Description:
Kink-turn
Basepair signature:
cWW-tSS-L-tSH-tSS-tHS-tHS-cWW
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.09 | Avg 0.48 | Max 0.82
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7break 8 9 10 11 121-51-122-32-114-54-94-115-95-105-126-86-96-107-87-1011-12
1143GX50.00001C31G32A33G35A36A37A38*U17G18G19A20G21cWWtSSncSHtSHtHStHScWW
2133V7E0.12311C31G32A33G35A36A37A38*U17G18G19A20G21cWWtSSncSHtSHtHStHScWW
3155FJC0.12861C31G32A33G35A36A37C38*G17G18G19A20G21cWWtSSncSHtSHtHStHScWW
4105FDU0.15731C1253G1254A1255G1257A1258A1259G1260*U1280G1281G1282A1283G1284cWWncSStSHtHStHScWW
5164QVI0.17211C2129U2130G2131G2133A2134A2135C2136*G2155G2156G2157A2158G2159cWWntSStSHtHStHScWW
695J7L0.18911C1208U1209G1210G1212A1213A1214G1215*U1234G1235G1236A1237G1238cWWntSStSHtHStHScWW
785AJ00.20651C2281C2282U2283G2285A2286A2287G2288*U2308G2309G2310A2311G2312cWWtSStSHtHStHScWW
8124V880.21951U1388G1389A1390G1392A1393A1394G1395*U1415C1416G1417A1418A1419cWWncSSntSStSHtHStHScWW
9114V910.22401U1388G1389A1390G1392A1393A1394G1395*U1415C1416G1417A1418A1419cWWncSSntSStSHtHStHScWW
10184KQY0.24841C31G32A33G35A36A37G38*C17A18G19A20G21cWWtSSncSHtSHtHSntHScWW
11174KQY0.24841C31G32A33G35A36A37G38*C17A18G19A20G21cWWncSSntSSncSHtSHtHSntHScWW
1273J7P0.25871C2302C2303U2304G2306A2307A2308G2309*U2329G2330G2331A2332G2333cWWncSHtHScWW
13194C4W0.27601U26G27A28G30A31C32C33*G3C4A5A6G7cWWntSStSHtHSntHScWW
1444V9F0.30561G1312A1313U1314G1316A1317A1318G1319*U1338G1339G1340A1341C1342cWWtSStSHtHStHScWWncSS
1563J790.30721U1536G1537U1538G1540A1541A1542G1543*U1563G1564G1565A1566A1567cWWtHStHScWW
1634IOA0.31751C1221G1222G1223G1225A1226A1227G1228*U1247G1248G1249A1250G1251cWWncSHtSHtHStHScWW
1754V8P0.33451C1414C1415U1416G1418A1419A1420G1421*U1441G1442G1443A1444G1445cWWntSStSHtHStHScWW
18214AOB0.33641U31G32A33G35A36C37C38*G17C18A19A20G21cWWtSStSHntHStSScWWncSS
19204AOB0.33641U31G32A33G35A36C37C38*G17C18A19A20G21cWWtSSncSHtSHntHScWW
2023J9W0.33921C1248U1249G1250G1252A1253A1254G1255*U1274G1275G1276A1277G1278cWWntSStSHtHStHScWW
21224V9F0.34281C93G94A95G97A98A99C100*G77G78G79A80G81cWWncSSntSStSHtHStSStHScWW
22231T0K0.34711C54A55G56G58A59U60G61*C9G10G11A12G13cWWtSStSHntHSntHScWW
23244GXY0.35241C139G140A141G143A144U145C146*G82G83G84A85G86cWWncSStSHntHSntSSntHScWWncSS
24255FDU0.40321C96G97U98G100A101U102C103*G80G81G82A83G84cSScWWntSStSHtHStSStHScWW
2513J9W0.40531C2158U2159U2160G2162A2163A2164A2165*U2184G2185G2186A2187G2188cWWntSSntSHtHStHScWW
26263J9W0.40611C97U98U99G101A102U103C104*G81G82G83A84G85cWWtSHntHSntSStHScWW
27284IOA0.46681C96U97U98G100A101C102U103*A80C81G82A83G84cSScWWtSStSHtHStSScWWtHS
28274GMA0.46961G143G144A145G147A148G149U150*A93G94G95A96C97cSScWWncSHtSHtHStSStHScWW
29294V880.49591C910U911U912G914A915U916U917*G895U896C897A898G899cSScWWntSStSHntHStSSntHWntHWcWW
30305A2Q0.52071C967U968U969G971A972C973C974*G952C953U954A955G956cWWntSSntSHntHWtSScWW
31314V9F0.54362U1026G1027U1028G1031A1032C1033G1034*C936C937G938A939G940cWWntSStSHntHStSScWW
32413RW60.61794C43A44A45G47A48C49G50*U11A12C16A17G18cWWtSStSHtHWntSScWWcWWncSS
33405AJ30.67182U135C136A137A139A140C141G142*U110A111C113A114A115cWWncSStSSntSHtHWcWWcWW
34333J7A0.68322C354U355A356G358A359C360G361*U317A318C320A321G322cSScWWtSStSHtHWtSScWWcWW
35395A2Q0.69032U396G397A398C400A401C402G403*U359A360C362A363A364cSScWWncSStSSntSHncSWtHWtSScWW
36324V4Q0.69432C277G278A279G281A282U283C284*G242A243U245A246G247cSScWWncSHtSHtHWtSScWWcWW
37343J9W0.70422C285G286A287G289A290U291G292*C250A251U253A254G255cSScWWncSHtSHtHWtSScWWcWWncSS
38364V880.71692U348U349U350A352A353C354G355*U311A312C314A315A316cWWtSSntSHtHWcWWcWW
39374BTS0.72262C339A340G341C343A344C345G346*U302A303C305A306G307cSScWWtSSntSHncSWtHWtSScWWcWWncSS
40353J9M0.72572U779C780A781A783A784C785G786*C756A757C759A760A761cWWtSStSHtHWcWWcWW
41383J7P0.77092U396G397A398C400A401C402G403*U359A360C362A363A364cSScWWncSStSSntSHncSWtHWtSScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAUGACC*GCAAG3
CGACGAAG*CAGAG2
UGACCACG*UAUCAA2
UGACGAAG*UCGAA2
CCUUGAAG*UGGAG2
CGAAGAAC*GGGAG2
CAAUGACG*UAAGACAG1
UGUUUGACG*CCGAG1
GGAUGAGU*AGGAC1
UCAUAACG*UAUCAA1
CUUGGAUU*GUCAG1
CUUGGACC*GCUAG1
CUUUGACU*ACGAG1
UUUCAACG*UAUCAA1
CAGUCACG*UAUCAG1
CGACGAUG*CAUUAG1
UCAAAACG*CAUCAA1
CGACGAUC*GAUUAG1
CUAUGACG*UAUCAG1
CGAGGAUC*GGGAG1
GAUGGAAG*UGGAC1
UGUUGAAG*UGGAA1
CUGCGAAG*UGGAG1
CUGUGAAC*GGGAG1
CGAUGAAA*UGGAG1
CGAUGAAG*UGGAG1
CGGAGAAG*UGGAG1
CCUAGAAG*UGGAG1
CGUGGAUC*GGGAG1
CUUGGAAA*UGGAG1
CGACGAAA*UGGAG1
CAGAGAUG*CGGAG1
CUGUGAAG*UGGAG1
CUUUGAUC*GGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAUGAC*CAA3
GACGAA*AGA2
GACGAU*AUUA2
GACCAC*AUCA2
CUUGAA*GGA2
GACGAA*CGA2
UGUGAA*GGA2
GAAGAA*GGA2
GAUGAA*GGA2
AAUGAC*AAGACA1
UUGGAC*CUA1
UUGGAU*UCA1
CAUAAC*AUCA1
GUUUGAC*CGA1
AGUCAC*AUCA1
CAAAAC*AUCA1
GAUGAG*GGA1
UUCAAC*AUCA1
UAUGAC*AUCA1
GUGGAU*GGA1
GGAGAA*GGA1
GUUGAA*GGA1
AUGGAA*GGA1
UGCGAA*GGA1
CUAGAA*GGA1
AGAGAU*GGA1
UUUGAU*GGA1
UUGGAA*GGA1
GACGAA*GGA1
GAGGAU*GGA1
UUUGAC*CGA1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: