Description:
Triple sheared (tSH-tHS-tHS) no inserted bases | Double sheared with wobble cWW. | Triple sheared (tSH-tHS-tHS) no inserted bases | SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
Basepair signature:
cWW-tSH-tHS-tHS-cWW
Free text annotation:
No inserted nucleotides. | Two different groups | This is one family. 3UXR has A in syn which is wrong | No inserted nucleotides.
Intraclusteral linkage
Min 0.09 | Avg 0.48 | Max 0.99
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDisc 1 2 3 4 5break 6 7 8 9 101-81-91-102-32-82-92-103-84-64-74-85-65-78-98-10
1311VW30.0000C2902A2903A2904A2905U2906*A3112U3113A3114A3115G3116cWWtSHtHSntHScWW
2324W210.2026C2589G2590A2591U2592C2593*G2752G2753G2754A2755G2756cWWtSHtHSnbiftHScWWncSH
351S720.2129C2515G2516A2517C2518C2519*G2501C2502A2503A2504G2505cWWtSHtHScWW
4334QCN0.2198C1904G1905A1906A1907C1908*G1887G1888G1889A1890G1891cWWtSHtHStHScWW
5344IOA0.2362C1865G1866A1867A1868A1869*U1848G1849G1850A1851G1852cWWntSHtHStHScWW
6352A640.2677C378G379A380A381G382*C347G348G349A350G351cWWntSHtHSntHScWW
7283U5H0.2872U1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
871U6B0.2916G56A57A58A59C60*G84C85A86A87C88cWWtSHtHScWWncWW
9364BPP0.2922G1672A1673A1674A1675A1676*U1649G1650G1651A1652C1653cWWtSHtHStHScWW
10261VX60.3011U1800G1801A1802A1803C1804*G2028G2029G2030A2031A2032ntSHcWWtSHtHStHScWW
11232QBG0.3062U1720G1721A1722G1723G1724*U1736G1737G1738A1739G1740cWWtSHtHSntHScWW
12274CUV0.3086U1645G1646A1647A1648U1649*A1806G1807G1808A1809A1810cWWtSHtHStHScWW
1342AW70.3091C1259G1260A1261C1262C1263*G1272C1273A1274A1275G1276cWWtSHtHSbifcWW
1482QBG0.3183C2480G2481A2482C2483G2484*C2466C2467A2468A2469G2470cWWtSHtHSbifcWW
15372A640.3243C284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
1694A1B0.3282C2837G2838A2839C2840G2841*C2823C2824A2825A2826G2827cWWtSHtHSbifcWW
17304FAW0.3350C70U71A72A73C74*G113G114A115C116G117cWWntSHntHStHScWW
1864W230.3450U1733G1734A1735G1736G1737*U1797C1798G1799A1800A1801ntSHcWWcSHtSHtHSncWWcWW
19383DHS0.3552C284G285A286A287G288*C297G298G299A300G301cWWcSHtSHntHStHScWW
20104IOA0.3618C2459G2460G2461C2462G2463*C2445C2446G2447A2448G2449cWWtSHntHScWW
21114QCN0.3635C2492G2493G2494C2495G2496*C2478C2479G2480A2481G2482cWWtSHntHSbifcWW
22253IWN0.3728C12A13A14A15C16*G31G32A33C34G35cWWntSHntHStHScWWncSH
23294A1B0.3772U3217U3218A3219A3220C3221*G3189A3190G3191C3192G3193cWWntSHntHStHScWW
24204QCN0.3810U750G751A752A753G754*U771G772G773A774G775ntSHcWWtSHtHStHScWW
25221S720.3830U794G795A796A797G798*U815G816G817A818A819cWWtSHtHStHScWW
26192QBG0.3882U703G704A705A706G707*U724G725G726A727G728cWWtSHtHStHScWW
27403U5F0.3970A1719G1720A1721A1722U1723*A1678G1679G1680A1681U1682cWWntSWtHStHScWW
28211VX60.4080U953G954A955A956G957*U974G975G976A977G978cWWtSHtHStHScWW
29393J7A0.4094G2011G2012A2013A2014A2015*U1975G1976G1977A1978C1979cWWntSWtHStHScWW
30173U5H0.4111U834G835A836A837G838*U855G856G857A858G859ntSHcWWtSHtHStHSntHScWW
31143U5H0.4137C2849G2850A2851C2852A2853*U2835C2836A2837A2838G2839cWWtSHntHScWW
32131VX60.4252C3208G3209A3210C3211G3212*C3194C3195A3196A3197G3198cWWtSHtHScWW
33243UCZ0.4332C22A23A24A25C26*G41G42A43C44G45cWWntSHtHScWW
34184CUV0.4363U834G835A836A837G838*U855G856G857A858G859ntSHcWWtSHtHStHSntHScWW
35154CUV0.4570C2849G2850A2851C2852A2853*U2835C2836A2837A2838G2839cWWtSHntHScWW
36164W210.4631C4426G4427A4428C4429G4430*C4412C4413A4414A4415G4416nbifcWWtSHntHScWW
3722QWY0.5319A46A47A48A49G50*C16G17U18A19U20cWWntSHtSHntHWtHScWW
38411S720.5350C663U664A665A666C667*G679G680G681A682G683cWWntWHtHScWWncHH
39422QBG0.5387U606U607A608A609C610*G618G619G620A621G622cWWntWHperptHScWW
40434QCN0.5523U629U630A631A632G633*C643G644G645A646G647perpcWWntWHtHScWWperpperp
41124W230.5590G207G208A209U210G211*C188U189G190A191C192cWWtSHtHSncWWncWWcWW
4234CUX0.6296C1495U1496U1497G1498G1499*U1508C1509U1510U1511G1512cWWncWWncWWntHWncWWncWWncWScWW
43444IOA0.6649U616U617A618A619G620*C629G630G631A632G633cWWtHScWW
4413J7A0.8426U1059G1060A1061A1062G1063*C1079G1080U1081A1082A1083cWWtSHntWWntHWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAAG*UGGAG5
CGACG*CCAAG4
CGAAG*CGGAG3
CAAAC*GGACG2
CGACA*UCAAG2
UUAAG*CGGAG2
CGGCG*CCGAG2
UGAAU*AGGAA2
CGACC*GCAAG2
CUAAC*GGGAG1
GGAAA*UGGAC1
AAAAG*CGUAU1
UUAAC*GGGAG1
CGAUC*GGGAG1
UGAAG*CGUAA1
CUUGG*UCUUG1
GGAUG*CUGAC1
AGAAU*AGGAU1
CGAAC*GGGAG1
CUAAC*GGACG1
UGAGG*UGGAG1
UGAAC*GGGAA1
GAAAA*UGGAC1
UGAGG*UCGAA1
CAAAU*AUAAG1
GAAAC*GCAAC1
UUAAC*GAGCG1
CGAAA*UGGAG1
UGAAG*UGGAA1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GGA16
GAC*CAA8
UAA*GGA4
AAA*GAC2
GGC*CGA2
AAA*GUA1
UAA*AGC1
UUG*CUU1
GAA*GUA1
GAU*UGA1
GAG*CGA1
AAA*CAA1
GAU*GGA1
AAA*GGA1
GAG*GGA1
UAA*GAC1
AAA*UAA1

Release history

Release1.18
Date2014-10-07
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_37976.1Only in the parent motif
IL_81965.1
Compare
IL_1VX6_113, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_024, IL_1S72_028, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_068, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_2AW7_058, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072IL_2QBG_019, IL_4CUV_035, IL_4W21_097, IL_4W21_140, IL_4W23_080, IL_4IOA_012, IL_4W23_013, IL_3J7A_047, IL_3DHS_004IL_4BPP_028, IL_1VWW_092, IL_1VWW_098, IL_1VWW_077, IL_4CUX_006, IL_3J7A_061, IL_4CUX_047, IL_1VX2_035, IL_1VX2_078
IL_24982.8
Compare
IL_2QBG_019, IL_4IOA_012, IL_3DHS_004, IL_3J7A_047IL_2AW7_058, IL_4CUV_035, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_4W23_080, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_1VW3_083, IL_4BPP_090, IL_2A64_005, IL_2A64_006, IL_1VX6_113, IL_3IWN_002, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_4IOA_089, IL_3U5F_091, IL_4W21_097, IL_4W21_140, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4W23_013, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072IL_1S72_055, IL_4IOA_026, IL_3U5F_035, IL_2QWY_004, IL_2QBG_058, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_2QBG_052, IL_4BPP_035, IL_4BPP_049, IL_2AW7_030, IL_4QCN_049, IL_4IOA_051, IL_3U5F_053
IL_73348.1
Compare
IL_4CUV_035IL_2AW7_058, IL_4W21_140, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_4W23_080, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_3J7A_047, IL_4BPP_090, IL_2A64_005, IL_1VW3_083, IL_2A64_006, IL_1VX6_113, IL_3IWN_002, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_4IOA_089, IL_3U5F_091, IL_4W21_097, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4IOA_012, IL_4W23_013, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072, IL_3DHS_004IL_1VWW_063

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: