#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-134-54-125-66-116-127-108-9
14A1C0.21240 35S RRNAG71U72U73A74G75U76A77C78*G98G99A100A101G102U103C104cWWntWHtHHcSHtWHtHScWW
22ZJR0.19720 X LSU rRNAG215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWntSHntSHtHHcSHtWHtHScWW
34A1B0.19470 126S RRNAG3007U3008U3009A3010G3011U3012A3013C3014*G3019G3020A3021A3022C3023A3024C3025cWWncSWntSHtHHncSHtWHtHScWW
43U5H0.14870 525S rRNAC3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWntSHtSHtHHcSHtWHtHScWW
51JBR0.089008x7 Sarcin-Ricin; G-bulgeC+FRNA (18-mer) + RNA (13-mer)C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
61Q960.000008x7 Sarcin-Ricin; G-bulgeAsarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
71Q960.10180 Csarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20||AA21||AC22||AC23G24cWWntSHtSHtHHcSHtWHtHScWW
84A1B0.15590 126S RRNAC80C81C82A83G84U85A86A87*U95G96A97A98C99A100G101cWWtSHtHHcSHtWHtHScWW
92QBG0.19200 B23S rRNAC201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
103V2F0.18540 A23S Ribosomal RNAC201U202C203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
111S720.20050 0 LSU rRNAC171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcWWntSHtHHcSHtWHtHScWW
122ZJR0.21540 X LSU rRNAC178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcWWtSHntHHcSHtWHntSHtHScWW
133U5H0.27131 75S rRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWncWWtSHtHHcSHtWHtHScWW
142QBG0.28670 B23S rRNAA1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
153V2F0.27020 A23S Ribosomal RNAA1262U1263G1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
162ZJR0.34050 X LSU rRNAA1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcWWtSHncHSntSHncSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUCAGUAU*AGAACCG2
AUGAGUAA*UGAAAUU2
CUCAGUAC*GGAACUG1
CUCAGUAU*AGAACUG1
ACCGAGUAG*CGAAACU1
AUAAGUAA*UGAAAUU1
GGAACUG*CUCAGUAC1
CCCAGUAA*UGAACAG1
GUUAGUAC*GGAACAC1
GUUAGUAG*CGAACCC1
CUUAGUAC*GGAACAG1
CUCAGUAC*GGAACCG1
GUUAGUAC*GGAAGUC1
CUAAGUAC*GGAACUG1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACC3
UCAGUA*GAACU2
UUAGUA*GAACA2
UGAGUA*GAAAU2
CCGAGUA*GAAAC1
UAAGUA*GAAAU1
UAAGUA*GAACU1
UUAGUA*GAACC1
CCAGUA*GAACA1
UUAGUA*GAAGU1
GAACU*UCAGUA1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_85647.2Only in the child motif
IL_85647.3
Compare
IL_2QBG_048, IL_1Q96_003, IL_4A1C_008, IL_1Q96_001, IL_1S72_006, IL_3V2F_046, IL_3U5H_148, IL_1JBR_001, IL_4A1B_003, IL_2QBG_011, IL_4A1B_118, IL_3V2F_006, IL_3U5H_122IL_2ZJR_045, IL_2ZJR_006, IL_2ZJR_007IL_4IOA_007, IL_4IOA_006, IL_4IOA_047
Annotations
  • 8x7 Sarcin-Ricin; G-bulge (2)
  • Basepair signature
    cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.08 | Avg 0.23 | Max 0.39
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