Annotations
  • Double sheared (4)
  • Basepair signature
    cWW-tSH-tHS-cWW
    Intraclusteral linkage
    Min 0.07 | Avg 0.36 | Max 0.82
    Help
    #D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
    #D#SLoop idPDBDisc#Non-coreAnnotation 1 2 3 4break 5 6 7 81-71-82-72-83-64-56-7
    2313U5H0.53280 A3342G3343A3344G3345*C3360G3361A3362U3363cWWntSStHScWW
    2123DIR0.43350 C70G71A72G73*C19G20A21G22cWWtSHtHScWW
    1934A1B0.37050 A3300G3301A3302G3303*C3316G3317A3318U3319cWWtSHtHScWW
    2041S720.37650 C2873G2874A2875G2876*C2881G2882A2883G2884cWWtSHtHScWW
    1853U5F0.35960 A1744G1745A1746G1747*C1653G1654A1655U1656cWWtSHtHScWW
    2262AW70.46390 G1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
    1372XZM0.26611 U37A38A39A40*U458G459C461A462cWWtSHtHScWW
    1784A1B0.28830 G125A126A127G128*C138A139A140C141cWWntSHncSWtHScWWncSH
    693D0U0.16950Double shearedC16G17A18G19*C67G68A69G70cWWtSHtHScWW
    15101FJG0.28040 G1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
    9114A1B0.23660 G254G255A256G257*C162A163A164C165cWWtSHtHScWW
    11123U5H0.25862 A3139G3140A3141G3144*C3004A3005A3006U3007cWWtSHtHScWW
    10134A1B0.25112 G3128G3129A3131G3133*C2993G2994A2995C2996cWWtSHtHScWW
    16143U5F0.28270 G196A197A198G199*C186G187A188C189cWWtSHncSWtHScWW
    14152QBG0.26760 G536G537A538G539*U554G555A556C557cWWtSHtHScWW
    7162XZM0.17570 U1682A1683A1684A1685*U1640G1641A1642A1643cWWtSHtHScWW
    8173U5F0.21290 C1729A1730A1731A1732*U1669G1670A1671G1672cWWtSHtHScWW
    2181SA90.10490 C103G104A105G106*C111G112A113G114ntWHcWWtSHtHScWW
    1191SAQ0.00000Double shearedC103G104A105G106*C111G112A113G114ntWHcWWtSHtHScWW
    4202QBG0.13210 C2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
    3213V2F0.11760 C2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
    5224IOA0.14260Double shearedC2329G2330A2331G2332*C2343G2344A2345G2346cWWtSHtHScWW
    12234IOA0.26350Double shearedU1530C1531A1532G1533*C1491A1492A1493G1494cWWntSHtHScWW
    24242IL90.69010 A6058A6059U6060A6061*U6018A6019U6020U6021cWWtSHncSWncWWcWW

    3D structures

    Complete motif including flanking bases
    SequenceCounts
    CGAG*CGAG8
    GGAG*UGAC3
    AGAG*CGAU2
    UGAA*UAAA1
    UGAG*CAAA1
    UCAG*CAAG1
    CGAC*GAAG1
    AAUA*UAUU1
    GGAG*CAAC1
    CGAU*AGAG1
    UAAA*UGACA1
    GAAG*CAAC1
    AGAACG*CAAU1
    GGAAAG*CGAC1
    Non-Watson-Crick part of the motif
    SequenceCounts
    GA*GA14
    GA*AA4
    CA*AA1
    AU*AU1
    GAAA*GA1
    GAAC*AA1
    AA*GAC1
    AA*AA1

    Coloring options:

    Mutual discrepancy heat map legend: