Description:
Sarcin-ricin parent motif with 15 Nts
Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Free text annotation:
Complete Sarcin-ricin IL motif
Intraclusteral linkage
Min 0.08 | Avg 0.23 | Max 0.39
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-134-54-125-66-116-127-108-9
161Q960.00000C6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
251JBR0.08900C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
371Q960.10180C6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
443U5H0.14870C3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWntSHtSHtHHcSHtWHtHScWW
584A1B0.15590C80C81C82A83G84U85A86A87*U95G96A97A98C99A100G101cWWtSHtHHcSHtWHtHScWW
6103V2F0.18540C201U202C203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
792QBG0.19200C201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
834A1B0.19470G3007U3008U3009A3010G3011U3012A3013C3014*G3019G3020A3021A3022C3023A3024C3025cWWncSWntSHtHHncSHtWHtHScWW
922ZJR0.19720G215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWntSHntSHtHHcSHtWHtHScWW
10111S720.20050C171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcWWntSHtHHcSHtWHtHScWW
1114A1C0.21240G71U72U73A74G75U76A77C78*G98G99A100A101G102U103C104cWWntWHtHHcSHtWHtHScWW
12122ZJR0.21540C178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcWWtSHntHHcSHtWHntSHtHScWW
13153V2F0.27020A1262U1263G1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
14133U5H0.27131A72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWncWWtSHtHHcSHtWHtHScWW
15142QBG0.28670A1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
16162ZJR0.34050A1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcWWtSHncHSntSHncSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUCAGUAU*AGAACCG2
AUGAGUAA*UGAAAUU2
AUAAGUAA*UGAAAUU1
GUUAGUAC*GGAAGUC1
CUCAGUAC*GGAACUG1
CUCAGUAU*AGAACUG1
ACCGAGUAG*CGAAACU1
GUUAGUAC*GGAACAC1
CUUAGUAC*GGAACAG1
CUCAGUAC*GGAACCG1
CCCAGUAA*UGAACAG1
GGAACUG*CUCAGUAC1
GGAACUG*CUAAGUAC1
GUUAGUAG*CGAACCC1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACC3
UCAGUA*GAACU2
UUAGUA*GAACA2
UGAGUA*GAAAU2
CCGAGUA*GAAAC1
UAAGUA*GAAAU1
UUAGUA*GAAGU1
UUAGUA*GAACC1
CCAGUA*GAACA1
GAACU*UCAGUA1
GAACU*UAAGUA1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_85647.2Only in the child motif
IL_85647.3
Compare
IL_2QBG_048, IL_1Q96_003, IL_4A1C_008, IL_1Q96_001, IL_1S72_006, IL_3V2F_046, IL_3U5H_148, IL_1JBR_001, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_3V2F_006, IL_3U5H_122IL_2ZJR_045, IL_2ZJR_006, IL_2ZJR_007IL_4IOA_007, IL_4IOA_006, IL_4IOA_047

Coloring options:

Mutual discrepancy heat map legend: