1 | ➜ | 3Q1Q | 0.4801 | 2 | | C | TRNA (PHE) | G | 63 | U | 64 | U | 65 | C | 66 | G | 67 | A | 68 | C | 71 | cWW | tWH | ncWW | | |
2 | ➜ | 2AKE | 0.3994 | 2 | | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
3 | ➜ | 2ZNI | 0.4454 | 2 | T-loop with 2 stacked bulged bases | C | bacterial tRNA | G | 53 | U | 54 | G | 55 | A | 56 | A | 57 | A | 58 | C | 61 | cWW | ntWH | | | |
4 | ➜ | 3VJR | 0.3486 | 2 | | D | tRNA CCA-acceptor | G | 13 | U | 14 | U | 15 | C | 16 | G | 17 | A | 18 | C | 21 | cWW | tWH | | | |
5 | ➜ | 3VJR | 0.3388 | 2 | Other HL | B | tRNA CCA-acceptor | G | 13 | U | 14 | U | 15 | C | 16 | G | 17 | A | 18 | C | 21 | cWW | tWH | | | |
6 | ➜ | 4NVV | 0.3321 | 3 | | A | 23S Ribosomal RNA | U | 589 | A | 590 | U | 591 | U | 592 | G | 593 | A | 594 | A | 598 | cWW | | | | |
7 | ➜ | 4IOA | 0.3421 | 3 | T-loop with 2 stacked bulged bases | X | LSU rRNA | U | 575 | A | 576 | U | 577 | U | 578 | G | 579 | A | 580 | A | 584 | cWW | | | | |
8 | ➜ | 1VW3 | 0.2749 | 3 | | A | 21S ribosomal RNA | U | 465 | U | 466 | U | 467 | U | 468 | G | 469 | U | 470 | A | 474 | cWW | | | | |
9 | ➜ | 2QBG | 0.2222 | 3 | | B | 23S rRNA | U | 566 | U | 567 | U | 568 | U | 569 | G | 570 | U | 571 | A | 575 | cWW | | | | |
10 | ➜ | 3U5H | 0.2701 | 3 | | 5 | 25S rRNA | U | 640 | C | 641 | U | 642 | U | 643 | G | 644 | A | 645 | A | 649 | cWW | ntWH | | | |
11 | ➜ | 4A1B | 0.2771 | 3 | | 1 | 26S RRNA | U | 664 | C | 665 | U | 666 | U | 667 | G | 668 | A | 669 | A | 673 | cWW | ntWH | | | |
12 | ➜ | 4CUV | 0.3086 | 3 | | 1 | 25S RRNA | U | 640 | C | 641 | U | 642 | U | 643 | G | 644 | A | 645 | A | 649 | cWW | ntWH | | | |
13 | ➜ | 4GMA | 0.2976 | 2 | | Z | Adenosylcobalamin riboswitch | G | 58 | U | 59 | G | 60 | A | 61 | G | 62 | A | 63 | C | 66 | cWW | ntWH | | | |
14 | ➜ | 2QBG | 0.2259 | 2 | | B | 23S rRNA | G | 1281 | U | 1282 | G | 1283 | A | 1284 | A | 1285 | A | 1286 | C | 1289 | cWW | tWH | | | |
15 | ➜ | 4IOA | 0.2231 | 2 | T-loop with 2 stacked bulged bases | X | LSU rRNA | G | 1294 | U | 1295 | G | 1296 | A | 1297 | G | 1298 | A | 1299 | C | 1302 | cWW | tWH | | | |
16 | ➜ | 4NVV | 0.2239 | 2 | | A | 23S Ribosomal RNA | G | 1327 | U | 1328 | G | 1329 | A | 1330 | G | 1331 | A | 1332 | C | 1335 | cWW | tWH | | | |
17 | ➜ | 1S72 | 0.2077 | 2 | | 0 | LSU rRNA | G | 1387 | U | 1388 | G | 1389 | A | 1390 | G | 1391 | A | 1392 | C | 1395 | cWW | tWH | | | |
18 | ➜ | 4A1B | 0.1551 | 2 | | 1 | 26S RRNA | A | 1488 | U | 1489 | G | 1490 | A | 1491 | G | 1492 | A | 1493 | U | 1496 | cWW | tWH | | | |
19 | ➜ | 4CUV | 0.2016 | 2 | | 1 | 25S RRNA | A | 1462 | U | 1463 | G | 1464 | A | 1465 | G | 1466 | A | 1467 | U | 1470 | cWW | tWH | | | |
20 | ➜ | 3U5H | 0.2316 | 2 | | 5 | 25S rRNA | A | 1462 | U | 1463 | G | 1464 | A | 1465 | G | 1466 | A | 1467 | U | 1470 | cWW | tWH | | | |
21 | ➜ | 3F4G | 0.2065 | 2 | | Y | FMN riboswitch | G | 68 | U | 69 | G | 70 | A | 71 | A | 72 | A | 73 | C | 76 | cWW | tWH | | | |
22 | ➜ | 4FRG | 0.2241 | 2 | T-loop with 2 bulged bases not stacked | B | cobalamin riboswitch aptamer domain | G | 28 | U | 29 | G | 30 | A | 31 | A | 32 | A | 33 | C | 36 | cWW | ntWH | | | |
23 | ➜ | 3F4G | 0.2144 | 2 | | X | FMN riboswitch | G | 17 | U | 18 | G | 19 | A | 20 | A | 21 | A | 22 | C | 25 | cWW | tWH | | | |
24 | ➜ | 4FRN | 0.1656 | 2 | | A | Cobalamin riboswitch aptamer domain | G | 28 | U | 29 | G | 30 | U | 31 | A | 32 | A | 33 | C | 36 | cWW | tWH | | | |
25 | ➜ | 4GXY | 0.1814 | 2 | T-loop with 2 stacked bulged bases | A | Adenosylcobalamin riboswitch | G | 49 | U | 50 | G | 51 | C | 52 | A | 53 | A | 54 | C | 57 | cWW | tWH | | | |
26 | ➜ | 4FAW | 0.1333 | 2 | | A | Group II catalytic intron D1-D4-1 | G | 30 | U | 31 | G | 32 | A | 33 | G | 34 | A | 35 | C | 38 | cWW | tWH | | | |
27 | ➜ | 4P5J | 0.1078 | 2 | T-loop with 2 stacked bulged bases | A | tRNA-like 3' UTR element | G | 46 | U | 47 | G | 48 | C | 49 | A | 50 | A | 51 | C | 54 | cWW | tWH | | | |
28 | ➜ | 3ICQ | 0.2158 | 2 | T-loop with 2 stacked bulged bases | E | RNA (62-MER) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
29 | ➜ | 3WFS | 0.2350 | 2 | T-loop with 2 stacked bulged bases | A | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
30 | ➜ | 2NRE | 0.2017 | 2 | | F | leucyl tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
31 | ➜ | 2DER | 0.1920 | 2 | T-loop with 2 stacked bulged bases | D | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
32 | ➜ | 3AL0 | 0.1652 | 2 | T-loop with 2 stacked bulged bases | E | tRNAGln | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
33 | ➜ | 1QRS | 0.1374 | 2 | | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
34 | ➜ | 4MGM | 0.1437 | 2 | | B | tRNA glycine | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | C | 60 | cWW | tWH | | | |
35 | ➜ | 2ZZM | 0.1169 | 2 | T-loop with 2 stacked bulged bases | B | RNA (84-MER) | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
36 | ➜ | 2BTE | 0.1567 | 2 | | E | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
37 | ➜ | 2BTE | 0.1166 | 2 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
38 | ➜ | 4AQ7 | 0.0967 | 2 | | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
39 | ➜ | 1WZ2 | 0.1544 | 2 | T-loop with 2 stacked bulged bases | D | tRNA | G | 965 | U | 966 | U | 967 | C | 968 | G | 969 | A | 970 | C | 973 | cWW | tWH | | | |
40 | ➜ | 2CSX | 0.1291 | 2 | T-loop with 2 stacked bulged bases | C | RNA (75-MER) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
41 | ➜ | 2ZUF | 0.0868 | 2 | | B | tRNA-Arg | G | 953 | U | 954 | U | 955 | C | 956 | A | 957 | A | 958 | C | 961 | cWW | tWH | | | |
42 | ➜ | 3W3S | 0.0996 | 2 | T-loop with 2 stacked bulged bases | B | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
43 | ➜ | 3ADC | 0.0930 | 2 | | C | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
44 | ➜ | 3ADD | 0.0787 | 2 | T-loop with 2 stacked bulged bases | C | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
45 | ➜ | 3RG5 | 0.0000 | 2 | | A | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
46 | ➜ | 4MGN | 0.0957 | 2 | | D | tRNA-glycine | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | C | 60 | cWW | tWH | | | |
47 | ➜ | 1J1U | 0.0934 | 2 | T-loop with 2 stacked bulged bases | B | tRNA(Tyr) | G | 554 | U | 555 | U | 556 | C | 557 | A | 558 | A | 559 | C | 562 | cWW | tWH | | | |
48 | ➜ | 2DU3 | 0.1120 | 2 | T-loop with 2 stacked bulged bases | D | tRNA | G | 952 | U | 953 | U | 954 | C | 955 | G | 956 | A | 957 | C | 960 | cWW | tWH | | | |
49 | ➜ | 4LCK | 0.1343 | 2 | T-loop with 2 stacked bulged bases | B | tRNA | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | C | 60 | cWW | tWH | | | |
50 | ➜ | 4GCW | 0.1411 | 2 | T-loop with 2 stacked bulged bases | B | TRNA(THR) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
51 | ➜ | 1QU2 | 0.1239 | 2 | T-loop with 2 stacked bulged bases | T | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
52 | ➜ | 2AZX | 0.1515 | 2 | | C | 72-MER | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | C | 561 | cWW | tWH | | | |
53 | ➜ | 2ZZN | 0.1818 | 2 | | C | RNA (71-MER) | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | |
54 | ➜ | 3AM1 | 0.1507 | 2 | T-loop with 2 stacked bulged bases | B | ASL-truncated tRNA | G | 59 | U | 60 | U | 61 | C | 62 | G | 63 | A | 64 | C | 67 | cWW | tWH | | | |
55 | ➜ | 2ZM5 | 0.1653 | 2 | | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
56 | ➜ | 2D6F | 0.1891 | 2 | T-loop with 2 stacked bulged bases | F | tRNA | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | C | 961 | cWW | tWH | | | |
57 | ➜ | 1U0B | 0.1779 | 2 | T-loop with 2 stacked bulged bases | A | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
58 | ➜ | 2DU6 | 0.1948 | 2 | | D | tRNA | G | 952 | U | 953 | U | 954 | C | 955 | G | 956 | A | 957 | C | 960 | cWW | ntWH | | | |
59 | ➜ | 2CV1 | 0.1318 | 2 | | D | tRNA | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | C | 561 | cWW | tWH | | | |
60 | ➜ | 3EPH | 0.1675 | 2 | T-loop with 2 stacked bulged bases | E | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
61 | ➜ | 3TUP | 0.1860 | 2 | T-loop with 2 stacked bulged bases | T | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | |
62 | ➜ | 3A2K | 0.1907 | 2 | | C | bacterial tRNA | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | C | 62 | cWW | tWH | | | |
63 | ➜ | 3AMU | 0.1982 | 2 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH | | | ntWH |
64 | ➜ | 2NR0 | 0.2217 | 2 | | E | leucyl tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH | | | ntWH |
65 | ➜ | 1GAX | 0.2131 | 2 | T-loop with 2 stacked bulged bases | D | TRNA(VAL) | G | 952 | U | 953 | U | 954 | C | 955 | A | 956 | A | 957 | C | 960 | cWW | tWH | | | |
66 | ➜ | 1J2B | 0.3081 | 2 | Other HL | C | tRNA(Val) | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | C | 962 | cWW | tWH | | | |
67 | ➜ | 1J2B | 0.3582 | 2 | | D | tRNA(Val) | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | C | 962 | cWW | tWH | | ntSH | |
68 | ➜ | 2DR8 | 0.4480 | 2 | | B | tRNA (33-MER) | G | 12 | U | 13 | U | 14 | C | 15 | G | 16 | A | 17 | C | 20 | cWW | tWH | | | |
69 | ➜ | 3OVA | 0.4413 | 2 | | C | RNA (34-MER) | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | C | 20 | cWW | tWH | | | |
70 | ➜ | 3OUY | 0.4585 | 2 | | C | RNA (35-MER) | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | C | 20 | cWW | ntWH | ncWW | | |
71 | ➜ | 4KR2 | 0.4740 | 2 | | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | ntWS | | | |