Description:
GNRA Hairpin motifs
Basepair signature:
cWW-tSH-R-R
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.01 | Avg 0.41 | Max 0.96
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 61-21-31-41-51-62-32-42-52-63-43-64-54-65-6
12154A1B0.00000U381G382A383A384A385A386cWWtSH
22143U5H0.08800U382G383A384A385A386A387cWWntSH
32121RLG0.10590C9G10A11A12A13G14cWWtSH
42131HMH0.10950C104G21A22A23A24G114cSScWWntSHntWS
52544CUV0.12110U382G383A384A385A386A387cWWntSH
62163NVI0.12570C9G10A11A12A13G14cWWtSH
72204TZZ0.12640C71G72A73A74A75G76cWWtSH
82173UCZ0.12780C31G32A33A34A35G36cWWtSH
92183IWN0.12810C21G22A23A24A25G26cWWntSH
102071S720.12930C804G805A806A807A808G809cWWtSH
111971S720.13070C2248G2249G2250G2251A2252G2253cWWtSH
122194ENB0.13430U28G29A30A31A32A33cWWtSH
132092OIU0.13510C10G11A12A13A14G15cWWtSH
142054PLX0.13580C24G25A26A27A28G29cWWtSH
152044PLX0.13640C24G25A26A27A28G29cWWtSH
162061G1X0.14120C590G591A592A593A594G649cWWtSH
171943AM10.14140C45G46A47G48A49G50cWWtSH
182114GMA0.14150C119G120A121A122A123G124cWWtSH
192013U5H0.14700C3025G3026A3027G3028A3029G3030nbifcWWtSH
202264JF20.14800C8G9A10A11A12G13cWWtSH
212082OIU0.14820C10G11A12A13A14G15cWWtSH
222104TZZ0.14840C71G72A73A74A75G76cWWtSH
231963DVZ0.14900C2658G2659A2660G2661A2662G2663cWWtSH
242231KH60.14990C28G29A30A31A32G33cWWtSHncSW
251742EZ60.14990C11G12C13A14A15G16cWWtSH
262534QCN0.15080C2386G2387A2388A2389A2390G2391cWWntSH
272251HMH0.15370C104G21A22A23A24G114cSScWWntSHntWS
281774QCN0.15420C1837G1838U1839A1840A1841G1842cWWtSH
292212OIU0.15570C59G60A61A62A63G64cWWtSH
302521FJG0.15570C379G380C381A382A383G384cWWtSH
312511VW30.15630C2641G2642U2643A2644A2645G2646cWWtSH
321891S720.15700C2695G2696A2697G2698A2699G2700cWWtSH
331171FJG0.15880C897G898C899A900A901G902cWWtSH
342001Q960.15930U13G14A15G16A17A18cWWtSH
352274FRG0.15970C46G47A48A49A50G51cWWtSH
361784QK80.16110C13G14A15A16A17G18cWWtSH
371831VW30.16140C2925G2926C2927A2928A2929G2930nbifcWWtSH
381951S720.16330C89G90C91G92A93G94cWWntSH
393023GX50.16350A49G50A51A52A53U54cWWntSH
402024IOA0.16350C2637G2638A2639G2640A2641G2642cWWtSH
412241FJG0.16600C1165G1166A1167A1168A1169G1171cWWtSH
421901VX60.16620C3411G3412A3413G3414A3415G3416nbifcWWtSH
431872AW70.16830C186G187C188A189A190G191cWWtSH
441761MZP0.16980C25G26C27A28A29G30cWWtSH
451183U5F0.17140C1121G1122C1123A1124A1125G1126cWWntSH
461914A1B0.17170C3014G3015A3016G3017A3018G3019nbifcWWtSH
471752EZ60.17190C11G12C13A14A15G16cWWtSH
482982OIU0.17220C28G29A30A31A32G33cWWtSHncSW
491604K500.17280U587G588A589A590A591G592cWWtSH
501921VX60.17630U1693G1694A1695A1696A1697A1698cWWtSH
512563U5H0.17690C599G600U601A602A603G604cWWntSH
521732IL90.17770C6119G6119A6119A6119A6119G6119ncWWncWW
531884CUV0.17830C3025G3026A3027G3028A3029G3030nbifcWWtSH
542554A1B0.17870C2733G2734A2735A2736A2737G2738cWWntSH
551193J7A0.18260C1222G1223C1224A1225A1226G1227cWWtSH
562354P8Z0.18330C99U100A101A102C103G104cWWntSHntSH
571594K500.18380U587G588A589A590A591G592cWWtSH
581992PXV0.18440C153G154A155A156A157G158cWWtSH
592034QCN0.18450C2670G2671A2672G2673A2674G2675nbifcWWtSH
602372AW70.18570C862U863A864A865C866G867cWWntSHntSH
611824QCN0.18650C513G514G515G516A517G518nbifcWWtSH
622461UN60.18990G82G83A84A85A86C94cWWntSH
632364P9R0.19390C317U318A319A320C321G322cWWntSHntSH
641853KTW0.19670C209G210G211A212A213G214cWWntSH
651861LNG0.19860C208G209G210A211A212G213cWWtSH
662284BW00.19900C9G10A11A12A13G14cWWtSH
671984W210.19930C4603G4604A4605G4606A4607G4608cWWtSH
681164BPP0.19950C1094G1095C1096A1097A1098G1099cWWtSH
692474UN30.19980U72G73A74A75A76A77cWWtSH
701842QBG0.20090C2658G2659A2660G2661A2662G2663cWWtSH
712814B5R0.20420A49G50A51A52A53U54cWWntSH
721631KXK0.20690U33G34A35A36A37G38cWWtSH
732323Q1Q0.20710G135G136A137A138A139C140cWWtSH
742704BPP0.20730A1056G1057A1058A1059A1060U1061ntSHcWWntSH
751614FNJ0.20840U16G17A18A19A20G21cWWtSH
763014L810.21050G57G58A59G60A61C62cWWtSH
771624K270.21050U26G27A28A29A30G31cWWtSH
783034AOB0.21100A49A50A51A52A53U54cWWtSH
791151S720.21320C1862G1863C1864A1865A1866G1867cWWtSH
803004B5R0.21340G73G74A75A76A77C78tSHcWWtSH
812713U5F0.21440A1084G1085A1086A1087A1088U1089cWWntSH
823064AOB0.21550G73G74A75A76A77C78tSHcWWtSH
831113SUX0.22040C65G66A67A68A69G70cWWntSH
843134UN50.22050U72G73A74A75A76A77cWWtSH
851002QBG0.22050C2374G2375A2376A2377A2378G2379cWWntSH
863103V7E0.22170G305G306A307A308A309C310cWWtSH
871803P220.22460C17G18A19A20A21G22ncSScWWtSH
882223D0U0.22480C142G143A144A145A146G147cWWtSH
892332QBZ0.22510C68C69A70A71A72G73cWWntSH
901662AW70.22510U296G297A298G299A300G301cWWtSH
913231S720.22561G1054G1055U1056A1057A1058C1060cWWtSH
921694A1B0.22620C757G758C759A760A761G762cWWtSH
931142AW70.22620C897G898C899A900A901G902cWWtSH
942734CUV0.22760A2220G2221A2222A2223A2224U2225cWWntSH
952991VX60.22790A391G392G393A394A395U396ntSHcWWtSH
962864A1C0.22930G86G87G88G89A90C91cWWtSH
973152AW70.22970A1012G1013A1014G1015A1016U1017cWWntSH
982414QCN0.22982C1000G1001A1002A1004A1005G1007cWWtSH
993044FAW0.23010G274G275A276A277A278C279cWWtSH
1001713U5H0.23090C732G733C734A735A736G737cWWtSH
1011793P220.23090C17G18A19A20A21G22ncSScWWtSH
1022314CUV0.23161A2164G2165A2166A2167A2168U2170cWWtSH
1031932XXA0.23180C47G48G49A50A51G52cWWtSH
1041204CUX0.23210C1121G1122C1123A1124A1125G1126cWWntSH
1052501S720.23271C1793G1794G1795A1796A1797G1799cWWntSH
1062574CUV0.23290C599G600U601A602A603G604cWWntSH
1072381FJG0.23330C862U863A864A865C866G867cWWntSHntSH
1082963U5H0.23360G844G845A846A847A848C849cWWntSH
1092662QBG0.23380G629G630A631A632A633C634cWWtSH
1101703CUN0.23380C7G8A9A10A11G12cWWtSH
111911VX60.23610U3083G3084A3085A3086A3087G3088cWWntSH
1123053GX50.23700G73G74A75A76A77C78tSHcWWtSH
1132494OO80.23810A32G33A34A35A36U37cWWntSH
1142624QCN0.23860G654G655A656A657A658C659cWWntSH
1153091U6B0.23890G23G24A25A26A27C28cWWtSH
1162651U9S0.23910G204G205C206A207A208C209cWWtSH
1171721S720.23930C252U253C254A255C256G257cWWntSH
1182693J7A0.24080A1185G1186A1187A1188A1189U1190cWWntSH
1193071GID0.24100G149G150A151A152A153C154cWWntSHntSH
1201054A1B0.24140C732G733A734A735A736G737cWWtSH
1211102Y9B0.24320U812G813A814A815A816A817cWWtSH
1223164W230.24350G1141G1142A1143A1144A1145C1146cWWntSH
1233081GID0.24390G149G150A151A152A153C154cWWntSHntSH
1242923U5H0.24390G88G89U90G91A92C93cWWtSH
125294OO80.24530U72G73A74A75A76A77cWWtSH
1262303U5H0.24621A2164G2165A2166A2167A2168U2170cWWtSH
1271041S720.24680C2411G2412A2413A2414A2415G2416cWWntSH
1283123T4B0.24710G9G10A11A12A13C14tSHcWWtSH
1292824W210.24850G86G87A88G89A90C91cWWtSH
1301584R0D0.24870U563G564A565A566A567G568cWWtSH
1313194R0D0.25090C173G174A175A176A177G178cWWtSH
1322684CUX0.25090A1084G1085A1086A1087A1088U1089cWWntSH
1332484R0D0.25150A390G391C392A393A394U395cWWtSH
134501VX60.25170C3322G3323U3324G3325A3326G3327cWWntSH
135262NZ40.25290G108G109U110G111A112C113cWWntSH
1362723U5H0.25380A2220G2221A2222A2223A2224U2225cWWntSH
1371014P8Z0.25430C157G158A159A160A161G162cWWntSH
1382841S720.25630G690G691A692A693A694C695cWWtSH
1392791FJG0.25690G158G159A160A161A162C163ntSHcWWtSH
1402781S720.25870G1628G1629A1630A1631A1632C1633cWWtSH
1412764A1B0.25880G869G870A871A872A873C874cWWtSH
1422341VX60.25910A2458C2459A2460A2461C2462U2463cWWntSH
1431132Y9B0.25950G850G851U852A853A854C855cWWtSH
1442873E5C0.26050G18G19A20A21A22C23tSHcWWtSH
145721VW30.26070C393G394U395A396A397G398cWWntSH
1462973MOJ0.26200G2529G2530A2531A2532A2533C2534cWWtSH
1472771X8W0.26210G149G150A151A152A153C154cWWntSHntSH
1482834L810.26210G13G14A15G16A17C18cWWtSH
1492434W210.26230U393G394A395A396G397A398cWWntSH
1501651FJG0.26420U296G297A298G299A300G301cWWtSH
1512584CUV0.26441C1023G1024A1025A1026A1027G1029cWWntSH
152103Q1Q0.26770G284G285U286A287A288C289cWWntSH
1532421VW30.26852C881G882A883A885A886G888cWWtSH
1543111NBS0.26850A204G205A206A207A208U209cWWtSH
1552901VX60.26990G86G87A88G89A90C91cWWtSH
1562881S720.27010G2876G2877U2878A2879A2880C2881cWWtSH
1572641U9S0.27020G99G100U101A102A103C104cWWntSH
1581814IOA0.27070C498G499G500G501A502G503cWWtSH
1592911MFQ0.27150G197G198A199A200A201C202cWWtSH
1602602QBG0.27200A2856G2857C2858G2859A2860U2861cWWtSH
161494BPP0.27370U1472G1473G1474G1475A1476A1477cWWntSH
1623244IOA0.27582A966G967C968A970A971U973cWWtSH
163752QBG0.27680C462G463U464G465A466G467cWWntSH
164744QCN0.27860C488G489U490G491A492G493cWWntSH
165772OIU0.27870C59G60A61A62A63G64cWWtSH
1662291X8W0.28210C322G323A324A325A326G327cWWtSH
1672953RW60.28230G27G28A29A30A31C32tSHcWWtSH
168274IOA0.28280A2831G2832C2833A2834A2835U2836cWWntSH
1692593J7A0.28291G152A153A154A155A156C158cWWntSHntSH
170474W230.28390U1178G1179C1180A1181A1182A1183cWWtSH
1712853IAB0.28420G78G79A80A81A82C83cWWtSH
1722942AW70.28600G158G159A160A161A162C163ntSHcWWtSH
1732894CUV0.28930G88G89U90G91A92C93cWWtSH
1741684A1B0.28940A582G583C584A585A586U587cWWtSH
175373J7A0.28940C1006G1007A1008A1009A1010G1011cWWntSH
176923U5H0.29070U2744G2745A2746A2747A2748G2749cWWntSH
177573U5H0.29160C2963G2964U2965G2966A2967G2968cWWntSH
178281Y0Q0.29230A101G102U103A104A105U106cWWtSH
179191VW30.29270U2861G2862U2863G2864A2865A2866cWWntSH
1801064IOA0.29370C640G641A642A643A644G645cWWntSH
181984QCN0.29430G86G87C88G89A90C91cWWtSH
182243U5H0.29490A357G358U359G360A361U362cWWntSH
183714QK90.29930C56G57U58A59A60G61cWWntSH
1841543RG50.29960U47U47A47G47C47G47ntSHntSHntHSntHScWWcWW
1852402QBG0.30022U955G956C957A959A960G962cWWtSH
1863223U5H0.30051G1126G1127U1128A1129A1130C1132cWWntSH
1871024P9R0.30120C567G568A569A570A571G572cWWntSH
188252NZ40.30130G108G109U110G111A112C113cWWntSH
189514QCN0.30170C2606G2607U2608G2609A2610G2611cWWntSH
1902444CUV0.30220C732G733C734A735A736G737cWWtSH
191384BPP0.30320C915G916A917A918A919G920cWWntSH
1921032ZZM0.30350C47G47U47A47G47G47cWWntHScWWcWWntSHntHSntHS
193121FJG0.30420G1265G1266C1267A1268A1269C1270cWWntSH
1943214CUV0.30501G1126G1127U1128A1129A1130C1132cWWntSH
195592QBG0.30640C2594G2595U2596G2597A2598G2599cWWntSH
1962674UN50.30640A32G33A34A35A36U37cWWntSH
197113Q1Q0.30660G92G93U94G95A96C97cWWntSH
198703NKB0.30690C49G50A51A52A53G54cWWntSH
199944QCN0.30720U1895G1896C1897A1898A1899G1900cWWntSH
200783E5C0.30840C41G42A43A44A45G46cWWntSH
201904W210.30850U4321G4322A4323A4324A4325G4326cWWntSH
202134FAW0.30850G89G90C91G92A93C94ntSHcWWntSH
203234CUV0.31260A357G358U359G360A361U362cWWntSH
2043201VX60.31291G1254G1255U1256A1257A1258C1260cWWtSH
205464W210.31310C4540G4541U4542G4543A4544G4545cWWntSH
206734IOA0.31400C473G474U475G476A477G478cWWntSH
207611S720.31410C576G577C578G579A580G581cWWntSH
208934CUV0.31510U2744G2745A2746A2747A2748G2749cWWntSH
2091641FJG0.31630U1012G1013A1014A1015A1016G1017cWWntSH
2102451Y0Q0.31730G204G205A206A207A208C209cWWtSH
211892QBG0.31760U2356G2357A2358C2359G2360G2361cWWntSH
212107488D0.31900C154G31U32A33A34G164cWWntSH
213108488D0.31900C154G31U32A33A34G164cWWntSH
2142614W230.31980A1353G1354C1355G1356A1357U1358cWWntSH
2151574W230.31980C539U540U541U542C543G544cWWntSH
216664A1B0.32120U356G357C358G359A360A361cWWntSH
2172741Y0Q0.32320A21G22U23A24A25U26cWWntSH
218953U5H0.32400U707G708A709A710A711G712cWWntSH
219581S720.32530C2629G2630U2631G2632A2633G2634cWWntSH
220184A1B0.32580G1658G1659U1660A1661A1662C1663cWWntSH
221173U5F0.32680A1296G1297U1298G1299A1300U1301cWWntSH
2221674R0D0.32700U481G482A483A484A485G486cWWtSH
223964CUV0.32730U707G708A709A710A711G712cWWntSH
2241121Y0Q0.32770C130G131A132U133A134G135cWWtSH
225623W3S0.32810C47G47C47A47A47G47cWWcWWcWWntSHntSHcWWntHSntHS
2262634IOA0.32890G2353G2354A2355A2356A2357C2358cWWtSH
227484R0D0.33020A87G88U89A90A91U92cWW
2281094R0D0.33400A600G601A602G603A604U605cWWntSH
229534IOA0.33420C2573G2574U2575G2576A2577G2578cWWtSH
2303254A1B0.33461G1153G1154U1155A1156A1157C1159cWWntSH
231651S720.33470U468G469U470G471A472A473cWWntSH
232604CUV0.33630C2963G2964U2965G2966A2967G2968cWWntSH
233524A1B0.33650C2951G2952U2953G2954A2955G2956cWWntSH
2343184W210.33850G1178U1179C1180C1181C1182C1183cWWntSH
235764QCN0.33940C1268G1269C1270G1271A1272G1273cWWntSH
236884C7O0.34360C19G20G21A22A23G24cWWntSH
237364L810.34380C76G77A78G79A80G81cWWntSH
238204CUV0.34430G1634G1635U1636A1637A1638C1639cWWntSH
239641VX60.34430C365G366U367G368A369G370cWWntSH
240142HO70.34510G113G114C115G116A117C118cWWntSH
241632BTE0.34820C46G47C47A47A47G47cWWntSHntSHcWWntHSntHS
242342AW70.35330C726G727A728A729G730G731cWWntSH
243221VX60.35360G1783G1784U1785A1786A1787C1788cWWntSH
2442804W210.35540G1561G1562A1563A1564A1565C1566cWWtSH
245794PQV0.35610C13G14A15A16A17G18cWWtSH
246694LVZ0.35730C58G59A60G61A62G63cWWntSH
247974IOA0.35760U1856G1857C1858A1859A1860G1861cWWntSH
248561VX60.35850C1551G1552U1553G1554A1555G1556cWWntSH
249164BPP0.35900A1268G1269U1270G1271A1272U1273cWWntSH
250213U5H0.35930G1634G1635U1636A1637A1638C1639cWWntSH
2511564W230.36020U197U198C199G200C201G202cWWntSH
2521551VW30.36130U1773U1774A1775A1776C1777G1778cWWntSH
253454W210.36140C368G369U370A371A372G373cWWntSH
2543144IOA0.36190C146G147C148A149A150G151cWWntSH
255393U5F0.36240C937G938A939A940A941G942cWWntSH
256554QCN0.36290C2866G2867C2868G2869A2870G2871cWWntSH
2572934R0D0.36310G369G370A371A372A373C374ntSHcWWtSH
258672AW70.36870U1076G1077U1078G1079A1080A1081cWWntSH
259994IOA0.36950C88G89C90A91G92G93cWWntSH
260542AW70.37630C1265G1266C1267G1268A1269G1270cWWntSH
2613174W230.37920A1421G1422C1423G1424G1425U1426ntWHcWWntSH
262351G1X0.38070C726G727A728A729G730G731cWWntSH
263404CUX0.38380C937G938A939A940A941G942cWWntSH
264813ADC0.38480C47G47A47G47U47G47cWWcWWntHScWWntSHntHSntHS
265153Q1Q0.38490G187G188C189A190A191C192tSHcWWntSH
2663271X8W0.38550G234G235A236G237A238C240cWWntSH
267841FJG0.38890C1076G1077U1078G1079A1080G1081cWWntSH
268331FJG0.39540C726G727A728A729G730G731cWWntSH
269681Q960.39770U13G14A15G16A17A18cWWtSH
27044KQY0.40190C60G61A62A63A64G65cWWtSH
2711224W210.41150C2458G2459A2460G2461C2462G2463cWW
272822BTE0.41190C46G47C47A47A47G47cWWntSHntSHcWWntHSntHS
273834CUV0.41900C1403G1404U1405A1406A1407G1408cWWntSH
274803NPN0.41900C20G21A22A23A24G25cWWntSH
275853U5H0.41920C1403G1404U1405A1406A1407G1408cWWntSH
27664CUV0.41980G844G845A846A847A848C849cWWntSH
2773282OIU0.41980C28G29A30A31A32G33cWWtSHncSW
2782754W210.42180A3724G3725A3726A3727A3728U3729cWWntSHntSH
2791414A1B0.42820U2160C2161A2162A2163C2164A2165cWW
280871S720.43570U1326G1327A1328A1329A1330A1331cWWntSH
28194CUV0.44080G1544A1545A1546G1547C1548U1549cWW
2821231U6B0.44720C153A154A155A156C157G158cWW
2831214QK90.44950C14U15G16A17A18G19cWW
28483U5H0.46070G1544A1545A1546G1547C1548U1549cWW
285864A1B0.46360C1429G1430U1431G1432A1433G1434cWWntSH
2861504QCN0.46570C1409G1410A1411A1412A1413G1414cWWntSH
287321JID0.46820G146G147G148A149G150C151cWW
2882393AM10.46870C32U33U34C35G36G37cWW
2891472AW70.47060G1515G1516G1517A1518A1519C1520cWW
2901492QBG0.47510C1363G1364A1365A1366A1367G1368cWWntSH
291434W210.47680G2578G2579U2580A2581A2582C2583cWWntSH
2923261S720.47951G1468C1469A1470A1471C1472C1474cWWntWH
29351VX60.49320C963G964A965A966A967G968cWWntSH
294311MFQ0.49640G146G147G148A149G150C151cWW
2951401FJG0.50080C522A523G524C525C526G527cWW
2961293J7A0.50620C1797G1798A1799A1800A1801G1802cWWtSH
2971284W230.50830C1565G1566G1567C1568A1569G1570cWWtSH
2981244CUX0.51321G154U155A156A157U158C160tSHcWW
2991423J7A0.51380G2070U2071G2072A2073A2074C2075cWW
30074W210.52020G2705G2706U2707U2708C2709C2710cWW
3011373U5H0.52290A1760C1761C1762U1763U1764U1765cWWncSW
302444W210.52390C2317G2318C2319G2320G2321G2322cWWntSH
3031392AW70.52990C522A523G524C525C526G527cWW
3041253U5F0.53451G154U155A156A157U158C160tSHcWW
3051463U5F0.54000G1778U1779G1780A1781A1782C1783cWW
306301M5O0.55030G74G75A76A77A78C79tSHncWSntSH
3071303U5F0.55580C1501G1502A1503G1504A1505G1506cWWtSH
308412QBG0.56710U1222G1223U1224G1225A1226G1227cWWtSH
3091444CUX0.56740G1778U1779G1780A1781A1782C1783cWW
31022AW70.56750C379G380C381A382A383G384cWWtSH
3111514IOA0.56900C1376G1377A1378A1379C1380G1381cWW
3121533J7A0.58180U374U375A376G377A378G379cWW
3131481FJG0.58280C1515G1516G1517A1518A1519G1520cWW
3141323J7A0.58620C576A577G578C579C580G581cWW
3151314CUX0.59990C1501G1502A1503G1504A1505G1506cWWtSH
3161343U5F0.60590C569A570G571C572C573G574cWWntSH
3171334BPP0.61230C563A564G565C566C567G568cWWntSH
3181434BPP0.62520G1731U1732G1733A1734A1735C1736cWW
3191384BPP0.63090U359U360A361G362G363G364cWW
3201521VW30.63180A1384U1385A1386A1387A1388U1389cWW
321424IOA0.63470C1235G1236G1237A1238A1239G1240cWW
3221454W230.64180G1847U1848G1849A1850A1851C1852cWWntSH
32332QBG0.64220C1806G1807A1808A1809A1810G1811cWWtSH
32412QBG0.65850C1868G1869C1870A1871A1872G1873cWWtSH
3251354CUX0.66040C569A570G571C572C573G574cWWntSH
3261264BPP0.66861C148U149A150A151U152G154cWWperp
3271363Q1Q0.67710A29C30A31C32C33U34cWWncSW
3281271VX60.72620U801U802A803A804U805G806cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG56
GGAAAC32
CGCAAG22
CGUGAG16
CGAGAG15
UGAAAG14
AGAAAU12
CGUAAG11
UGAAAA10
GGUAAC9
CGGAAG6
CAGCCG6
GGUGAC5
CGCGAG5
GGUAAGC5
GGAGAC5
GUGAAC5
CUAACG4
AGUGAU4
AGCAAU3
AGUAAU3
GGCGAC3
GGCAAC3
CGAAGG3
UGUGAA3
CGGGAG3
GGGAGC2
UGAGAA2
UGCAAG2
UGAGAG2
GUAAUUC2
GAAGCU2
AGCGAU2
AGAGAU2
AGAAAGU2
GCAACUC1
CGAGUG1
CGAGCG1
CUUCGG1
UCAACA1
CUGAAG1
CAAACG1
GGGAAC1
AGCGGU1
UUAGGG1
UUAGAG1
AUAAAU1
CUAAUUG1
ACACCU1
CGAACG1
UGUGAG1
UUAAUG1
GGUUCC1
ACCUUU1
CGCGGG1
CGGCAG1
UUCGCG1
AGCUAACU1
UGGGAA1
GAAAAGC1
UGCAAA1
GGGGAC1
CGAUAAGG1
CGAAAUG1
CGGAACG1
CGAUAACG1
ACAACU1
UGAAGA1
AGGAAU1
CCAAAG1
GUCCCC1
CGAUAG1
AAAAAU1
CUCACG1
UUAACG1
UGCGAA1
CUUUCG1
UUAGCG1
UGCUAACG1
CGUAGG1
UGACGG1
CGCAGG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA124
GCAA31
GUGA29
GAGA26
GUAA23
GCGA11
GGAA8
UGAA6
AGCC6
GGGA5
GUAAG5
UAAC5
GAAG4
UAAUU3
GCUAAC2
GGAG2
GAAAG2
GCGG2
CAAC2
AAGC2
UUCG1
CAACU1
UAAU1
CACC1
AAAC1
UAGG1
CCUU1
GAAC1
GUUC1
UAGA1
GGCA1
UAAA1
GACG1
UCAC1
GAAAU1
GAUAAG1
GGAAC1
GAUAAC1
AAAA1
CAAA1
AAAAG1
UAGC1
UCGC1
GCAG1
GAGU1
UCCC1
GAUA1
GUAG1
UUUC1
GAGC1

Release history

Release1.18
Date2014-10-09
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_67042.17Only in the parent motif
HL_67042.16
Compare
HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_4CUV_013, HL_3J7A_013, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_1VW3_049, HL_1KH6_002, HL_488D_002, HL_4A1C_006, HL_4CUV_030, HL_1VX6_071, HL_4QCN_026, HL_4B5R_002, HL_4B5R_003, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_4K27_001, HL_2OIU_005, HL_4FAW_003, HL_4CUV_025, HL_4QK9_002, HL_4IOA_068, HL_4CUX_037, HL_4CUV_023, HL_4IOA_062, HL_4IOA_063, HL_2AW7_022, HL_3U5H_033, HL_3NPN_001, HL_3J7A_007, HL_3CUN_001, HL_3J7A_002, HL_3W3S_003, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1FJG_007, HL_1HMH_001, HL_1VX6_065, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2AW7_003, HL_4BPP_015, HL_3KTW_002, HL_1S72_045, HL_2QBG_028, HL_1S72_048, HL_4CUV_036, HL_3IAB_001, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_4KQY_002, HL_4CUV_033, HL_2AW7_013, HL_4QCN_033, HL_4IOA_015, HL_1FJG_028, HL_2AW7_016, HL_1Q96_001, HL_1MFQ_001, HL_1MFQ_002, HL_3NKB_002, HL_1FJG_019, HL_3U5H_013, HL_1VX6_059, HL_1VW3_027, HL_4PLX_001, HL_1VW3_055, HL_4PLX_003, HL_3SUX_002, HL_1U9S_002, HL_2QBG_036, HL_4BPP_024, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_4CUV_048, HL_4CUV_047, HL_4CUX_025, HL_3U5H_039, HL_4BPP_028, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_1S72_017, HL_3MOJ_001, HL_2EZ6_002, HL_4IOA_005, HL_4QCN_045, HL_4QCN_044, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_4BPP_003, HL_3UCZ_001, HL_2EZ6_001, HL_4CUV_060, HL_4QCN_015, HL_4BW0_001, HL_1FJG_024, HL_3GX5_002, HL_2ZZM_003, HL_4A1B_046, HL_1VX6_047, HL_4BPP_032, HL_3U5H_011, HL_4BPP_036, HL_1VW3_018, HL_3U5H_010, HL_4P8Z_003, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_4P8Z_005, HL_3GX5_003, HL_3E5C_001, HL_4JF2_001, HL_1Q96_003, HL_4P9R_004, HL_4IOA_030, HL_4IOA_033, HL_2QBZ_001, HL_1FJG_003, HL_4FAW_006, HL_4QK8_001, HL_4QCN_056, HL_2BTE_007, HL_2QBG_016, HL_3T4B_001, HL_2AW7_032, HL_488D_001, HL_1VW3_009, HL_4IOA_057, HL_4AOB_003, HL_4AOB_002, HL_4FNJ_001, HL_4PQV_001, HL_1VX6_035, HL_4QCN_030, HL_3ADC_003, HL_1JID_001, HL_3U5H_065, HL_1S72_015, HL_1S72_028, HL_4IOA_070, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_4CUV_065, HL_2HO7_004, HL_3U5F_015, HL_4CUV_066, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_4QCN_061, HL_4IOA_026, HL_1Y0Q_007, HL_1Y0Q_004, HL_4QCN_062, HL_1Y0Q_003, HL_4QCN_067, HL_1Y0Q_001, HL_4QCN_069, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_4QCN_019, HL_4L81_001, HL_1GID_004, HL_4L81_003, HL_4L81_004, HL_2AW7_024, HL_4A1B_029, HL_3U5H_019, HL_4A1B_026, HL_1VW3_034, HL_1U6B_004, HL_1U6B_001, HL_4A1B_020, HL_4BPP_009, HL_4UN3_003, HL_3AM1_003, HL_2PXV_001, HL_2NZ4_012, HL_3DVZ_001, HL_1VX6_029, HL_4GMA_004, HL_4CUV_074, HL_3U5F_003, HL_2IL9_003, HL_1S72_070, HL_1S72_009, HL_1S72_023, HL_4C7O_001, HL_2QBG_065, HL_4CUX_026, HL_4UN5_001, HL_3Q1Q_008, HL_4CUX_022, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_1VX6_010, HL_3J7A_019, HL_4QCN_014, HL_3P22_005, HL_3P22_007, HL_1VX6_011, HL_4A1B_035, HL_2NZ4_016, HL_1VX6_017, HL_1RLG_002, HL_3V7E_006, HL_4UN5_003, HL_3J7A_034, HL_3J7A_030, HL_4K50_001, HL_4OO8_001, HL_4K50_003, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_4IOA_014, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_4IOA_046, HL_3U5F_033, HL_4A1B_059, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_4P9R_006, HL_1NBS_007, HL_4CUV_011, HL_4FRG_002, HL_4CUX_033, HL_3U5F_026, HL_4OO8_003, HL_4LVZ_002, HL_4BPP_025, HL_1U9S_004, HL_1VX6_032, HL_1VW3_054, HL_1S72_036, HL_3D0U_004, HL_4IOA_019, HL_1G1X_001, HL_1FJG_016, HL_3J7A_021, HL_3J7A_022, HL_4CUV_019, HL_3U5F_022, HL_4BPP_021, HL_3U5H_066, HL_3U5H_060, HL_2QBG_049, HL_3U5H_036, HL_1VX6_064, HL_2QBG_048, HL_4CUX_015, HL_1VX6_025, HL_1S72_060, HL_4QK9_001, HL_4CUX_003, HL_1S72_065, HL_1S72_066, HL_2QBG_060, HL_4CUV_010, HL_1G1X_003, HL_2AW7_010, HL_4CUV_016, HL_4CUV_017, HL_1VX6_020, HL_4A1B_064HL_4W23_028, HL_4W23_026, HL_4W23_023, HL_4W23_022, HL_4R0D_014, HL_4R0D_015, HL_4W21_019, HL_4R0D_012, HL_4W21_012, HL_4W21_010, HL_4W21_011, HL_4W21_072, HL_4W21_059, HL_4W21_030, HL_4W21_033, HL_4W21_037, HL_4W23_030, HL_4W23_034, HL_4W23_012, HL_4W23_004, HL_4TZZ_009, HL_4W21_040, HL_4R0D_005, HL_4R0D_003, HL_4W21_048, HL_4W21_065, HL_4W21_064, HL_4TZZ_004, HL_4R0D_009, HL_4R0D_008HL_1VWW_019, HL_4LCK_004, HL_1VWW_011, HL_1VWW_010, HL_1VWW_012, HL_1VWW_037, HL_1VWW_033, HL_1VWW_030, HL_1VWW_072, HL_1VX2_008, HL_1VX2_004, HL_1VX2_022, HL_1VX2_023, HL_1VX2_025, HL_1VX2_027, HL_1VX2_029, HL_1VWW_040, HL_1VWW_048, HL_1VWW_064, HL_1VWW_065, HL_1VX2_033, HL_1VX2_014, HL_1VX2_012

Children motifs

This motif has no children motifs.