Description:
Kink-turn
Basepair signature:
cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.09 | Avg 0.47 | Max 0.85
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7break 8 9 10 11 121-51-122-32-113-44-54-94-115-95-105-126-86-96-107-88-1011-12
1193GX50.00001C31G32A33G35A36A37A38*U17G18G19A20G21cWWncSSntSSncSHtSHtHStHScWW
2183V7E0.14961C231G232A233G235A236A237A238*U217G218G219A220G221cWWtSHtHScWW
3204QCN0.15771C1253G1254A1255G1257A1258A1259G1260*U1280G1281G1282A1283G1284cWWncSStSStSHtHSperptHScWWperp
4213U5H0.21951U1388G1389A1390G1392A1393A1394G1395*U1415C1416G1417A1418A1419cWWncSStSStSHtHStHScWWperp
5224CUV0.22401U1388G1389A1390G1392A1393A1394G1395*U1415C1416G1417A1418A1419cWWncSStSStSHtHStHScWWperp
6174KQY0.24841C31G32A33G35A36A37G38*C17A18G19A20G21cWWncSSntSSncSHtSHtHSntHScWW
7234W210.25871C2302C2303U2304G2306A2307A2308G2309*U2329G2330G2331A2332G2333cWWncSHntHSntHScWWperp
8164C4W0.27101U26G27A28G30A31C32C33*G3C4A5A6G7cWWntSStSHtHSntHScWW
9261S720.30391G1312A1313U1314G1316A1317A1318G1319*U1338G1339G1340A1341C1342cWWtSStSHtHStHScWWncSS
10281VX60.30721U1536G1537U1538G1540A1541A1542G1543*U1563G1564G1565A1566A1567cWWtSStHStHScWW
11254IOA0.31751C1221G1222G1223G1225A1226A1227G1228*U1247G1248G1249A1250G1251cWWncSHtSHtHStHScWW
12242QBG0.31961C1208U1209G1210G1212A1213A1214G1215*U1234G1235G1236A1237G1238cWWntSStSHtHStHScWW
13294QCN0.33421C2151U2152G2153G2155A2156A2157C2158*G2177G2178G2179A2180G2181cWWncSSncSHtSHtHSperpncWSntHScWWperp
14274A1B0.33451C1414C1415U1416G1418A1419A1420G1421*U1441G1442G1443A1444G1445cWWntSStSHtHSperptHScWWperp
15154AOB0.33641U31G32A33G35A36C37C38*G17C18A19A20G21cWWncSSntSSncSHtSHntHScWW
16111T0K0.34711C54A55G56G58A59U60G61*C9G10G11A12G13cWWtSStSHntHSntHScWW
17141S720.35151C93G94A95G97A98A99C100*G77G78G79A80G81cWWtSHtHStSStHScWW
18124GXY0.35241C139G140A141G143A144U145C146*G82G83G84A85G86cWWncSStSHntHSntSSntHScWWncSS
19134QCN0.39571C96G97U98G100A101U102C103*G80G81G82A83G84cWWtSStSHntHStSStHScWWncSS
2094IOA0.46681C96U97U98G100A101C102U103*A80C81G82A83G84cWWtSStSHntHStSScWWncSS
21104GMA0.46961G143G144A145G147A148G149U150*A93G94G95A96C97cSScWWncSHtSHtHStSStHScWW
2283U5F0.49591C910U911U912G914A915U916U917*G895U896C897A898G899cSScWWntSStSHntHStSSntHWntHWcWW
2371S720.54832C1026G1027U1028G1031A1032C1033G1034*C936C937G938A939G940cWWntSStSHntHStSScWW
2413RW60.61794C43A44A45G47A48C49G50*U11A12C16A17G18cWWtSStSHtHWntSScWWcWWncSS
2553J7A0.68322C354U355A356G358A359C360G361*U317A318C320A321G322cSScWWtSStSHtHWtSScWWcWW
2662AW70.69432C277G278A279G281A282U283C284*G242A243U245A246G247cSScWWncSHtSHtHWtSScWWcWW
2743U5F0.71692U348U349U350A352A353C354G355*U311A312C314A315A316cWWtSSntSHtHWcWWcWW
2834BPP0.72262C339A340G341C343A344C345G346*U302A303C305A306G307cSScWWtSSperpntSHntSHtHWtSScWWcWWncSS
2924W230.77092U396G397A398C400A401C402G403*U359A360C362A363A364cSScWWntSSncSWtHWnbiftSSncWWncWWcWWncSHncSS

3D structures

Complete motif including flanking bases
SequenceCounts
UGACGAAG*UCGAA2
UGAUGACC*GCAAG2
GUCAG*CUUGGAUU1
CGUUUGACG*CCGAG1
GGAUGAGU*AGGAC1
CUUUGACU*ACGAG1
CGUGGAUC*GGGAG1
CAAUGACG*UAAGACAG1
CUAUGACG*UAUCAG1
UGACCACG*UAUCAA1
UAUCAA*UUUCAACG1
CGACGAUC*GAUUAG1
CGAGGAUC*GGGAG1
CAGUCACG*UAUCAG1
CAGAGAUG*CGGAG1
CCUUGAAG*UGGAG1
GAUGGAAG*UGGAC1
CGACGAAG*CAGAG1
CGAUGAAG*UGGAG1
CGAUGAAA*UGGAG1
UGUUGAAG*UGGAA1
CGGAGAAG*UGGAG1
CGACGAAA*UGGAG1
CCUAGAAG*UGGAG1
CUGUGAAC*GGGAG1
CUGCGAAG*UGGAG1
CGAAGAAC*GGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAUGAC*CAA2
GACGAA*CGA2
GAUGAA*GGA2
UCA*UUGGAU1
GUUUGAC*CGA1
UUUGAC*CGA1
AAUGAC*AAGACA1
GAUGAG*GGA1
AUCA*UUCAAC1
GACCAC*AUCA1
AGUCAC*AUCA1
GUGGAU*GGA1
GACGAU*AUUA1
UAUGAC*AUCA1
AGAGAU*GGA1
GUUGAA*GGA1
AUGGAA*GGA1
CUUGAA*GGA1
GACGAA*AGA1
GGAGAA*GGA1
UGCGAA*GGA1
GAAGAA*GGA1
GACGAA*GGA1
CUAGAA*GGA1
UGUGAA*GGA1
GAGGAU*GGA1

Release history

Release1.18
Date2014-10-07
StatusUpdated, 1 parent

Parent motifs

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: