Description:
T-loops with two bulged bases
Basepair signature:
cWW-tWH-R-R-R
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.03 | Avg 0.30 | Max 0.67
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 71-61-72-62-73-5
1463RG50.00002G53U54U55C56A57A58C61cWWntWS
2473ADD0.07872G53U54U55C56A57A58C61cWWntWS
3502ZUF0.08682G953U954U955C956A957A958C961cWWtWH
4483ADC0.09302G53U54U55C56A57A58C61cWWntWS
5441J1U0.09342G554U555U556C557A558A559C562cWWtWH
6454MGN0.09572G52U53U54C55G56A57C60cWWtWH
7544AQ70.09672G53U54U55C56A57A58C61cWWntWS
8493W3S0.09962G53U54U55C56G57A58C61cWWntWS
9314P5J0.10782G46U47G48C49A50A51C54cWWtWH
10432DU30.11202G952U953U954C955G956A957C960cWWntWH
11414TZZ0.11212G52U53U54C55G56A57C60cWWtWH
12552BTE0.11662G53U54U55C56A57A58C61cWWntWS
13532ZZM0.11692G53U54U55C56A57A58C61cWWntWS
14421QU20.12392G53U54U55C56A57A58C61cWWntWS
15523WQY0.12492G1653U1654U1655C1656A1657A1658C1661cWWtWH
16512CSX0.12912G53U54U55C56G57A58C61cWWntWS
17322CV10.13182G553U554U555C556G557A558C561cWWtWH
18254FAW0.13332G30U31G32A33G34A35C38cWWtWH
19581QRS0.13742G53U54U55C56G57A58C61cWWntWS
20394GCW0.14112G53U54U55C56G57A58C61cWWntWS
21574MGM0.14372G52U53U54C55G56A57C60cWWtWH
22383AM10.15072G59U60U61C62G63A64C67cWWtWH
23332AZX0.15152G553U554U555C556G557A558C561cWWtWH
24641WZ20.15442G965U966U967C968G969A970C973cWWtWH
25234A1B0.15512A1488U1489G1490A1491G1492A1493U1496cWWtWH
26562BTE0.15672G53U54U55C56A57A58C61cWWntWS
27241VX60.16062A1611U1612G1613A1614G1615A1616U1619cWWtWH
28593AL00.16522G53U54U55C56G57A58C61cWWntWS
29612ZM50.16532G53U54U55C56G57A58C61cWWntWS
30264FRN0.16562G28U29G30U31A32A33C36cWWtWH
31404TZZ0.16642G52U53U54C55G56A57C60cWWtWH
32353EPH0.16752G53U54U55C56G57A58C61cWWntWS
33361U0B0.17792G53U54U55C56G57A58C61cWWntWS
34304GXY0.18142G49U50G51C52A53A54C57cWWtWH
35632ZZN0.18182G53U54U55C56A57A58C61cWWntWS
36343TUP0.18602G53U54U55C56G57A58C61cWWntWS
37372D6F0.18912G953U954U955C956G957A958C961cWWtWH
38653A2K0.19072G54U55U56C57G58A59C62cWWtWH
39622DER0.19202G53U54U55C56G57A58C61cWWntWS
40602DU60.19482G952U953U954C955G956A957C960cWWntWH
41693AMU0.19822G53U54U55C56G57A58C61cWWntWS
42224CUV0.20162A1462U1463G1464A1465G1466A1467U1470cWWtWH
43662NRE0.20172G53U54U55C56A57A58C61cWWntWS
44293F4G0.20652G68U69G70A71A72A73C76cWWtWH
45211S720.20772G1387U1388G1389A1390G1391A1392C1395cWWtWH
46671GAX0.21312G952U953U954C955A956A957C960cWWntWH
47273F4G0.21442G17U18G19A20A21A22C25cWWtWH
48713ICQ0.21582G53U54U55C56G57A58C61cWWntWS
49724R0D0.22122G31U32G33A34A35A36C39cWWtWH
50682NR00.22172G53U54U55C56A57A58C61cWWntWS
5192QBG0.22223U566U567U568U569G570U571A575cWW
52204QCN0.22262G1327U1328G1329A1330G1331A1332C1335cWWtWH
53194IOA0.22312G1294U1295G1296A1297G1298A1299C1302cWWtWH
54284FRG0.22412G28U29G30A31A32A33C36cWWtWH
55172QBG0.22592G1281U1282G1283A1284A1285A1286C1289cWWtWH
56183U5H0.23162A1462U1463G1464A1465G1466A1467U1470cWWtWH
57703WFS0.23502G53U54U55C56G57A58C61cWWntWS
58164W210.25162A2376C2377G2378A2379G2380A2381U2384cWWtWH
59133U5H0.27013U640C641U642U643G644A645A649cWWntWH
6081VW30.27493U465U466U467U468G469U470A474cWW
61124A1B0.27713U664C665U666U667G668A669A673cWWntWH
62154GMA0.29762G58U59G60A61G62A63C66cWWntWH
63731J2B0.30812G954U955U956C957A958A959C962cWWtWHntSH
64101VX60.30863U718C719U720U721G722A723A727ntWHcWWntWH
65114CUV0.30863U640C641U642U643G644A645A649cWWntWH
6653VJR0.33882G13U14U15C16G17A18C21cWWtWH
6764QCN0.34053U589A590U591U592G593A594A598cWW
6874IOA0.34213U575A576U577U578G579A580A584cWW
6943VJR0.34862G13U14U15C16G17A18C21cWWtWH
70144W210.34923U1317C1318U1319U1320G1321A1322A1326cWWntWH
71741J2B0.35822G954U955U956C957A958A959C962cWWtWHntSH
7222AKE0.39942G53U54U55C56G57A58C61cWWntWS
73763OVA0.44132G12U13U14C15A16A17C20cWWtWHncWW
7432ZNI0.44542G53U54G55A56A57A58C61cWWntWS
75752DR80.44802G12U13U14C15G16A17C20cWWtWHncWW
76773OUY0.45852G12U13U14C15A16A17C20cWWtWHncWW
77784KR20.47402G53U54U55C56G57A58C61cWWntWS
7813Q1Q0.48012G63U64U65C66G67A68C71cWWtWHncWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCAAGUC11
GUUCGAAUC10
GUUCGAUUC9
UCUUGAAACA5
GUUCAAAUC5
GUUCGAGUC5
AUGAGAACU4
GUUCGAUCC4
GUGAAAUUC3
GUGAGAAUC3
GUUCAAUUC3
UUUUGUAUAA2
GUUCGACUC2
UAUUGAAGCA2
GUGAAACUC1
GUGAAAAGC1
ACGAGAACU1
GUGCAACUC1
GUGAGAACC1
GUGAGAGUC1
GUGUAAUUC1
GUGCAAGUC1
GUUCGAGCC1
GUGAAAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
UUCAAGU11
UUCGAAU10
UUCGAUU9
CUUGAAAC5
UGAGAAC5
UUCGAGU5
UUCAAAU5
UUCGAUC4
UUCAAUU3
UGAGAAU3
UGAAAUU3
UUUGUAUA2
UUCGACU2
AUUGAAGC2
UGAAACU1
CGAGAAC1
UGAAAAG1
UGCAACU1
UGAAAGU1
UGAGAGU1
UGUAAUU1
UGCAAGU1
UUCGAGC1

Mutual discrepancy heat map legend: