#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc#Non-coreAnnotation 1 2 3 4 5 61-41-51-62-42-52-63-6
22013Q1Q0.59870 G37C38A39C40C41C42cWWntWHntWH
21722XZM0.57910 A1660G1661C1662A1663A1664U1665cWW
20533U5H0.52290 A1760C1761C1762U1763U1764U1765cWW
19643AM10.46870 C32U33U34C35G36G37cWW
21654A1B0.57080 U2531G2532C2533A2534A2535A2536cWWtSH
20462XZM0.51300 A226G227C228A229A230U231cWWntSH
17971X8W0.38550 G234G235A236G237A238C240cWWntSH
18882OIU0.41980 C28G29A30A31A32G33cWWtSHncSW
20191S720.47951 G1468C1469A1470A1471C1472C1474cWWntWH
133102QBG0.30022 U955G956C957A959A960G962cWWtSH
69113V2F0.22622 C955G956A957A959A960G962cWWtSH
146122ZJR0.31682 A966G967C968A970A971U973cWWtSH
161134A1B0.33461 G1153G1154U1155A1156A1157C1159cWWntSH
134143U5H0.30051 G1126G1127U1128A1129A1130C1132cWWtSH
66151S720.22561 G1054G1055U1056A1057A1058C1060cWWtSH
125164A1B0.28940 A582G583C584A585A586U587cWWtSH
67174A1B0.22620 C757G758C759A760A761G762cWWtSH
95182ZJR0.24950 C498G499G500G501A502G503cWWtSH
74193U5H0.23090 C732G733C734A735A736G737cWWntSH
85201S720.23930 C252U253C254A255C256G257cWWntSH
14213AM10.14140GNRAC45G46A47G48A49G50cWWtSH
29221S720.16330 C89G90C91G92A93G94cWWntSH
18233DVZ0.14900 C2658G2659A2660G2661A2662G2663cWWtSH
9241S720.13070 C2248G2249G2250G2251A2252G2253cWWtSH
27251Q960.15930GNRAU13G14A15G16A17A18cWWntSH
43262PXV0.18440 C153G154A155A156A157G158cWWtSH
35274A1B0.17170 C3014G3015A3016G3017A3018G3019cWWtSH
25281S720.15700 C2695G2696A2697G2698A2699G2700cWWtSH
19293V2F0.14910 C2658G2659A2660G2661A2662G2663cWWtSH
16303U5H0.14700 C3025G3026A3027G3028A3029G3030cWWtSH
49312QBG0.20090 C2658G2659A2660G2661A2662G2663cWWtSH
46323KTW0.19670GNRAC209G210G211A212A213G214cWWntSH
48332ZJR0.20080 C2637G2638A2639G2640A2641G2642cWWtSH
47341LNG0.19860 C208G209G210A211A212G213cWWtSH
37352OIU0.17220 C28G29A30A31A32G33cWWtSHncSW
32362AW70.16830 C186G187C188A189A190G191cWWtSH
11372OIU0.13510GNRAC10G11A12A13A14G15cWWtSH
17382OIU0.14820 C10G11A12A13A14G15cWWtSH
8391S720.12930 C804G805A806A807A808G809cWWtSH
13401G1X0.14120GNRAC590G591A592A593A594G649cWWtSH
3411RLG0.10590GNRAC9G10A11A12A13G14cWWntSH
4421HMH0.10950 C104G21^LA22^LA23^LA24^LG114cSScWWtSHntWS
2433U5H0.08800 U382G383A384A385A386A387cWWtSH
1444A1B0.00000 U381G382A383A384A385A386cWWtSH
12453V2F0.13760 C1806G1807U1808A1809A1810G1811cWWtSH
33461MZP0.16980GNRAC25G26C27A28A29G30cWWtSH
36472EZ60.17190GNRAC11G12C13A14A15G16cWWtSH
21482EZ60.14990 C11G12C13A14A15G16cWWtSH
81493CUN0.23380 C7G8A9A10A11G12cWWtSH
42503V2F0.18190 C487G488G489G491A492G493cWWtSH
62513P220.22460 C17G18A19A20A21G22ncSScWWtSH
75523P220.23090 C17G18A19A20A21G22ncSScWWtSH
23532OIU0.15570 C59G60A61A62A63G64cWWtSH
22541HMH0.15370 C104G21^LA22^LA23^LA24^LG114cSScWWtSHntWS
31551FJG0.16600 C1165G1166A1167A1168A1169G1171cWWtSH
20561KH60.14990GNRAC28G29A30A31A32G33cWWtSHncSW
28574FRG0.15970GNRAC46G47A48A49A50G51cWWtSH
15584GMA0.14150 C119G120A121A122A123G124cWWtSH
40592IL90.17770GNRAC6119G6119^AA6119^BA6119^CA6119^DG6119^EncWWtSH
51601KXK0.20690GNRAU33G34A35A36A37G38cWWtSH
53614FNJ0.20840 U16G17A18A19A20G21cWWtSH
106621FJG0.26420 U296G297A298G299A300G301cWWtSH
65632AW70.22510 U296G297A298G299A300G301cWWtSH
131643RG50.29960 U47^CU47^DA47^EG47^FC47^GG47^HcWWntSH
145651FJG0.31630 U1012G1013A1014A1015A1016G1017cWWntSH
63663D0U0.22480GNRAC142G143A144A145A146G147cWWtSH
92673U5H0.24621 A2164G2165A2166A2167A2168U2170cWWtSH
64682QBZ0.22510 C68C69A70A71A72G73cWWntSH
76692XXA0.23180 C47G48G49A50A51G52cWWtSH
78701FJG0.23330 C862U863A864A865C866G867cWWntSHntSH
44712AW70.18570 C862U863A864A865C866G867cWWntSHntSH
89722Y9B0.24320 U812G813A814A815A816A817cWWntSHntSH
59733SUX0.22040GNRAC65G66A67A68A69G70cWWntSH
5743NVI0.12570 C9G10A11A12A13G14cWWntSH
10754ENB0.13430 U28G29A30A31A32A33cWWtSH
6763UCZ0.12780 C31G32A33A34A35G36cWWtSH
7773IWN0.12810GNRAC21G22A23A24A25G26cWWntSH
34783U5F0.17140 C1121G1122C1123A1124A1125G1126cWWtSH
26791FJG0.15880 C897G898C899A900A901G902cWWtSH
55801S720.21320 C1862G1863C1864A1865A1866G1867cWWtSH
68812AW70.22620 C897G898C899A900A901G902cWWtSH
102822Y9B0.25950 G850G851U852A853A854C855cWWtSH
120831X8W0.28210 C322G323A324A325A326G327cWWtSH
153841Y0Q0.32320 A21G22U23A24A25U26cWWntSH
119852XZM0.28040 A1056G1057A1058A1059A1060U1061cWWntSH
57863U5F0.21440 A1084G1085A1086A1087A1088U1089cWWntSH
97873U5H0.25380 A2220G2221A2222A2223A2224U2225cWWntSH
72882AW70.22970 A1012G1013A1014G1015A1016U1017cWWntSH
94893T4B0.24710 G9G10A11A12A13C14cWWntSH
109901NBS0.26850GNRAA204G205A206A207A208U209cWWtSH
61913V7E0.22170 G305G306A307A308A309C310cWWtSH
83921U6B0.23890GNRAG23G24A25A26A27C28cWWtSH
73934FAW0.23010 G274G275A276A277A278C279cWWtSH
82943GX50.23700 G73G74A75A76A77C78cWWtSH
58954AOB0.21550GNRAG73G74A75A76A77C78cWWtSH
86961GID0.24100 G149G150A151A152A153C154cWWntSHntSH
90971GID0.24390 G149G150A151A152A153C154cWWntSHntSH
56984B5R0.21340 G73G74A75A76A77C78cWWtSH
52993Q1Q0.20710 G135G136A137A138A139C140cWWtSH
1041003MOJ0.26200GNRAG2529G2530A2531A2532A2533C2534cWWtSH
791013U5H0.23360 G844G845A846A847A848C849cWWtSH
1211023RW60.28230GNRAG27G28A29A30A31C32cWWtSH
1241032AW70.28600 G158G159A160A161A162C163cWWtSH
1221043IAB0.28420 G78G79A80A81A82C83cWWtSH
981051S720.25630 G690G691A692A693A694C695cWWtSH
1031063E5C0.26050GNRAG18G19A20A21A22C23tSHcWWtSH
1111071S720.27010 G2876G2877U2878A2879A2880C2881cWWtSH
711084A1C0.22930 G86G87G88G89A90C91cWWtSH
1131091MFQ0.27150GNRAG197G198A199A200A201C202cWWtSH
911103U5H0.24390 G88G89U90G91A92C93cWWtSH
541114AOB0.21100GNRAA49A50A51A52A53U54cWWtSH
301123GX50.16350 A49G50A51A52A53U54cWWntSH
501134B5R0.20420 A49G50A51A52A53U54cWWntSH
451141UN60.18990GNRAG82G83A84A85A86C94cWWntSH
1121151U9S0.27020GNRAG99G100U101A102A103C104cWWntSH
1051161X8W0.26210 G149G150A151A152A153C154cWWntSHntSH
1001171S720.25870 G1628G1629A1630A1631A1632C1633cWWtSH
991181FJG0.25690 G158G159A160A161A162C163cWWtSH
1011194A1B0.25880 G869G870A871A872A873C874cWWtSH
1471201Y0Q0.31730 G204G205A206A207A208C209cWWtSH
1151212ZJR0.27550 C146G147C148A149A150G151cWWtSH
2071222XZM0.52620 C1094G1095C1096A1097A1098G1099cWWntSS
2241232QBG0.65850 C1868G1869C1870A1871A1872G1873cWWtSH
2151242AW70.56750 C379G380C381A382A383G384cWWtSH
2231252QBG0.64220 C1806G1807A1808A1809A1810G1811cWWtSH
1841263NPB0.40950 C60G61A62A63A64G65cWWtSH
2111271M5O0.55030 G74G75A76A77A78C79tSHncWSntSH
1931283U5H0.46070 G1544A1545A1546G1547C1548U1549cWW
1141292QBG0.27200 A2856G2857C2858G2859A2860U2861cWWntSH
801302QBG0.23380 G629G630A631A632A633C634cWWntSH
841311U9S0.23910GNRAG204G205C206A207A208C209cWWtSH
701323V2F0.22700 G629G630A631A632A633C634cWWntSH
1101332ZJR0.26870 A2831G2832C2833A2834A2835U2836cWWntSH
1081343Q1Q0.26770 G284G285U286A287A288C289cWWntSH
1281351Y0Q0.29230 A101G102U103A104A105U106cWWtSH
1781363Q1Q0.38490 G187G188C189A190A191C192tSHcWWntSH
1391373Q1Q0.30660 G92G93U94G95A96C97cWWntSH
1371381FJG0.30420 G1265G1266C1267A1268A1269C1270cWWntSH
1431394FAW0.30850 G89G90C91G92A93C94ntSHcWWntSH
1671402HO70.34510 G113G114C115G116A117C118cWWntSH
1291413U5H0.29490 A357G358U359G360A361U362cWWntSH
1351422NZ40.30130 G108G109U110G111A112C113cWWntSH
961432NZ40.25290 G108G109U110G111A112C113cWWntSH
1711443U5H0.35930 G1634G1635U1636A1637A1638C1639cWWntSH
1561454A1B0.32580 G1658G1659U1660A1661A1662C1663cWWntSH
1571463U5F0.32680 A1296G1297U1298G1299A1300U1301cWWntSH
1811472XZM0.38940 A1268G1269U1270G1271A1272U1273cWWntSH
1511483V2F0.31980 G86G87C88G89A90C91cWWtSH
1731492ZJR0.36360 G2353G2354A2355A2356A2357C2358cWWntSH
1901502ZJR0.43420 C88G89C90A91G92G93cWWntSH
149151488D0.31900 C154G31^LU32^LA33^LA34^LG164cWWntSH
150152488D0.31900 C154G31^LU32^LA33^LA34^LG164cWWntSH
1361532ZZM0.30350GNRAC47G47^AU47^BA47^CG47^DG47^EcWWntSH
1681543V2F0.34780 U1864G1865C1866A1876A1877G1878cWWntSH
1541553U5H0.32400 U707G708A709A710A711G712cWWntSH
1261563U5H0.29070 U2744G2745A2746A2747A2748G2749cWWntSH
1231572ZJR0.28550 C640G641A642A643A644G645cWWntSH
871584A1B0.24140 C732G733A734A735A736G737cWWntSH
931591S720.24680 C2411G2412A2413A2414A2415G2416cWWntSH
1071602XZM0.26500 U1472G1473G1474G1475A1476A1477cWWntSH
391613U5H0.17690 C599G600U601A602A603G604cWWtSH
241621FJG0.15570 C379G380C381A382A383G384cWWtSH
381633V2F0.17390 C2374G2375A2376A2377A2378G2379cWWtSH
601642QBG0.22050 C2374G2375A2376A2377A2378G2379cWWtSH
411654A1B0.17870 C2733G2734A2735A2736A2737G2738cWWntSH
881662ZJR0.24210 U1856G1857C1858A1859A1860G1861cWWntSH
771671S720.23271 C1793G1794G1795A1796A1797G1799cWWntSH
1581681Y0Q0.32770 C130G131A132U133A134G135cWWtSH
1821691FJG0.39540 C726G727A728A729G730G731cWWntSH
1761701G1X0.38070 C726G727A728A729G730G731cWWntSH
1701712AW70.35330 C726G727A728A729G730G731cWWntSH
1721723U5F0.36240 C937G938A939A940A941G942cWWntSH
1301732XZM0.29720 C915G916A917A918A919G920cWWntSH
1481742QBG0.31760 U2356G2357A2358C2359G2360G2361cWWntSH
1421753E5C0.30840GNRAC41G42A43A44A45G46cWWntSH
1171762OIU0.27870GNRAC59G60A61A62A63G64cWWtSH
1401773NKB0.30690GNRAC49G50A51A52A53G54cWWntSH
1661783V2F0.34450 C1222G1223C1224G1225A1226G1227cWWntSH
1601792ZJR0.32940 C473G474U475G476A477G478cWWntSH
1641803SD30.33780 C58G59A60G61A62G63cWWntSH
1691812BTE0.34820 C46G47C47^AA47^BA47^CG47^DcWWntSH
1591823W3S0.32810GNRAC47^FG47^GC47^HA47^IA47^JG47^KcWWntSH
1411833V2F0.30830 C2594G2595U2596G2597A2598G2599cWWtSH
1631844A1B0.33650 C2951G2952U2953G2954A2955G2956cWWntSH
1321852ZJR0.30010 C2573G2574U2575G2576A2577G2578cWWtSH
1161862QBG0.27680 C462G463U464G465A466G467cWWntSH
1181873V2F0.27910 C462G463U464G465A466G467cWWntSH
1441881S720.31410 C576G577C578G579A580G581cWWntSH
1271893U5H0.29160 C2963G2964U2965G2966A2967G2968cWWntSH
1551901S720.32530 C2629G2630U2631G2632A2633G2634cWWntSH
1651913V2F0.33800 C2856G2857C2858G2859A2860G2861cWWntSH
1381922QBG0.30640 C2594G2595U2596G2597A2598G2599cWWtSH
1751932AW70.37630 C1265G1266C1267G1268A1269G1270cWWntSH
1741942AW70.36870 U1076G1077U1078G1079A1080A1081cWWntSH
1621951S720.33470 U468G469U470G471A472A473cWWntSH
1521964A1B0.32120 U356G357C358G359A360A361cWWntSH
1831971Q960.39770 U13G14A15G16A17A18cWWntSH
1851982BTE0.41190GNRAC46G47C47^AA47^BA47^CG47^DcWWntSH
1801991FJG0.38890 C1076G1077U1078G1079A1080G1081cWWntSH
1872003U5H0.41920 C1403G1404U1405A1406A1407G1408cWWntSH
1942014A1B0.46360 C1429G1430U1431G1432A1433G1434cWWntSH
1912021S720.43570 U1326G1327A1328A1329A1330A1331cWWntSH
1772033ADC0.38480 C47^DG47^EA47^FG47^GU47^HG47^IcWW
1922041U6B0.44720 C153A154A155A156C157G158cWW
2092053U5F0.53451 G154U155A156A157U158C160tSHcWW
2132062XZM0.56300 G1731U1732G1733A1734A1735C1736cWW
2102073U5F0.54000 G1778U1779G1780A1781A1782C1783cWW
1972082AW70.47060 G1515G1516G1517A1518A1519C1520cWW
2182091FJG0.58280 C1515G1516G1517A1518A1519G1520cWW
1992103V2F0.47670 C1363G1364A1365A1366A1367G1368cWWntSH
1982112QBG0.47510 C1363G1364A1365A1366A1367G1368cWWntSH
2192122ZJR0.59480 C1376G1377A1378A1379C1380G1381cWW
1862133NPN0.41900 C20G21A22A23A24G25cWWntSH
2222142ZJR0.60840 C1235G1236G1237A1238A1239G1240cWW
2142152QBG0.56710 U1222G1223U1224G1225A1226G1227cWWntSH
2002162XZM0.47700 U359U360A361G362G363G364cWW
2032171FJG0.50080 C522A523G524C525C526G527cWW
2082182AW70.52990 C522A523G524C525C526G527cWW
1892194A1B0.42820 U2160C2161A2162A2163C2164A2165cWW
1952201JID0.46820 G146G147G148A149G150C151cWW
2022211MFQ0.49640 G146G147G148A149G150C151cWW
2062222XZM0.52590 C563A564G565C566C567G568cWW
2212233U5F0.60590 C569A570G571C572C573G574cWW
2122243U5F0.55580 C1501G1502A1503G1504A1505G1506cWWtSH
2252253Q1Q0.67710 A29C30A31C32C33U34cWWncSW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG41
GGAAAC28
CGCAAG18
CGUGAG11
CGAGAG10
AGAAAU6
GGUAAC6
CGCGAG5
CGGAAG5
CGUAAG5
UGAAAG5
UGAAAA5
GGUGAC4
AGCAAU4
CAGCCG4
CGGGAG3
GGCGAC3
AGUGAU3
CGAAGG3
GGCAAC3
GGUAAGC3
UGCAAG2
AGUAAU2
UGUGAA2
CUAACG2
UGAGAG2
UGAGAA2
GGGAGC2
GUGAAC2
UUAGGG1
UCAACA1
CGAUAG1
ACACCU1
CGGAACG1
UGUGAG1
CGAACG1
UGGGAA1
GUAAUUC1
CGAGUG1
UGCGAA1
CAAACG1
GGGAAC1
UGACGG1
GGGGAC1
CGAUAACG1
AGCUAACU1
CUCACG1
UGCUAACG1
GCAACUC1
CUUCGG1
UGCAAA1
GGAGAC1
UUAGCG1
AGAAAGU1
GAAGCU1
AGCGAU1
CGCAGG1
AAAAAU1
ACCUUU1
CCAAAG1
AGAGAU1
GCACCC1
CGUAGG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA85
GCAA28
GUGA21
GAGA16
GUAA13
GCGA10
GGAA6
GGGA5
AGCC4
GAAG3
GUAAG3
UGAA2
GGAG2
CACC2
UAAC2
GCUAAC2
UAAUU1
AAAC1
GAGU1
GACG1
CAACU1
GAAC1
CCUU1
CAAC1
UUCG1
UAGG1
GAUA1
GAUAAC1
UCAC1
CAAA1
GAAAG1
AAAA1
AAGC1
GGAAC1
GUAG1
GCAG1
UAGC1

Release history

Release1.0
Date2013-03-04
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_67042.4Only in the parent motif
HL_67042.3
Compare
HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_2XZM_005, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_4A1B_059, HL_4A1C_006, HL_2ZJR_019, HL_3V2F_015, HL_2ZJR_014, HL_2ZJR_015, HL_2XZM_009, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_2QBG_016, HL_3V2F_016, HL_4FAW_003, HL_4AOB_003, HL_3E5C_001, HL_2XZM_031, HL_2XZM_035, HL_2XZM_034, HL_2ZJR_069, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1HMH_001, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2EZ6_001, HL_3KTW_002, HL_1S72_045, HL_2ZJR_062, HL_2ZJR_061, HL_2ZJR_067, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_2QBG_028, HL_2AW7_013, HL_1FJG_028, HL_1S72_048, HL_1Q96_001, HL_2XZM_027, HL_1MFQ_002, HL_3NKB_002, HL_2XZM_023, HL_2XZM_020, HL_3U5H_013, HL_3SD3_002, HL_3SUX_002, HL_1U9S_002, HL_3U5H_033, HL_1S72_036, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_3U5H_039, HL_1S72_070, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_3MOJ_001, HL_2EZ6_002, HL_2AW7_003, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_3UCZ_001, HL_1FJG_024, HL_3GX5_002, HL_2ZZM_003, HL_3V2F_062, HL_1FJG_019, HL_3V2F_067, HL_3V2F_069, HL_3U5H_010, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_3GX5_003, HL_1X8W_001, HL_2ZJR_047, HL_1S72_028, HL_1Q96_003, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_4FAW_006, HL_2QBG_049, HL_2BTE_007, HL_3NPN_001, HL_2AW7_032, HL_488D_001, HL_488D_002, HL_1MFQ_001, HL_4A1B_052, HL_4AOB_002, HL_2XZM_024, HL_2AW7_016, HL_3U5F_022, HL_3V2F_056, HL_3V2F_027, HL_3ADC_003, HL_1JID_001, HL_1KH6_002, HL_1S72_015, HL_1S72_017, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_2ZJR_056, HL_2HO7_004, HL_3U5F_015, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_2AW7_022, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_1GID_004, HL_3T4B_001, HL_3U5H_011, HL_4A1B_029, HL_3U5H_019, HL_4A1B_026, HL_1U6B_004, HL_3V2F_044, HL_4A1B_020, HL_1S72_009, HL_3AM1_003, HL_2PXV_001, HL_3DVZ_001, HL_4A1B_046, HL_2ZJR_026, HL_3U5F_003, HL_2IL9_003, HL_3NPB_002, HL_1S72_023, HL_2QBG_065, HL_3Q1Q_008, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_2ZJR_005, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_4FNJ_001, HL_3P22_005, HL_3P22_007, HL_4A1B_035, HL_2NZ4_016, HL_3V2F_032, HL_2NZ4_012, HL_1RLG_002, HL_3V7E_006, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_2ZJR_034, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_2ZJR_031, HL_3U5F_033, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_1NBS_007, HL_3CUN_001, HL_3Q1Q_010, HL_2OIU_005, HL_3U5F_026, HL_3IAB_001, HL_2QBG_036, HL_1U9S_004, HL_3V2F_029, HL_1G1X_003, HL_3D0U_004, HL_2XZM_015, HL_4GMA_004, HL_3V2F_020, HL_1G1X_001, HL_1FJG_016, HL_1U6B_001, HL_4FRG_002, HL_3U5H_065, HL_3U5H_066, HL_3V2F_045, HL_3U5H_060, HL_3U5H_036, HL_2QBG_048, HL_1S72_060, HL_3V2F_061, HL_1S72_065, HL_1S72_066, HL_2AW7_010, HL_4A1B_064HL_4B5R_002, HL_4B5R_003, HL_3W3S_003

Children motifs

Child motifCommon motif instancesOnly in HL_67042.4Only in the child motif
HL_67042.5
Compare
HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_4A1B_059, HL_4A1C_006, HL_3V2F_015, HL_2XZM_009, HL_4B5R_002, HL_4B5R_003, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_2QBG_016, HL_3V2F_016, HL_4FAW_003, HL_4AOB_003, HL_3E5C_001, HL_2XZM_031, HL_2XZM_035, HL_2XZM_034, HL_3W3S_003, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1HMH_001, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2AW7_003, HL_3KTW_002, HL_1S72_045, HL_3AM1_003, HL_1S72_048, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_2QBG_028, HL_2AW7_013, HL_1FJG_028, HL_2AW7_016, HL_1Q96_001, HL_2XZM_027, HL_1MFQ_002, HL_3NKB_002, HL_2XZM_023, HL_2XZM_020, HL_3U5H_013, HL_3SD3_002, HL_3SUX_002, HL_1U9S_002, HL_3U5H_033, HL_1S72_036, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_3U5H_039, HL_1S72_070, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_3MOJ_001, HL_2EZ6_002, HL_2EZ6_001, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_3UCZ_001, HL_1FJG_024, HL_3GX5_002, HL_2ZZM_003, HL_3V2F_062, HL_1FJG_019, HL_3V2F_067, HL_3V2F_069, HL_3U5H_010, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_3GX5_003, HL_1S72_028, HL_1Q96_003, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_4FAW_006, HL_2QBG_049, HL_2BTE_007, HL_3NPN_001, HL_2AW7_032, HL_488D_001, HL_488D_002, HL_1MFQ_001, HL_4A1B_052, HL_4AOB_002, HL_2XZM_024, HL_3U5F_022, HL_3V2F_056, HL_3ADC_003, HL_1JID_001, HL_1KH6_002, HL_1S72_015, HL_1S72_017, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_3U5H_011, HL_2HO7_004, HL_3U5F_015, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_2AW7_022, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_1GID_004, HL_3T4B_001, HL_4A1B_029, HL_3U5H_019, HL_4A1B_026, HL_1U6B_004, HL_1U6B_001, HL_4A1B_020, HL_1S72_009, HL_2PXV_001, HL_3DVZ_001, HL_4A1B_046, HL_4GMA_004, HL_3U5F_003, HL_2IL9_003, HL_3NPB_002, HL_1S72_023, HL_2QBG_065, HL_3Q1Q_008, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_4FNJ_001, HL_3P22_005, HL_3P22_007, HL_4A1B_035, HL_2NZ4_016, HL_3V2F_032, HL_2NZ4_012, HL_1RLG_002, HL_3V7E_006, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_3U5F_033, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_1NBS_007, HL_3CUN_001, HL_3Q1Q_010, HL_2OIU_005, HL_3U5F_026, HL_3IAB_001, HL_2QBG_036, HL_1U9S_004, HL_3V2F_029, HL_1G1X_003, HL_3D0U_004, HL_2XZM_015, HL_3V2F_027, HL_3V2F_020, HL_1G1X_001, HL_1FJG_016, HL_3V2F_044, HL_4FRG_002, HL_3U5H_065, HL_3U5H_066, HL_3V2F_045, HL_3U5H_060, HL_3U5H_036, HL_2QBG_048, HL_1S72_060, HL_3V2F_061, HL_1S72_065, HL_1S72_066, HL_2AW7_010, HL_4A1B_064HL_2ZJR_034, HL_2ZJR_026, HL_2ZJR_069, HL_2ZJR_056, HL_2ZJR_031, HL_2XZM_005, HL_2ZJR_061, HL_2ZJR_067, HL_2ZJR_019, HL_2ZJR_014, HL_2ZJR_015, HL_2ZJR_005, HL_2ZJR_047, HL_2ZJR_062HL_4IOA_057, HL_4IOA_070, HL_4IOA_046, HL_4IOA_033, HL_4IOA_026, HL_4IOA_030, HL_4IOA_068, HL_4IOA_019, HL_4IOA_005, HL_4IOA_062, HL_4IOA_063, HL_4IOA_015, HL_4IOA_014
HL_49036.2
Compare
HL_2XZM_005HL_2OIU_002, HL_2OIU_003, HL_2OIU_001, HL_3V2F_015, HL_2XZM_009, HL_4A1B_010, HL_2OIU_005, HL_1M5O_004, HL_2Y9B_002, HL_2Y9B_001, HL_4A1B_035, HL_488D_002, HL_4A1C_006, HL_2ZJR_019, HL_2OIU_006, HL_2ZJR_014, HL_2ZJR_015, HL_3U5H_060, HL_4A1B_013, HL_4B5R_002, HL_4B5R_003, HL_4ENB_002, HL_2XXA_002, HL_2OIU_004, HL_3IWN_001, HL_4FAW_006, HL_2QBG_016, HL_3V2F_016, HL_4FAW_003, HL_4A1B_052, HL_3U5F_015, HL_3U5H_016, HL_2XZM_031, HL_3Q1Q_003, HL_4A1B_017, HL_2XZM_034, HL_1Y0Q_004, HL_1S72_040, HL_3U5H_047, HL_4A1B_018, HL_4A1B_065, HL_4A1B_064, HL_1HMH_001, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_3W3S_003, HL_2EZ6_001, HL_3KTW_002, HL_1S72_045, HL_2QBG_028, HL_2ZJR_061, HL_2ZJR_067, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_1FJG_024, HL_2AW7_013, HL_2BTE_003, HL_2AW7_016, HL_2BTE_007, HL_1MFQ_001, HL_1MFQ_002, HL_2XZM_023, HL_2XZM_020, HL_1U9S_004, HL_3SD3_002, HL_3SUX_002, HL_3V2F_029, HL_3U5H_033, HL_1S72_036, HL_3U5H_030, HL_1S72_033, HL_3U5H_036, HL_3U5H_039, HL_2QBG_033, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_3Q1Q_008, HL_3MOJ_001, HL_2EZ6_002, HL_2AW7_003, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_3UCZ_001, HL_2ZJR_069, HL_3GX5_002, HL_3V2F_061, HL_3V2F_062, HL_4A1B_046, HL_3V2F_067, HL_3V2F_069, HL_2HO7_004, HL_1FJG_028, HL_1S72_020, HL_3U5H_025, HL_1S72_023, HL_2ZJR_047, HL_3E5C_001, HL_1Q96_003, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_1S72_054, HL_4A1B_011, HL_2QBG_049, HL_2QBG_048, HL_3NPN_001, HL_2AW7_032, HL_488D_001, HL_4A1B_059, HL_2XZM_027, HL_4AOB_003, HL_4AOB_002, HL_3GX5_003, HL_2XZM_024, HL_4FRG_002, HL_3V2F_056, HL_3ADC_003, HL_1JID_001, HL_3U5H_065, HL_1S72_015, HL_3U5H_066, HL_1S72_017, HL_3RG5_003, HL_3U5H_017, HL_1FJG_019, HL_2ZJR_056, HL_3U5H_010, HL_3U5H_013, HL_1FJG_013, HL_1FJG_010, HL_3P22_007, HL_3RW6_001, HL_1LNG_002, HL_2AW7_022, HL_1Y0Q_007, HL_2AW7_020, HL_1Y0Q_003, HL_2AW7_024, HL_1FJG_016, HL_2QBG_059, HL_2AW7_028, HL_1GID_004, HL_3T4B_001, HL_3U5H_011, HL_1S72_048, HL_4A1B_029, HL_1GID_001, HL_4A1B_026, HL_1KXK_001, HL_1Y0Q_001, HL_3U5F_022, HL_1U6B_001, HL_3V2F_045, HL_3AM1_003, HL_2PXV_001, HL_1S72_009, HL_2ZJR_026, HL_3U5F_003, HL_3NPB_002, HL_3NKB_002, HL_3DVZ_001, HL_2QBG_065, HL_2QBG_066, HL_2QBG_060, HL_1X8W_005, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_4FNJ_001, HL_3P22_005, HL_1UN6_004, HL_1S72_028, HL_2NZ4_016, HL_1Q96_001, HL_3V2F_032, HL_2NZ4_012, HL_1S72_065, HL_4GMA_004, HL_2ZJR_062, HL_2XZM_035, HL_3E5C_002, HL_1MZP_001, HL_3V7E_006, HL_2ZJR_034, HL_1G1X_003, HL_3U5F_037, HL_3U5H_074, HL_2ZJR_031, HL_3U5F_033, HL_1S72_072, HL_1S72_070, HL_1NBS_007, HL_3CUN_001, HL_3Q1Q_010, HL_3U5F_026, HL_3IAB_001, HL_2QBG_071, HL_2QBG_036, HL_1U6B_004, HL_1U9S_002, HL_3D0U_004, HL_2XZM_015, HL_3V2F_027, HL_3V2F_020, HL_1G1X_001, HL_3V2F_044, HL_2IL9_003, HL_1KH6_002, HL_2ZZM_003, HL_4A1B_020, HL_2ZJR_005, HL_3U5F_025, HL_1S72_060, HL_1RLG_002, HL_1S72_066, HL_2AW7_010, HL_3U5H_019HL_4IOA_045, HL_1S72_022, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_4A1B_041, HL_4IOA_004, HL_3U5H_042, HL_1S72_016
Annotations
  • GNRA (32)
  • Basepair signature
    cWW-tSH-R-R
    Intraclusteral linkage
    Min 0.01 | Avg 0.40 | Max 0.99
    Help

    Coloring options: