Description:
GNRA Hairpin motifs
Basepair signature:
cWW-tSH-R-R
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.04 | Avg 0.40 | Max 0.99
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 61-21-31-41-51-62-32-42-52-63-43-64-54-65-6
11034V8P0.00000U381G382A383A384A385A386cWWtSH
21024V880.08800U382G383A384A385A386A387cWWntSH
3751RLG0.10590C9G10A11A12A13G14cWWtSH
41044V910.12110U382G383A384A385A386A387cWWntSH
51014W920.12120C82G83A84A85A86G87cWWtSH
61155AN90.12230C3361G3362A3363G3364A3365G3366cWWtSH
7763CUL0.12280C107G108A109A110A111G112cWWtSH
81084R4V0.12450C735G736U737A738A739G740cWWtSH
91094R4V0.12450C735G736U737A738A739G740cWWtSH
101174Y1J0.12550C76G77A78A79A80G81cWWtSH
11414Y1M0.12740U55G56A57A58A59A60cWWtSH
121063UCZ0.12780C31G32A33A34A35G36cWWtSH
131073IWN0.12810C21G22A23A24A25G26cWWntSH
14735B2Q0.12840C35G36A37A38A39G40cWWtSH
151144WZJ0.12860U12G13A14A15A16A17cWWtSH
161134V9F0.13030C804G805A806A807A808G809cWWtSH
17824ENB0.13430U28G29A30A31A32A33cWWtSH
18712OIU0.13510C10G11A12A13A14G15cWWntSH
19704PLX0.13580C24G25A26A27A28G29cWWtSH
20774RUM0.13660C51G52A53A54A55G56cWWtSH
21555J7L0.13820C2658G2659A2660G2661A2662G2663cWWtSH
221053NVI0.13900C9G10A11A12A13G14cWWtSH
23793NMU0.14050C18G19A20A21A22G23cWWtSH
24741G1X0.14120C590G591A592A593A594G649cWWntSH
251203AM10.14140C45G46A47G48A49G50cWWtSH
261213AM10.14140C45G46A47G48A49G50cWWtSH
27424GMA0.14150C119G120A121A122A123G124cWWtSH
281194V9F0.14310C2248G2249G2250G2251A2252G2253cWWtSH
29643NDB0.14350C208G209G210A211A212G213cWWtSH
30685D5L0.14380C8G9A10A11A12G13cWWtSH
31524V880.14700C3025G3026A3027G3028A3029G3030cWWtSH
32694JF20.14800C8G9A10A11A12G13cWWtSH
33722OIU0.14820C10G11A12A13A14G15cWWntSH
34851KH60.14990C28G29A30A31A32G33ntWHcWWtSHncSW
351184Y1M0.15030C24G25A26A27A28G29cWWtSH
361105FDU0.15330C2386G2387A2388A2389A2390G2391cWWtSH
37812OIU0.15570C59G60A61A62A63G64cWWtSH
38981FJG0.15570C379G380C381A382A383G384cWWtSH
391241FJG0.15880C897G898C899A900A901G902cWWtSH
40434FRG0.15970C46G47A48A49A50G51cWWtSH
41834LCK0.16030C71G72A73A74A75G76cWWtSH
42784QK80.16110C13G14A15A16A17G18cWWtSH
43504V9F0.16230C2695G2696A2697G2698A2699G2700cWWtSH
441111S720.16330C89G90C91G92A93G94cWWtSH
451903GX50.16350A49G50A51A52A53U54cWWtSH
46534IOA0.16350C2637G2638A2639G2640A2641G2642cWWtSH
47861FJG0.16600C1165G1166A1167A1168A1169G1171cWWtSH
48513J790.16620C3411G3412A3413G3414A3415G3416ntWHcWWtSH
49634V4Q0.16830C186G187C188A189A190G191cWWtSH
501223JAM0.16870C1120G1121C1122A1123A1124G1125cWWtSH
51651MZP0.16980C25G26C27A28A29G30cWWntSH
521254V880.17140C1121G1122C1123A1124A1125G1126cWWtSH
53574V8P0.17170C3014G3015A3016G3017A3018G3019cWWtSH
54662EZ60.17190C11G12C13A14A15G16cWWtSH
551952OIU0.17220C28G29A30A31A32G33ntWHcWWtSHncSW
561124V8C0.17380G86G87C88G89A89C90cWWtSH
57545AJ00.17440C4565G4566A4567G4568A4569G4570cWWtSH
58675FDU0.17450C1837G1838U1839A1840A1841G1842cWWtSH
59373A3A0.17450C47U47A47G47C47G47ntHScWWcWWntSHntHSntHScWWcWW
60403J790.17630U1693G1694A1695A1696A1697A1698cWWtSH
61934V880.17690C599G600U601A602A603G604cWWntSH
62385AN90.17790U2431U2432A2433A2434A2435A2436cWWntSH
63584V910.17830C3025G3026A3027G3028A3029G3030cWWtSH
64954V8P0.17870C2733G2734A2735A2736A2737G2738cWWntSH
651635F9R0.18090U90G91A92A93A94A95cWWtSH
661263J7A0.18260C1222G1223C1224A1225A1226G1227cWWtSH
671935FW30.18320U72G73A74A75A76A77ntSHcWWntSHtSH
68394P8Z0.18330C99U100A101A102C103G104cWWntSH
69995AJ00.18370U387G388A389A390G391A392cWWntSH
70254K500.18380U587G588A589A590A591G592cWWtSH
711162PXV0.18440C153G154A155A156A157G158cWWtSH
7284V4Q0.18570C862U863A864A865C866G867cWWntSH
731921UN60.18990G82G83A84A85A86C94tSHcWWtSH
7474P9R0.19390C317U318A319A320C321G322cWWntSH
75493KTW0.19670C209G210G211A212A213G214ntWHcWWntSH
76343J9W0.19730C2403G2404A2405A2406A2407G2408cWWtSH
77353J9W0.19750C387G388A389A390A391G392cWWtSH
78874BW00.19900C9G10A11A12A13G14cWWtSH
79565FDU0.19910C2670G2671A2672G2673A2674G2675cWWtSH
801343J7P0.19930C4603G4604A4605G4606A4607G4608cWWtSH
811234BTS0.19950C1094G1095C1096A1097A1098G1099cWWtSH
82943JCS0.19970C1173G1174A1175A1176A1177G1178cWWntSH
8363PDR0.20070C68C69A70A71A72G73cWWntSH
84605FDU0.20180C513G514G515G516A517G518cWWtSH
851835FJC0.20480A49G50A51A52A53U54cWWtSH
86454V9F0.20520C252U253C254A255C256G257cWWntSH
87261KXK0.20690U33G34A35A36A37G38cWWtSH
881603Q1Q0.20710G135G136A137A138A139C140cWWtSH
891484BTS0.20730A1056G1057A1058A1059A1060U1061ntSHcWWntSH
90234PCJ0.20810U16G17A18A19A20G21cWWtSH
911745DDP0.20900G11G12A13A14A15C16ntSHcWWtSH
921824L810.21050G57G58A59G60A61C62cWWtSH
93244K270.21050U26G27A28A29A30G31cWWtSH
941884AOB0.21100A49A50A51A52A53U54cWWtSH
951894AOB0.21100A49A50A51A52A53U54cWWtSH
961274V9F0.21270C1862G1863C1864A1865A1866G1867cWWtSH
971474V880.21440A1084G1085A1086A1087A1088U1089cWWntSH
982835J7L0.21470G629G630A631A632A633C634cWWntSH
991614AOB0.21550G73G74A75A76A77C78ntSHtSHcWWtSH
1001624AOB0.21550G73G74A75A76A77C78cWWtSH
1011574V190.21580C1459G1460A1461A1462A1463G1464cWWtSH
1021914U4U0.21640G88G89U90G91A92C93cWWtSH
103225BTM0.21730U26G27A28A29A30G31cWWtSH
1041785FJC0.21850G73G74A75A76A77C78ntSHtSHcWWtSH
1053365AN90.21940C3296G3297U3298G3299A3300G3301cWWtSH
1063193SUX0.22040C65G66A67A68A69G70cWWntSH
1073183SUX0.22040C65G66A67A68A69G70cWWntSH
1081945GAD0.22180C52G53G54A55A56G57cWWtSH
1091774Y1J0.22450G20G21A22A23A24C25ntSHcWWtSH
110803D0U0.22480C142G143A144A145A146G147cWWtSH
