Motif IL_53634.1 Version IL_53634.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J7P | 0.1892 | 0 | 5 | LSU rRNA | A | 2844 | A | 2845 | G | 2846 | * | C | 3842 | C | 3843 | U | 3844 | cWW | tWW | cWW | ||
| 2 | ➜ | 4V8P | 0.1233 | 0 | F1 | LSU rRNA | A | 1919 | A | 1920 | G | 1921 | * | C | 2333 | C | 2334 | U | 2335 | cWW | tWW | cWW | ||
| 3 | ➜ | 3J79 | 0.0800 | 0 | A | LSU rRNA | A | 2163 | A | 2164 | G | 2165 | * | C | 2631 | C | 2632 | U | 2633 | cWW | tWW | cWW | ||
| 4 | ➜ | 4V88 | 0.0000 | 0 | A5 | LSU rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | ||
| 5 | ➜ | 4V91 | 0.1085 | 0 | 1 | LSU rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | ||
| 6 | ➜ | 5AJ0 | 0.1147 | 0 | A2 | LSU rRNA | A | 2823 | A | 2824 | G | 2825 | * | C | 3813 | C | 3814 | U | 3815 | cWW | tWW | cWW | ||
| 7 | ➜ | 5J7L | 0.1447 | 0 | Isolated tWW turn | DA | LSU rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW | |
| 8 | ➜ | 4V19 | 0.1772 | 0 | A | LSU rRNA | A | 796 | A | 797 | A | 798 | * | U | 988 | C | 989 | U | 990 | cWW | tWW | cWW | ||
| 9 | ➜ | 4V9F | 0.1122 | 0 | Isolated tWW turn | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW | |
| 10 | ➜ | 3JCS | 0.2220 | 0 | 2 | LSU rRNA | C | 79 | A | 80 | G | 81 | * | C | 584 | C | 585 | G | 586 | cWW | tWW | cWW | ||
| 11 | ➜ | 5FDU | 0.2437 | 0 | 1A | LSU rRNA | C | 1710 | A | 1711 | A | 1712 | * | U | 2017 | C | 2018 | G | 2019 | cWW | tWW | cWW | ||
| 12 | ➜ | 5FDU | 0.7373 | 1 | 1A | LSU rRNA | U | 1479 | A | 1480 | G | 1481 | * | C | 1604 | A | 1605 | G | 1607 | cWW | tWW | cWW | ||
| 13 | ➜ | 3Q1Q | 0.9434 | 1 | B | RNase P RNA | G | 198 | G | 199 | U | 201 | * | A | 179 | G | 180 | C | 181 | cWW | cWW | |||
| 14 | ➜ | 3LOA | 0.9227 | 1 | Decoding loop with one bulged A | B+A | RNA (23-mer) | G | 1491 | A | 1493 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | ncHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAG*CCU | 6 |
| UAG*CAGG | 1 |
| GGCU*AGC | 1 |
| GAAG*CAC | 1 |
| CAA*UCG | 1 |
| CAG*CCG | 1 |
| GAA*UCC | 1 |
| AAA*UCU | 1 |
| UAG*CCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 11 |
| AA*A | 1 |
| A*AG | 1 |
| GC*G | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated tWW turn (2)
- Decoding loop with one bulged A (1)
- Basepair signature
- cWW-tWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.43 | Max 1.00
Coloring options: