Query 511bd3759efd6 finished in less than a minute

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Query summary

Molecule 1
PDB id: 3V2F, Chains: B, Nucleotides: all
Molecule 2
PDB id: 3U5H, Chains: 7, Nucleotides: all
Iteration 1
d = 0.5, p = 3, β = 100
Iteration 2
d = 0.5, p = 9, β = 20

Local geometric similarity

Blue (low geometric discrepancy) indicates high 3D similarity. Red (high geometric discrepancy) indicates low 3D similarity. Bar Diagram Help
The arcs indicate basepairing interactions and are colored by type. Bar Diagram Help
Basepair interactions are annotated according to the Leontis-Westhof nomenclature and are colored by type. Basepair Table Help
Discrepancy color legend (low is better)
<0.1 <0.2 <0.3 <0.4 <0.5 <0.6 <0.7 <0.8 <0.9 <1.0 >=1.0
3V2F3U5HDisc
B:U1---------
B:C2cWWB:G119------
B:C3cWWB:G1187:G1cWW7:C120
B:C4cWWB:G1177:G2cWW7:U119
B:C4---7:G2tSS7:A23
B:C4ntSSB:A267:G2tSS7:A24
B:C5cWWB:G1167:U3cWW7:A118
B:C6cWWB:G1157:U4cWW7:A117
B:G7cWWB:C1147:G5cWW7:C116
B:U8cWWB:G1137:C6cWW7:G115
B:G9cWWB:U1127:G7cWW7:U114
B:C10cWWB:G1117:G8cWW7:C113
B:C11cWWB:G1107:C9cWW7:G112
B:C12---7:C10---
B:A13ntSSB:G697:A11tSS7:G67
B:U14---7:U12---
B:A15---7:A13---
B:G16cWWB:C687:U14cWW7:A66
B:C17cWWB:G677:C15cWW7:G65
B:G18cWWB:C657:U16cWW7:A63
B:G19cWWB:C647:A17cWW7:U62
B:C20cWWB:G637:C18cWW7:G61
B:G21cWWB:C627:C19cWW7:G60
B:U22cWWB:G617:A20cWW7:U59
B:G23cWWB:C607:G21cWW7:C58
------7:A22---
B:G24tSWB:C27---7:G25
B:A25---------
---B:C47:A23tSS7:G2
B:A26ntSSB:C47:A24tSS7:G2
B:C27tWSB:G247:G25---
B:C28cWWB:G567:C26cWW7:U54
B:A29cWWB:U557:A27cWW7:U53
B:C30cWWB:G547:C28cWW7:G52
B:C30ncSWB:A577:C28cSW7:A55
B:C31ncWWB:A527:C29cWW7:G49
B:C31---7:C29cSW7:A51
B:C32cWWB:G507:G30cWW7:C47
B:G33cWWB:C497:U31cWW7:A46
B:U34cSHB:C367:U32ncSH7:C34
B:U34cWWB:A487:U32cWW7:A45
B:U35---7:U33---
B:C36cHSB:U347:C34ncHS7:U32
B:C36cWSB:C497:C347:A46
B:C37cWSB:A487:C35cWS7:A45
B:C38cWWB:G447:C36cWW7:G41
B:A39cSWB:A467:G37ntSH7:U43
B:U40ntSHB:A457:U38tSH7:A42
B:U41---------
B:C42---7:C39---
B:C43---7:C40---
B:G44cWWB:C387:G41cWW7:C36
B:G44tSWB:C477:G41tSW7:C44
B:A45ntHSB:U407:A42tHS7:U38
B:A46cWSB:A397:U43ntHS7:G37
B:C47tWSB:G447:C44tWS7:G41
B:A48cWWB:U347:A45cWW7:U32
B:A48cSWB:C377:A45cSW7:C35
B:C49cWWB:G337:A46cWW7:U31
B:C49cSWB:C367:A467:C34
B:G50cWWB:C327:C47cWW7:G30
B:G51---7:U48---
B:A52ncWWB:C317:G49cWW7:C29
------7:U50---
B:A53---------
---B:C317:A51cWS7:C29
B:G54cWWB:C307:G52cWW7:C28
B:U55cWWB:A297:U53cWW7:A27
B:G56cWWB:C287:U54cWW7:C26
B:A57ncWSB:C307:A55cWS7:C28
B:A58---7:A56---
B:A59---7:G57---
B:C60cWWB:G237:C58cWW7:G21
B:G61cWWB:U227:U59cWW7:A20
B:C62cWWB:G217:G60cWW7:C19
B:G63cWWB:C207:G61cWW7:C18
B:C64cWWB:G197:U62cWW7:A17
B:C65cWWB:G187:A63cWW7:U16
------7:A64---
B:A66---------
B:G67cWWB:C177:G65cWW7:C15
B:C68cWWB:G167:A66cWW7:U14
B:G69cWWB:U1087:G67cWW7:U111
B:G69ntSSB:A137:G67tSS7:A11
B:C70cWWB:G1077:C68cWW7:G110
B:C71cWWB:G1067:C69cWW7:G109
B:G72tSHB:A1057:U70---
B:G72---7:U70cWW7:A108
B:A73tHWB:U104---7:C107
B:U74----B:U1047:G71cWW7:C107
B:G75s55B:G1037:A72cWW7:U106
------7:C73---
------7:C74---
B:G76bifB:G101---7:A103
------7:G75tSH7:A104
---B:G1017:A76tHH7:A103
---B:U777:G77cSH7:U78
B:U77tWHB:A1007:U78tWH7:A102
B:U77---7:U78cHS7:G77
B:A78tHSB:G997:A79tHS7:G101
B:C79cWWB:G987:G80cWW7:C100
B:U80cWWB:G977:U81cWW7:G99
B:G81cWWB:U967:G82cWW7:C98
B:G82cWWB:C957:U83cWW7:A97
B:G83cWWB:C947:A84cWW7:U96
B:C84cWWB:G937:G85cWW7:A95
------7:U86---
B:G85cWWB:C927:G87cWW7:C94
B:G86cWWB:C917:G88cWW7:C93
B:G87ntSHB:A907:G89tSH7:A92
B:C88---7:U90---
B:G89---7:G91---
B:A90ntHSB:G877:A92tHS7:G89
B:C91cWWB:G867:C93cWW7:G88
B:C92cWWB:G857:C94cWW7:G87
B:G93cWWB:C847:A95cWW7:G85
B:C94cWWB:G837:U96cWW7:A84
B:C95cWWB:G827:A97cWW7:U83
B:U96cWWB:G817:C98cWW7:G82
B:G97cWWB:U807:G99cWW7:U81
B:G98cWWB:C797:C100cWW7:G80
B:G99tSHB:A787:G101tSH7:A79
B:A100tHWB:U777:A102tHW7:U78
B:G101bifB:G767:A103---
B:G101---7:A103tHH7:A76
------7:A104tHS7:G75
B:A102---7:C105---
B:G103s55B:G757:U106cWW7:A72
B:U104tWHB:A737:C107---
B:U104----B:U747:C107cWW7:G71
---B:G727:A108cWW7:U70
B:A105tHSB:G72---7:U70
B:G106cWWB:C717:G109cWW7:C69
B:G107cWWB:C707:G110cWW7:C68
B:U108cWWB:G697:U111cWW7:G67
B:C109---------
B:G110cWWB:C117:G112cWW7:C9
B:G111cWWB:C107:C113cWW7:G8
B:U112cWWB:G97:U114cWW7:G7
B:G113cWWB:U87:G115cWW7:C6
B:C114cWWB:G77:C116cWW7:G5
B:G115cWWB:C67:A117cWW7:U4
B:G116cWWB:C57:A118cWW7:U3
B:G117cWWB:C47:U119cWW7:G2
B:G118cWWB:C37:C120cWW7:G1
------7:U121---
B:G119cWWB:C2------
B:A120---------
UCCCCCGUGCCCAUAGCGGCGUG--GAACCACCCGUUCCCAUUCCGAACACGGA--AGUGAAACGCGCC-AGCGCCGAUG
--GGUUGCGGCCAUAUCUACCAGAA--AGCACCGUUUCCCGU-CCGAUCAACUGUA-GUUAAGCUGGUAA-GAGCCU-GA

-----GUACUGGGC-GGGCGACCGCCUGGGAG-AGU-AGGUCGGUGCGGGG-GA-
CCGAG-UAGUGUAGUGGGUGACCAUACGCGAAACUCA-GGU-GCUGCAAUCU---

Summary statistics

Summary statistics is not available for this query.