ---- | 7:U48 | |
Y:C33 | --- | 7:C29 | cWW | 7:G49 | ||
Y:C33 | --- | 7:C29 | cSW | 7:A51 | ||
Y:C34 | cWW | Y:G52 | 7:G30 | cWW | 7:C47 | |
Y:C35 | cWW | Y:G51 | 7:U31 | cWW | 7:A46 | |
Y:A36 | ncWW | Y:U50 | 7:U32 | cWW | 7:A45 | |
Y:C37 | --- | 7:U33 | --- | |||
Y:C38 | --- | 7:C34 | --- | |||
Y:C39 | ---- | Y:U50 | 7:C35 | cWS | 7:A45 | |
Y:C40 | ncWW | Y:G46 | 7:C36 | cWW | 7:G41 | |
Y:A41 | --- | 7:G37 | --- | |||
Y:U42 | tSH | Y:A47 | 7:U38 | tSH | 7:A42 | |
Y:G43 | --- | --- | --- | |||
Y:C44 | --- | 7:C39 | --- | |||
Y:C45 | --- | 7:C40 | --- | |||
Y:G46 | ncWW | Y:C40 | 7:G41 | cWW | 7:C36 | |
Y:G46 | Y:C49 | 7:G41 | tSW | 7:C44 | ||
Y:A47 | tHS | Y:U42 | 7:A42 | tHS | 7:U38 | |
Y:A48 | --- | 7:U43 | --- | |||
Y:C49 | Y:G46 | 7:C44 | tWS | 7:G41 | ||
Y:U50 | ncWW | Y:A36 | 7:A45 | cWW | 7:U32 | |
Y:U50 | ---- | Y:C39 | 7:A45 | cSW | 7:C35 | |
Y:G51 | cWW | Y:C35 | 7:A46 | cWW | 7:U31 | |
Y:G52 | cWW | Y:C34 | 7:C47 | cWW | 7:G30 | |
Y:G53 | cWW | Y:C33 | 7:U48 | ---- | 7:C29 | |
--- | Y:C33 | 7:G49 | cWW | 7:C29 | ||
--- | --- | 7:U50 | --- | |||
Y:U54 | --- | --- | --- | |||
Y:C55 | --- | --- | --- | |||
--- | Y:C33 | 7:A51 | cWS | 7:C29 | ||
Y:G56 | cWW | Y:C32 | 7:G52 | cWW | 7:C28 | |
Y:U57 | cWW | Y:A31 | 7:U53 | cWW | 7:A27 | |
Y:G58 | cWW | Y:C30 | 7:U54 | cWW | 7:C26 | |
Y:A59 | ncWS | Y:C32 | 7:A55 | cWS | 7:C28 | |
Y:A60 | --- | 7:A56 | --- | |||
Y:A61 | --- | 7:G57 | --- | |||
Y:C62 | cWW | Y:G25 | 7:C58 | cWW | 7:G21 | |
Y:A63 | cWW | Y:U24 | 7:U59 | cWW | 7:A20 | |
Y:C64 | cWW | Y:G23 | 7:G60 | cWW | 7:C19 | |
Y:A65 | cWW | Y:U22 | 7:G61 | cWW | 7:C18 | |
Y:G66 | cWW | Y:C21 | 7:U62 | cWW | 7:A17 | |
Y:C67 | cWW | Y:A20 | 7:A63 | cWW | 7:U16 | |
--- | --- | 7:A64 | --- | |||
Y:A68 | --- | --- | --- | |||
Y:G69 | cWW | Y:C19 | 7:G65 | cWW | 7:C15 | |
Y:C70 | cWW | Y:G18 | 7:A66 | cWW | 7:U14 | |
Y:G71 | tSS | Y:A15 | 7:G67 | tSS | 7:A11 | |
Y:G71 | ncWW | Y:U110 | 7:G67 | cWW | 7:U111 | |
Y:C72 | cWW | Y:G109 | 7:C68 | cWW | 7:G110 | |
Y:C73 | cWW | Y:G108 | 7:C69 | cWW | 7:G109 | |
Y:A74 | tSH | Y:C107 | 7:U70 | cWW | 7:A108 | |
--- | Y:U106 | 7:G71 | cWW | 7:C107 | ||
Y:A75 | tHW | Y:U106 | --- | 7:C107 | ||
Y:U76 | tHW | Y:G105 | 7:A72 | cWW | 7:U106 | |
--- | --- | 7:C73 | --- | |||
--- | --- | 7:C74 | --- | |||
Y:G77 | --- | --- | --- | |||
Y:A78 | bif | Y:A103 | --- | 7:A103 | ||
--- | --- | 7:G75 | tSH | 7:A104 | ||
--- | Y:A103 | 7:A76 | tHH | 7:A103 | ||
--- | Y:U79 | 7:G77 | cSH | 7:U78 | ||
Y:U79 | tWH | Y:A102 | 7:U78 | tWH | 7:A102 | |
Y:U79 | --- | 7:U78 | cHS | 7:G77 | ||
Y:A80 | tHS | Y:A101 | 7:A79 | tHS | 7:G101 | |
Y:C81 | cWW | Y:G100 | 7:G80 | cWW | 7:C100 | |
Y:U82 | cWW | Y:G99 | 7:U81 | cWW | 7:G99 | |
Y:C83 | bif | Y:C98 | 7:G82 | cWW | 7:C98 | |
Y:G84 | cWW | Y:C97 | 7:U83 | cWW | 7:A97 | |
Y:G85 | cWW | Y:C96 | 7:A84 | cWW | 7:U96 | |
Y:A86 | cWW | Y:U95 | 7:G85 | cWW | 7:A95 | |
--- | --- | 7:U86 | --- | |||
Y:C87 | cWW | Y:G94 | 7:G87 | cWW | 7:C94 | |
Y:C88 | cWW | Y:G93 | 7:G88 | cWW | 7:C93 | |
Y:G89 | --- | 7:G89 | tSH | 7:A92 | ||
Y:C90 | --- | 7:U90 | --- | |||
Y:A91 | --- | 7:G91 | --- | |||
--- | Y:G89 | 7:A92 | tHS | 7:G89 | ||
Y:G92 | --- | --- | --- | |||
Y:G93 | cWW | Y:C88 | 7:C93 | cWW | 7:G88 | |
Y:G94 | cWW | Y:C87 | 7:C94 | cWW | 7:G87 | |
Y:U95 | cWW | Y:A86 | 7:A95 | cWW | 7:G85 | |
Y:C96 | cWW | Y:G85 | 7:U96 | cWW | 7:A84 | |
Y:C97 | cWW | Y:G84 | 7:A97 | cWW | 7:U83 | |
Y:C98 | bif | Y:C83 | 7:C98 | cWW | 7:G82 | |
Y:G99 | cWW | Y:U82 | 7:G99 | cWW | 7:U81 | |
Y:G100 | cWW | Y:C81 | 7:C100 | cWW | 7:G80 | |
Y:A101 | tSH | Y:A80 | 7:G101 | tSH | 7:A79 | |
Y:A102 | tHW | Y:U79 | 7:A102 | tHW | 7:U78 | |
Y:A103 | bif | Y:A78 | 7:A103 | --- | ||
Y:A103 | --- | 7:A103 | tHH | 7:A76 | ||
--- | --- | 7:A104 | tHS | 7:G75 | ||
--- | --- | 7:C105 | --- | |||
Y:A104 | --- | --- | --- | |||
Y:G105 | tWH | Y:U76 | 7:U106 | cWW | 7:A72 | |
Y:U106 | tWH | Y:A75 | 7:C107 | --- | ||
Y:U106 | --- | 7:C107 | cWW | 7:G71 | ||
Y:C107 | tHS | Y:A74 | 7:A108 | cWW | 7:U70 | |
Y:G108 | cWW | Y:C73 | 7:G109 | cWW | 7:C69 | |
Y:G109 | cWW | Y:C72 | 7:G110 | cWW | 7:C68 | |
Y:U110 | ncWW | Y:G71 | 7:U111 | cWW | 7:G67 | |
Y:C111 | cSH | Y:C19 | --- | 7:C15 | ||
Y:A112 | ncWS | Y:C13 | 7:G112 | cWW | 7:C9 | |
Y:G113 | cWW | Y:C12 | 7:C113 | cWW | 7:G8 | |
Y:C114 | cWW | Y:G11 | 7:U114 | cWW | 7:G7 | |
Y:G115 | cWW | Y:U10 | 7:G115 | cWW | 7:C6 | |
Y:C116 | cWW | Y:G9 | 7:C116 | cWW | 7:G5 | |
Y:G117 | cWW | Y:C8 | 7:A117 | cWW | 7:U4 | |
Y:G118 | cWW | Y:C7 | 7:A118 | cWW | 7:U3 | |
Y:G119 | cWW | Y:C6 | 7:U119 | cWW | 7:G2 | |
Y:G120 | cWW | Y:C5 | 7:C120 | cWW | 7:G1 | |
--- | --- | 7:U121 | --- | |||
Y:G121 | cWW | Y:C4 | --- | --- | ||
Y:U122 | cWW | Y:A3 | --- | --- | ||
Y:U123 | --- | --- | --- |
CACCCCCGUGCC-CAU-AGCACUGUG---GAACCACCCCACCCCAUGCCGAACUGGG---UCGUGAAACACAGC-AGCGC ---GGUUGCGGCC-AUA-UCUACCAGAAA---GCACCGUUUCCCGU-CCGAUCAACUGUA--GUUAAGCUGGUAA-GAGC CA-AU-----GAUACUCGGA-CCGCA-GGGUCCCGGAAA--AGUCGGUCAGCGCGGGG-GUU- CUG-ACCGAG--UAGUGUAGUGGGUGA-CCAUACGCGAAAC-UCAGGU-GCUGCAAUCU----
Summary statistics
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