111284V4Q0.22510U296G297A298G299A300G301cWWtSH
112474V8P0.22620C757G758C759A760A761G762cWWtSH
1131284V4Q0.22620C897G898C899A900A901G902cWWtSH
1141404V910.22760A2220G2221A2222A2223A2224U2225cWWntSH
1151803J790.22790A391G392G393A394A395U396ntSHcWWtSH
1161874V8P0.22930G86G87G88G89A90C91cWWtSH
1171293J9W0.22960C907G908C909A910A911G912cWWtSH
1181454V4Q0.22970A1012G1013A1014G1015A1016U1017cWWntSH
1191851Q930.23030G13G14A15G16A17C18cWWtSH
1202223J7Y0.23030A2902U2903A2904A2905C2906U2907cWWntSH
1212105DDO0.23050G11G12A13A14A15C16ntSHcWWtSH
122464V880.23090C732G733C734A735A736G737cWWtSH
123883P220.23090C17G18A19A20A21G22cWWtSH
124964V9F0.23131C1793G1794G1795A1796A1797G1799cWWntSH
125904V910.23161A2164G2165A2166A2167A2168U2170cWWtSH
1261562XXA0.23180C47G48G49A50A51G52cWWntSHtSH
127924V910.23290C599G600U601A602A603G604cWWntSH
1282825FDU0.23330G654G655A656A657A658C659cWWntSH
12991FJG0.23330C862U863A864A865C866G867cWWntSH
1302024V880.23360G844G845A846A847A848C849cWWntSH
131363J9W0.23570C675G676A677A678A679G680cWWntSH
1322114V9F0.23581G1054G1055U1056A1057A1058C1060cWWtSH
1332983J790.23610U3083G3084A3085A3086A3087G3088cWWntSH
1341975CZZ0.23670G34G35A36A37A38C39tSHcWWtSH
1351793GX50.23700G73G74A75A76A77C78ntSHtSHcWWtSH
1362001U6B0.23890G23G24A25A26A27C28cWWtSH
137445FDU0.23892C1000G1001A1002A1004A1005G1007cWWtSH
1382245F9R0.23890U41G42A43A44A45A46cWWtSH
1392851U9S0.23910G204G205C206A207A208C209ntSHcWWtSH
1402724Y1M0.23980A81G82A83A84A85U86cWWtSH
1411503J7A0.24080A1185G1186A1187A1188A1189U1190cWWntSH
1421993V7E0.24110G105G106A107A108A109C110cWWtSH
1433084V8P0.24140C732G733A734A735A736G737cWWtSH
1441594ZT00.24140A32G33A34A35A36U37ntWHcWWntSH
1451445AN90.24170G3077G3078A3079A3080A3081C3082cWWntSH
1461654V9F0.24280G1628G1629A1630A1631A1632C1633cWWtSH
1471463J7P0.24350G1141G1142A1143A1144A1145C1146cWWntSH
1481335A2Q0.24470U1178G1179C1180A1181A1182A1183cWWtSHncHS
149894V880.24621A2164G2165A2166A2167A2168U2170cWWtSH
1502233T4B0.24710G9G10A11A12A13C14tSHntSHcWWtSH
1513074V9F0.24820C2411G2412A2413A2414A2415G2416cWWntSH
1521753J7Q0.24850G86G87A88G89A90C91cWWtSH
1531675AJ00.24850G1543G1544A1545A1546A1547C1548cWWtSH
1543135J7L0.24870C2374G2375A2376A2377A2378G2379cWWntSH
155214R0D0.24870U563G564A565A566A567G568cWWtSH
1561495A2Q0.24910G1141G1142A1143A1144A1145C1146cWWntSH
1572074R0D0.25090C173G174A175A176A177G178cWWtSH
1581434R0D0.25150A390G391C392A393A394U395cWWtSH
1593353J790.25170C3322G3323U3324G3325A3326G3327cWWntSH
1601734V9F0.25210G690G691A692A693A694C695ntSHcWWtSH
1611313J9W0.25300C509G510U511G512A513G514cWWtSH
1621394V880.25380A2220G2221A2222A2223A2224U2225cWWntSH
1633124P8Z0.25430C157G158A159A160A161G162cWWntSH
1642782NZ40.25500G108G109U110G111A112C113cWWntSH
1651661FJG0.25690G158G159A160A161A162C163ntSHcWWtSH
1662795J7L0.25770A2856G2857C2858G2859A2860U2861cWWntSH
1671813J920.25870G86G87A88G89A90C91cWWtSH
1681584V8P0.25880G869G870A871A872A873C874cWWtSH
1691553J790.25910A2458C2459A2460A2461C2462U2463cWWntSH
1702694WFL0.25980G81G82U83A84A85C86cWWtSH
1711425FW30.26020A32G33A34A35A36U37ntWHcWWntSH
1721843E5C0.26050G18G19A20A21A22C23tSHcWWtSH
1732013MOJ0.26200G2529G2530A2531A2532A2533C2534cWWtSH
1741641X8W0.26210G149G150A151A152A153C154ntSHcWWntSHntSH
1751764L810.26210G13G14A15G16A17C18cWWtSH
1761005F9F0.26220A10G11U12G13A14U15cWWntSH
177973J7P0.26230U393G394A395A396G397A398cWWntSH
178291FJG0.26420U296G297A298G299A300G301cWWtSH
179914V910.26441C1023G1024A1025A1026A1027G1029cWWntSH
1801513JAM0.26710A1083G1084A1085A1086A1087U1088cWWntSH
1812733Q1Q0.26770G284G285U286A287A288C289cWWntSH
1821981NBS0.26850A204G205A206A207A208U209ntSHcWWtSH
1832861U9S0.27020G99G100U101A102A103C104cWWtSH
184614IOA0.27070C498G499G500G501A502G503cWWtSH
185165A2Q0.27080C539U540U541U542C543G544cWWntSH
1861543J9W0.27220G2881G2882C2883G2884A2885C2886cWWtSH
1872743J7Y0.27310A3081G3082U3083A3084A3085U3086cWWtSH
1883344BTS0.27370U1472G1473G1474G1475A1476A1477cWWntSH
1891323J9W0.27420C1274G1275C1276G1277A1278G1279cWWntSH
1902084IOA0.27582A966G967C968A970A971U973cWWtSH
1911864V9F0.27630G2876G2877U2878A2879A2880C2881ntSHcWWtSH
1923305J7L0.27760C462G463U464G465A466G467cWWntSH
193593J9W0.27760C1835G1836U1837A1838A1839G1840cWWtSH
1941303J9W0.27820C2623G2624U2625G2626A2627G2628cWWtSH
1953282OIU0.27870C59G60A61A62A63G64cWWtSH
1962844V190.28070A1415G1416C1417A1418A1419U1420cWWntSH
197841X8W0.28210C322G323A324A325A326G327cWWntSH
1982033RW60.28230G27G28A29A30A31C32tSHcWWtSH
1992804IOA0.28280A2831G2832C2833A2834A2835U2836cWWntSH
2002125AN90.28291G1363G1364U1365A1366A1367C1369cWWntSH
2012713J7A0.28291G152A153A154A155A156C158cWWntSH
2023213J7P0.28390U1178G1179C1180A1181A1182A1183cWWtSHncHS
2031713IAB0.28420G78G79A80A81A82C83cWWtSH
2041703IAB0.28420G78G79A80A81A82C83cWWtSH
2053243J7Y0.28430C1786G1787C1788A1789A1790G1791cWWntSH
2062093J9W0.28502U1001G1002A1003A1005A1006A1008cWWtSH
2071965DCV0.28570G26G27A28A29A30C31ntSHcWWtSH
2082044V4Q0.28600G158G159A160A161A162C163ntSHcWWtSH
209313J9W0.28720U1764G1765C1766A1767A1768G1769ntSHcWWtSH
2103315FDU0.28730C488G489U490G491A492G493cWWntSH
211203RG50.28770U47U47A47G47C47G47ntSHntSHntHSntHScWWcWW
212193RG50.28770U47U47A47G47C47G47ntSHntSH
2133783J9M0.28870C1023G1024A1025A1026A1027G1028cWWntSH
214484V8P0.28940A582G583C584A585A586U587cWWtSH
2153773J7A0.28940C1006G1007A1008A1009A1010G1011cWWntSH
2161683J9W0.28980G157G158A159A160A161C162ncWWcWWntSH
2172974V880.29070U2744G2745A2746A2747A2748G2749cWWntSH
2181723JAN0.29100G197G198A199A200A201C202cWWtSH
2193444V880.29160C2963G2964U2965G2966A2967G2968cWWntSH
2202751Y0Q0.29230A101G102U103A104A105U106cWWtSH
2211385AN90.29240A2486G2487A2488G2489A2490U2491cWWntSH
222103J9W0.29350C872U873A874A875C876G877cWWntSH
2233094IOA0.29370C640G641A642A643A644G645cWWntSH
2242684V880.29490A357G358U359G360A361U362cWWntSH
2253403J9W0.29720C1086G1087U1088G1089A1090G1091cWWntSH
2263415AJ00.29920C4502G4503U4504G4505A4506G4507cWWntSH
2273274QK90.29930C56G57U58A59A60G61cWWntSH
2283465J7L0.29950C2594G2595U2596G2597A2598G2599cWWntSH
2293103J9M0.30030C842G843A844A845A846G847cWWntSH
2302154V880.30051G1126G1127U1128A1129A1130C1132cWWntSH
2313114P9R0.30120C567G568A569A570A571G572cWWntSH
2321353J7Y0.30130C3126G3127A3128A3129A3130G3131cWWtSH
233334V910.30220C732G733C734A735A736G737cWWtSH
2343764BTS0.30320C915G916A917A918A919G920cWWntSH
2353162ZZM0.30350C47G47U47A47G47G47cWWntHScWWcWWntSHntHSntHS
2362771FJG0.30420G1265G1266C1267A1268A1269C1270cWWntSH
2372144V910.30501G1126G1127U1128A1129A1130C1132cWWntSH
2383753JAM0.30590C936G937A938A939A940G941cWWntSH
2392763Q1Q0.30660G92G93U94G95A96C97cWWntSH
2403263NKB0.30690C49G50A51A52A53G54cWWtSH
2412214OO80.30730A32G33A34A35A36U37ntWHcWWntSH
2422995AJ00.30760U4283G4284A4285A4286A4287G4288cWWntSH
2433255AJ00.30830C362G363U364A365A366G367cWWntSH
2443323E5C0.30840C41G42A43A44A45G46cWWtSH
2452953J7P0.30850U4321G4322A4323A4324A4325G4326cWWntSH
2462935J7L0.30890U2356G2357A2358C2359G2360G2361cWWntSH
2473745A2Q0.31110C994G995A996A997A998G999cWWntSH
2482674V910.31260A357G358U359G360A361U362cWWntSH
2492133J790.31291G1254G1255U1256A1257A1258C1260cWWtSH
2503223J7P0.31310C4540G4541U4542G4543A4544G4545cWWntSH
2513294IOA0.31400C473G474U475G476A477G478cWWntSH
2523035FDU0.31450U1895G1896C1897A1898A1899G1900cWWntSH
2532964V910.31510U2744G2745A2746A2747A2748G2749cWWntSH
254301FJG0.31630U1012G1013A1014A1015A1016G1017cWWntSH
2553803J9W0.31680C735G736A737A738G739G740cWWntSH
2561521Y0Q0.31730G204G205A206A207A208C209ntSHcWWtSH
2572553J7P0.31980A1353G1354C1355G1356A1357U1358cWWntSH
258173J7P0.31980C539U540U541U542C543G544cWWntSH
2593494V8P0.32120U356G357C358G359A360A361cWWntSH
2603375FDU0.32140C2606G2607U2608G2609A2610G2611cWWntSH
2613454V9F0.32170C2629G2630U2631G2632A2633G2634cWWntSH
2623795AJ30.32250C376G377A378A379A380G381cWWntSH
2632662GCS0.32280G113G114C115G116A117C118cWWntSH
2641371Y0Q0.32320A21G22U23A24A25U26cWWntSH
2651415AJ00.32330A3695G3696A3697A3698A3699U3700cWWntSH
2663145AJ00.32350C2540G2541C2542G2543A2544G2545cWWntSH
2673014V880.32400U707G708A709A710A711G712cWWntSH
268143JCS0.32471C410C411A412A413G414G416cWW
2692614V8P0.32580G1658G1659U1660A1661A1662C1663cWWntSH
2703574YAZ0.32610C25G26C27G28A29G30cWWntSH
2713065AJ30.32620C198G199A200A201A202G203cWWntSH
2722574V880.32680A1296G1297U1298G1299A1300U1301cWWntSH
273274R0D0.32700U481G482A483A484A485G486ntWHcWWtSH
2743024V910.32730U707G708A709A710A711G712cWWntSH
2753171Y0Q0.32770C130G131A132U133A134G135cWWntSH
2763603W3S0.32810C47G47C47A47A47G47cWWcWWcWWntSHntSHcWWntHSntHS
2773593W3S0.32810C47G47C47A47A47G47cWWcWWcWWntSHntSHcWWntHSntHS
278323J9W0.32820U304G305A306G307A308G309cWWtSH
2793531NYI0.32840C111G112U113A114A115G116cWWntSH
2802814IOA0.32890G2353G2354A2355A2356A2357C2358cWWntSH
2813524V9F0.32970U468G469U470G471A472A473cWWntSH
2822565A2Q0.33000A1353G1354C1355G1356A1357U1358cWWntSH
2832704R0D0.33020A87G88U89A90A91U92cWWntSHncHS
284623J9W0.33100C534G535G536A537A538G539cWWtSH
2853424V190.33300C121G122U123A124A125G126cWWntSH
2863564V9F0.33310C576G577C578G579A580G581cWWntSH
2873204R0D0.33400A600G601A602G603A604U605cWWntSH
2883394IOA0.33420C2573G2574U2575G2576A2577G2578cWWntSH
2892174V8P0.33461G1153G1154U1155A1156A1157C1159cWWntSH
2902625AJ00.33610G2557G2558U2559A2560A2561C2562cWWntSH
2913554V910.33630C2963G2964U2965G2966A2967G2968cWWntSH
2923384V8P0.33650C2951G2952U2953G2954A2955G2956cWWntSH
2932183J7P0.33850G1178U1179C1180C1181C1182C1183cWWntSH
2943435FDU0.34150C2866G2867C2868G2869A2870G2871cWWntSH
2952924C7O0.34360C19G20G21A22A23G24cWWntSH
2963005AJ00.34360U1372G1373A1374A1375G1376G1377cWWntSH
2973724L810.34380C76G77A78G79A80G81cWWtSH
2982634V910.34430G1634G1635U1636A1637A1638C1639cWWntSH
2993513J790.34430C365G366U367G368A369G370cWWntSH
3002583JAM0.34620A1295G1296U1297G1298A1299U1300cWWntSH
3013582BTE0.34820C46G47C47A47A47G47cWWntSHntSHcWWntHSntHS
3021533J9W0.34960A1022G1023A1024G1025A1026U1027cWWtSH
3033155DM60.35260C88G89C90A91G92G93cWWntSH
3043714V4Q0.35330C726G727A728A729G730G731cWWntSH
3052653J790.35360G1783G1784U1785A1786A1787C1788cWWntSH
306115AJ30.35480C248C249A250C251C252G253cWW
3071693J7P0.35540G1561G1562A1563A1564A1565C1566cWWtSH
3083334PQV0.35610C13G14A15A16A17G18cWWtSH
309123J9M0.35690C894C895A896C897C898G899cWWntSH
3103054LVZ0.35730C58G59A60G61A62G63cWWntSH
3113044IOA0.35760U1856G1857C1858A1859A1860G1861cWWntSH
3123543J790.35850C1551G1552U1553G1554A1555G1556cWWntSH
3132594BTS0.35900A1268G1269U1270G1271A1272U1273cWWntSH
3142644V880.35930G1634G1635U1636A1637A1638C1639cWWntSH
315183J7P0.36020U197U198C199G200C201G202cWWntSH
3163233J7P0.36140C368G369U370A371A372G373cWWntSH
3172204IOA0.36190C146G147C148A149A150G151cWWntSH
3183734V880.36240C937G938A939A940A941G942cWWntSH
3192054R0D0.36310G369G370A371A372A373C374ntSHntSHcWWtSH
3203505FDU0.36490C1268G1269C1270G1271A1272G1273cWWntSH
3213484V4Q0.36870U1076G1077U1078G1079A1080A1081cWWntSH
3222165AJ00.37461G1845G1846U1847A1848A1849C1851cWWntSH
3233691G1X0.37590C726G727A728A729G730G731cWWntSH
3243474V4Q0.37630C1265G1266C1267G1268A1269G1270cWWntSH
3252193J7P0.37920A1421G1422C1423G1424G1425U1426ntWHcWWntSH
3263701G1X0.38070C726G727A728A729G730G731cWWntSH
3272474WZJ0.38370G50G51U52A53A54C55tSHcWWtSH
3282603Q1Q0.38490G187G188C189A190A191C192tSHcWWntSH
3292251X8W0.38550G234G235A236G237A238C240ntSHcWWntSH
330155A2Q0.38860U197U198C199G200C201G202cWWntSH
3313611FJG0.38890C1076G1077U1078G1079A1080G1081cWWntSH
3322941G1X0.39480C590G591A592A593A594G649cWWntSH
3333681FJG0.39540C726G727A728A729G730G731cWWntSH
3342894KQY0.40190C60G61A62A63A64G65cWWtSH
3352884KQY0.40190C60G61A62A63A64G65cWWtSH
3363955AJ00.40850C2437G2438A2439G2440C2441G2442cWW
3373943J7P0.41150C2458G2459A2460G2461C2462G2463cWW
3382504OO80.41520U72G73A74A75A76A77ntSHcWWntSHtSH
3393644V910.41900C1403G1404U1405A1406A1407G1408cWWntSH
3403673NPN0.41900C20G21A22A23A24G25cWWtSH
3413624V880.41920C1403G1404U1405A1406A1407G1408cWWntSH
3422904V910.41980G844G845A846A847A848C849cWWntSH
3432262OIU0.41980C28G29A30A31A32G33ntWHcWWtSHncSW
3441363J7P0.42180A3724G3725A3726A3727A3728U3729cWWntSHntSHncHS
3453655AJ00.42730C2296G2297C2298G2299G2300G2301cWWntSH
3462464V8P0.42820U2160C2161A2162A2163C2164A2165cWW
3473634V9F0.43350C1326G1327A1328G1329A1330G1331cWWntSH
3482493JAN0.43570G146G147G148A149G150C151cWWntSH
3492544V910.44080G1544A1545A1546G1547C1548U1549cWW
3503931U6B0.44720C153A154A155A156C157G158cWW
3512453J9W0.44880C531A532G533C534C535G536cWW
3523964QK90.44950C14U15G16A17A18G19cWW
3533825J7L0.45420C1363G1364A1365A1366A1367G1368cWWntSH
3542534V880.46070G1544A1545A1546G1547C1548U1549cWW
3553833J9W0.46230C1402G1403A1404A1405A1406G1407cWWntSH
3563815FDU0.46270C1409G1410A1411A1412A1413G1414cWWntSH
3573983JAM0.46671G153U154A155A156U157C159cWW
3582481JID0.46820G146G147G148A149G150C151cWWntSH
35953AM10.46870C32U33U34C35G36G37cWWncWW
36043AM10.46870C32U33U34C35G36G37cWWncWW
3613904V4Q0.47060G1515G1516G1517A1518A1519C1520cWWntSH
3622064V9F0.47691G1468C1469A1470A1471C1472C1474cWWntWH
3632913J790.49320C963G964A965A966A967G968cWWntSH
3642431FJG0.50080C522A523G524C525C526G527cWW
3652284ZT00.50320U72G73A74A75A76A77ntSHcWWntSHtSH
3662333J7A0.50620C1797G1798A1799A1800A1801G1802cWWtSH
3672353J7P0.50830C1565G1566G1567C1568A1569G1570cWWntSH
3683873J7A0.51380G2070U2071G2072A2073A2074C2075cWW
3693913J9W0.51560C1525G1526G1527A1528A1529G1530cWWntSH
3702523J7P0.52020G2705G2706U2707U2708C2709C2710cWW
37124V880.52290A1760C1761C1762U1763U1764U1765cWWncSW
3723975A2Q0.52951G156U157A158A159U160C162cWW
3732444V4Q0.52990C522A523G524C525C526G527cWW
3743994V880.53451G154U155A156A157U158C160tSHcWW
3753885A2Q0.53940G1847U1848G1849A1850A1851C1852cWWntSHncWW
3763894V880.54000G1778U1779G1780A1781A1782C1783cWW
3773923J9M0.54020U1580G1581G1582A1583A1584A1585cWWntSH
3783663J9W0.54060C1262G1263G1264A1265A1266G1267cWWntSHntSH
37935A2Q0.55140U416C417A418G419G420G421cWW
3802344V880.55580C1501G1502A1503G1504A1505G1506cWWtSH
3812275DDO0.55660G11G12A13A14A15C16ntSHcWWtSH
3822323J9W0.56570C2687G2688A2689G2690A2691G2692cWWtSH
3832874V4Q0.56750C379G380C381A382A383G384cWWtSH
3843844IOA0.56900C1376G1377A1378A1379C1380G1381cWW
3852313J7Y0.56962G2107G2108A2109C2111A2112C2114cWWtSH
386133J7A0.58180U374U375A376G377A378G379cWW
3872383J7A0.58620C576A577G578C579C580G581cWWntSH
3882365A2Q0.59920C1565G1566G1567C1568A1569G1570cWWntSH
38914V9F0.60240U733U734C735A736A737G738cWWntSH
3902414V880.60590C569A570G571C572C573G574cWWntSH
3912403JAM0.60710C568A569G570C571C572G573cWW
3923863JAM0.61180G1776U1777G1778A1779A1780C1781cWW
3932424BTS0.61230C563A564G565C566C567G568cWWntSH
3942375G2X0.61490C2410G2411A2412G2413A2414G2415cWW
3952395A2Q0.61530C618A619G620C621C622G623cWWntSH
3962304V190.61532G441G442U443C445A446C448cWWntSH
3973853J7P0.64180G1847U1848G1849A1850A1851C1852cWWntSHncWW
3984004BTS0.66861C148U149A150A151U152G154cWW
3992513Q1Q0.67710A29C30A31C32C33U34cWWntSHncSW
4002293J9M0.69990A768G769C770A771A772U773cWWntSS

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG71
GGAAAC40
CGCAAG21
CGUGAG20
CGAGAG19
AGAAAU15
UGAAAG15
CGUAAG13
UGAAAA12
GGUAAC10
CAGCCG8
CGCGAG8
CGGAAG8
GGUAAGC7
AGUGAU6
GGAGAC6
AGCAAU5
CUAACG5
GUGAAC5
CGAAGG5
AGUAAU4
AGAGAU4
UGCAAG3
AGCGAU3
GGCGAC3
GUAAUUC3
UGAGAG3
CGGGAG3
GGUGAC3
GGCAAC3
CGGCAG2
UUAGCG2
CUUUCG2
GGGAGC2
CCACCG2
AAAAAU2
UUCGCG2
UGAAGA2
CGAGCG2
UGCAAA2
CUUCGG2
AGAAAGU2
GAAGCU2
UGUGAA2
CUGAAG1
UCAACA1
CAAACG1
UGGAAA1
UUCAAG1
UUAGAG1
GGUACAGC1
CUAAUUG1
ACACCU1
GGAACAGC1
CGAACG1
GGUUCC1
GCAACUC1
ACCUUU1
CGCGGG1
UCAGGG1
GGGAAC1
AGCUAACU1
AUAACU1
CGGAACG1
CGAUAACG1
ACAACU1
GGGGAC1
AGGAAU1
CUAGCG1
UUAAAA1
CCAAAG1
CUCACG1
CGAAAUG1
UGGGAA1
CGAUAG1
GUCCCC1
UGAAGG1
CGCAGG1
CCAAGUG1
UGCGAA1
GAAAAGC1
UGAUAAGA1
CGUAGG1
UGACGG1
AGCGGU1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA153
GCAA34
GAGA32
GUGA31
GUAA27
GCGA15
GGAA11
AGCC8
GAAG8
GUAAG7
UGAA6
UAAC6
GGGA5
UAAUU4
CACC3
UAGC3
CAAC2
GGCA2
UUUC2
AAAA2
GGAG2
AAGC2
GAGC2
UUCG2
GAAAG2
GCGG2
UCGC2
GAAC1
UAGA1
UCAA1
GUACAG1
GAACAG1
AAAC1
GUUC1
CCUU1
CAGG1
CAACU1
GUAG1
GAUAAC1
GAAAU1
GGAAC1
UCAC1
UAAA1
CAAA1
GCUAAC1
AAAAG1
GAUA1
UCCC1
CAAGU1
GACG1
GAUAAG1
GCAG1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.