Description:
C-loop
Basepair signature:
cWW-tWH-cSH-L-cWS-cWW
Free text annotation:
No annotation provided yet.
Intraclusteral linkage
Min 0.10 | Avg 0.40 | Max 0.98
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5break 6 71-31-41-72-32-42-52-62-73-43-74-64-75-6
1243U5F0.00002U1617C1618C1619C1620U1621*A1157A1160ncSHcWWcSHcSHtWHcWScWW
2234BPP0.11841U1589C1590C1591C1592U1593*A1130A1132ncSHcWWcSHncWHtWHncWScWScWW
3222QBG0.13001U2680C2681A2682C2683U2684*A2725A2727ncSHcWWcSHtWHcWScWW
4211KOG0.15371C96C97A98C99U100*A74G76cSHcWWcSHtWHncWScWW
5204W230.19112U1681C1682C1683C1684U1685*A1214A1217ncSHcWWcSHntSWtWHncWHncWSnbifcWScWW
6264QCN0.19131C2692C2693U2694C2695U2696*A2738G2740ncSHcWWcSHntSWtWHntHScWScWW
7274IOA0.21601C2659C2660G2661C2662U2663*A2705G2707cWWcSHtWHntHSncWScWW
8254JRC0.22191C29C30U31C32U33*A73G75cWWcSHntWHntHSncWScWW
9161S720.23831G1425C1426A1427C1428U1429*A1437C1439cWWcSHtWHcWScWW
10191VW30.25002G787C788A789A790U791*A835C838ncSHcWWcSHtWHncWWncWWcWScWW
1184QCN0.26132G911C912A913C914U915*A955C958tSWcWWcSHntSWtWHcWScWW
12182QBG0.26172G864C865A866C867U868*A909C912ncSHcWWcSHtWHcWScWW
1374IOA0.26542G877C878A879C880U881*A921C924tSWcWWcSHtWHcWScWW
14281VW30.27471C2947C2948C2949A2950U2951*A3061G3063ncSHcWWcSHtWHncWScWW
15174QCN0.28881G1365C1366A1367A1368U1369*A1377C1379cWWcSHtWHnbifcWScWW
16124CUV0.30423G999C1000A1002A1003U1004*A1046C1049ncSHcWWncSHntSWtWHncWWcWScWW
17113U5H0.30433G999C1000A1002A1003U1004*A1046C1049ncSHcWWncSHntSWtWHncWWcWScWW
18291S720.31391C2717C2718A2719C2720U2721*A2761G2763cWWncSHtWHntHSncWScWW
19104A1B0.33233G1025C1026A1028A1029U1030*A1072C1075ntSWcWWntSWtWHcWScWW
20131VX60.34973G1121A1122A1124A1125U1126*A1169C1172ncSHncSHcWWncSHntWHncWWcWScWW
21314MGN0.35411C29C30U31C32U33*A73G75cWWcSHntWHntHSncWScWW
22144W210.37151U2415G2416A2417A2418C2419*G2427A2429ncSHncWHcWWncSHntSHncWScWScWW
23302QBG0.37841C1319C1320A1321A1322C1323*G1331G1333cWWncSHntSWtWHntHScWScWW
2451FJG0.38070G371C372A373A374U375*A389C390cWWncSHntWHcWScWW
2562AW70.38210A371C372A373A374U375*A389U390ncSHcWWncSHntWHcWScWW
2694W210.38303G1739C1740A1742A1743U1744*A1786C1789ntSWcWWncSHntSWtWHncSHnbifcWScWW
2734W230.38780C491C492A493C494U495*A508G509ntSWncSHcWWncWHtWHncWSncWScWW
28154IOA0.38831G1332G1333A1334A1335G1336*C1344C1346ncSHcWWcWScWW
2944CUX0.43430C443C444A445A446U447*A460G461ncSHcWWncWHcWScWW
3024A1C0.53800U52U53A54A55G56*C26A27ncSHcWWperpperpncWWncWScWW
3111FJG0.89120C1128C1129A1130G1131C1132*G1142G1143ncSHcWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCGAAU*AAAC4
GCACU*AAAC3
CCUCU*ACG2
GCAAU*AC1
CCAAC*GGG1
UGAAC*GAA1
GAUAAU*AAAC1
ACAAU*AU1
UUAAG*CA1
CCAGC*GG1
CCAAU*AG1
GGAAG*CGC1
CCACU*AG1
CCACU*ACG1
GCAAU*AGC1
UCCCU*ACCA1
CCACU*AUG1
UCACU*AAA1
UCCCU*ACA1
CCUCU*AUG1
CCGCU*AUG1
CCCAU*AAG1
GCAAU*AAUC1
GCACU*AGC1
ACCA*UCCCU1
Non-Watson-Crick part of the motif
SequenceCounts
CGAA*AA4
CAA*3
CAC*AA3
CUC*C2
CAA*G2
CCC*C1
GAA*A1
AUAA*AA1
CAC*1
GAA*G1
CAG*1
UAA*1
CAC*C1
CAC*A1
CAC*G1
CCC*CC1
CGC*U1
CAA*AU1
CC*CCC1
CAC*U1
CCA*A1
CUC*U1

Mutual discrepancy heat map legend: