Description:
Double sheared (tSH) with U-turn
Basepair signature:
cWW-tSH-R-R-R-R
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.07 | Avg 0.51 | Max 0.88
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7 81-82-72-83-53-64-75-76-7
1185AOX0.00000G11G12U13G14G15C16U17C18cWWntSHntSH
2193J9W0.20030C136G137U138A139A140U141G142G143cWWtSH
3171E8O0.23360G110G111U112G113G114C115G116C117cWWntSHntSH
4163JAN0.25400G10G11U12G13G14C15G16C17cWWntSHntSH
5205J7L0.25830G712G713U714A715A716C717A718C719cWWtSH
6153HHN0.27050G92U93U94A95A96A97A98C99cWWtSHtSH
7274V8P0.31240C486G487U488A489A490A491A492G493cWWtSHntSH
8244V880.32100U1267G1268U1269A1270A1271C1272A1273A1274cWWtSH
9254V190.33140C534G535U536U537A538A539A540G541cWWtSHtSH
10145FDU0.34200G759G760U761G762A763G764A765C766cWWtSH
11221MMS0.35140C1092G1093U1094A1095A1096C1097A1098G1099cWWtSH
12235D8H0.35300C1202G1203U1204A1205A1206C1207A1208G1209cWWtSHntSH
1393JAM0.35441G329A330U331A332G333U334G335C337cWWntWH
14131U9S0.35551G181G182U183A184A185G186A187C189cWWntSH
15111FJG0.36121G259G260U261A262A263U264G265C267cWWntWHntSH
1683J7A0.37511G336G337U338A339U340U341G342C344cWWntWH
1774BTS0.37971U321G322U323A324U325U326G327A329cWWntWH
18211QA60.38300C142G143U144A145A146U147A148G149cWWtSH
19104V880.38411G330A331U332A333G334U335G336C338cWWntWH
20334IOA0.38490C2334U2335G2336A2337C2338A2339C2340G2341cWWntSHtSH
21123Q1Q0.39211G165G166U167A168A169G170A171C173cWWntSH
2263J9W0.40011G267G268U269A270A271C272G273C275cWWntWH
23263J7Y0.41020C2202G2203U2204U2205C2206A2207A2208G2209cWWtSHntSH
2444KQY0.41821C94U95C96G97A98A99C100G102cWWntSH
2534KQY0.41821C94U95C96G97A98A99C100G102cWWntSH
2654V4Q0.41911G259G260U261A262A263C264G265C267cWWntWHntSH
27285AN90.42400U1502G1503U1504A1505A1506C1507A1508A1509cWWtSH
28344V8P0.43580G1569U1570U1571A1572A1573C1574U1575C1576cWWncWWntSH
29353J790.45380A2512U2513G2514A2515A2516A2517U2518U2519cWWncWWntSH
30294V190.47680C1196A1197A1198A1199C1200C1201A1202G1203cWWncSW
31305FDU0.47860C2367C2368U2369G2370C2371A2372A2373G2374cWWntSH
3223J9W0.50520C1138G1139U1140A1141A1142U1143A1144G1145cWWntSH
3313J7P0.50810U2006G2007U2008A2009A2010C2011A2012A2013cWWntSH
34384V910.51120G2469C2470G2471C2472A2473A2474G2475C2476cWWncWWtSH
35314V9F0.51270C1196G1197U1198A1199A1200C1201A1202G1203cWWntSWntSH
36375G2X0.56660C2457A2458G2459U2460A2461A2462U2463G2464cWWncWWntSH
37393J9W0.56700G849U850U851U852C853C854G855C856cWWncWWntSH
38362IL90.60360G6118C6119G6119A6119A6119A6119G6119C6124cWWtHStHStHS
39403JCS0.63470A465C466G467A468G469A470U471U472cWWncWWntSH
40324V910.65190C1759A1760C1761C1762U1763U1764U1765G1766cWWncWW
41423J790.67520G135U136G137C138A139A140A141C142cWWncHW
42413J7P0.70010G617C618A619G620C621C622G623C624cWWncWWntSHntSH

3D structures

Complete motif including flanking bases
SequenceCounts
UGUAACAA3
CGUAACAG3
GAUAGUGGC2
GGUAACGGC2
CUCGAACAG2
GGUAAGAGC2
CGUAAUAG2
GGUGGCGC2
CCUGCAAG1
GCGCAAGC1
CAAACCAG1
AUGAAAUU1
CAGUAAUG1
GUUUCCGC1
GUGCAAAC1
GCAGCCGC1
CACCUUUG1
ACGAGAUU1
GCGAAAGC1
GUUAACUC1
CGUAAUGG1
GGUAACAC1
GUUAAAAC1
CGUAAAAG1
GGUGAGAC1
GGUAAUGGC1
GGUAUUGGC1
CGUUCAAG1
CUGACACG1
GGUGGCUC1
UGUAUUGGA1
CGUUAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAACA7
GUAUUGG2
GUAAGAG2
GUAAUA2
UCGAACA2
AUAGUGG2
GUAACGG2
GUGGCG2
UUUCCG1
AGUAAU1
CGCAAG1
CUGCAA1
CGAAAG1
AAACCA1
UGCAAA1
ACCUUU1
CGAGAU1
CAGCCG1
UUAACU1
UUAAAA1
GUAAUGG1
GUAAAA1
GUUAAA1
UGACAC1
GUGGCU1
GUGAGA1
GUAAUG1
GUUCAA1
UGAAAU1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: