Description:
Double Sheared (tSH-tHS)
Basepair signature:
cWW-tSH-tHS-cWW
Free text annotation:
Almost all have zero bulged bases
Intraclusteral linkage
Min 0.07 | Avg 0.36 | Max 0.82
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4break 5 6 7 81-71-82-72-83-53-64-56-7
1191SAQ0.00000C103G104A105G106*C111G112A113G114ntWHcWWtSHtHScWW
2181SA90.10490C103G104A105G106*C111G112A113G114ntWHcWWtSHtHScWW
3213V2F0.11760C2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
4202QBG0.13210C2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
5224IOA0.14260C2329G2330A2331G2332*C2343G2344A2345G2346cWWtSHtHScWW
693D0U0.16950C16G17A18G19*C67G68A69G70cWWtSHtHScWW
7162XZM0.17570U1682A1683A1684A1685*U1640G1641A1642A1643cWWtSHtHScWW
8173U5F0.21290C1729A1730A1731A1732*U1669G1670A1671G1672cWWtSHtHScWW
9114A1B0.23660G254G255A256G257*C162A163A164C165cWWtSHtHScWW
10134A1B0.25112G3128G3129A3131G3133*C2993G2994A2995C2996cWWtSHtHScWW
11123U5H0.25862A3139G3140A3141G3144*C3004A3005A3006U3007cWWtSHtHScWW
12234IOA0.26350U1530C1531A1532G1533*C1491A1492A1493G1494cWWntSHtHScWW
1372XZM0.26611U37A38A39A40*U458G459C461A462cWWtSHntHWtHScWW
14152QBG0.26760G536G537A538G539*U554G555A556C557cWWtSHtHScWW
15101FJG0.28040G1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
16143U5F0.28270G196A197A198G199*C186G187A188C189cWWtSHncSWtHScWW
1784A1B0.28830G125A126A127G128*C138A139A140C141cWWntSHncSWtHScWWncSH
1853U5F0.35960A1744G1745A1746G1747*C1653G1654A1655U1656cWWtSHtHScWW
1934A1B0.37050A3300G3301A3302G3303*C3316G3317A3318U3319cWWtSHtHScWW
2041S720.37650C2873G2874A2875G2876*C2881G2882A2883G2884cWWtSHtHScWW
2123DIR0.43350C70G71A72G73*C19G20A21G22cWWtSHtHScWW
2262AW70.46390G1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
2313U5H0.53280A3342G3343A3344G3345*C3360G3361A3362U3363cWWntSStHScWW
24242IL90.69010A6058A6059U6060A6061*U6018A6019U6020U6021cWWtSHncSWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAG*CGAG8
GGAG*UGAC3
AGAG*CGAU2
CGAC*GAAG1
CGAU*AGAG1
AAUA*UAUU1
GAAG*CAAC1
UCAG*CAAG1
UGAG*CAAA1
UAAA*UGAA1
GGAG*CAAC1
GGAAAG*CGAC1
AGAACG*CAAU1
UAAA*UGACA1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GA14
GA*AA3
AU*AU1
AA*AA1
AA*GAC1
GAAC*AA1
AA*GA1
GAAA*GA1
CA*AA1

Mutual discrepancy heat map legend: