#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-71-82-72-83-64-56-7
13U5H0.53280 525S rRNAA3342G3343A3344G3345*C3360G3361A3362U3363cWWntSStHScWW
23DIR0.43350 ARNA (174-MER)C70G71A72G73*C19G20A21G22cWWtSHtHScWW
34A1B0.37050 126S RRNAA3300G3301A3302G3303*C3316G3317A3318U3319cWWtSHtHScWW
41S720.37650 0 LSU rRNAC2873G2874A2875G2876*C2881G2882A2883G2884cWWtSHtHScWW
53U5F0.35960 618S rRNAA1744G1745A1746G1747*C1653G1654A1655U1656cWWtSHtHScWW
62AW70.46390 A16S ribosomal RNAG1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
72XZM0.26611 A18S RRNAU37A38A39A40*U458G459C461A462cWWtSHtHScWW
84A1B0.28830 126S RRNAG125A126A127G128*C138A139A140C141cWWntSHncSWtHScWWncSH
93D0U0.16950Double shearedALysine Riboswitch RNAC16G17A18G19*C67G68A69G70cWWtSHtHScWW
101FJG0.28040 A SSU rRNAG1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
114A1B0.23660 126S RRNAG254G255A256G257*C162A163A164C165cWWtSHtHScWW
123U5H0.25862 525S rRNAA3139G3140A3141G3144*C3004A3005A3006U3007cWWtSHtHScWW
134A1B0.25112 126S RRNAG3128G3129A3131G3133*C2993G2994A2995C2996cWWtSHtHScWW
143U5F0.28270 618S rRNAG196A197A198G199*C186G187A188C189cWWtSHncSWtHScWW
152QBG0.26760 B23S rRNAG536G537A538G539*U554G555A556C557cWWtSHtHScWW
162XZM0.17570 A18S RRNAU1682A1683A1684A1685*U1640G1641A1642A1643cWWtSHtHScWW
173U5F0.21290 618S rRNAC1729A1730A1731A1732*U1669G1670A1671G1672cWWtSHtHScWW
181SA90.10490 A+BRNA (8-mer)C103G104A105G106*C111G112A113G114ntWHcWWtSHtHScWW
191SAQ0.00000Double shearedA+BRNA (8-mer)C103G104A105G106*C111G112A113G114cWWtSHtHScWW
202QBG0.13210 B23S rRNAC2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
213V2F0.11760 A23S Ribosomal RNAC2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
224IOA0.14260Double shearedX LSU rRNAC2329G2330A2331G2332*C2343G2344A2345G2346cWWtSHtHScWW
234IOA0.26350Double shearedX LSU rRNAU1530C1531A1532G1533*C1491A1492A1493G1494cWWntSHtHScWW
242IL90.69010 MRibosomal Binding Domain of the IRES RNAA6058A6059U6060A6061*U6018A6019U6020U6021cWWtSHncSWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAG*CGAG8
GGAG*UGAC3
AGAG*CGAU2
UGAA*UAAA1
UGAG*CAAA1
UCAG*CAAG1
CGAC*GAAG1
AAUA*UAUU1
GGAG*CAAC1
CGAU*AGAG1
UAAA*UGACA1
GAAG*CAAC1
AGAACG*CAAU1
GGAAAG*CGAC1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GA14
GA*AA4
CA*AA1
AU*AU1
GAAA*GA1
GAAC*AA1
AA*GAC1
AA*AA1
Annotations
  • Double sheared (4)
  • Basepair signature
    cWW-tSH-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.36 | Max 0.82
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