IL_87904.7

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-3	2-8	2-9	3-8	4-6	4-7	4-8	5-6
1	IL_4CUX_077➜	4CUX	0.7581		2	18S RRNA	C	1495	U	1496	U	1497	G	1498	G	1499	*	U	1508	C	1509	U	1510	U	1511	G	1512	cWW		ncWW	cWW	ntHW	ncWW	ncWW	ncWS	cWW
2	IL_2QWY_001➜	2QWY	0.5454		A	SAM-II riboswitch	A	46	A	47	A	48	A	49	G	50	*	C	16	G	17	U	18	A	19	U	20	cWW			tSH	ntHW		tHS		cWW
3	IL_4CUV_035➜	4CUV	0.4250		1	25S RRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW	ncSH		tSH	tHS		tHS		cWW
4	IL_3U5H_032➜	3U5H	0.3966		5	25S rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW			tSH	tHS		tHS		cWW
5	IL_2QBG_024➜	2QBG	0.3691		B	23S rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW			tSH	tHS		tHS		cWW
6	IL_4NVV_023➜	4NVV	0.3744		A	23S Ribosomal RNA	U	750	G	751	A	752	A	753	G	754	*	U	771	G	772	G	773	A	774	G	775	cWW			tSH	tHS		tHS		cWW
7	IL_1S72_028➜	1S72	0.3688		0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	ncSH		tSH	tHS		tHS		cWW
8	IL_2QBG_068➜	2QBG	0.3102		B	23S rRNA	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740	cWW			tSH	tHS		ntHS		cWW
9	IL_3U5H_075➜	3U5H	0.2186		5	25S rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW			tSH	tHS		tHS		cWW
10	IL_4CUV_073➜	4CUV	0.2630		1	25S RRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW			tSH	tHS		tHS		cWW
11	IL_3IWN_002➜	3IWN	0.2817	Triple sheared	A	C-di-GMP riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW			ntSH			tHS		cWW
12	IL_3UCZ_001➜	3UCZ	0.3653		R	RNA (92-MER)	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45	cWW			ntSH			tHS		cWW
13	IL_4A1B_125➜	4A1B	0.3009		1	26S RRNA	U	3217	U	3218	A	3219	A	3220	C	3221	*	G	3189	A	3190	G	3191	C	3192	G	3193	cWW			ntSH	ntHS		tHS		cWW
14	IL_4FAW_002➜	4FAW	0.2420		A	Group II catalytic intron D1-D4-1	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW			ntSH	ntHS		tHS		cWW
15	IL_4BPP_090➜	4BPP	0.2491		A	18S RRNA	G	1672	A	1673	A	1674	A	1675	A	1676	*	U	1649	G	1650	G	1651	A	1652	C	1653	cWW			tSH	tHS		tHS		cWW
16	IL_4NVV_075➜	4NVV	0.0000		A	23S Ribosomal RNA	C	1904	G	1905	A	1906	A	1907	C	1908	*	G	1887	G	1888	G	1889	A	1890	G	1891	cWW			tSH	tHS		tHS		cWW
17	IL_4IOA_070➜	4IOA	0.1740	Triple sheared	X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852	cWW			ntSH	tHS		tHS		cWW
18	IL_2A64_006➜	2A64	0.2224	Triple sheared	A	ribonuclease P RNA	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW			ntSH	tHS		tHS		cWW
19	IL_2A64_005➜	2A64	0.2663	Triple sheared	A	ribonuclease P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW			tSH	tHS		tHS		cWW
20	IL_3DHS_004➜	3DHS	0.2811	Triple sheared	A	RNase P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	cSH		tSH	ntHS		tHS		cWW
21	IL_3U5F_091➜	3U5F	0.3738		6	18S rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	cWW			ntSW	tHS		tHS		cWW
22	IL_2AW7_058➜	2AW7	0.4398		A	16S ribosomal RNA	C	1259	G	1260	A	1261	C	1262	C	1263	*	G	1272	C	1273	A	1274	A	1275	G	1276	cWW			tSH	tHS				cWW
23	IL_1VW3_083➜	1VW3	0.2239		A	21S ribosomal RNA	C	2902	A	2903	A	2904	A	2905	U	2906	*	A	3112	U	3113	A	3114	A	3115	G	3116	cWW			tSH	tHS		tHS		cWW
24	IL_1S72_083➜	1S72	0.3347		0	LSU rRNA	C	2515	G	2516	A	2517	C	2518	C	2519	*	G	2501	C	2502	A	2503	A	2504	G	2505	cWW			tSH	tHS				cWW
25	IL_1U6B_002➜	1U6B	0.3825	Triple sheared	B	197-MER	G	56	A	57	A	58	A	59	C	60	*	G	84	C	85	A	86	A	87	C	88	cWW			tSH	tHS				cWW
26	IL_4NVV_091➜	4NVV	0.4126		A	23S Ribosomal RNA	C	2492	G	2493	G	2494	C	2495	G	2496	*	C	2478	C	2479	G	2480	A	2481	G	2482	cWW			tSH	ntHS				cWW
27	IL_4IOA_089➜	4IOA	0.4062	Triple sheared	X	LSU rRNA	C	2459	G	2460	G	2461	C	2462	G	2463	*	C	2445	C	2446	G	2447	A	2448	G	2449	cWW			tSH	ntHS				cWW
28	IL_4A1B_110➜	4A1B	0.3850		1	26S RRNA	C	2837	G	2838	A	2839	C	2840	G	2841	*	C	2823	C	2824	A	2825	A	2826	G	2827	cWW			tSH	tHS				cWW
29	IL_2QBG_094➜	2QBG	0.3945		B	23S rRNA	C	2480	G	2481	A	2482	C	2483	G	2484	*	C	2466	C	2467	A	2468	A	2469	G	2470	cWW			tSH	tHS				cWW
30	IL_3U5H_112➜	3U5H	0.4686		5	25S rRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839	cWW			tSH	tHS				cWW
31	IL_4CUV_116➜	4CUV	0.5123		1	25S RRNA	C	2849	G	2850	A	2851	C	2852	A	2853	*	U	2835	C	2836	A	2837	A	2838	G	2839	cWW			tSH	tHS				cWW
32	IL_1S72_021➜	1S72	0.5278		0	LSU rRNA	C	663	U	664	A	665	A	666	C	667	*	G	679	G	680	G	681	A	682	G	683	cWW			ntWH			tHS		cWW
33	IL_2QBG_019➜	2QBG	0.5239		B	23S rRNA	U	606	U	607	A	608	A	609	C	610	*	G	618	G	619	G	620	A	621	G	622	cWW			ntWH			tHS		cWW
34	IL_4NVV_017➜	4NVV	0.5381		A	23S Ribosomal RNA	U	629	U	630	A	631	A	632	G	633	*	C	643	G	644	G	645	A	646	G	647	cWW			ntWH			tHS		cWW
35	IL_4IOA_012➜	4IOA	0.6522	AAA cross-strand stack	X	LSU rRNA	U	616	U	617	A	618	A	619	G	620	*	C	629	G	630	G	631	A	632	G	633	cWW						tHS		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAG*UGGAG	4
CGAAG*CGGAG	3
CAAAC*GGACG	2
CGACG*CCAAG	2
UGAAU*AGGAA	2
CGACC*GCAAG	2
UUAAG*CGGAG	2
CGGCG*CCGAG	1
GAAAC*GCAAC	1
CCGAG*CGGCG	1
UCAAG*CGACA	1
UUAAC*GGGAG	1
CUAAC*GGGAG	1
CAAAU*AUAAG	1
CGACA*UCAAG	1
AGGAU*AGAAU	1
UUAAC*GAGCG	1
UGAGG*UGGAG	1
UGAAG*UGGAA	1
CUAAC*GGACG	1
GAAAA*UGGAC	1
CUUGG*UCUUG	1
CGAAA*UGGAG	1
GGGAG*CGAAC	1
AAAAG*CGUAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	11
GAC*CAA	5
UAA*GGA	4
GGA*GAA	2
AAA*GAC	2
CAA*GAC	1
AAA*UAA	1
AAA*CAA	1
CGA*GGC	1
GGC*CGA	1
AAA*GGA	1
AAA*GUA	1
GAG*GGA	1
UAA*AGC	1
UAA*GAC	1
UUG*CUU	1

Release history

Release	1.15
Date	2014-06-20
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_87904.7	Only in the parent motif
IL_87904.6 Compare	IL_2AW7_058, IL_4NVV_091, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_4NVV_023, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_1U6B_002, IL_2QBG_094, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4IOA_012, IL_4NVV_075, IL_4NVV_017, IL_3DHS_004	IL_4CUV_035, IL_4CUV_073, IL_4CUV_116, IL_4CUX_077	IL_4BPP_028

Children motifs

Child motif	Common motif instances	Only in IL_87904.7	Only in the child motif
IL_81965.1 Compare	IL_2AW7_058, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4CUX_077	IL_2QBG_019, IL_4CUV_035, IL_4NVV_075, IL_4NVV_091, IL_4IOA_012, IL_4NVV_017, IL_4NVV_023, IL_3DHS_004	IL_4BPP_028, IL_1VWW_092, IL_1VX6_113, IL_3J7A_080, IL_1VWW_098, IL_1VWW_077, IL_1VX2_078, IL_4QCN_071, IL_4QCN_092, IL_4QCN_015, IL_4QCN_021, IL_1VX6_038, IL_3J7A_061, IL_4CUX_047, IL_1VX6_072, IL_1VX2_035, IL_4CUX_006
IL_24982.8 Compare	IL_2QBG_019, IL_4IOA_012, IL_3DHS_004	IL_2AW7_058, IL_4NVV_091, IL_4CUV_035, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_1S72_021, IL_4NVV_017, IL_4NVV_023, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4NVV_075, IL_4CUX_077	IL_1S72_055, IL_3U5F_053, IL_2QBG_058, IL_4IOA_051, IL_3J7A_029, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_2QBG_052, IL_4QCN_049, IL_3J7A_047, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_1FJG_023, IL_4IOA_026
IL_73348.1 Compare	IL_4CUV_035	IL_2AW7_058, IL_4NVV_091, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_2QWY_001, IL_2QBG_068, IL_1S72_028, IL_2QBG_019, IL_1S72_021, IL_4NVV_017, IL_4NVV_023, IL_1VW3_083, IL_3IWN_002, IL_2A64_005, IL_2A64_006, IL_4BPP_090, IL_2QBG_024, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_4IOA_012, IL_4NVV_075, IL_4CUX_077, IL_3DHS_004	IL_1VWW_063

Motif IL_87904.7 Version IL_87904.7 of this group appears in releases 1.15 to 1.15 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_87904.7 Version IL_87904.7 of this group appears in releases 1.15 to 1.15

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