Description:
T-loops with two bulged bases
Basepair signature:
cWW-R-R-tWH-R-R-R
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.06 | Avg 0.39 | Max 0.98
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7 8 91-61-92-62-93-53-76-8
1504YCO0.00000G53U54U55C56G57A58U59U60C61cWWtWH
2515AXM0.07700G53U54U55C56G57A58U59C60C61cWWtWH
3525AXM0.07700G53U54U55C56G57A58U59C60C61cWWtWH
4461J1U0.08280G554U555U556C557A558A559A560U561C562cWWtWH
5471J1U0.08280G554U555U556C557A558A559A560U561C562cWWtWH
6454YYE0.09920G53U54U55C56A57A58A59U60C61cWWtWHntSHtWH
7535HR60.10030G52U53U54C55G56A57A58U59C60cWWtWHtWH
8321QU20.10210G53U54U55C56A57A58G59U60C61cWWtWHntSH
9482ZUE0.10580G953U954U955C956A957A958A959U960C961cWWtWHtWH
10554JXZ0.11130G953U954U955C956G957A958A959U960C961cWWtWHtWH
11444RDX0.11450G53U54U55C56A57A58G59U60C61cWWtWH
12434RDX0.11450G53U54U55C56A57A58G59U60C61cWWtWHntSH
13545HR70.11490G52U53U54C55G56A57A58U59C60cWWtWHtWH
14314YCP0.11510G53U54U55C56G57A58G59U60C61cWWtWH
15492ZZM0.11990G53U54U55C56A57A58A59U60C61cWWtWHntSHtWH
16422ZZN0.11990G53U54U55C56A57A58A59U60C61cWWtWHntSHtWH
17394V9B0.12090G53U54U55C56A57A58A59U60C61cWWtWHntSHtWH
18413WQY0.12120G1653U1654U1655C1656A1657A1658A1659U1660C1661cWWtWH
19682AZX0.12410G553U554U555C556G557A558A559U560C561cWWtWH
20672AZX0.12410G553U554U555C556G557A558A559U560C561cWWtWHtWH
21344AQ70.12830G53U54U55C56A57A58G59U60C61cWWtWHntSH
22714WJ40.13530G53U54U55C56G57A58G59U60C61cWWtWH
23704WJ40.13530G53U54U55C56G57A58G59U60C61cWWtWH
24401QRS0.13820G53U54U55C56G57A58A59U60C61cWWtWHtWH
25335AH50.14030G53U54U55C56A57A58G59U60C61cWWtWHntSH
26574P5J0.14070G46U47G48C49A50A51C52U53C54cWWtWH
27364TUE0.14230G53U54U55C56A57A58A59U60C61cWWtWHntSHtWH
28754GCW0.14570G53U54U55C56G57A58G59C60C61cWWtWH
29744GCW0.14570G53U54U55C56G57A58G59C60C61cWWtWH
30724YVI0.15050G53U54U55C56G57A58G59U60C61cWWtWH
31582CV10.15180G553U554U555C556G557A558U559U560C561cWWtWH
32294WT80.15190G54U55U56C57A58A59A60U61C62cWWtWHtWH
3393RG50.15280G53U54U55C56A57A58U59U60C61cWWtWH
34103RG50.15280G53U54U55C56A57A58U59U60C61cWWtWHntSH
35633JAH0.15320G53U54U55C56G57A58A59A60C61cWWtWHtWH
36734LCK0.15750G52U53U54C55G56A57A58U59C60cWWtWHtWH
37354V9Q0.16040G53U54U55C56A57A58A59U60C61cWWtWHntSHtWH
38661U0B0.16060G53U54U55C56G57A58C59U60C61cWWtWH
3972DU30.16600G952U953U954C955G956A957A958U959C960cWWtWH
4062DU30.16600G952U953U954C955G956A957A958U959C960cWWtWHtWH
41693WFS0.16760G53U54U55C56G57A58U59U60C61cWWtWH
42614V8E0.17000G62U63U64C65G66A67A68U69C70cWWtWHtWH
43783AMU0.17020G53U54U55C56G57A58A59U60C61cWWtWHtWH
44381WZ20.17300G965U966U967C968G969A970A971U972C973cWWtWH
4584X4V0.17500G12U13U14C15G16A17G18U19C20cWWtWH
46302BTE0.17560G53U54U55C56A57A58G59U60C61cWWtWHntSH
47773A2K0.17580G54U55U56C57G58A59G60U61C62cWWtWH
48123W3S0.17810G53U54U55C56G57A58U59U60C61cWWtWH
49113W3S0.17810G53U54U55C56G57A58U59U60C61cWWtWH
50562D6F0.18060G953U954U955C956G957A958C959U960C961cWWtWH
5154MGN0.18110G52U53U54C55G56A57G58U59C60cWWtWH
52624V8C0.18120G64U65U66C67A68A69G70U71C72cWWtWH
53653EPK0.18970G53U54U55C56G57A58U59C60C61cWWtWH
54765IMQ0.19660G53U54U55C56A57A58A59U60C61cWWtWHntSHtWH
55813WC20.20310G53U54U55C56G57A58U59C60C61cWWtWH
56373J9W0.20550G53U54U55C56G57A58G59U60C61cWWtWH
57604WJ30.20890G53U54U55C56G57A58G59U60C61cWWtWH
58133ADD0.21170G53U54U55C56A57A58U59U60C61cWWtWHntSH
59643TUP0.21820G53U54U55C56G57A58U59U60C61cWWtWH
6042DER0.22270G53U54U55C56G57A58A59U60C61cWWtWHtWH
61794V8Q0.22420G66U67U68C69G70A71C72U73C74cWWtWH
62143A3A0.23470G53U54U55C56A57A58U59U60C61cWWtWHntSH
63903J9W0.23941U610U611U612U613G614U615A616G617A619cWWntWH
64282NR00.24050G53U54U55C56A57A58G59U60C61cWWtWHntSH
65592CT80.24680G53U54U55C56G57A58G59U60C61cWWtWH
66893J7Y0.24781U1847U1848C1849U1850G1851C1852A1853U1854A1856cWW
67824V8N0.24890G55U56U57C58G59A60A61U62C63cWWtWH
68803ICQ0.25070G53U54U55C56G57A58U59C60C61cWWtWH
69153AM10.25500G59U60U61C62G63A64U65U66C67cWWtWH
70163AM10.25500G59U60U61C62G63A64U65U66C67cWWtWH
71274V9L0.26130G53U54U55C56G57A58A59U60C61cWWtWHtWH
72175AJ00.26740G53U54U55C56G57A58U59U60C61cWWtWH
73885J7L0.28131U566U567U568U569G570U571A572U573A575ntWHcWWntWH
74924V880.28601U640C641U642U643G644A645A646A647A649cWWntWH
75953J790.30061U718C719U720U721G722A723A724A725A727ntWHcWWntWH
76934V8P0.30631U664C665U666U667G668A669A670A671A673cWWntWH
77965AJ00.31291U1300C1301U1302U1303G1304A1305A1306A1307A1309cWWntWH
78944V910.31741U640C641U642U643G644A645A646A647A649cWWntWH
79913J7P0.34681U1317C1318U1319U1320G1321A1322A1323A1324A1326cWWntWH
80865FDU0.35001U589A590U591U592G593A594A595G596A598cWW
81232AKE0.35630G53U54U55C56G57A58A59U60C61cWWtWHtWH
82222AKE0.35630G53U54U55C56G57A58A59U60C61cWWtWH
83874IOA0.36551U575A576U577U578G579A580A581G582A584cWW
84261IVS0.36630G952U953U954C955A956A957G958U959C960cWWtWHntSH
85833OVA0.38210G12U13U14C15A16A17G18U19C20cWWtWH
86843OVA0.38210G12U13U14C15A16A17G18U19C20cWWtWH
8735E6M0.38570G53U54U55C56G57A58U59U60C61cWWtWH
88184R0D0.38960G31U32G33A34A35A36G37U38C39cWWtWH
89243Q1Q0.39010G63U64U65C66G67A68U69U70C71cWWtWHncWW
90194GXY0.39200G49U50G51C52A53A54G55U56C57cWWtWH
911014IOA0.39570G1294U1295G1296A1297G1298A1299A1300U1301C1302cWWtWH
921025FDU0.39870G1327U1328G1329A1330G1331A1332A1333U1334C1335cWWtWH
93852DR80.40140G12U13U14C15G16A17U18U19C20cWWtWH
94251J2B0.40650G954U955U956C957A958A959G960U961C962cWWtWHntSH
9514QEI0.41020G53U54U55C56G57A58U59U60C61cWWtWH
9624QEI0.41020G53U54U55C56G57A58U59U60C61cWWtWH
971044V880.41690A1462U1463G1464A1465G1466A1467A1468C1469U1470cWWtWH
98204GMA0.41710G58U59G60A61G62A63A64U65C66cWWntWH
991054V8P0.41790A1488U1489G1490A1491G1492A1493A1494C1495U1496cWWtWH
100985J7L0.42390G1281U1282G1283A1284A1285A1286A1287G1288C1289cWWtWHntSS
101974V190.42531U182U183U184U185G186C187A188U189A191cWW
1021064V910.44010A1462U1463G1464A1465G1466A1467A1468C1469U1470cWWtWH
103212ZNI0.44680G53U54G55A56A57A58C59U60C61cWWtWH
1041085AJ00.45070A2355C2356G2357A2358G2359A2360A2361C2362U2363cWWtWH
1051034V9F0.45200G1387U1388G1389A1390G1391A1392A1393C1394C1395cWWtWH
1061073J790.45590A1611U1612G1613A1614G1615A1616A1617C1618U1619cWWtWH
1071003J7P0.46720A2376C2377G2378A2379G2380A2381A2382C2383U2384cWWtWH
108993J9W0.50130G1320U1321G1322A1323G1324A1325A1326U1327C1328cWWtWH
1091093VJR0.59900G13U14U15C16G17A18U19C20C21cWWtWH
1101103F2Q0.73580G17U18G19A20A21A22U23U24C25cWWtWH
1111115C450.75340G17U18G19A20A21A22U23U24C25cWWtWH
1121164FRG0.75630G28U29G30A31A32A33U34U35C36cWWtWH
1131123F4H0.76540G17U18G19A20A21A22U23U24C25cWWtWH
1141143F4H0.76820G68U69G70A71A72A73U74U75C76cWWtWH
1151133F2Q0.77090G68U69G70A71A72A73U74U75C76cWWtWH
1161174FRN0.77910G28U29G30U31A32A33U34U35C36cWWtWH
1171155C450.78640G68U69G70A71A72A73U74U75C76cWWtWH

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCGAAUC17
GUUCGAUUC14
GUUCAAGUC12
GUUCAAAUC12
GUUCGAGUC10
GUGAAAUUC7
UCUUGAAACA6
GUUCGAUCC6
GUGAGAAUC4
GUUCAAUUC4
AUGAGAACU4
GUUCGACUC3
UAUUGAAGCA2
ACGAGAACU2
GUUCGAGCC2
GUGAAAAGC1
UUUUGCAUAA1
GUGAAACUC1
GUGAGAACC1
GUGUAAUUC1
UUUUGUAUAA1
GUUCGAAAC1
GUGCAACUC1
UUUUGUAGAA1
UUCUGCAUAA1
GUGAAAGUC1
GUGCAAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
UUCGAAU17
UUCGAUU14
UUCAAGU12
UUCAAAU12
UUCGAGU10
UGAAAUU7
CUUGAAAC6
UUCGAUC6
UGAGAAC5
UUCAAUU4
UGAGAAU4
UUCGACU3
UUCGAGC2
AUUGAAGC2
CGAGAAC2
UGAAAAG1
UGAAACU1
UGUAAUU1
UUUGCAUA1
UCUGCAUA1
UUCGAAA1
UGCAACU1
UUUGUAGA1
UUUGUAUA1
UGAAAGU1
UGCAAGU1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.