Motif IL_83561.1 Version IL_83561.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-11 | 2-12 | 3-11 | 4-5 | 4-10 | 5-9 | 5-10 | 6-9 | 6-10 | 7-8 | 7-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V91 | 0.2386 | 0 | 1 | LSU rRNA | U | 1737 | C | 1738 | U | 1739 | U | 1740 | A | 1741 | U | 1742 | G | 1743 | * | U | 1702 | U | 1703 | A | 1704 | U | 1705 | C | 1706 | A | 1707 | cWW | tWH | ntWW | cWW | cWW | ||||||||
| 2 | ➜ | 4V88 | 0.0000 | 0 | A5 | LSU rRNA | U | 1737 | C | 1738 | U | 1739 | U | 1740 | A | 1741 | U | 1742 | G | 1743 | * | U | 1702 | U | 1703 | A | 1704 | U | 1705 | C | 1706 | A | 1707 | cWW | tWH | ncSH | cWW | cWW | ||||||||
| 3 | ➜ | 3J9M | 0.6357 | 1 | AA | SSU rRNA | U | 974 | A | 975 | A | 976 | A | 977 | A | 978 | C | 979 | U | 980 | * | A | 1008 | C | 1009 | A | 1010 | A | 1012 | A | 1013 | A | 1014 | cWW | cWW | ncWW | tWH | ntHS | ncWS | cWW | ||||||
| 4 | ➜ | 4XEJ | 0.8413 | 0 | BIRE | CrPV IRES | C | 6153 | U | 6154 | C | 6155 | A | 6156 | A | 6157 | A | 6158 | C | 6159 | * | G | 6170 | U | 6171 | U | 6172 | G | 6173 | U | 6174 | G | 6175 | cWW | ntHW | ncWW | ncWW | ncWW | ncWW | ncWW | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUUAUG*UUAUCA | 2 |
| CUCAAAC*GUUGUG | 1 |
| UAAAACU*ACACAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUAU*UAUC | 2 |
| UCAAA*UUGU | 1 |
| AAAAC*CACAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-bif-tWH-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.24 | Avg 0.50 | Max 0.88
Coloring options: