Description:
No description added yet.
Basepair signature:
cWW-cWW-cWW-cWW
Free text annotation:
Stacked cWW-cWH pairs
Intraclusteral linkage
Min 0.06 | Avg 0.48 | Max 1.02
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4break 5 6 7 81-21-41-71-82-62-72-83-43-53-63-74-54-64-75-65-87-8
1524V910.00000U3300U3301U3302G3303*C3311U3312U3313A3314cWWcWWncWWcWW
2534V880.13320U3300U3301U3302G3303*C3311U3312U3313A3314cWWcWWncWWcWW
3473J9M0.16030A1540U1541U1542U1543*A1507C1508U1509U1510cWWcWWcWWcWW
4514BTS0.17380U1635C1636U1637G1638*C1687C1688U1689A1690cWWncWWcWWcWW
5543J790.19150U633U634U635U636*A519U520U521A522cWWcWWcWWcWW
6693J7A0.21560U308U309U310C311*G111U112U113A114cWWcWWcWWcWW
7613R2D0.21850C6U7U8G9*C6U7U8G9cWWcWWcWWcWW
8683JAM0.22140U301U302U303C304*G109U110U111A112cWWcWWcWWcWWcWWcWW
9504V190.22480U92U93U94U95*A70U71U72A73cWWcWWncWWcWW
10484BTS0.22610A1676A1677U1678A1679*U1646U1647C1648U1649cWWncWWcWWncWWcWW
11734V8P0.22700U3260U3261U3262G3263*C3271U3272U3273A3274cWWcWWcWWcWW
12595C5W0.24370C15U16A17G18*C2^C3^U4^G5^cWWcWWcWWcWW
13605C5W0.24370C15^U16^A17^G18^*C2C3U4G5cWWcWWcWWcWW
14493JCS0.24610C753U754U755C756*G683C684G685G686cWWncWWncSWcWWcWW
1563280D0.24610C29U30U31G32*C41U42U43G44cWWcWWcWWcWW
16462PN40.24960G102U103C104G105*C62U63U64C65cWWcWWcWWcWW
17624V880.25080C3235U3236U3237G3238*C3249U3250U3251G3252ncWWcWWncWWcWWcWW
18643J790.25400U263U264U265U266*A165U166U167A168cWWcWWcWWcWW
19554V910.25670C3249U3250U3251G3252*C3235U3236U3237G3238cWWcWWncWWncWWcWW
20584EYA0.25810C6U7U8G9*C6U7U8G9cWWcWWcWWcWW
21725AJ00.26270U4930U4931C4932G4933*C4941C4942U4943G4944cWWcWWcWWcWW
22573JAM0.26460U1721C1722U1723G1724*C1673U1674C1675A1676cWWcWWcWW
23875AJ30.26870G910A911A912G913*C857C858U859C860cWWncWWncWWcWW
24453TZR0.27520G102U103C104G105*C62U63U64C65cWWcWWcWWcWW
25674V910.27810C3039A3040U3041U3042*A3012U3013U3014G3015cWWncWWcWWcWW
26655AJ30.28306U230U237C238U239*A264U265U266A267cWWcWWcWWcWW
27444IOA0.28320G1196U1197C1198U1199*A1175U1176U1177C1178cWWcWWcWWcWW
28893J790.28500C3705U3706U3707U3708*A3694C3695U3696G3697cWWncWWncWWcWWcWW
29153J7P0.28550C856U857A858G859*U804U805U806G807cWWcWWncWWncWW
30704V880.28720U302U303U304C305*G109U110U111A112cWWcWWcWWcWWcWWcWW
311123J7P0.29050A1746U1747U1748A1749*U1781U1782C1783U1784cWWncSWcWWcWW
32434UYK0.29260G117U118U119C120*G81U82U83C84cWWcWWcWWcWW
33714BTS0.29310U293U294U295C296*G105U106U107A108cWWcWWcWWcWW
34564V880.29980U1723U1724U1725G1726*C1675U1676C1677A1678cWWncSWcWWcWW
35109402D0.31280C103C104A105G106*C111C112A113G114cWWcWWcWWcWW
36334V8P0.31790U2724A2725C2726A2727*U2707U2708G2709A2710cWWcWWcWWcWW
37355J7L0.31830C1114G1115G1116C1117*G1038A1039A1040G1041cWWcWWcWWcWW
3874361D0.31840C93C94U95G96*U80G81G82G83cWWcWWcWW
39365G2X0.31930C2407U2408C2409C2410*G2415G2416G2417G2418cWWncWWncWWcWW
40245EW40.32020C8C9C10G11*C14C15C16G17cWWcWW
411104V880.32040A1006U1007U1008A1009*U1041U1042C1043U1044cWWncSWcWWcWW
42343J9W0.32810U1433A1434A1435C1436*G1483G1484G1485A1486cWWcWWcWWcWW
431115AJ00.32850A1728U1729U1730A1731*U1763U1764C1765U1766cWWncSWcWWcWW
44665EW40.33140C14C15C16G17*C8C9C10G11cWWcWWcWW
45234K270.33700C4C5U6G7*C49C50U51G52cWWcWWcWWcWW
46214K270.34250C12C13U14G15*C41C42U43G44cWWcWWcWWcWW
47424V910.34400G241C242G243G244*C174C175G176U177cWWncWWcWWcWW
48754EYA0.34440C6U7U8G9*C6U7U8G9cWWcWWcWWcWW
49305A2Q0.34661C931G932G934G935*C1007A1008A1009G1010cWWcWWcWWcWW
50225A2Q0.35241A545G546C548C549*G535A536C537U538cWWcWWcWWcWW
51915AJ00.35400G161A162C163C164*G263U264C265U266cWWcWWncWWcWW
52883J7A0.35670A883G884C885U886*G916C917U918U919cWWncWSncWWcWWncWW
53863JAN0.35710G156A157C158C159*G138A139C140C141cWWncWWncWWncWWncWWcWW
54195A2Q0.35970C62U63U64C65*G102U103C104G105cWWcWWcWWcWW
55163J7P0.36121A4535C4536C4537G4538*C4547G4549G4550U4551ncWWncWWncWWncWWncWH
56414V880.36191G957U958U960U961*G867G868A869C870cWWntSHncSWcWW
57273JAM0.36261C873G874G876G877*C949A950A951G952cWWcWWcWWcWWcWW
58394BTS0.36331G935U936U938U939*G845G846A847C848cWWncWWncSWcWW
59851D4R0.36340G22^A23^C24^C25^*G4A5C6C7cWWncWWncWWcWW
60841D4R0.36340G22A23C24C25*G4^A5^C6^C7^cWWncWWncWWcWW
61204K270.36430C8C9U10G11*C45C46U47G48cWWcWWcWWcWW
62934P8Z0.36620A181G182A183C184*G5G6G7U8watcWWcWWcWW
63903WBM0.37030G14A15C16U17*A10C11C12C13cWW
64825AJ00.37330G1742G1743C1744C1745*G1751A1752U1753C1754cWWncWWncWSncWWncWWcWW
65924P9R0.37430A15G16A17C18*G223G224G225U226watcWWcWWcWW
66293J7P0.37581C931G932G934G935*C1007A1008A1009G1010cWWcWWcWWcWW
67325AJ00.37790U4257U4258G4259A4260*U4274A4275C4276A4277cWWcWWcWWcWW
68264BTS0.38211U852G853G855G856*C928A929A930A931cWWcWWcWWcWW
69374V880.38230U2718U2719G2720A2721*U2735A2736C2737A2738cWWncWWcWWcWW
70405A2Q0.38811G1014U1015U1017U1018*G924G925A926C927cWWncWWncSWcWW
71313J7P0.38940U4295U4296G4297A4298*U4312A4313C4314A4315cWWcWWcWW
72284V880.39791C874G875G877G878*C950A951A952G953cWWcWWcWWcWW
73114ZC70.39840C7G8U9U10*A38A39A40G42cWWcWWncWWncWWcWW
74955A2Q0.40440A981G982A983C984*G942U943A944U945cWWcWWncWSncWWcWW
75384V910.40780U2718U2719G2720A2721*U2735A2736C2737A2738cWWncWWcWWcWW
76973JAM0.41270A923G924A925C926*G884U885A886U887cWWcWWncWWncWWcWW
771154V880.42310C1495U1496U1497G1498*C1509U1510U1511G1512cWWcWWncWWcWW
78143JAM0.42330C797A798U799G800*U748U749U750G751cWWncWWncWWncWWcWW
79773WBM0.42720A10C11C12C13*G14A15C16U17cWWcWW
80831JID0.43550G156A157C158C159*G138A139C140C141cWWncWWncWWncWWncWWcWW
81815A2Q0.43890C1098G1099A1100U1101*G1131C1132A1133G1134cWWcWWncWWcWW
82105A2Q0.44001C1708G1709C1710U1711*A1822A1823A1824G1826cWWcWWncWWcWW
83963J7A0.44010A993G994A995C996*G954U955A956U957cWWcWWncWWcWW
841134V8P0.44140U1067U1068C1069U1070*A1032U1033U1034A1035cWWcWWncWScWW
851014BTS0.44570A931G932A933U934*A849G850U851U852cWWncWWcWWcWW
86254GMA0.44600U205G206A207A208*U186U187C188G189cWWncWWncWWcWW
871063J790.45390C672U673U674A675*U658U659U660G661cWWncHWcWWcWW
881075AJ30.45410C629A630A631A632*U652A653A654G655cWWncSWntHScWW
8993J7P0.45771C2325G2326G2327G2328*C2310C2311U2312G2314ncWHncWWncWWncWWcWWncWH
90944V880.45780A924G925A926C927*G885U886A887U888cWWcWWncWWcWW
91764EYA0.45870C6U7U8G9*C6U7U8G9cWWcWWcWWcWW
92183J7A0.45900C1605U1606U1607G1608*C1455G1456A1457G1458ncWWncWWncWWncWWcWW
93994V880.46900G953G954A955C956*G871G872U873C874cWWncWWcWWcWW
94794BTS0.47340G1019G1020A1021U1022*G1046C1047A1048C1049cWWcWWncWWcWW
951085A2Q0.47910U566C567C568A569*U581U582A583A584cWWntSHntHScWW
961054WFA0.48000U107G108C109C110*G5U6G7A8cWWncHWncWWcWW
971003JAM0.48220G952G953A954C955*G870G871U872C873cWWncWWcWWcWW
981163J7A0.49000C1791U1792C1793C1794*G1805U1806A1807G1808cWWncWWntHScWW
991043J7P0.49161C1395A1396G1398C1399*G1447A1448G1449G1450ncWWcWWncHWcWWcWW
100783JAM0.49180G1040G1041A1042U1043*G1073C1074A1075C1076cWWcWWncWWcWW
101173J7P0.49250C1230C1231U1232G1233*C1525G1526C1527G1528cWWncWWncWHncWWncWH
102804V880.49450G1041G1042A1043U1044*G1074C1075A1076C1077cWWcWWncWWcWW
10344FWT0.49600C2003U2004A2005C2006*G2103U2104A2105G2106ncWWncWWntHScWWncWW
104985A2Q0.49850G1010A1011A1012U1013*G928G929C930C931cWWcWWncWWcWW
105124V910.50390U1071G1072U1073U1074*A1084A1085C1086G1087cWWncWWncWWcWWncWW
1061143JAM0.51180C1493U1494U1495G1496*C1507U1508G1509G1510cWWncWWntHWcWW
10783J9W0.51671U749G750G751U752*A671A672G673G675cWWcWWcWW
1081023J7P0.54077A599G606C608U609*A634G635C636U637ncWWcWWncHWncWWncWW
10971G1X0.55341U740G741G742U743*G662A663G664G666cWWcWWcWW
11061G1X0.56921U740G741G742U743*G662A663G664G666cWWcWWcWW
11151FJG0.58031U740G741G742U743*G662A663G664G666cWWcWWcWW
1121035A2Q0.60151C1395A1396G1398C1399*G1447A1448G1449G1450ncWWcWWncHWcWWcWW
11335AJ00.61451G437G438U439C440*G1283C1284U1285C1287cWWncWWcWW
114135A2Q0.63700U1560A1561C1562G1563*C1572G1573C1574G1575cWWcWWcWWcWW
11515J7L0.64061G1432A1433A1434G1435*C1557C1558G1560C1561cWWcWWtWWcWW
11623J7P0.68541G1428G1429C1430G1431*C1415C1416C1417C1419cWWncWWcWH

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG8
UUGA*UACA4
GACC*GACC4
UUUC*GUUA4
CGGGG*CAAG4
AGAC*GUAU4
UUUG*CUUA3
GGAU*GCAC3
CCUG*CCUG3
AUUA*UUCU3
GUUUU*GGAC3
UUUU*AUUA3
UGGU*GAGAG3
CCCG*CCCG2
GGAC*GGUC2
CUAG*CCUG2
CAUGC*GAGG2
GUCG*CUUC2
AGAC*GGGU2
CAAA*UAAG1
CAUG*UUUG1
ACCC*GACU1
CUUA*UUUG1
CGAU*GCAG1
CGCU*AAAAG1
UGAA*UUCG1
UUCU*AUUA1
AGAU*AGUU1
UGCC*GUGA1
AGGGCAAGUCU*AGCU1
UGGU*AAGAG1
GGUC*GCUAC1
UACG*CGCG1
GGCG*CCCCC1
GAAG*CCUGC1
CUUG*CUGG1
UGUU*AACG1
UCCA*UUAA1
CUUG*CGAG1
CUCC*GUAG1
CCUG*CGCG1
GAAU*GGCC1
CUAC*GUAG1
CGGG*CCUAG1
ACCG*CAGGU1
UGGUAAAUCU*AUUA1
CAUU*AUUG1
GUCU*AUUC1
CUUU*ACUG1
GUUC*GUUC1
CUAG*UUUG1
GAAG*CCUC1
UCUG*CUCA1
UCUG*CCUA1
AUUU*ACUU1
AAUA*UUCU1
CUUC*GCGG1
UUCG*CCUG1
UUUG*CUCA1
CCAG*CCAG1
AGCU*GCUU1
GACC*GUCU1
CUUC*GUCG1
GACU*ACCC1
UGGGG*CAAA1
GGCC*GAUC1
AGGCC*GACU1
GCGG*CCGU1
CGGC*GAAG1
UACA*UUGA1
CCUG*UGGG1
CUCC*GGGG1
UAAC*GGGA1
CGUU*AAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU20
UU*UC5
GGG*AA5
UG*AC4
AC*AC4
UC*UU4
GA*UA4
CU*CU4
GA*CA4
GG*AGA4
GA*GU3
UUU*GA3
CC*CC2
AU*UU2
GA*GG2
AUG*AG2
UU*CU2
UA*CU2
GC*UG1
UC*UA1
AU*UC1
CC*UA1
AA*AA1
GA*UC1
UU*GA1
GG*CUA1
UA*UA1
GU*CUA1
AC*GC1
AA*CUG1
GC*CCC1
GGGCAAGUC*GC1
UU*UG1
GC*AAA1
AA*GC1
GU*AC1
CU*GC1
UU*CG1
UC*GG1
AA*GG1
CG*CG1
GGC*AC1
CU*GG1
GG*AA1
GGUAAAUC*UU1
CA*CA1
AC*UG1
AC*UC1
GC*CU1
UC*CU1
GU*AA1
UA*UU1
GC*AU1
AC*CC1
AA*CU1
CC*AGG1
CU*UC1
CC*AC1

Release history

Release2.0
Date2017-04-24
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Coloring options: