IL_01903.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-5	1-6	2-5	3-4
1	IL_5AJ0_110➜	5AJ0	0.5344	1		A2	LSU rRNA	C	2625	A	2626	G	2627	*	C	2664	G	2665	G	2667		cWW		cWW
2	IL_3JCS_097➜	3JCS	0.2947	2		2	LSU rRNA	C	1094	A	1095	G	1096	*	C	1114	G	1115	G	1118		cWW	tHS	cWW
3	IL_5FDU_090➜	5FDU	0.3024	2		1A	LSU rRNA	C	2309	A	2310	G	2311	*	C	2329	G	2330	G	2333		cWW	tHS	cWW
4	IL_4V9F_080➜	4V9F	0.2896	2	Isolated tHS basepair with bulges	0	LSU rRNA	C	2331	A	2332	G	2333	*	C	2351	G	2352	G	2355		cWW	tHS	cWW
5	IL_4V8P_404➜	4V8P	0.2478	2		F1	LSU rRNA	C	2655	A	2656	G	2657	*	C	2675	G	2676	G	2679		cWW	tHS	cWW
6	IL_5AN9_030➜	5AN9	0.2655	2		N	LSU rRNA	C	2999	A	3000	G	3001	*	C	3019	G	3020	G	3023		cWW	tHS	cWW
7	IL_5AJ0_143➜	5AJ0	0.2135	2		A2	LSU rRNA	C	4205	A	4206	G	4207	*	C	4225	G	4226	G	4229		cWW	tHS	cWW
8	IL_3J79_096➜	3J79	0.2113	2		A	LSU rRNA	C	3005	A	3006	A	3007	*	U	3025	G	3026	G	3029		cWW	tHS	cWW
9	IL_4IOA_082➜	4IOA	0.2612	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2276	A	2277	A	2278	*	U	2296	G	2297	G	2300		cWW	tHS	cWW
10	IL_4V88_345➜	4V88	0.2520	2		A5	LSU rRNA	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690		cWW	tHS	cWW
11	IL_4V91_108➜	4V91	0.2704	2		1	LSU rRNA	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690		cWW	tHS	cWW
12	IL_3J7P_114➜	3J7P	0.2144	2		5	LSU rRNA	C	4243	A	4244	G	4245	*	C	4263	G	4264	G	4267		cWW	tHS	cWW
13	IL_5FDU_083➜	5FDU	0.0000	1		1A	LSU rRNA	C	2103	A	2104	G	2105	*	C	2248	G	2249	G	2251		cWW	tHS	cWW
14	IL_4V9F_076➜	4V9F	0.1088	1	Isolated tHS basepair with bulges	0	LSU rRNA	C	2122	A	2123	G	2124	*	C	2269	G	2270	G	2272		cWW	tHS	cWW
15	IL_3J9W_061➜	3J9W	0.1326	1		AA	SSU rRNA	C	1469	A	1470	G	1471	*	U	1449	G	1450	G	1452		cWW	tHS	cWW
16	IL_3JCS_090➜	3JCS	0.1797	1		2	LSU rRNA	C	669	A	670	G	671	*	U	1032	G	1033	G	1035		cWW	tHS	cWW
17	IL_5FDU_012➜	5FDU	0.1790	1		1A	LSU rRNA	C	312	A	313	G	314	*	U	374	G	375	G	377		cWW	tHS	cWW
18	IL_3J7P_109➜	3J7P	0.2054	1		5	LSU rRNA	U	3927	A	3928	G	3929	*	U	4181	G	4182	G	4184		cWW	tHS	cWW
19	IL_4IOA_077➜	4IOA	0.2998	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2064	A	2065	G	2066	*	C	2215	G	2216	G	2218		cWW	tHS	cWW
20	IL_5J7L_325➜	5J7L	0.2787	1	Isolated tHS basepair with bulges	DA	LSU rRNA	U	2081	A	2082	G	2083	*	U	2236	G	2237	G	2239		cWW	tHS	cWW
21	IL_3J79_092➜	3J79	0.2984	1		A	LSU rRNA	U	2716	A	2717	G	2718	*	U	2943	G	2944	G	2946		cWW	tHS	cWW
22	IL_5AJ0_133➜	5AJ0	0.2770	1		A2	LSU rRNA	U	3898	A	3899	G	3900	*	U	4143	G	4144	G	4146		cWW	tHS	cWW
23	IL_4V91_102➜	4V91	0.3113	1		1	LSU rRNA	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607		cWW	tHS	cWW
24	IL_5AN9_027➜	5AN9	0.3254	1		N	LSU rRNA	U	2689	A	2690	G	2691	*	U	2937	G	2938	G	2940		cWW	tHS	cWW
25	IL_4V88_341➜	4V88	0.2930	1		A5	LSU rRNA	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607		cWW	tHS	cWW
26	IL_5A2Q_102➜	5A2Q	0.6143	0		3	IRES	G	222	A	223	G	224	*	U	175	G	176	C	177		cWW	tHS	cWW
27	IL_4KYY_002➜	4KYY	0.7560	0		B+A	RNA 17-mer	U	8	U	9	G	10	*	U	8	U	9	G	10		cWW	ncWW	cWW
28	IL_4BTS_288➜	4BTS	0.8099	1		DA	SSU rRNA	C	492	A	494	C	495	*	G	477	G	478	G	479	ncWW	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAG*UGGG	7
CAG*CGUAG	3
CAU*AGUAG	2
CAA*UGUAG	2
CAG*UGGG	2
CAG*CGGG	2
CAG*CGUGG	2
GAG*UGC	1
UUG*UUG	1
CUAC*GGG	1
UAG*CGGG	1
CAG*CGGAG	1
CAG*CGUG	1
CAG*UGAG	1
CAG*CGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*GG	12
A*GUA	7
A*GUG	2
U*U	1
UA*G	1
A*G	1
A*GA	1
A*GU	1
A*GGA	1
A*GAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_01903.1 Version IL_01903.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_01903.1 Version IL_01903.1 of this group appears in releases 2.0 to 2.0

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Csv

Json