Description:
Sarcin-ricin parent motif with 15 Nts
Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Free text annotation:
Complete Sarcin-ricin IL motif
Intraclusteral linkage
Min 0.06 | Avg 0.25 | Max 0.42
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#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-132-143-113-123-134-114-124-135-65-75-116-76-116-127-108-9
1181Q960.00000C6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
2171JBR0.08900C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
3191Q960.10180C6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWntSHtSHtHHcSHtWHtHScWW
4143U5H0.14870C3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWntSHtSHtHHcSHtWHtHScWW
5204A1B0.15590C80C81C82A83G84U85A86A87*U95G96A97A98C99A100G101cWWbiftSHtHHcSHtWHtHScWW
6161VX60.17480G71C72U73A74G75U76A77C78*G98G99A100A101C102A103C104cWWcWWtSHtHHcSHtWHntSHtHScWW
7134CUV0.17540C3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWntSHtSHtHHcSHtWHtHScWW
8214IOA0.18210G215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWntSHntSHtHHcSHtWHtHScWW
994QCN0.18370C190U191C192A193G194U195A196C197*G177G178A179A180C181U182G183cWWcWWtSHtHHcSHtWHtHScWW
10102QBG0.19200C201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcWWtSHtHHcSHtWHtHScWW
11154A1B0.19470G3007U3008U3009A3010G3011U3012A3013C3014*G3019G3020A3021A3022C3023A3024C3025cWWncSWntSHtHHntHHncSHncSHtWHtHScWW
12224W210.19540G71U72U73A74G75U76A77C78*G98G99A100A101U102A103C104cWWntSHtHHcSHtWHntSHtHScWW
1371S720.20050C171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcWWntSHtHHcSHtWHtHScWW
1484IOA0.20080C178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcWWtSHtHHcSHtWHtHScWW
15124W210.20130C4596U4597C4598A4599G4600U4601A4602C4603*G4608G4609A4610A4611C4612C4613G4614cWWntSHtSHtHHcSHtWHtHScWW
16234A1C0.21240G71U72U73A74G75U76A77C78*G98G99A100A101G102U103C104cWWntWHtHHcSHtWHntSHtHScWW
17241VX60.24530U82U83U84A85G86U87A88A89*U97G98A99A100C101A102A103cWWntSHntSWtHHcSHtWHtHScWW
1841VW30.24840A1295U1296G1297A1298G1299U1300A1301A1302*U1911G1912A1913A1914A1915U1916U1917cWWcWWtSHtHHcSHtWHtHScWW
1953U5H0.27131A72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWWtSHtHHcSHtWHtHScWW
20111VW30.27390C241U242A243A244G245U246A247A248*U228G229A230A231C232U233G234cWWcWWtSHtHHcSHntSSntWWtHScWW
2124QCN0.27620A1308U1309G1310A1311G1312U1313A1314A1315*U2033G2034A2035A2036A2037U2038U2039cWWcWWtSHtHHcSHtWHtHScWW
2264CUV0.28031A72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWWtSHtHHcSHtWHtHScWW
2332QBG0.28670A1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcWWtSHtHHcSHtWHtHScWW
24254W210.28780C81U82C83A84G85U86A87A88*U96G97A98A99C100A101G102cWWntSWntSHntWHntSHntHHcSHncWHcWW
2514IOA0.34850A1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcWWtSHntSHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
AUGAGUAA*UGAAAUU3
CUCAGUAU*AGAACCG2
ACCGAGUAG*CGAAACU2
CUUAGUAC*GGAACAG2
CUCAGUAC*GGAACCG2
CUCAGUAC*GGAACUG2
UUUAGUAA*UGAACAA1
CUAAGUAA*UGAACUG1
CUCAGUAA*UGAACAG1
AUAAGUAA*UGAAAUU1
GUUAGUAC*GGAAGUC1
GUUAGUAC*GGAACAC1
GCUAGUAC*GGAACAC1
CCCAGUAA*UGAACAG1
GUUAGUAG*CGAACCC1
CUAAGUAC*GGAACUG1
GUUAGUAC*GGAAUAC1
CUCAGUAU*AGAACUG1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACC4
UUAGUA*GAACA4
UGAGUA*GAAAU3
UCAGUA*GAACU3
CCGAGUA*GAAAC2
UAAGUA*GAACU2
UAAGUA*GAAAU1
UCAGUA*GAACA1
CCAGUA*GAACA1
CUAGUA*GAACA1
UUAGUA*GAAUA1
UUAGUA*GAAGU1
UUAGUA*GAACC1

Release history

Release1.18
Date2014-10-07
StatusUpdated, 1 parent

Parent motifs

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: