Description:
T-loops with two bulged bases
Basepair signature:
cWW-tWH-R-R-R
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.03 | Avg 0.29 | Max 0.67
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 71-72-62-73-5
1203RG50.00002G53U54U55C56A57A58C61cWWtWH
2213ADD0.07872G53U54U55C56A57A58C61cWWtWH
3192ZUF0.08682G953U954U955C956A957A958C961cWWtWH
4223ADC0.09302G53U54U55C56A57A58C61cWWtWH
5171J1U0.09342G554U555U556C557A558A559C562cWWtWH
6114AQ70.09672G53U54U55C56A57A58C61cWWtWH
7183W3S0.09962G53U54U55C56G57A58C61cWWtWH
8153L0U0.10702G53U54U55C56G57A58C61cWWtWH
9162DU30.11202G952U953U954C955G956A957C960cWWntWH
10102BTE0.11662G53U54U55C56A57A58C61cWWtWH
11232ZZM0.11692G53U54U55C56A57A58C61cWWtWH
12321QU20.12392G53U54U55C56A57A58C61cWWtWH
13142CSX0.12912G53U54U55C56G57A58C61cWWtWH
14342CV10.13182G553U554U555C556G557A558C561cWWtWH
15464FAW0.13332G30U31G32A33G34A35C38cWWtWH
16131QRS0.13742G53U54U55C56G57A58C61cWWtWH
17364GCW0.14112G53U54U55C56G57A58C61cWWtWH
18273AM10.15072G59U60U61C62G63A64C67cWWtWH
19332AZX0.15152G553U554U555C556G557A558C561cWWtWH
20121WZ20.15442G965U966U967C968G969A970C973cWWtWH
21454A1B0.15512A1488U1489G1490A1491G1492A1493U1496cWWtWH
2292BTE0.15672G53U54U55C56A57A58C61cWWtWH
23383AL00.16522G53U54U55C56G57A58C61cWWtWH
24262ZM50.16532G53U54U55C56G57A58C61cWWtWH
25444FRN0.16562G28U29G30U31A32A33C36cWWtWH
26313EPH0.16752G53U54U55C56G57A58C61cWWtWH
27351U0B0.17792G53U54U55C56G57A58C61cWWtWH
28474GXY0.18142G49U50G51C52A53A54C57cWWtWH
29282ZZN0.18182G53U54U55C56A57A58C61cWWtWH
30303TUP0.18602G53U54U55C56G57A58C61cWWtWH
31372D6F0.18912G953U954U955C956G957A958C961cWWtWH
32253A2K0.19072G54U55U56C57G58A59C62cWWtWH
33292DER0.19202G53U54U55C56G57A58C61cWWtWH
34392DU60.19482G952U953U954C955G956A957C960cWWntWH
35243AMU0.19822G53U54U55C56G57A58C61cWWtWH
3682NRE0.20172G53U54U55C56A57A58C61cWWtWH
37413F4G0.20652G68U69G70A71A72A73C76cWWtWH
38501S720.20772G1387U1388G1389A1390G1391A1392C1395cWWtWH
3971GAX0.21312G952U953U954C955A956A957C960cWWntWH
40433F4G0.21442G17U18G19A20A21A22C25cWWtWH
41403ICQ0.21582G53U54U55C56G57A58C61cWWtWH
42493V2F0.22072G1281U1282G1283A1284G1285A1286C1289cWWtWH
4362NR00.22172G53U54U55C56A57A58C61cWWtWH
44562QBG0.22223U566U567U568U569G570U571A575cWW
45424FRG0.22412G28U29G30A31A32A33C36cWWtWH
46522QBG0.22592G1281U1282G1283A1284A1285A1286C1289cWWtWH
47483U5H0.23162A1462U1463G1464A1465G1466A1467U1470cWWtWH
48512ZJR0.25372G1294U1295G1296A1297G1298A1299C1302cWWtWH
49553U5H0.27013U640C641U642U643G644A645A649cWWntWH
50544A1B0.27713U664C665U666U667G668A669A673cWWntWH
51534GMA0.29762G58U59G60A61G62A63C66cWWntWH
5251J2B0.30812G954U955U956C957A958A959C962cWWtWHntSH
53572ZJR0.32503U575A576U577U578G579A580A584cWW
54583V2F0.33673U566A567U568U569G570A571A575cWW
55593VJR0.33882G13U14U15C16G17A18C21cWWtWH
56603VJR0.34862G13U14U15C16G17A18C21cWWtWH
5741J2B0.35822G954U955U956C957A958A959C962cWWtWHntSH
58622AKE0.39942G53U54U55C56G57A58C61cWWtWH
5923OVA0.44132G12U13U14C15A16A17C20cWWtWHncWW
60612ZNI0.44542G53U54G55A56A57A58C61cWWtWH
6132DR80.44802G12U13U14C15G16A17C20cWWtWHncWW
6213OUY0.45852G12U13U14C15A16A17C20cWWtWHncWW
63633Q1Q0.48012G63U64U65C66G67A68C71cWWtWHncWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCAAGUC11
GUUCGAAUC8
GUUCGAUUC8
GUUCGAUCC4
GUUCAAAUC4
GUGAAAUUC3
GUGAGAAUC3
GUUCAAUUC3
GUUCGAGUC3
GUUCGACUC2
UCUUGAAACA2
AUGAGAACU2
UAUUGAAGCA2
GUGAAACUC1
GUGAAAAGC1
UUUUGUAUAA1
GUGCAAGUC1
GUGAGAGUC1
GUUCGAGCC1
GUGUAAUUC1
GUGAGAACC1
Non-Watson-Crick part of the motif
SequenceCounts
UUCAAGU11
UUCGAAU8
UUCGAUU8
UUCGAUC4
UUCAAAU4
UUCAAUU3
UGAGAAC3
UUCGAGU3
UGAAAUU3
UGAGAAU3
CUUGAAAC2
AUUGAAGC2
UUCGACU2
UGAAACU1
UGAAAAG1
UGUAAUU1
UGAGAGU1
UUCGAGC1
UGCAAGU1
UUUGUAUA1

Release history

Release1.0
Date2013-03-04
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_72498.5Only in the parent motif
HL_72498.4
Compare
HL_4A1B_015, HL_3L0U_003, HL_2AZX_003, HL_3F4G_001, HL_3V2F_018, HL_3VJR_001, HL_4A1B_030, HL_4GXY_002, HL_3V2F_030, HL_2DU3_003, HL_3ADC_004, HL_2ZUF_003, HL_2DER_006, HL_4FAW_001, HL_4GMA_002, HL_2D6F_006, HL_3AMU_003, HL_2ZJR_017, HL_3AL0_003, HL_2ZM5_003, HL_1QU2_003, HL_3U5H_014, HL_2QBG_034, HL_1S72_034, HL_2CSX_003, HL_2ZJR_032, HL_2NR0_004, HL_3TUP_003, HL_3ADD_004, HL_3ICQ_005, HL_2ZZN_003, HL_3VJR_002, HL_3A2K_003, HL_2CV1_006, HL_3AM1_004, HL_1WZ2_008, HL_3OUY_001, HL_3EPH_003, HL_3U5H_031, HL_2NRE_003, HL_1J1U_003, HL_4GCW_002, HL_3F4G_004, HL_2ZZM_004, HL_2ZNI_003, HL_1J2B_004, HL_4AQ7_003, HL_1U0B_003, HL_1J2B_002, HL_2QBG_019, HL_3RG5_004, HL_2DU6_003, HL_2DR8_001, HL_2BTE_008, HL_3Q1Q_011, HL_4FRN_001, HL_1GAX_006, HL_1QRS_003, HL_2AKE_003, HL_2BTE_004, HL_3OVA_001, HL_4FRG_001HL_3W3S_004

Children motifs

Child motifCommon motif instancesOnly in HL_72498.5Only in the child motif
HL_72498.6
Compare
HL_4A1B_015, HL_2CSX_003, HL_2AZX_003, HL_3VJR_002, HL_3V2F_018, HL_3VJR_001, HL_4A1B_030, HL_3F4G_004, HL_3V2F_030, HL_2DU3_003, HL_3ADC_004, HL_2ZUF_003, HL_2DER_006, HL_4FAW_001, HL_4GMA_002, HL_2D6F_006, HL_3AMU_003, HL_3AL0_003, HL_3ICQ_005, HL_2DR8_001, HL_2NRE_003, HL_3U5H_014, HL_3U5H_031, HL_1S72_034, HL_1U0B_003, HL_3RG5_004, HL_2NR0_004, HL_2AKE_003, HL_2ZZN_003, HL_3F4G_001, HL_3A2K_003, HL_2CV1_006, HL_3AM1_004, HL_1WZ2_008, HL_3OUY_001, HL_3EPH_003, HL_1QU2_003, HL_1J1U_003, HL_4GCW_002, HL_4GXY_002, HL_2QBG_034, HL_4AQ7_003, HL_2ZZM_004, HL_2ZNI_003, HL_1J2B_004, HL_4FRG_001, HL_1J2B_002, HL_2QBG_019, HL_3L0U_003, HL_3W3S_004, HL_2DU6_003, HL_3TUP_003, HL_2BTE_008, HL_3Q1Q_011, HL_4FRN_001, HL_1GAX_006, HL_1QRS_003, HL_3ADD_004, HL_2BTE_004, HL_3OVA_001, HL_2ZM5_003HL_2ZJR_017, HL_2ZJR_032HL_4IOA_031, HL_4IOA_017

Coloring options:

Mutual discrepancy heat map legend: