Motif IL_50340.1 Version IL_50340.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-5 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J79 | 0.3721 | 0 | A | LSU rRNA | G | 2215 | G | 2216 | * | U | 2391 | A | 2392 | A | 2393 | C | 2394 | cWW | cWW | ||
| 2 | ➜ | 5AJ0 | 0.0000 | 0 | A2 | LSU rRNA | G | 2875 | G | 2876 | * | C | 3573 | G | 3574 | A | 3575 | C | 3576 | ncWH | cWW | cWW | |
| 3 | ➜ | 4V91 | 0.2603 | 0 | 1 | LSU rRNA | G | 1947 | G | 1948 | * | C | 2098 | A | 2099 | A | 2100 | C | 2101 | cWW | cWW | ||
| 4 | ➜ | 4V88 | 0.2993 | 0 | A5 | LSU rRNA | G | 1947 | G | 1948 | * | C | 2098 | A | 2099 | A | 2100 | C | 2101 | ncWH | cWW | cWW | |
| 5 | ➜ | 3J9W | 0.8081 | 2 | BA | LSU rRNA | U | 336 | G | 338 | * | C | 387 | A | 388 | A | 389 | A | 391 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*CAAC | 2 |
| UAG*CAAAA | 1 |
| GG*CGAC | 1 |
| GG*UAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 3 |
| A*AAA | 1 |
| *GA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: