Motif IL_24024.1 Version IL_24024.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-2 | 1-3 | 1-4 | 1-10 | 4-10 | 5-6 | 5-10 | 6-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J7Q | 0.2796 | 7 | 5S rRNA | A | 32 | U | 33 | C | 34 | U | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | U | 45 | ncSH | cWW | cWS | cWW | ntSW | ||||
| 2 | ➜ | 3J92 | 0.1970 | 7 | 5S rRNA | A | 32 | U | 33 | C | 34 | U | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | U | 45 | ncSH | cWW | cWS | cWW | ntSW | ||||
| 3 | ➜ | 1MJI | 0.1697 | C | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | ntSW | cWW | cWS | cWW | ntSW | |||
| 4 | ➜ | 4V8P | 0.1627 | G3 | 5S rRNA | A | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | A | 43 | C | 44 | U | 45 | ncSH | cWW | ncWS | cWW | ntSW | ||||
| 5 | ➜ | 3J9W | 0.0000 | BB | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 42 | A | 43 | A | 44 | C | 45 | A | 46 | ncSH | ncSH | cWW | cWS | cWW | ntSW | |||
| 6 | ➜ | 1S72 | 0.1462 | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | ncSH | cWW | cWS | cWW | ntSW | |||
| 7 | ➜ | 4V8C | 0.1525 | AB | 5S rRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | A | 48 | cSH | cSH | cWW | cWS | cWW | ntSW | |||
| 8 | ➜ | 4WFA | 0.1783 | Y | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 42 | A | 43 | A | 44 | C | 45 | A | 46 | ncSH | cWW | cWS | cWW | ntSW | ||||
| 9 | ➜ | 4U4U | 0.1855 | 7 | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | ntSW | ||||
| 10 | ➜ | 4U26 | 0.3478 | BB | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | cWW | cWS | cWW | ntSW | |||||
| 11 | ➜ | 5DM6 | 0.3657 | Y | 5S rRNA | A | 36 | C | 37 | C | 38 | C | 39 | C | 40 | * | G | 46 | A | 47 | A | 48 | C | 49 | U | 50 | ncSH | cWW | ncWS | cWW | cSS | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GAACA | 3 |
| ACCCC*GAACU | 3 |
| AUCUC*GAUCU | 2 |
| UUCCC*GAUCA | 1 |
| AUCCC*GAACU | 1 |
| UACCC*GAACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCC*AAC | 4 |
| CCC*AAC | 3 |
| UCU*AUC | 2 |
| UCC*AUC | 1 |
| ACC*AAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cSH-L-cWS-tSW-R-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.24 | Max 0.46
Coloring options: